Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 272 of 410
Found at i:84098208 original size:40 final size:40
Alignment explanation
Indices: 84098163--84098330 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
84098153 CGGAATATAA
84098163 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
84098203 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
84098243 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
84098283 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
84098323 CCGGATAT
1 CCGGATAT
84098331 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84098313 original size:80 final size:80
Alignment explanation
Indices: 84098179--84098328 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
84098169 ATAATCACGT
*
84098179 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
84098243 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
84098259 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
84098322 CCCGGAT
64 CCCGGAT
84098329 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:84101585 original size:35 final size:34
Alignment explanation
Indices: 84101511--84101591 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 34
84101501 TGTGAAGTTC
*
84101511 TATTGAACTTGTATATTCGATTTCATATGAGGTTA
1 TATTGAACTTGTATATTCGA-TCCATATGAGGTTA
* * *
84101546 TATTGAATTTGTATATTCGA-CCATGTGAGATGTTT
1 TATTGAACTTGTATATTCGATCCATATGAG--GTTA
84101581 TATTGAACTTG
1 TATTGAACTTG
84101592 AACATTAGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
33 7 0.18
35 32 0.82
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.46
Consensus pattern (34 bp):
TATTGAACTTGTATATTCGATCCATATGAGGTTA
Found at i:84101905 original size:13 final size:13
Alignment explanation
Indices: 84101887--84101912 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84101877 ACTAAGCTAA
84101887 GTTGGCTTACTCT
1 GTTGGCTTACTCT
84101900 GTTGGCTTACTCT
1 GTTGGCTTACTCT
84101913 ATATGCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (13 bp):
GTTGGCTTACTCT
Found at i:84110121 original size:51 final size:49
Alignment explanation
Indices: 84109880--84110093 Score: 338
Period size: 49 Copynumber: 4.4 Consensus size: 49
84109870 ATCAAGATTC
* * *
84109880 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
84109929 GTGAAAATGTATGTATATGTGATAAGGCCAAATGGCCGATATGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
84109978 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
84110027 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
84110076 GTGAAAGTGTATATATAT
1 GTGAAAGTGTATGTATAT
84110094 ATGTGGTAAA
Statistics
Matches: 153, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 153 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:84113252 original size:35 final size:35
Alignment explanation
Indices: 84113204--84113293 Score: 108
Period size: 35 Copynumber: 2.6 Consensus size: 35
84113194 ATTTGAGGTC
* * * *
84113204 ATATTGAGTTTGTACATTCGACTGCTTGTGAAGTT
1 ATATTGAATTTGTATATTCGACTGCATATGAAGTT
* * * *
84113239 ATATTGAACTTGTATATTCGATTTCATATGAGGTT
1 ATATTGAATTTGTATATTCGACTGCATATGAAGTT
84113274 ATATTGAATTTGTATATTCG
1 ATATTGAATTTGTATATTCG
84113294 GCCATATGAG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.46
Consensus pattern (35 bp):
ATATTGAATTTGTATATTCGACTGCATATGAAGTT
Found at i:84113314 original size:35 final size:35
Alignment explanation
Indices: 84113237--84113406 Score: 121
Period size: 35 Copynumber: 4.8 Consensus size: 35
84113227 GCTTGTGAAG
** *
84113237 TTATATTGAACTTGTATATTCGATTTCATATGAG--G
1 TTATATTGAACTTGTATATTCG--GCCATATGAGATA
*
84113272 TTATATTGAATTTGTATATTCGGCCATATGAGATA
1 TTATATTGAACTTGTATATTCGGCCATATGAGATA
* * * * ** * *
84113307 TTTTATTGAACTTGAACATTAGGTTACATGTGATGA
1 TTATATTGAACTTGTATATTCGGCCATATGAGAT-A
* *
84113343 TAAT-TTGAACTTATATATTCGGCCATATGAGATA
1 TTATATTGAACTTGTATATTCGGCCATATGAGATA
* * * *
84113377 TTATAATGAACCTTGTGTATTTGGCTATAT
1 TTATATTGAA-CTTGTATATTCGGCCATAT
84113407 AGGTAAGTTT
Statistics
Matches: 101, Mismatches: 29, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
33 8 0.08
34 4 0.04
35 71 0.70
36 18 0.18
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (35 bp):
TTATATTGAACTTGTATATTCGGCCATATGAGATA
Found at i:84113314 original size:70 final size:70
Alignment explanation
Indices: 84113237--84113397 Score: 180
Period size: 70 Copynumber: 2.3 Consensus size: 70
84113227 GCTTGTGAAG
* * * * *
84113237 TTATATTGAACTTGTATATTCGATTTCATATGAGG-TTATATTGAATTTGTATATTCGGCCATAT
1 TTATATTGAACTTGTATATTAGATTACATATGAGGATAAT-TTGAACTTATATATTCGGCCATAT
84113301 GAGATA
65 GAGATA
* * * * * *
84113307 TTTTATTGAACTTGAACATTAGGTTACATGTGATGATAATTTGAACTTATATATTCGGCCATATG
1 TTATATTGAACTTGTATATTAGATTACATATGAGGATAATTTGAACTTATATATTCGGCCATATG
84113372 AGATA
66 AGATA
* *
84113377 TTATAATGAACCTTGTGTATT
1 TTATATTGAA-CTTGTATATT
84113398 TGGCTATATA
Statistics
Matches: 73, Mismatches: 16, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
70 63 0.86
71 10 0.14
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (70 bp):
TTATATTGAACTTGTATATTAGATTACATATGAGGATAATTTGAACTTATATATTCGGCCATATG
AGATA
Found at i:84128637 original size:28 final size:28
Alignment explanation
Indices: 84128593--84128681 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
84128583 AGCATGGCTG
* *
