Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 271 of 410
Found at i:83761458 original size:12 final size:12
Alignment explanation
Indices: 83761441--83761470 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
83761431 GGACAAACGG
83761441 CCATGTCCTAGC
1 CCATGTCCTAGC
*
83761453 CCATGTCCTTGC
1 CCATGTCCTAGC
83761465 CCATGT
1 CCATGT
83761471 AACTCACTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.40, G:0.17, T:0.30
Consensus pattern (12 bp):
CCATGTCCTAGC
Found at i:83761869 original size:23 final size:24
Alignment explanation
Indices: 83761843--83761887 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
83761833 CAAATTTGAA
83761843 GCTAAG-TA-CATACCAAGCATTAG
1 GCTAAGCTATCATACCAA-CATTAG
83761866 GCTAAGCTATCATACCAACATT
1 GCTAAGCTATCATACCAACATT
83761888 GCCTCAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (24 bp):
GCTAAGCTATCATACCAACATTAG
Found at i:83763584 original size:5 final size:5
Alignment explanation
Indices: 83763574--83763609 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
83763564 CGTTCTCGTC
83763574 TTCTT TTC-T TTC-T TTCTT TTCTT TTC-T TTCTT TTCT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCT
83763610 AATTTGCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.41
5 17 0.59
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTCTT
Found at i:83763588 original size:9 final size:9
Alignment explanation
Indices: 83763574--83763609 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
83763564 CGTTCTCGTC
83763574 TTCTTTTCT
1 TTCTTTTCT
83763583 TTC-TTTCTT
1 TTCTTTTC-T
83763592 TTCTTTTCT
1 TTCTTTTCT
83763601 TTCTTTTCT
1 TTCTTTTCT
83763610 AATTTGCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 4 0.16
9 17 0.68
10 4 0.16
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TTCTTTTCT
Found at i:83766205 original size:16 final size:16
Alignment explanation
Indices: 83766186--83766228 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
83766176 AATATGGTGT
83766186 AAAGAAAAGGAAAAGA
1 AAAGAAAAGGAAAAGA
** *
83766202 AAAGAAAAACAGAAGA
1 AAAGAAAAGGAAAAGA
83766218 AATAGAAAAGG
1 AA-AGAAAAGG
83766229 GAAGAAAAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.72, C:0.02, G:0.23, T:0.02
Consensus pattern (16 bp):
AAAGAAAAGGAAAAGA
Found at i:83768127 original size:29 final size:29
Alignment explanation
Indices: 83768094--83768150 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
83768084 TTTAATAATT
83768094 CTATCCACCTCCGTTGCCTTGAGCTCAAA
1 CTATCCACCTCCGTTGCCTTGAGCTCAAA
83768123 CTATCCACCTCCGTTGCCTTGAGCTCAA
1 CTATCCACCTCCGTTGCCTTGAGCTCAA
83768151 CTCTTTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.19, C:0.39, G:0.14, T:0.28
Consensus pattern (29 bp):
CTATCCACCTCCGTTGCCTTGAGCTCAAA
Found at i:83771034 original size:13 final size:13
Alignment explanation
Indices: 83771016--83771042 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83771006 TAAGTAATCG
83771016 CACACGGGCGTGT
1 CACACGGGCGTGT
83771029 CACACGGGCGTGT
1 CACACGGGCGTGT
83771042 C
1 C
83771043 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:83775462 original size:25 final size:25
Alignment explanation
Indices: 83775428--83775477 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
83775418 ATGGTTCAAG
83775428 AAAGTATTGTGTTAGAACATAAAAT
1 AAAGTATTGTGTTAGAACATAAAAT
*
83775453 AAAGTATTGTGTTAGGACATAAAAT
1 AAAGTATTGTGTTAGAACATAAAAT
83775478 TTCTAGTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32
Consensus pattern (25 bp):
AAAGTATTGTGTTAGAACATAAAAT
Found at i:83785280 original size:40 final size:40
Alignment explanation
Indices: 83785221--83785358 Score: 156
Period size: 40 Copynumber: 3.5 Consensus size: 40
83785211 AACACACCAG
* *
83785221 ACAGAAGCTCAGAAGAGCTGATCCAACCTAAATATGCCAA
1 ACAGAAGCTCATAAGAGCTGGTCCAACCTAAATATGCCAA
* **
83785261 ACAAAAGCTCATAAGAGCTGGTCCAA-CTGAAATACACCAA
1 ACAGAAGCTCATAAGAGCTGGTCCAACCT-AAATATGCCAA
* * *
83785301 ACAGAAGCTCATAAGA-CTTGGTCCACCCAAAACATGCC-A
1 ACAGAAGCTCATAAGAGC-TGGTCCAACCTAAATATGCCAA
*
83785340 ACAGAAGCTCTTAAGAGCT
1 ACAGAAGCTCATAAGAGCT
83785359 AAACAGAAAC
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
39 20 0.24
40 61 0.74
41 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.16
Consensus pattern (40 bp):
ACAGAAGCTCATAAGAGCTGGTCCAACCTAAATATGCCAA
Found at i:83785365 original size:21 final size:21
Alignment explanation
Indices: 83785339--83785379 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83785329 AAAACATGCC
* *
83785339 AACAGAAGCTCTTAAGAGCTA
1 AACAGAAACTCATAAGAGCTA
83785360 AACAGAAACTCATAAGAGCT
1 AACAGAAACTCATAAGAGCT
83785380 GCTCCACCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.17
Consensus pattern (21 bp):
AACAGAAACTCATAAGAGCTA
Found at i:83790435 original size:42 final size:42
Alignment explanation
Indices: 83790332--83790488 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 42
83790322 TATGTTATCG
* * *
83790332 TGTAAGACCACGTCTGGTACGTTGGCATCG-ACTTATTATTTGCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATTT-CA
83790376 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
* *
83790418 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATTTCA
*
83790461 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
83790489 TGTACTAGAT
Statistics
Matches: 101, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 40 0.40
44 32 0.32
45 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
Found at i:83807905 original size:13 final size:13
Alignment explanation
Indices: 83807875--83807904 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
83807865 ATTTTGATAG
83807875 TTTTTCTTCTTTT
1 TTTTTCTTCTTTT
83807888 TTTTTCTT-TTTT
1 TTTTTCTTCTTTT
83807900 TTTTT
1 TTTTT
83807905 TTACAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTCTTCTTTT
Found at i:83815455 original size:27 final size:27
Alignment explanation
Indices: 83815425--83815516 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
83815415 ATTACCAAAG
* * *
83815425 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTAAAAAATTACCGTTT
* *
83815452 TACCCTCAATTTAAAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCGTTT
*
83815479 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTAAAAAATTACCGTTT
83815506 TACCCTCGATT
1 TACCCTCGATT
83815517 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCGTTT
Found at i:83815598 original size:27 final size:26
Alignment explanation
Indices: 83815548--83815645 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
83815538 TGTAAGATAG
** *
83815548 AATTACCAAAATACCACTGGTTTGAGA
1 AATTACCAAAATACC-CTAATTTGAAA
**
83815575 AATTACCAAAATACCCTCAATTTGTTA
1 AATTACCAAAATACCCT-AATTTGAAA
83815602 AATTACCAAAATATCCCTAATTT-ACAA
1 AATTACCAAAATA-CCCTAATTTGA-AA
83815629 AATTA-CAGAAATACCCT
1 AATTACCA-AAATACCCT
83815646 TGACTTTTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
26 8 0.13
27 49 0.80
28 4 0.07
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGAAA
Found at i:83815691 original size:27 final size:26
Alignment explanation
Indices: 83815654--83815709 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
83815644 CTTGACTTTT
*
83815654 TTTAAAAATTA-TAGGAATACCATTGG
1 TTTAAAAATTACT-GAAATACCATTGG
*
83815680 TTTACAAAATTACTGAAATACCCTTGG
1 TTTA-AAAATTACTGAAATACCATTGG
83815707 TTT
1 TTT
83815710 GTAGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
TTTAAAAATTACTGAAATACCATTGG
Found at i:83815792 original size:26 final size:27
Alignment explanation
Indices: 83815763--83815822 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
83815753 ACCCCTAATA
83815763 GGTAAAAAGACCGTAA-AGCCC-TGTAG
1 GGTAAAAAGACCGTAATA-CCCTTGTAG
** *
83815789 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCTTGTAG
83815816 GGTAAAA
1 GGTAAAA
83815823 TGATGAATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCTTGTAG
Found at i:83816683 original size:25 final size:25
Alignment explanation
Indices: 83816629--83816686 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
83816619 AGGAAATGCT
* * *
83816629 AAAAGGGCTCTGCCCTAGTTTACCG
1 AAAAGGGCCCTGCCCCAGTTTACAG
83816654 AAAAGGGCCCTGCCCCAGTTTATCAG
1 AAAAGGGCCCTGCCCCAGTTTA-CAG
83816680 -AAAGGGC
1 AAAAGGGC
83816687 TTTACCCCAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (25 bp):
AAAAGGGCCCTGCCCCAGTTTACAG
Found at i:83816905 original size:42 final size:42
Alignment explanation
Indices: 83816846--83816937 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
83816836 TAGTCTCCCC
** *
83816846 AAATGGGCTTGCATACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATGTGATATTG
83816888 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
83816930 AAATGGGC
1 AAATGGGC
83816938 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
Found at i:83816996 original size:31 final size:31
Alignment explanation
Indices: 83816961--83817039 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
83816951 CGTTTACAGT
*
83816961 AAAGGCTTAGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
83816992 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
83817023 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
83817040 AACTGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:83821024 original size:40 final size:40
Alignment explanation
Indices: 83820923--83821141 Score: 240