84128593 CCAG-AACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
84128620 CTAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
84128648 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
84128676 CCAGAA
1 CCAGAA
84128682 TGCTTCCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 3 0.05
28 54 0.95
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:84128844 original size:26 final size:25
Alignment explanation
Indices: 84128788--84128846 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
84128778 ATCAACCCTA
* *
84128788 AGGGTATAATGGTCATTTTGCACCT
1 AGGGTATAATGGTAATTTTGCACAT
84128813 AGGGGTATAATGGTAATTTT-CATACAT
1 A-GGGTATAATGGTAATTTTGC--ACAT
84128840 AGGGTAT
1 AGGGTAT
84128847 TTTAGTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 23 0.79
27 4 0.14
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (25 bp):
AGGGTATAATGGTAATTTTGCACAT
Found at i:84129951 original size:20 final size:18
Alignment explanation
Indices: 84129912--84129962 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
84129902 GGCTATAGAG
84129912 GAAAATAAGAAGA-A-GA
1 GAAAATAAGAAGAGAGGA
84129928 GAAAATAGATGAAGAGAGGA
1 GAAAATA-A-GAAGAGAGGA
84129948 GAAAATAAGAAGAGA
1 GAAAATAAGAAGAGA
84129963 AAAGAATTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 7 0.23
17 1 0.03
18 12 0.39
19 2 0.06
20 9 0.29
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.08
Consensus pattern (18 bp):
GAAAATAAGAAGAGAGGA
Found at i:84129968 original size:18 final size:18
Alignment explanation
Indices: 84129912--84129968 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
84129902 GGCTATAGAG
84129912 GAAAATAAG-A-AGAAGA
1 GAAAATAAGAAGAGAAGA
*
84129928 GAAAATAGATGAAGAGAGGA
1 GAAAATA-A-GAAGAGAAGA
*
84129948 GAAAATAAGAAGAGAAAA
1 GAAAATAAGAAGAGAAGA
84129966 GAA
1 GAA
84129969 TTGTCAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 7 0.21
17 1 0.03
18 12 0.35
19 2 0.06
20 12 0.35
ACGTcount: A:0.65, C:0.00, G:0.28, T:0.07
Consensus pattern (18 bp):
GAAAATAAGAAGAGAAGA
Found at i:84131984 original size:10 final size:10
Alignment explanation
Indices: 84131969--84132007 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
84131959 TGCTTTTGTA
84131969 CATGATATGC
1 CATGATATGC
84131979 CATGATATGC
1 CATGATATGC
84131989 ACATGATATGC
1 -CATGATATGC
84132000 CATGATAT
1 CATGATAT
84132008 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:84131994 original size:21 final size:21
Alignment explanation
Indices: 84131968--84132007 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
84131958 TTGCTTTTGT
84131968 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
84131989 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
84132008 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:84132136 original size:24 final size:25
Alignment explanation
Indices: 84132054--84132124 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
84132044 AGGAAGTGCT
*
84132054 AAAAA-GGCTTTGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTATC
84132078 AAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTATC
*
84132103 AAAAAGGGCTTTACCCCAGTTT
1 AAAAAGGGCTTTGCCCCAGTTT
84132125 TTAAAAGAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
24 5 0.11
25 39 0.89
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATC
Found at i:84135776 original size:11 final size:10
Alignment explanation
Indices: 84135749--84135787 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
84135739 TGCTTTTGTA
84135749 CATGATATGC
1 CATGATATGC
84135759 CATGATATGC
1 CATGATATGC
*
84135769 AGATGATATGC
1 -CATGATATGC
84135780 CATGATAT
1 CATGATAT
84135788 ATTCACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:84135868 original size:25 final size:25
Alignment explanation
Indices: 84135834--84135904 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
84135824 AGGAAGTGCT
*
84135834 AAAAGGGCTTTGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCTAGTTTATCA
*
84135859 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTATCA
84135884 AAAAGGGCTTTGCCCTAGTTT
1 AAAAGGGCTTTGCCCTAGTTT
84135905 TTAAAAGAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTATCA
Found at i:84135927 original size:50 final size:50
Alignment explanation
Indices: 84135834--84135928 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
84135824 AGGAAGTGCT
**
84135834 AAAAGGGCTTTGCCCTAGTTTATCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTATCGAAAAGGGCTAGGCCCCAGTTTATCA
*
84135884 AAAAGGGCTTTGCCCTAGTTT-T-TAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCTAGTTTATCGAAAAG-GGCTAGGCC-CCAGTT
84135929 ATATGATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 5 0.12
49 8 0.20
50 27 0.68
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCTAGTTTATCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:84140520 original size:3 final size:3
Alignment explanation
Indices: 84140512--84140562 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
84140502 TTTCTATAGC
84140512 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
84140560 ATA
1 ATA
84140563 GATATTTTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84141444 original size:3 final size:3
Alignment explanation
Indices: 84141436--84141467 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
84141426 ATTCGATCAT
84141436 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
84141468 TATTTAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:84143082 original size:146 final size:144
Alignment explanation
Indices: 84142796--84143074 Score: 407
Period size: 146 Copynumber: 1.9 Consensus size: 144
84142786 AAATCATTAC
* * *
84142796 TTTTCTTAAAACTCAAAACTTTATTTCGAAATAGTTTAAAAAATCAAAACTTTGTTTTAAAAATT
1 TTTTCTTAAAACTAAAAACTTTATTTCGAAATAGTTAAAAAAATAAAAACTTTGTTTTAAAAATT
* * *
84142861 TAATATTTCCTTTAAAATGACTTAAAAAACATGTTTTTATTTTTTAAAATCTAAACTTTCTCCTT
66 TAAGATTTACTTTAAAATGACTAAAAAAACATGTTTTTATTTTTTAAAATCTAAACTTTCTCCTT
84142926 TTTAATAAAAATAT
131 TTTAATAAAAATAT
* * ** *
84142940 TTTTCTTAAAGATTAAAAATTTTATTTTTAAATAGTTCAAAAAAATAAAAACTTTGTTTTAAAAT
1 TTTTCTTAAA-ACTAAAAACTTTATTTCGAAATAGTT-AAAAAAATAAAAACTTTGTTTTAAAAA
*
84143005 TTTAAGCTTTACTTTAAAATGACTAAAAAAACA-GATTTTTATTTTTTAAAATCTAAACTTTCTC
64 TTTAAGATTTACTTTAAAATGACTAAAAAAACATG-TTTTTATTTTTTAAAATCTAAACTTTCTC
*
84143069 TTTTTT
128 CTTTTT
84143075 GTAAAAAAAA
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
144 10 0.08
145 22 0.18
146 87 0.73
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.46
Consensus pattern (144 bp):
TTTTCTTAAAACTAAAAACTTTATTTCGAAATAGTTAAAAAAATAAAAACTTTGTTTTAAAAATT
TAAGATTTACTTTAAAATGACTAAAAAAACATGTTTTTATTTTTTAAAATCTAAACTTTCTCCTT
TTTAATAAAAATAT
Found at i:84146192 original size:42 final size:42
Alignment explanation
Indices: 84146133--84146662 Score: 562
Period size: 42 Copynumber: 12.6 Consensus size: 42
84146123 CTTCATATAC
84146133 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCT-TCA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCT-A
* *
84146175 AATGCAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* *
84146217 AATGCAATAAAAAGTAAATGGACCTCCATACCT-GTGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAG-GCCTCTA
* * * * *
84146259 TATGCAATAAAAAGCAAATGGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * * *
84146301 AATGTAATGAAATGTGAATGGACCTCCACACCTAGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * * *
84146343 AATGCAATGAAATGTGAATGGACCTCTACACCTAGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * *
84146385 AATGCAATGAAATGTGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * * *
84146427 AATGCAATGAAAAGTAAATGAAGCTCAACACTTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * * *
84146469 AATGCAACGAAAAGTAAAAGGACCTCTACACCTAGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * * ***
84146511 AATACAAGGAAAAGTAAAGGGACCTCCACACCTAAATCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
* * * * * * *
84146553 AATACAATGAAAAGTGAATAGACTTCCA-AACTTGGATCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGG-CCTCTA
** * ** * * *
84146595 AATGTGATGAAAAGTGAATAAACCTCCAAACCTGGGCCCCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
*
84146637 AATGTAATGAAAAGTAAATGGACCTC
1 AATGCAATGAAAAGTAAATGGACCTC
84146663 ATACGTACCA
Statistics
Matches: 418, Mismatches: 65, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
41 4 0.01
42 407 0.97
43 7 0.02
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
Found at i:84152885 original size:40 final size:40
Alignment explanation
Indices: 84152839--84153012 Score: 201
Period size: 40 Copynumber: 4.3 Consensus size: 40
84152829 CTCGCACAAG
* * *
84152839 GCCTTCGGGTCTTAGCCCGG-ATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAAT
* * *
84152879 GCCTTCGGGTCTTAGCCCGG-ATATAG-CAATTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTC-ACTAGCACAAAT
* * *
84152919 GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACCAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
*
84152959 GCCTTCGGGACTTAGCCCGGAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
*
84152999 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
84153013 ACCCCGTTAG
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 115 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
Found at i:84157178 original size:49 final size:47
Alignment explanation
Indices: 84157004--84157320 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
84156994 CCCTTCGGGA
* * * * * *
84157004 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
84157051 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
84157098 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
84157145 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
84157194 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
84157243 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
84157290 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
84157321 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 158 0.64
48 2 0.01
49 88 0.35
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:84157200 original size:96 final size:94
Alignment explanation
Indices: 84157004--84157320 Score: 483
Period size: 96 Copynumber: 3.3 Consensus size: 94
84156994 CCCTTCGGGA
* * * * * *
84157004 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
84157069 CTTCACATTCATCACATTGGCCATTCGGC
66 CTTCACATTCATCACATCGGCCATTAGGC
*
84157098 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCGGCCTTATCAC--ATATATA
*
84157162 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
84157194 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
84157259 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