Period size: 40 Copynumber: 5.5 Consensus size: 40
83820913 CGAATGGTAT
* * * * * *
83820923 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
83820964 CCGGGTCAATTCCCGAAGGCACTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
83821004 CTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
83821044 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * *
83821084 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
83821124 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
83821142 ACAATCGAGC
Statistics
Matches: 153, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 130 0.85
41 23 0.15
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:83821137 original size:120 final size:121
Alignment explanation
Indices: 83820923--83821141 Score: 307
Period size: 120 Copynumber: 1.8 Consensus size: 121
83820913 CGAATGGTAT
* *
83820923 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCACTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * * *
83820988 GTGCGAGTTACCAAAACTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
83821044 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
83821107 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
83821142 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.68
121 26 0.31
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:83821162 original size:40 final size:40
Alignment explanation
Indices: 83821084--83821167 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
83821074 GTTACTAAAT
* * *
83821084 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
83821124 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
83821164 CCGG
1 CCGG
83821168 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:83821176 original size:80 final size:80
Alignment explanation
Indices: 83821014--83821167 Score: 182
Period size: 80 Copynumber: 1.9 Consensus size: 80
83821004 CTGGGTTAAG
* * * * * * * * *
83821014 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
83821079 TAAATCCGGGCTAAT
66 TAAATCCGGGCTAAT
* * * *
83821094 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGC
1 TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
*
83821159 TATATCCGG
66 TAAATCCGG
83821168 TTAAATTCCG
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 60 1.00
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.23
Consensus pattern (80 bp):
TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
TAAATCCGGGCTAAT
Found at i:83824200 original size:19 final size:19
Alignment explanation
Indices: 83824163--83824208 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
83824153 ATGGGCCCAC
*
83824163 AGCCCA-TTGGGCCCATTT
1 AGCCCATTTCGGCCCATTT
*
83824181 AGCCCATTTCGGCCCGTTT
1 AGCCCATTTCGGCCCATTT
*
83824200 AGCCAATTT
1 AGCCCATTT
83824209 ACAACCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.17, C:0.33, G:0.20, T:0.30
Consensus pattern (19 bp):
AGCCCATTTCGGCCCATTT
Found at i:83826447 original size:30 final size:30
Alignment explanation
Indices: 83826390--83826447 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
83826380 AATCCCGAGC
*
83826390 TTAGGGGCAAAAATGTAAATATGCAAAAGT
1 TTAGGGGCAAAAATGTAAATATCCAAAAGT
* * *
83826420 TTAGGGGCAAAATTGTAATTTTCCAAAA
1 TTAGGGGCAAAAATGTAAATATCCAAAA
83826448 TTTGAGTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (30 bp):
TTAGGGGCAAAAATGTAAATATCCAAAAGT
Found at i:83833939 original size:30 final size:30
Alignment explanation
Indices: 83833883--83833939 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
83833873 AATCCCGAGC
*
83833883 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATCCAAAAGTT
* * *
83833913 TAGGGGCAAAATTGTAATTTTCCAAAA
1 TAGGGGCAAAAATGTAAATATCCAAAA
83833940 TTTGAGTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATCCAAAAGTT
Found at i:83838789 original size:28 final size:27
Alignment explanation
Indices: 83838749--83838855 Score: 99
Period size: 28 Copynumber: 3.9 Consensus size: 27
83838739 CTATATATAT
*
83838749 ATATGGCCCATTAGGCCCAATCTCTTTC
1 ATATGG-CCATTAGGCCCAATCACTTTC
* **
83838777 ATATGGCCCATTAGGTCCTTTCACATTT-
1 ATATGG-CCATTAGGCCCAATCAC-TTTC
* * **
83838805 ATGTGGCCATTAGGCCTTAATCAAATTC
1 ATATGGCCATTAGGCC-CAATCACTTTC
83838833 ATATGGCCATTAGGCCCAATCAC
1 ATATGGCCATTAGGCCCAATCAC
83838856 ATTTACAGTC
Statistics
Matches: 62, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
27 16 0.26
28 43 0.69
29 3 0.05
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (27 bp):
ATATGGCCATTAGGCCCAATCACTTTC
Found at i:83838817 original size:55 final size:55
Alignment explanation
Indices: 83838756--83838860 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
83838746 TATATATGGC
*** * **
83838756 CCATTAGGCC-CAATCTCTTTCATATGGCCCATTAGGTCCTTTCACATTTATGTGG
1 CCATTAGGCCTCAATCAAATTCATATGG-CCATTAGGCCCAATCACATTTATGTGG
*
83838811 CCATTAGGCCTTAATCAAATTCATATGGCCATTAGGCCCAATCACATTTA
1 CCATTAGGCCTCAATCAAATTCATATGGCCATTAGGCCCAATCACATTTA
83838861 CAGTCATGCT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 29 0.69
56 13 0.31
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (55 bp):
CCATTAGGCCTCAATCAAATTCATATGGCCATTAGGCCCAATCACATTTATGTGG
Found at i:83841094 original size:11 final size:11
Alignment explanation
Indices: 83841069--83841110 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
83841059 CAACAAAACA
*
83841069 TAAAGAAA-CC
1 TAAAGAAATTC
*
83841079 TAAAGAACTTC
1 TAAAGAAATTC
83841090 TAAAGAAATTC
1 TAAAGAAATTC
83841101 TAAAGAAATT
1 TAAAGAAATT
83841111 GAGTGGAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.24
Consensus pattern (11 bp):
TAAAGAAATTC
Found at i:83843523 original size:21 final size:22
Alignment explanation
Indices: 83843491--83843533 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
83843481 AAAGTCTTTT
*
83843491 TAGAACATAAAA-AAATGGAAA
1 TAGAACATAAAATAAAAGGAAA
83843512 TAGAA-ATAAAAATAAAAGGAAA
1 TAGAACAT-AAAATAAAAGGAAA
83843534 AATAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.11
21 9 0.47
22 8 0.42
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (22 bp):
TAGAACATAAAATAAAAGGAAA
Found at i:83855595 original size:130 final size:130
Alignment explanation
Indices: 83855362--83855622 Score: 522
Period size: 130 Copynumber: 2.0 Consensus size: 130
83855352 TATTTTGAGA
83855362 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
1 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
83855427 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
66 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
83855492 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
1 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
83855557 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
66 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
83855622 T
1 T
83855623 ATAATTGAAC
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (130 bp):
TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
Found at i:83856579 original size:39 final size:39
Alignment explanation
Indices: 83856534--83856693 Score: 284
Period size: 39 Copynumber: 4.1 Consensus size: 39
83856524 ATTCAAGACA
83856534 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
83856573 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
83856612 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
83856651 TTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
83856690 CTGG
1 CTGG
83856694 TAATATAATT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:83859418 original size:43 final size:43
Alignment explanation
Indices: 83859258--83859429 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
83859248 TATAGGATTC
* * *
83859258 CGATATGTGATTTCGTGTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * * *
83859301 CGAT-TTGTGATTTACGTGTAAGACTATGTCTGGGACATCGACAT
1 CGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
** **
83859345 CG-TATTTGATTTTGTGTAAGACCTTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGAC-GTTGGCAT
* *
83859387 CGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
83859430 TATATGAGCT
Statistics
Matches: 102, Mismatches: 21, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
42 29 0.28
43 43 0.42
44 30 0.29
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:83861601 original size:28 final size:28
Alignment explanation
Indices: 83861556--83861652 Score: 178
Period size: 28 Copynumber: 3.5 Consensus size: 28
83861546 CTTAAAACCC
*
83861556 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83861583 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83861611 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
83861639 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
83861653 TGATCTACGC
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 7 0.10
28 61 0.90
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:83875953 original size:29 final size:29
Alignment explanation
Indices: 83875920--83875993 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
83875910 GTGACGAGAT
*
83875920 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83875949 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83875978 TGGCACTAAGTGTGCA
1 TGGCACTAAGTGTGCA
83875994 AGCTCGAAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:83876009 original size:29 final size:29
Alignment explanation
Indices: 83875920--83876013 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
83875910 GTGACGAGAT
** * * *
83875920 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCAAGCTCGAAAGACA
* * * *
83875949 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCAAGCTCGAAAGACA
* *
83875978 TGGCACTAAGTGTGCAAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCAAGCTCGAAAGACA
83876007 TGGCACT
1 TGGCACT
83876014 GTGTGTGCGG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTCGAAAGACA
Found at i:83883823 original size:29 final size:29
Alignment explanation
Indices: 83883790--83883863 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
83883780 GTGACGAGAT
83883790 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83883819 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
83883848 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83883864 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83883879 original size:29 final size:28
Alignment explanation
Indices: 83883847--83883921 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
83883837 CTGGAAATAT
* *
83883847 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
83883876 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
83883904 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
83883922 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:83883890 original size:58 final size:57
Alignment explanation
Indices: 83883790--83883921 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
83883780 GTGACGAGAT
* * * * * *
83883790 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
83883848 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
83883905 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
83883922 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:83889759 original size:80 final size:80
Alignment explanation
Indices: 83889675--83889823 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
83889665 TATGGTAACC
* * * *
83889675 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
83889739 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
83889755 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
83889820 CCGG
66 CCGG
83889824 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:83889765 original size:40 final size:38
Alignment explanation
Indices: 83889716--83889823 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
83889706 ATCACGATTT
*
83889716 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
83889756 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
83889796 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
83889824 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:83897876 original size:80 final size:80
Alignment explanation
Indices: 83897792--83897940 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
83897782 TATGGTAACC
* * * *
83897792 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
83897856 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
83897872 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
83897937 CCGG
66 CCGG
83897941 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:83897882 original size:40 final size:38
Alignment explanation
Indices: 83897833--83897940 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
83897823 ATCACGATTT
*
83897833 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
83897873 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
83897913 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
83897941 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:83900453 original size:31 final size:31
Alignment explanation
Indices: 83900415--83900493 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
83900405 TTTAACAGTT
83900415 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
83900446 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
83900477 ATTGGGCTGAAG-CTTTT
1 ACTGGGCCGAAGCCTTTT
83900494 ACTGTAAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:83900564 original size:42 final size:42
Alignment explanation
Indices: 83900517--83900608 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
83900507 TGGCCCTTAG
* *** *
83900517 GCCCATTTCAATATCACATGTAATGTTAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83900559 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
83900601 GCCCATTT
1 GCCCATTT
83900609 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:83900856 original size:26 final size:26
Alignment explanation
Indices: 83900753--83900926 Score: 228
Period size: 26 Copynumber: 6.8 Consensus size: 26
83900743 CCTATTTAAT
* **
83900753 AACTGGGGCA-AAGCTCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
83900778 AACTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
83900803 AACTGGGGCTTAAGCCC-TTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
83900828 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
** **
83900854 AACTAAGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
83900880 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
83900906 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
83900927 GCACTTCCTC
Statistics
Matches: 128, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
25 51 0.40
26 77 0.60
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:83900898 original size:52 final size:52
Alignment explanation
Indices: 83900753--83900926 Score: 282
Period size: 52 Copynumber: 3.4 Consensus size: 52
83900743 CCTATTTAAT
* *
83900753 AACTGGGGCA-AAGCTCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
83900803 AACTGGGGCTTAAGCCC-TTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
**
83900854 AACTAAGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
83900906 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
83900927 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
50 26 0.23
51 34 0.30
52 53 0.47
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:83901399 original size:20 final size:21
Alignment explanation
Indices: 83901374--83901413 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
83901364 TGGGTCAGAA
83901374 AGCCCATTG-GGCCTAATTTC
1 AGCCCATTGAGGCCTAATTTC
83901394 AGCCCATTGAGGCCTAATTT
1 AGCCCATTGAGGCCTAATTT
83901414 ACCATCGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (21 bp):
AGCCCATTGAGGCCTAATTTC
Found at i:83901757 original size:27 final size:27
Alignment explanation
Indices: 83901727--83901791 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
83901717 GGGCATATTC
83901727 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
83901754 GTCACTTTACCTTACATGGGCTTTATG
1 GTCATTTTACCATACAAGGGCTTTACG
*
83901781 GTCTTTTTACC
1 GTCATTTTACC
83901792 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:83901875 original size:27 final size:27
Alignment explanation
Indices: 83901843--83902039 Score: 153
Period size: 27 Copynumber: 7.2 Consensus size: 27
83901833 TGGTAAATCA
*
83901843 ACAAACCAAGGGTATTTCAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
* * **
83901870 ATAAACCAATGGTATTTCTATAATTTTT
1 ACAAACCAAGGGTATTTCGGTAA-TTTT
* * *
83901898 AGAAAGTCAAGGGTATTTCTGTAATTTT
1 ACAAA-CCAAGGGTATTTCGGTAATTTT
** ** * *
83901926 GTAAATTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
*** *
83901953 ACAAATTGAGGGTATTTCGGTAATTTC
1 ACAAACCAAGGGTATTTCGGTAATTTT
* *
83901980 ATAAACC-AGTGGTATTTTGGTAATTTT
1 ACAAACCAAG-GGTATTTCGGTAATTTT
* * *
83902007 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
83902034 ACAAAC
1 ACAAAC
83902040 TAGGGTTATT
Statistics
Matches: 138, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.01
27 105 0.76
28 16 0.12
29 15 0.11
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
ACAAACCAAGGGTATTTCGGTAATTTT
Found at i:83901915 original size:29 final size:28
Alignment explanation
Indices: 83901845--83901925 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
83901835 GTAAATCAAC
*
83901845 AAACCAAGGGTATTTC-AGTAA-TTTTAT
1 AAACCAAGGGTATTTCTA-TAATTTTTAG
*
83901872 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACCAAGGGTATTTCTATAATTTTTAG
* *
83901900 AAAGTCAAGGGTATTTCTGTAATTTT
1 AAA-CCAAGGGTATTTCTATAATTTT
83901926 GTAAATTAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 18 0.39
28 9 0.20
29 19 0.41
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.41
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTATAATTTTTAG
Found at i:83901994 original size:54 final size:53
Alignment explanation
Indices: 83901851--83902056 Score: 191
Period size: 54 Copynumber: 3.8 Consensus size: 53
83901841 CAACAAACCA
* * * * *
83901851 AGGGTATTTCAGTAATTTTATAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 AGGGTATTTCGGTAATTTTATAAACCAGTGGTATTT-TGGTAA-TTTTACAAA-T-T
* * ** *
83901907 AGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTACAAATT
* *
83901960 GAGGGTATTTCGGTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTACAAATT
* * * *
83902014 AGGGGTATTTTGGTAATTTTACAAACTAG-GGTTATTATGGTAA
1 A-GGGTATTTCGGTAATTTTATAAACCAGTGG-TATTTTGGTAA
83902057 ATCTATCCTA
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
53 3 0.02
54 80 0.64
55 9 0.07
56 33 0.26
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTATAAACCAGTGGTATTTTGGTAATTTTACAAATT
Found at i:83902040 original size:27 final size:27