*
84157290 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
84157321 GCGTAAAATC
Statistics
Matches: 204, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 58 0.28
95 1 0.00
96 110 0.54
97 2 0.01
98 33 0.16
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:84159762 original size:49 final size:47
Alignment explanation
Indices: 84159645--84159961 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
84159635 GATTTTACGC
* * *
84159645 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
84159692 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
84159739 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
84159788 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
84159837 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
84159884 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
84159931 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
84159962 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:84159769 original size:96 final size:93
Alignment explanation
Indices: 84159645--84159961 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
84159635 GATTTTACGC
84159645 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
84159710 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
84159739 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
84159804 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
84159837 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
84159902 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
84159931 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
84159962 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:84163933 original size:30 final size:30
Alignment explanation
Indices: 84163897--84163997 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
84163887 GACAAGATTG
* * *
84163897 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
84163927 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
84163955 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
84163984 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
84163998 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:84164009 original size:29 final size:28
Alignment explanation
Indices: 84163926--84164001 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
84163916 AAAATTGTAC
* *
84163926 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
84163954 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
84163983 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
84164002 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:84166533 original size:37 final size:37
Alignment explanation
Indices: 84166483--84166567 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
84166473 GGAATATGTT
*
84166483 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
84166520 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
84166557 CCGGGTAAGAC
1 CCGGGTAAGAC
84166568 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:84168344 original size:29 final size:29
Alignment explanation
Indices: 84168302--84168494 Score: 350
Period size: 29 Copynumber: 6.7 Consensus size: 29
84168292 CGAATGAATA
*
84168302 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATT
84168331 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATT
*
84168360 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATT
84168389 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATT
84168418 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATT
*
84168447 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATT
*
84168476 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
84168495 TTTTTCAACA
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATT
Found at i:84172217 original size:40 final size:40
Alignment explanation
Indices: 84172158--84172326 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
84172148 CGGGACTTTA
* * *
84172158 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
84172198 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
84172238 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
84172278 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
84172318 CCCGGATAT
1 CCCGGATAT
84172327 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:84180133 original size:40 final size:40
Alignment explanation
Indices: 84180074--84180242 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
84180064 CGGGACTTTA
* * *
84180074 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
84180114 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
84180154 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
84180194 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
84180234 CCCGGATAT
1 CCCGGATAT
84180243 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:84183372 original size:40 final size:40
Alignment explanation
Indices: 84183313--84183481 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
84183303 CGGGACTTTA
* * *
84183313 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
84183353 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
84183393 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
84183433 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
84183473 CCCGGATAT
1 CCCGGATAT