Alignment explanation
Indices: 83901908--83902056 Score: 167
Period size: 27 Copynumber: 5.5 Consensus size: 27
83901898 AGAAAGTCAA
** *
83901908 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
83901935 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
83901961 AGGGTATTTCGGTAATTTCATAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
83901989 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
83902016 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
83902043 GGTTATTATGGTAA
1 GGGTATTTTGGTAA
83902057 ATCTATCCTA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.03
27 99 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:83902084 original size:81 final size:80
Alignment explanation
Indices: 83901908--83902091 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 80
83901898 AGAAAGTCAA
* ** * *
83901908 GGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGG
83901973 TAATTTCATAAACCAG
66 TAATTTCAT-AACCAG
* **
83901989 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT-AGGGTTATTAT-
1 GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTGAGGG-TATT-TC
*
83902052 GGTAAATCTATCCT-A-CAG
64 GGT-AAT-T-TCATAACCAG
*
83902070 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
83902092 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
80 4 0.05
81 73 0.85
82 5 0.06
83 1 0.01
84 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGG
TAATTTCATAACCAG
Found at i:83902129 original size:27 final size:27
Alignment explanation
Indices: 83902090--83902287 Score: 243
Period size: 27 Copynumber: 7.3 Consensus size: 27
83902080 GTAATTTCAC
*
83902090 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
83902117 AATTGAAGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
83902144 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
83902171 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
83902198 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * * *
83902225 AATTGGGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * **
83902252 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
83902279 AATCGAGGG
1 AATCGAGGG
83902288 CATTTCAGTA
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:83902148 original size:54 final size:54
Alignment explanation
Indices: 83902090--83902273 Score: 278
Period size: 54 Copynumber: 3.4 Consensus size: 54
83902080 GTAATTTCAC
* * * *
83902090 AATCGAGGGTAAAACGATAATTTTGTAAATTGAAGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
* *
83902144 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
* * *
83902198 AATCGAGGGTAAAACGGTAATTTTGTAAATTGGGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
*
83902252 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
83902274 CTACAAATCG
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
Found at i:83902285 original size:81 final size:81
Alignment explanation
Indices: 83902090--83902287 Score: 270
Period size: 81 Copynumber: 2.4 Consensus size: 81
83902080 GTAATTTCAC
* * * * * * *
83902090 AATCGAGGGTAAAACGATAATTTTGTAAATTGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
* * *
83902155 AAATGGTAATTTTGTA
66 AAACGGTAATTCTATA
* * *
83902171 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATTGGGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
83902236 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
83902252 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
83902288 CATTTCAGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:83902299 original size:81 final size:81
Alignment explanation
Indices: 83902133--83902307 Score: 233
Period size: 81 Copynumber: 2.2 Consensus size: 81
83902123 AGGTAAAATG
* * * *
83902133 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
* *
83902198 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* * *
83902214 GTAATTTTGTAAATTGGGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
***
83902279 AATCGAGGGCATTTCA
66 AATCGAGGGCAAAACA
*
83902295 GTAATTTGGTAAA
1 GTAATTTTGTAAA
83902308 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:83908505 original size:24 final size:24
Alignment explanation
Indices: 83908262--83908503 Score: 414
Period size: 24 Copynumber: 10.1 Consensus size: 24
83908252 GCAAAGACCA
83908262 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
83908286 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
83908310 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
83908334 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
83908358 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
83908382 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
83908406 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
83908430 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
83908454 TATGGCACTATG-GTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
83908477 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
83908501 TAT
1 TAT
83908504 AGTCACATTC
Statistics
Matches: 211, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 21 0.10
24 190 0.90
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:83916202 original size:28 final size:28
Alignment explanation
Indices: 83916137--83916237 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
83916127 ATAGTGAATC
*
83916137 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
83916166 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
83916194 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
83916224 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83916238 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:83924159 original size:28 final size:28
Alignment explanation
Indices: 83924094--83924194 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
83924084 ATAGTGAATC
*
83924094 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
83924123 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
83924151 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
83924181 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83924195 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:83928234 original size:21 final size:21
Alignment explanation
Indices: 83928209--83928249 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
83928199 TACTAGGTAG
83928209 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
83928230 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
83928250 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:83928929 original size:2 final size:2
Alignment explanation
Indices: 83928922--83928952 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
83928912 ATATAAAACA
*
83928922 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83928953 AGTAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83929067 original size:17 final size:18
Alignment explanation
Indices: 83929028--83929070 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
83929018 TAAGGAAAAT
*
83929028 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
83929047 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
83929064 AATAATA
1 AATAATA
83929071 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:83929067 original size:20 final size:19
Alignment explanation
Indices: 83929006--83929070 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
83928996 AAAAAGATGT
**
83929006 AAAATAATAAT-T-TAAGG
1 AAAATAATAATATATAATA
83929023 AAAATAAT-ATATATAATA
1 AAAATAATAATATATAATA
*
83929041 AGTAATAATAATATATAATTA
1 A-AAATAATAATATATAA-TA
83929062 AAAATAATA
1 AAAATAATA
83929071 CTCATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 2 0.05
17 9 0.23
18 4 0.10
19 6 0.15
20 15 0.38
21 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AAAATAATAATATATAATA
Found at i:83932710 original size:37 final size:37
Alignment explanation
Indices: 83932660--83932795 Score: 218
Period size: 37 Copynumber: 3.7 Consensus size: 37
83932650 TAGTCCCCAG
* * * * *
83932660 ACGTAGTTATCGGGTCCTACCCAGACAAAATCTCCAT
1 ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
*
83932697 ACGTAGTCATCGGGTCTTACTCGGACATAATCTCCAC
1 ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
83932734 ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
1 ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
83932771 ACGTAGTCATCGGGTCTTACCCGGA
1 ACGTAGTCATCGGGTCTTACCCGGA
83932796 ATATATTTCC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 92 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
Found at i:83932994 original size:48 final size:48
Alignment explanation
Indices: 83932936--83933701 Score: 1062
Period size: 48 Copynumber: 15.9 Consensus size: 48
83932926 ATATACACAC
*
83932936 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83932984 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83933032 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83933080 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83933128 ATCTCATTCATATTTCACACTAGTCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83933176 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83933224 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83933272 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83933320 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83933368 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83933416 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCATTCGGCTTTAC-C