84183482 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:84191281 original size:40 final size:40
Alignment explanation
Indices: 84191222--84191390 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
84191212 CGGGACTTTA
* * *
84191222 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
84191262 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
84191302 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
84191342 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
84191382 CCCGGATAT
1 CCCGGATAT
84191391 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:84193110 original size:37 final size:37
Alignment explanation
Indices: 84193060--84193144 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
84193050 CTGTCACATT
*
84193060 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
84193097 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
84193134 CCGGGTAAGAC
1 CCGGGTAAGAC
84193145 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:84194821 original size:21 final size:20
Alignment explanation
Indices: 84194797--84194881 Score: 75
Period size: 20 Copynumber: 4.2 Consensus size: 20
84194787 CTCTTTATTT
*
84194797 TTTTTTATTTTTTTGTTTTC
1 TTTTTTGTTTTTTTGTTTTC
* * *
84194817 CTTTTTGTTTTGTTGTTTTG
1 TTTTTTGTTTTTTTGTTTTC
*
84194837 TTGTTTTGTTGTTTT-TTTTC
1 TT-TTTTGTTTTTTTGTTTTC
*
84194857 TTTTTT-TTTGTGTTTGTTTTA
1 TTTTTTGTTT-T-TTTGTTTTC
84194878 TTTT
1 TTTT
84194882 GGCAAAATCT
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
18 2 0.04
19 5 0.10
20 26 0.51
21 18 0.35
ACGTcount: A:0.02, C:0.04, G:0.13, T:0.81
Consensus pattern (20 bp):
TTTTTTGTTTTTTTGTTTTC
Found at i:84194832 original size:8 final size:8
Alignment explanation
Indices: 84194821--84194851 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
84194811 GTTTTCCTTT
84194821 TTGTTTTG
1 TTGTTTTG
84194829 TTGTTTTG
1 TTGTTTTG
84194837 TTGTTTTG
1 TTGTTTTG
84194845 TTGTTTT
1 TTGTTTT
84194852 TTTTCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (8 bp):
TTGTTTTG
Found at i:84210844 original size:22 final size:23
Alignment explanation
Indices: 84210822--84210873 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
84210812 CTGTTTTTAC
84210822 TTTTATTCTACTTTAAGACTACT
1 TTTTATTCTACTTTAAGACTACT
* *
84210845 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTCTACTTTAAGAC-TACT
84210867 TTTTATT
1 TTTTATT
84210874 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTACTTTAAGACTACT
Found at i:84214918 original size:40 final size:40
Alignment explanation
Indices: 84214777--84214961 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
84214767 TCGAATGATG
*
84214777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATA
* * * * * *
84214817 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA
* *
84214857 TCTGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * * * *
84214896 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* **
84214936 ACCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84214962 AGCGAGTCGT
Statistics
Matches: 115, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
39 31 0.27
40 77 0.67
41 7 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:84214943 original size:79 final size:81
Alignment explanation
Indices: 84214777--84214961 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
84214767 TCGAATGATG
* * *
84214777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAGACCCGGACTAAGATCCGAAGGCATT
*
84214841 CGTGCGAGTTAATAAA
66 CGTGCGAGTCAATAAA
* * **
84214857 TCTGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAGACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAGACCCGGACTAAGAT-CCGAAGGCAT
*
84214919 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATA-AA
**
84214937 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84214962 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAGACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:84218354 original size:49 final size:48
Alignment explanation
Indices: 84218295--84218466 Score: 163
Period size: 49 Copynumber: 3.5 Consensus size: 48
84218285 GTTGTGTGTT
* *
84218295 AGTGTAAGACCTGTCTAGGACATGGCATTGATAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCT-GGACATGGCATT-AGACTCGATAGATGAAAGCC
* * **
84218344 AGTGTAAGACCTGTCTGAGACATGGCATTAGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTG-GACATGGCATTAGACTCGATAGATGAAAGCC
* * **
84218393 AGTGTAAGACCTGTCTGGAACATGGCA-TCGACTTTGAT--ATGTTAGCC
1 AGTGTAAGACCTGTCTGG-ACATGGCATTAGAC-TCGATAGATGAAAGCC
84218440 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCT-GGACATGGC
84218467 GTCGGCATCT
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
47 16 0.15
48 19 0.18
49 69 0.66
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGACATGGCATTAGACTCGATAGATGAAAGCC
Found at i:84224828 original size:49 final size:49
Alignment explanation
Indices: 84224632--84224845 Score: 151
Period size: 49 Copynumber: 4.5 Consensus size: 49
84224622 GACGAGTGCT
* * *
84224632 AGTGTAAGACATGTCTGGGACATGG-ATCGACCTCGAGATAT-ACAAG-C
1 AGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGA-AAGTC
* * * * *
84224679 TAGTGTAAGACCTATCTGGGACATGGCGTC-AACTTG-T-TGTG--TGTC
1 -AGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAAGTC
* * * * ** * *