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA--C--ATATACAT
* * * * * * * ** * *
83933467 A-CAT-ATACATATCTCATATATATTTCACATTAGCCATT-CGGC-TTTAC-C
1 ATC-TCATACATATTTCACA-CTA--GC-CATTCGGCTTTACCACATATACAT
* *
83933515 A-CAT-ATACATATCTCATACATATAGCCATTCGGCTTTACCACATATACAT
1 ATC-TCATACATATTTC--ACA-CTAGCCATTCGGCTTTACCACATATACAT
*
83933565 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83933613 ATCTCATTCATATTTCACACTAGTCATTCGGCTTTACCACATGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83933661 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
83933702 CACATATATA
Statistics
Matches: 653, Mismatches: 49, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
47 8 0.01
48 586 0.90
49 7 0.01
50 22 0.03
51 16 0.02
52 4 0.01
53 2 0.00
54 8 0.01
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83933050 original size:96 final size:96
Alignment explanation
Indices: 83932936--83933701 Score: 1188
Period size: 96 Copynumber: 7.9 Consensus size: 96
83932926 ATATACACAC
*
83932936 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
83933001 CACTAGCCATTTGGCTTTACCACGTATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
83933032 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
83933097 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * * *
83933128 ATCTCATTCATATTTCACACTAGTCATTCGGCTTTACCATATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
83933193 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
83933224 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
83933289 CATTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
83933320 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
83933385 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
83933416 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCATTCGGCTTTACCACATATACATATCT
1 ATCTCATACATATTTCACACT----A----G-----CCATTCGGCTTTACCACATATACATATCT
* *
83933481 CATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
53 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83933525 ATCTCATAC--A--T---A-TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
83933582 CATTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * * *
83933613 ATCTCATTCATATTTCACACTAGTCATTCGGCTTTACCACATGTACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
83933678 CATTAGCCATTCGGCTTTACCACA
66 CACTAGCCATTCGGCTTTACCACA
83933702 CACATATATA
Statistics
Matches: 624, Mismatches: 25, Indels: 42
0.90 0.04 0.06
Matches are distributed among these distances:
88 80 0.13
90 1 0.00
92 1 0.00
93 1 0.00
95 1 0.00
96 454 0.73
97 1 0.00
100 1 0.00
101 1 0.00
102 1 0.00
104 1 0.00
105 1 0.00
107 1 0.00
109 79 0.13
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83933097 original size:144 final size:144
Alignment explanation
Indices: 83932936--83933701 Score: 1188
Period size: 144 Copynumber: 5.3 Consensus size: 144
83932926 ATATACACAC
*
83932936 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
83933001 CACTAGCCATTTGGCTTTACCACGTATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
83933066 TACCACATATACAT
131 TACCACATATACAT
*
83933080 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
83933145 CACTAGTCATTCGGCTTTACCATATATACATATCTCATATATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
83933210 TACCACATATACAT
131 TACCACATATACAT
*
83933224 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
83933289 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
*
83933354 TACCATATATACAT
131 TACCACATATACAT
83933368 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
83933433 CACTAGCCATTCGGCTTTACCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATT
66 CACT----A----G-----CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACT
83933498 AGCCATTCGGCTTTACCACATATACAT
118 AGCCATTCGGCTTTACCACATATACAT
83933525 ATCTCATAC--A--T---A-TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
83933582 CATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGTCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
*
83933647 TACCACATGTACAT
131 TACCACATATACAT
* *
83933661 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
83933702 CACATATATA
Statistics
Matches: 575, Mismatches: 26, Indels: 42
0.89 0.04 0.07
Matches are distributed among these distances:
136 76 0.13
138 1 0.00
140 1 0.00
141 1 0.00
143 1 0.00
144 361 0.63
145 1 0.00
148 1 0.00
149 48 0.08
150 1 0.00
152 1 0.00
153 1 0.00
155 1 0.00
157 80 0.14
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
TACCACATATACAT
Found at i:83933457 original size:13 final size:13
Alignment explanation
Indices: 83933439--83933467 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
83933429 TTCACACTAG
83933439 CCATTCGGCTTTA
1 CCATTCGGCTTTA
83933452 CCATTCGGCTTTA
1 CCATTCGGCTTTA
83933465 CCA
1 CCA
83933468 CATATACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.34, G:0.14, T:0.34
Consensus pattern (13 bp):
CCATTCGGCTTTA
Found at i:83933459 original size:61 final size:61
Alignment explanation
Indices: 83933391--83933515 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
83933381 TTCACACTAG
83933391 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
83933452 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
83933513 CCA
1 CCA
83933516 CATATACATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (61 bp):
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
Found at i:83933467 original size:109 final size:108
Alignment explanation
Indices: 83933343--83933651 Score: 424
Period size: 109 Copynumber: 3.0 Consensus size: 108
83933333 TTCACATTAG
*
83933343 CCATTCGGCTTTACCATATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 CCATTCGGCTTTACCA-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
83933408 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
65 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
83933452 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
1 CCATTCGGCTTTACCA-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
83933517 ATATACATATCTCATAC--A--T---A-TAGCCATTCGGCTTT-
65 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
83933552 --A--C--C---A-C-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 CCATTCGGCTTTACCAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
* *
83933606 TATACATATCTCATTCATATTTCACACTAGTCATTCGGCTTTA
66 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
83933649 CCA
1 CCA
83933652 CATGTACATA
Statistics
Matches: 183, Mismatches: 6, Indels: 32
0.83 0.03 0.14
Matches are distributed among these distances:
88 63 0.34
90 2 0.01
91 1 0.01
92 1 0.01
94 1 0.01
95 1 0.01
96 15 0.08
98 1 0.01
99 1 0.01
101 15 0.08
102 1 0.01
105 1 0.01
107 1 0.01
109 79 0.43
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (108 bp):
CCATTCGGCTTTACCAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
Found at i:83933542 original size:40 final size:40
Alignment explanation
Indices: 83933493--83933625 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
83933483 TATATATTTC
83933493 ACAT-TAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATAGCCATTCGGCTTTACCACATATACATATCTCAT
83933532 ACATATAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATAGCCATTCGGCTTTACCACATATACATATCTCAT
83933572 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 AC--A--T---A-TAGCCATTCGGCTTTACCACATATACATATCTCAT
*
83933620 TCATAT
1 ACATAT
83933626 TTCACACTAG
Statistics
Matches: 84, Mismatches: 1, Indels: 17
0.82 0.01 0.17
Matches are distributed among these distances:
39 4 0.05
40 38 0.45
41 1 0.01
42 1 0.01
44 2 0.02
46 1 0.01
47 1 0.01
48 36 0.43
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (40 bp):
ACATATAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:83933555 original size:88 final size:92
Alignment explanation
Indices: 83933452--83933701 Score: 400
Period size: 88 Copynumber: 2.7 Consensus size: 92
83933442 TTCGGCTTTA
83933452 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
1 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
*
83933517 ATATACATA-TC-TCATA-CATA-TAG
66 ATATACATACTCATCATATCACACTAG
*
83933540 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
83933605 ATATACATATCTCATTCATATTTCACACTAG
66 ATATACATA-CTCA-TCATA--TCACACTAG
* *
83933636 TCATTCGGCTTTACCACATGTACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
1 CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
83933701 A
66 A
83933702 CACATATATA
Statistics
Matches: 149, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
88 73 0.49
90 2 0.01
92 5 0.03
95 3 0.02
96 66 0.44
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (92 bp):
CCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATACTCATCATATCACACTAG
Found at i:83936889 original size:28 final size:28
Alignment explanation
Indices: 83936858--83937014 Score: 131
Period size: 28 Copynumber: 5.5 Consensus size: 28
83936848 CTGACTGATT
*
83936858 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
83936886 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
83936915 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * *
83936943 TCGCACACATAGTGCCTCAACTACTA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