84224724 AGCGTAAGACTTGTTTGGGACATGGCATCGACAC-CGATGGATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGATATATGAAAGTC
* *
84224773 AATGTAAGACCTATCTGGGACATGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAAGTC
* *
84224822 AGTGTAAAACCT-GCTGGGACATGG
1 AGTGTAAGACCTATCTGGGACATGG
84224846 AATTGACTTT
Statistics
Matches: 124, Mismatches: 32, Indels: 20
0.70 0.18 0.11
Matches are distributed among these distances:
44 25 0.20
45 3 0.02
46 4 0.03
47 2 0.02
48 39 0.31
49 51 0.41
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAAGTC
Found at i:84231959 original size:46 final size:46
Alignment explanation
Indices: 84231909--84232084 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
84231899 TGTTTGGGCA
*
84231909 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84231955 TCCGAGCTCGTTGAGTTGTGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
84232000 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
84232048 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84232085 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
45 1 0.01
46 61 0.56
47 27 0.25
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84232064 original size:93 final size:93
Alignment explanation
Indices: 84231905--84232075 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
84231895 AGGATGTTTG
* *
84231905 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
*
84231970 TTGTGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
*
84231998 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
84232063 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
84232076 CGCTTATGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:84239500 original size:43 final size:43
Alignment explanation
Indices: 84239432--84239562 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 43
84239422 AAAGCTCGTA
* * * *
84239432 CAATGCTAATGTCCCAAACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAAATGTGGTCTTACACGTAATCACATAT
*
84239475 CAATGCC-ACTGTCCCAGACA-G-GGTCTTACACGTAAATCACAAAT
1 CAATGCCAAC-GTCCCA-A-ATGTGGTCTTACACGT-AATCACATAT
* *
84239519 CGATGCCAACGTCCCAAATGTGGTCTTACACGAAATCACATAT
1 CAATGCCAACGTCCCAAATGTGGTCTTACACGTAATCACATAT
84239562 C
1 C
84239563 GAAACCCTAT
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.03
43 35 0.47
44 34 0.46
45 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAAATGTGGTCTTACACGTAATCACATAT
Found at i:84239533 original size:44 final size:44
Alignment explanation
Indices: 84239441--84239564 Score: 150
Period size: 44 Copynumber: 2.9 Consensus size: 44
84239431 ACAATGCTAA
* * *
84239441 TGTCCCAAACGTGGTCTTACATGT-AATCACATATCAATGCCAC
1 TGTCCCAAATGTGGTCTTACACGTAAATCACATATCGATGCCAC
*
84239484 TGTCCCAGACA-G-GGTCTTACACGTAAATCACAAATCGATGCCAAC
1 TGTCCCA-A-ATGTGGTCTTACACGTAAATCACATATCGATGCC-AC
84239529 -GTCCCAAATGTGGTCTTACACG-AAATCACATATCGA
1 TGTCCCAAATGTGGTCTTACACGTAAATCACATATCGA
84239565 AACCCTATTT
Statistics
Matches: 71, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
42 1 0.01
43 33 0.46
44 34 0.48
45 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
TGTCCCAAATGTGGTCTTACACGTAAATCACATATCGATGCCAC
Found at i:84245548 original size:40 final size:40
Alignment explanation
Indices: 84245504--84245728 Score: 351
Period size: 40 Copynumber: 5.6 Consensus size: 40
84245494 AACCCAATTA
* * ** *
84245504 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* *
84245544 CCTTCGGGACTTAACCCGGAAATAGCAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
84245584 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
84245624 CCTTCGGGACTTAACCCGGGAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
84245664 CCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* *
84245704 CCTTCGGGACTTAACCTGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
84245729 TCCTCAATTG
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.18
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:84249899 original size:55 final size:55
Alignment explanation
Indices: 84249839--84249946 Score: 216
Period size: 55 Copynumber: 2.0 Consensus size: 55
84249829 CCTATTATAC
84249839 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATCT
1 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATCT
84249894 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACAT
1 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACAT
84249947 ATATGCCATG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.41, C:0.29, G:0.04, T:0.27
Consensus pattern (55 bp):
ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATCT
Found at i:84250896 original size:44 final size:44
Alignment explanation
Indices: 84250799--84250926 Score: 183
Period size: 44 Copynumber: 3.0 Consensus size: 44
84250789 CTCATACAAC
**
84250799 GCCAACGTCCCAGACGTGGTCTTACATGT-AATCACATATCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACATAAATCACATATCGAT
*
84250842 GCC-ACTGTCCCAGACAG-GGTCTTACACATAAATCACAAATCGAT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACATAAATCACATATCGAT
84250886 GCCAACGTCCCAGACGTGGTCTTACACA-AAATCACATATCG
1 GCCAACGTCCCAGACGTGGTCTTACACATAAATCACATATCG
84250927 GAACCCTATG
Statistics
Matches: 76, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
42 2 0.03
43 35 0.46
44 37 0.49
45 2 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (44 bp):
GCCAACGTCCCAGACGTGGTCTTACACATAAATCACATATCGAT
Found at i:84259074 original size:18 final size:19
Alignment explanation
Indices: 84259051--84259088 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
84259041 ATATTGGTAT
84259051 ATGAATGAAAA-TGA-TTGA
1 ATGAAT-AAAAGTGACTTGA
84259069 ATGAATAAAAGTGACTTGA
1 ATGAATAAAAGTGACTTGA
84259088 A
1 A
84259089 GGAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGAATAAAAGTGACTTGA
Found at i:84259362 original size:4 final size:4
Alignment explanation
Indices: 84259339--84259400 Score: 52
Period size: 4 Copynumber: 15.5 Consensus size: 4
84259329 TAAATAAACA
* * * * * *
84259339 AATG AGTG AATG AGTG AATG AATG GATG GATG AATG AATG GATA AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
* *
84259387 AATT AATG ATTG AA
1 AATG AATG AATG AA
84259401 ATTGGGGCAC
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (4 bp):
AATG
Found at i:84260396 original size:34 final size:34
Alignment explanation
Indices: 84260353--84260420 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
84260343 CGATGTACAC
84260353 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
1 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
84260387 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
1 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
84260421 CACATTGGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (34 bp):
ATTAATCAATTTCATCGATAAAAGAATAAACAAA
Found at i:84261218 original size:3 final size:3
Alignment explanation
Indices: 84261210--84261265 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
84261200 ATTCGATCCT
84261210 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84261258 TTA TTA TT
1 TTA TTA TT
84261266 TGATTTAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:84262735 original size:146 final size:147
Alignment explanation
Indices: 84262578--84262880 Score: 363
Period size: 146 Copynumber: 2.1 Consensus size: 147
84262568 TGGTGGCCAG
* * *
84262578 ATTTTTTTTTTTTTGTAAAATC-AAAGTTT-T-CTTTAAAAAAA-A-TATTACTTTTCTTAAAAA
1 ATTTTTATTTTTTT-CAAAATCTAAAATTTCTCCTTTAAAAAAACACTA-T-C-TTTCTTAAAAA
* *
84262638 TCAAAAC-TTTATTTCGAAATAGTTAAAAAAATCAAAATTTTATTTTAATAA-CTTAAACTTTCC
62 TCAAAACTTTTATTTCGAAATAGTTAAAAAAATAAAAAATTTATTTTAA-AATCTTAAACTTTCC
84262701 TTTAAAATGACTTAAAAAAACAT
126 TTTAAAATGAC-TAAAAAAACAT
** *
84262724 ATTTTTA--TTTTTCAAAATCTAAAATTTCTCCTTTAAAAAAACACTATCTTTCTTAATGATTAA
1 ATTTTTATTTTTTTCAAAATCTAAAATTTCTCCTTTAAAAAAACACTATCTTTCTTAAAAATCAA
* * * *
84262787 AACTTTTATTTTGAAATAGTTGAAAAAATAAAAAATTTGTTTTAAAATTTTAAACTTTCCTTTAA
66 AACTTTTATTTCGAAATAGTTAAAAAAATAAAAAATTTATTTTAAAATCTTAAACTTTCCTTTAA
**
84262852 AATGACTAAAAAAATGT
131 AATGACTAAAAAAACAT
84262869 ATTTTTATTTTT
1 ATTTTTATTTTT
84262881 AAAATCTAAA
Statistics
Matches: 134, Mismatches: 14, Indels: 17
0.81 0.08 0.10
Matches are distributed among these distances:
143 6 0.04
144 11 0.08
145 34 0.25
146 76 0.57
147 5 0.04
148 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (147 bp):
ATTTTTATTTTTTTCAAAATCTAAAATTTCTCCTTTAAAAAAACACTATCTTTCTTAAAAATCAA
AACTTTTATTTCGAAATAGTTAAAAAAATAAAAAATTTATTTTAAAATCTTAAACTTTCCTTTAA
AATGACTAAAAAAACAT
Found at i:84263767 original size:41 final size:40
Alignment explanation
Indices: 84263706--84263791 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
84263696 TATAATCACT
* *
84263706 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
* * * * *
84263746 TTTTAGTATCATTTTTTATTTGTTTCTTATTTTAATATTTG
1 TTTTAGTAT-ATTTTTAATTTGTGTATTATTTTAAGAATTG
84263787 TTTTA
1 TTTTA
84263792 AATGTATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
Found at i:84264927 original size:32 final size:32
Alignment explanation
Indices: 84264891--84264955 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
84264881 TGTATGCATT
84264891 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
84264923 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
84264955 T
1 T
84264956 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:84273838 original size:40 final size:39
Alignment explanation
Indices: 84273794--84273919 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
84273784 GGGACTCAAC
*
84273794 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
84273834 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
84273874 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
84273914 CCGGAT
1 CCGGAT
84273920 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:84273878 original size:80 final size:80
Alignment explanation
Indices: 84273733--84273919 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
84273723 GCTACACATT
* * *
84273733 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
84273797 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
84273813 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
84273876 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
84273894 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
84273920 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:84281909 original size:40 final size:39
Alignment explanation
Indices: 84281865--84281990 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
84281855 GGGACTCAAC
*
84281865 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
84281905 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