83936972 TGGCACACATAGTGCTC-AGTTGAAGAAC
1 TCGCACACATAGTGCTCGA-TTAAAGAAC
* *
83937000 TTGCACACACAGTGC
1 TCGCACACATAGTGC
83937015 CTCATAACTC
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
27 3 0.03
28 54 0.53
29 43 0.42
30 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:83936918 original size:29 final size:29
Alignment explanation
Indices: 83936885--83936986 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
83936875 GATTAAAGAA
83936885 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
83936914 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* *
83936942 CTCGCACACATAGTGCCTCAACTACTAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
83936971 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
83936987 TCAGTTGAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
28 24 0.39
29 38 0.61
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:83936925 original size:57 final size:57
Alignment explanation
Indices: 83936858--83937018 Score: 243
Period size: 57 Copynumber: 2.8 Consensus size: 57
83936848 CTGACTGATT
* * *
83936858 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
*
83936915 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * *
83936972 TGGCACACATAGTGCTC-AGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGA-TTGAAGAACTCGCACACATAGTGCCTCA
83937019 TAACTCCAGC
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
56 1 0.01
57 95 0.99
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:83937090 original size:40 final size:40
Alignment explanation
Indices: 83937046--83937419 Score: 531
Period size: 40 Copynumber: 9.3 Consensus size: 40
83937036 CCTTCGAGGT
* *
83937046 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
* ** * * *
83937086 TTAGCCCGGATACATTACTAACACGAATGCTCTTCAGAAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
* ** *
83937126 TTAGCCCGGATACATTACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
* *
83937166 TTAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
*
83937206 TTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
83937246 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
83937286 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
83937326 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
*
83937366 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCAGGAC
1 TTAGCCCGGATATAACACT-AGCACGAATGCTCTTCGGGAC
*
83937406 TTAGCCCGGCTATA
1 TTAGCCCGGATATA
83937420 TAACTCTCAA
Statistics
Matches: 315, Mismatches: 18, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 315 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
Found at i:83938751 original size:37 final size:37
Alignment explanation
Indices: 83938697--83938836 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
83938687 TCGAATAGCC
* * *
83938697 CCACACGTAGTTATCGGGTCTTACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
83938734 CCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
83938771 CCACATGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
83938808 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
83938837 ATATATTTCC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:83939035 original size:48 final size:48
Alignment explanation
Indices: 83938977--83939545 Score: 1057
Period size: 48 Copynumber: 11.9 Consensus size: 48
83938967 ATATACACAC
* **
83938977 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCATGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83939025 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83939073 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83939121 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83939169 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83939217 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83939265 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83939313 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83939361 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83939409 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83939457 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83939505 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
83939546 CACATATATA
Statistics
Matches: 510, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 510 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83944884 original size:39 final size:39
Alignment explanation
Indices: 83944837--83945019 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
83944827 AATGTTCGAG
83944837 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
83944876 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
83944915 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
83944954 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
83944994 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
83945020 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:83951447 original size:16 final size:16
Alignment explanation
Indices: 83951423--83951461 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
83951413 ACGTAGTGTC
*
83951423 ATGCAATAGATGAAAG
1 ATGCTATAGATGAAAG
83951439 ATGCTATAGATGAAAG
1 ATGCTATAGATGAAAG
83951455 ATGCTAT
1 ATGCTAT
83951462 GGTAGCATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (16 bp):
ATGCTATAGATGAAAG
Found at i:83955162 original size:34 final size:34
Alignment explanation
Indices: 83955113--83955186 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
83955103 AGTGCCACGA
* *
83955113 TTCACAACTTAGTATGGAAACACCATACCTACAT
1 TTCACAACTCAGTATGGAAACACCATACCCACAT
* * *
83955147 TTCACAACTCGGTATGGAAATACCATACCCACGT
1 TTCACAACTCAGTATGGAAACACCATACCCACAT
83955181 TTCACA
1 TTCACA
83955187 CTTTTCCATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAACACCATACCCACAT
Found at i:83955284 original size:27 final size:27
Alignment explanation
Indices: 83955244--83955301 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
83955234 CACTGAACAG
* * *
83955244 TTTGCTATGTTTGGCACAGTATATCAC
1 TTTGCCATGATTGGCACACTATATCAC
*
83955271 TTTGCCATGATTGGCACACTTTATCAC
1 TTTGCCATGATTGGCACACTATATCAC
83955298 TTTG
1 TTTG
83955302 GCATAGTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (27 bp):
TTTGCCATGATTGGCACACTATATCAC
Found at i:83955438 original size:31 final size:31
Alignment explanation
Indices: 83955395--83955542 Score: 215
Period size: 31 Copynumber: 4.8 Consensus size: 31
83955385 CTTATCACTT
* * *
83955395 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
83955426 GTAGCTGGAGCTACCACTTTTCATTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
83955457 GTAGCCGAAGCTACTACTTTTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
83955488 GTAGCTGAAGCTACCACTTTTCATTAATCAA
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
83955519 GTAGCTGAAGCTACCACTTTTCAC
1 GTAGCTGAAGCTACCACTTTTCAC
83955543 ATTGTACACA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTAATCAG
Found at i:83955465 original size:62 final size:62
Alignment explanation
Indices: 83955395--83955542 Score: 242
Period size: 62 Copynumber: 2.4 Consensus size: 62
83955385 CTTATCACTT
* * * *
83955395 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCTGGAGCTACCACTTTTCATTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
*
83955457 GTAGCCGAAGCTACTACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
1 GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
*
83955519 GTAGCTGAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCAC
83955543 ATTGTACACA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 79 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
Found at i:83955619 original size:33 final size:33
Alignment explanation
Indices: 83955535--83955638 Score: 131
Period size: 33 Copynumber: 3.2 Consensus size: 33
83955525 GAAGCTACCA
* *
83955535 CTTTTCACA-TTGTACACACAAGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
* *
83955568 CTTTTCAAG-TGTACACACAAAGTGCACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
83955600 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
83955633 CTTTTC
1 CTTTTC
83955639 CCGTGTACCT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
32 28 0.47
33 32 0.53
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:83957342 original size:11 final size:11
Alignment explanation
Indices: 83957326--83957378 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
83957316 TATACTAAAT
83957326 AAATAATAATA
1 AAATAATAATA
83957337 AAATAATAAT-
1 AAATAATAATA
* *
83957347 AAATATCTCATTA
1 AAATA-AT-AATA
*
83957360 AAATATTAATA
1 AAATAATAATA
83957371 AAATAATA
1 AAATAATA
83957379 TCTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
AAATAATAATA
Found at i:83957385 original size:31 final size:33
Alignment explanation
Indices: 83957326--83957391 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
83957316 TATACTAAAT
*
83957326 AAATAATAATAAAATAATAATAAATATCTCATTA
1 AAATAATAATAAAATAATAAT-AATATCTAATTA
* *
83957360 AAATATTAATAAAATAAT-AT-CTATCTAATTA
1 AAATAATAATAAAATAATAATAATATCTAATTA
83957391 A
1 A
83957392 TTAATTTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
33 2 0.07
34 17 0.59
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (33 bp):
AAATAATAATAAAATAATAATAATATCTAATTA
Found at i:83960166 original size:29 final size:29
Alignment explanation
Indices: 83960064--83960166 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
83960054 GTGACGAGAT
* *
83960064 TGGCACTGAGTGTGCGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* * * *
83960093 CGGCACTAAGTGTGCAAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* *
83960122 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
83960151 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83960167 TGATTGAGTA
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.02
29 56 0.97
30 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:83967991 original size:29 final size:29
Alignment explanation
Indices: 83967929--83968031 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
83967919 GGTGACAGAT
* * *
83967929 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
83967958 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
83967987 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
*
83968016 TGGTACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83968032 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 57 0.95
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:83970891 original size:48 final size:48
Alignment explanation
Indices: 83970737--83970884 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
83970727 ATATATACAC
* **
83970737 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
83970785 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
83970833 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
83970881 ATCT
1 ATCT
83970885 TGTACATCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:83972197 original size:26 final size:27
Alignment explanation
Indices: 83972152--83972204 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
83972142 TTAAATTCTG
* *
83972152 GCATGCATTCGGACACTTAAAATTTCA
1 GCATACATTCGAACACTTAAAATTTCA
83972179 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAATTTCA
83972205 CTAGCTGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAATTTCA
Found at i:83974573 original size:40 final size:39
Alignment explanation
Indices: 83974525--83974695 Score: 220
Period size: 39 Copynumber: 4.3 Consensus size: 39
83974515 ACGACTAGCT
*
83974525 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
* *
83974565 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
* *
83974605 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCACA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
*
83974644 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
83974683 CGAACGCCTTCGG
1 CAAATGCCTTCGG
83974696 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 71 0.59
40 45 0.38
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:83974639 original size:39 final size:40
Alignment explanation
Indices: 83974525--83974748 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
83974515 ACGACTAGCT
*
83974525 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
* *
83974565 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
83974605 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
83974644 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
83974683 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
83974724 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
83974749 CATCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 69 0.43
40 75 0.47
41 13 0.08
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:83978029 original size:27 final size:27
Alignment explanation
Indices: 83977999--83978063 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
83977989 GATCACTGAA
* *
83977999 CACTTTGCTATCTTTGGCACACTATAT
1 CACTTTGCCATCATTGGCACACTATAT
*
83978026 CACTTTGCCATCATTGGCACACTTTAT
1 CACTTTGCCATCATTGGCACACTATAT
*
83978053 CAATTTGCCAT
1 CACTTTGCCAT
83978064 AGTTCAACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATCATTGGCACACTATAT
Found at i:83978196 original size:31 final size:31
Alignment explanation
Indices: 83978160--83978268 Score: 157
Period size: 31 Copynumber: 3.5 Consensus size: 31
83978150 CTTGTAGCTA
* *
83978160 AAGCTACCACTATTCACTAATCAGGTAGCTG
1 AAGCTACCACTTTTCACTAATCAGGTAGCCG
*
83978191 GAGCTACCACTTTTCACTAATCAGGTAGCCG
1 AAGCTACCACTTTTCACTAATCAGGTAGCCG
* * *
83978222 AAGCTACTAC-TTTCAATGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTAATCAGGTAGCCG
83978252 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
83978269 ATTGTACACA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
30 27 0.40
31 41 0.60
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTAATCAGGTAGCCG
Found at i:83978351 original size:33 final size:32
Alignment explanation
Indices: 83978261--83978373 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 32
83978251 GAAGCTACCA
*
83978261 CTTTTCACA-TTGTACACACAAGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAA-GTGTACATTTC
* *
83978294 CTTTTCAA-TTGTACATACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACAC-AAGTGTACATTTC
*
83978326 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACA-AGTGTACATTTC
*
83978359 CTTTTCCAGTTGTAC
1 CTTTTCAAGTTGTAC
83978374 CTTTTAGGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
32 27 0.39
33 42 0.61
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (32 bp):
CTTTTCAAGTTGTACACACAAGTGTACATTTC
Found at i:83988067 original size:39 final size:39
Alignment explanation
Indices: 83987989--83988108 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
83987979 ATGCAAGACA
83987989 CTGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
83988027 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
83988066 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
83988105 CTGG
1 CTGG
83988109 TGCTGGTAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
38 24 0.30
39 55 0.70
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:83996016 original size:46 final size:48
Alignment explanation
Indices: 83995963--83996137 Score: 143
Period size: 47 Copynumber: 3.7 Consensus size: 48
83995953 TCACTTGTGT
* *
83995963 GAGCTAGTGTATGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGA
* *
83996009 GAGCTAGTGTAAGACCATGTATTGGACATGGCATCAG---CATTGA-GACAA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT-ATG---A
* **
83996057 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTCA-AAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CACATTATGA
* * * *
83996103 TAGCCAGTGTGAGATCATGTCTGGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
83996138 GGCACCTCAC
Statistics
Matches: 103, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
45 5 0.05
46 32 0.31
47 38 0.37
48 26 0.25
49 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGA
Found at i:83996130 original size:94 final size:94
Alignment explanation
Indices: 83995965--83996137 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
83995955 ACTTGTGTGA
* * ** *
83995965 GCTAGTGTATGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTA
*
83996030 TTGGACATGGCATCAGCATTGAGACAAGT
66 TGGGACATGGCATCAGCATTGAGACAAGT
* * *
83996059 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCA-AAGATGATAGCCAGTGTGAGATCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CACAAGATGAGAGCCAGTGTAAGACCATGT
*
83996123 CTGGGACATGGCATC
65 ATGGGACATGGCATC
83996138 GGCACCTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
94 66 0.97
95 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTA
TGGGACATGGCATCAGCATTGAGACAAGT
Found at i:83998475 original size:37 final size:38
Alignment explanation
Indices: 83998399--83998555 Score: 217
Period size: 39 Copynumber: 4.1 Consensus size: 38
83998389 TGTCCAGCAC
*
83998399 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGA-ATAATTCTCGCAT
83998438 ATAGCCTGCGGACATAAAGTCCGG-ATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGAATAATTCTCGCAT
* * *
83998475 ATAGCCTGCGGACATGAATTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACATAAAGTCCGGA-ATAATTCTCGCAT
* * *
83998514 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGA-ATAATTCTCGCAT
83998553 ATA
1 ATA
83998556 TATATTCACA
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
37 35 0.32
39 73 0.68
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (38 bp):
ATAGCCTGCGGACATAAAGTCCGGAATAATTCTCGCAT
Found at i:83998484 original size:76 final size:77
Alignment explanation
Indices: 83998399--83998555 Score: 235
Period size: 76 Copynumber: 2.0 Consensus size: 77
83998389 TGTCCAGCAC
* *
83998399 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATAAAGTCCGG-A
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGGACATAAAGTCCGGAA
83998463 TAATTCTCGCAT
66 TAATTCTCGCAT
* * * * *
83998475 ATAGCCTGCGGACATGAATTCCGGATATAATTCTCGCTTATAGCCTACGGACCTGAAGTCCGGAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGGACATAAAGTCCGGA-
83998540 ATAATTCTCGCAT
65 ATAATTCTCGCAT
83998553 ATA
1 ATA
83998556 TATATTCACA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 56 0.78
78 16 0.22
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (77 bp):
ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGGACATAAAGTCCGGAA
TAATTCTCGCAT
Found at i:84007331 original size:40 final size:40
Alignment explanation
Indices: 84007286--84007452 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
84007276 CGGAATATAA
84007286 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
84007326 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
84007366 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
84007406 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
84007445 CCGGATAT
1 CCGGATAT
84007453 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84007436 original size:80 final size:79
Alignment explanation
Indices: 84007302--84007450 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
84007292 ATAATCACGT
* *
84007302 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
84007367 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
84007382 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
84007445 CCGGAT
64 CCGGAT
84007451 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:84015318 original size:40 final size:40
Alignment explanation
Indices: 84015273--84015439 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
84015263 CGGAATATAA
84015273 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
84015313 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
84015353 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
84015393 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
84015432 CCGGATAT
1 CCGGATAT
84015440 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84015423 original size:80 final size:79
Alignment explanation
Indices: 84015289--84015437 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
84015279 ATAATCACGT
* *
84015289 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
84015354 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
84015369 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
84015432 CCGGAT
64 CCGGAT
84015438 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:84018569 original size:40 final size:40
Alignment explanation
Indices: 84018461--84018670 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
84018451 CGGGATTTAA
* * * * *
84018461 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84018501 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84018541 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84018581 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84018621 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84018661 CCGGATATAT
1 CCGGATATAT
84018671 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84026702 original size:40 final size:40
Alignment explanation
Indices: 84026594--84026803 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
84026584 CGGGATTTAA
* * * * *
84026594 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
84026634 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84026674 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84026714 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84026754 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
84026794 CCGGATATAT
1 CCGGATATAT
84026804 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:84036041 original size:40 final size:40
Alignment explanation
Indices: 84035970--84036137 Score: 259
Period size: 40 Copynumber: 4.2 Consensus size: 40
84035960 CCTTCGAGAT
* *
84035970 TTAG-CCGGATATAGCT-ACTCGCTCAACTGCCTTTGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTTGGGAC
* * *
84036009 TTAGCTCGGATATAGTAACTGGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
*
84036049 TTAGCCCGGATATAGTAACTCGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
84036089 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
84036129 TTAGCCCGG
1 TTAGCCCGG
84036138 TTATCATCAG
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.04
40 112 0.96
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
Found at i:84041068 original size:40 final size:41
Alignment explanation
Indices: 84040939--84041075 Score: 195
Period size: 41 Copynumber: 3.4 Consensus size: 41
84040929 TTACGGCATT
* *
84040939 TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACACCGT
1 TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
* * *
84040980 TATTGCTTTACCTTTTGTGGTGTTTATGAGAAAAATGTCGC
1 TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
* *
84041021 TATTGCTTTACCTTTTGCGGTGTTTATG-CAAAAACGCCAC
1 TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
*
84041061 TAATGCTTTACCTTT
1 TATTGCTTTACCTTT
84041076 ACGGCATTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 22 0.26
41 63 0.74
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.42
Consensus pattern (41 bp):
TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
Found at i:84053356 original size:24 final size:24
Alignment explanation
Indices: 84053329--84053376 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
84053319 AGCTAATGAG
84053329 CTCGGGAAAGAGAAAAGAAAAACT
1 CTCGGGAAAGAGAAAAGAAAAACT
84053353 CTCGGGAAAGAGAAAAGAAAAACT
1 CTCGGGAAAGAGAAAAGAAAAACT
84053377 GACTTTGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.25, T:0.08
Consensus pattern (24 bp):
CTCGGGAAAGAGAAAAGAAAAACT
Found at i:84058011 original size:47 final size:47
Alignment explanation
Indices: 84057899--84058021 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 47
84057889 ATTCGTGTGT
* * **
84057899 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATTGGCCGCATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAGCAAGATGA
* **
84057945 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCAGCAAGATGA
* *
84057993 GGGCTAGTGTAAGACATGTCTGGAACATG
1 GAGCTAGTGTAAGACATGTCTGGGACATG
84058022 TATCAGCCTC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 13 0.20
47 28 0.43
48 24 0.37
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAGCAAGATGA
Found at i:84058829 original size:15 final size:16
Alignment explanation
Indices: 84058793--84058829 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
84058783 ACATATCATT
84058793 TATTTCATTATATCCA
1 TATTTCATTATATCCA
84058809 TATTTCA-TATA-CCA
1 TATTTCATTATATCCA
84058823 TAGTTTC
1 TA-TTTC
84058830 CATGTATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCCA
Found at i:84060768 original size:30 final size:30
Alignment explanation
Indices: 84060734--84060794 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84060724 TCCTTAACTC
84060734 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
84060764 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
84060794 A
1 A
84060795 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:84061706 original size:47 final size:47
Alignment explanation
Indices: 84061606--84061733 Score: 120
Period size: 47 Copynumber: 2.7 Consensus size: 47
84061596 GGGCTATTAC
* * * *
84061606 AGCCAATGTAAGACATGTCTGGGACAT-GCATTGGCTGTGAGATGGT
1 AGCCAGTGTAAGACATGTCTGAGACATGGCATCGACTGTGAGATGGT
* *
84061652 AGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACT-TGAGAT-AT
1 AGCCAGTGTAAGA-CATGTCTGAGACATGGCATCGACTGTGAGATGGT
**
84061698 GAGCCAGTGTAAGATTGTGTCT-AGGACATGGCATCG
1 -AGCCAGTGTAAGA-CATGTCTGA-GACATGGCATCG
84061734 GCACCTTACC
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
46 13 0.19
47 48 0.71
48 7 0.10
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGAGACATGGCATCGACTGTGAGATGGT
Found at i:84069536 original size:29 final size:29
Alignment explanation
Indices: 84069502--84069633 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
84069492 TAATCGATCA
*
84069502 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
84069531 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
84069560 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
84069589 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
84069618 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
84069634 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:84080445 original size:29 final size:27
Alignment explanation
Indices: 84080412--84080482 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
84080402 ATAGTGAATC
84080412 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TA-TCAAACT
84080441 CGCACACTTAGTGCTATATATCAAACT
1 CGCACACTTAGTGCTATATATCAAACT
84080468 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84080483 GTACAATTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 2 0.05
27 21 0.51
29 18 0.44
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATATCAAACT
Found at i:84088426 original size:28 final size:28
Alignment explanation
Indices: 84088361--84088461 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84088351 ATAGTGAATC
*
84088361 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84088390 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84088418 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84088448 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84088462 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84090326 original size:40 final size:40
Alignment explanation
Indices: 84090245--84090348 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
84090235 CTCGCACGAA
* * *
84090245 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *** *
84090285 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
*
84090325 TGTCTTCGGGT-TTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
84090349 CATTCAATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 12 0.22
40 42 0.78
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
Done.