84281945 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
84281985 CCGGAT
1 CCGGAT
84281991 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:84281949 original size:80 final size:80
Alignment explanation
Indices: 84281804--84281990 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
84281794 GCTACACATT
* * *
84281804 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
84281868 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
84281884 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
84281947 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
84281965 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
84281991 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:84285860 original size:21 final size:20
Alignment explanation
Indices: 84285825--84285868 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
84285815 AATATTAACT
*
84285825 TATGTATTTATATTACTATAA
1 TATGTATTTATATTA-AATAA
84285846 TATGT-TTTATAATTAAATAA
1 TATGTATTTAT-ATTAAATAA
84285866 TAT
1 TAT
84285869 ATTTGATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (20 bp):
TATGTATTTATATTAAATAA
Found at i:84291641 original size:15 final size:16
Alignment explanation
Indices: 84291606--84291644 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
84291596 AACTAAAATA
*
84291606 AAAATAAACATTAAGT
1 AAAATAAACAATAAGT
*
84291622 AAAATAAATAATAA-T
1 AAAATAAACAATAAGT
84291637 AAAATAAA
1 AAAATAAA
84291645 AGCACTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAATAAACAATAAGT
Found at i:84294172 original size:15 final size:17
Alignment explanation
Indices: 84294152--84294183 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
84294142 ACATAAGATC
84294152 ACAAACA-AGTA-AAAA
1 ACAAACACAGTACAAAA
84294167 ACAAACACAGTACAAAA
1 ACAAACACAGTACAAAA
84294184 GTTGGTGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.69, C:0.19, G:0.06, T:0.06
Consensus pattern (17 bp):
ACAAACACAGTACAAAA
Found at i:84299002 original size:25 final size:25
Alignment explanation
Indices: 84298966--84299013 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
84298956 CCCATTATCC
84298966 ATTAGTCCTAATTTACCTTTTTACT
1 ATTAGTCCTAATTTACCTTTTTACT
*
84298991 ATTAGTCTTAATTTACCTTTTTA
1 ATTAGTCCTAATTTACCTTTTTA
84299014 AGTTCTCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTAGTCCTAATTTACCTTTTTACT
Found at i:84304708 original size:2 final size:2
Alignment explanation
Indices: 84304701--84304734 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
84304691 AGATAACTTT
84304701 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84304735 AACAATATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:84305884 original size:2 final size:2
Alignment explanation
Indices: 84305871--84305922 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
84305861 GCTAAAATAG
*
84305871 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
84305913 TC TC TT TC TC
1 TC TC TC TC TC
84305923 GCTCACTTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:84312240 original size:6 final size:7
Alignment explanation
Indices: 84312201--84312267 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
84312191 ATTTAATCCC
*
84312201 CAATTTC
1 CAATTTT
84312208 CAATTTT
1 CAATTTT
84312215 ACAA-TTT
1 -CAATTTT
84312222 CAATCTTT
1 CAAT-TTT
*
84312230 AAATTTT
1 CAATTTT
84312237 -AATTTT
1 CAATTTT
84312243 CAATTTT
1 CAATTTT
84312250 CAA-TTT
1 CAATTTT
84312256 CGAATTTT
1 C-AATTTT
84312264 CAAT
1 CAAT
84312268 CCTCAATCCT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
6 13 0.25
7 26 0.50
8 13 0.25
ACGTcount: A:0.33, C:0.15, G:0.01, T:0.51
Consensus pattern (7 bp):
CAATTTT
Found at i:84312319 original size:15 final size:15
Alignment explanation
Indices: 84312301--84312334 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
84312291 AAATTCTTTT
*
84312301 TTTTGAAATTTATTC
1 TTTTCAAATTTATTC
*
84312316 TTTTCAATTTTATTC
1 TTTTCAAATTTATTC
84312331 TTTT
1 TTTT
84312335 TTTTTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTTCAAATTTATTC
Found at i:84318718 original size:26 final size:26
Alignment explanation
Indices: 84318685--84318737 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
84318675 TAAATATACT
84318685 AAAACAAATCATTACTAGCCATTCTA
1 AAAACAAATCATTACTAGCCATTCTA
84318711 AAAACAAATCATTACTAGCCATTCTA
1 AAAACAAATCATTACTAGCCATTCTA
84318737 A
1 A
84318738 TGACTAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (26 bp):
AAAACAAATCATTACTAGCCATTCTA
Found at i:84319466 original size:39 final size:40
Alignment explanation
Indices: 84319398--84319476 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 40
84319388 ATTTCTATTC
* *
84319398 ATAATCAATCAATAACAATCACTTGTTCAGT-ACTTTAAT
1 ATAATCAATCAATAACAATCACTTATTCAGTCACATTAAT
* *
84319437 ATAATCATTCAATAATC-ATCAGTTATTCAGTCACATTAAT
1 ATAATCAATCAATAA-CAATCACTTATTCAGTCACATTAAT
84319477 CTTTCAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
39 26 0.76
40 8 0.24
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.37
Consensus pattern (40 bp):
ATAATCAATCAATAACAATCACTTATTCAGTCACATTAAT
Found at i:84319996 original size:47 final size:47
Alignment explanation
Indices: 84319927--84320069 Score: 146
Period size: 47 Copynumber: 3.0 Consensus size: 47
84319917 ACCAACACAC
* **
84319927 CAGTACGACACTCAGTGCCTCATCGACTT-TGCCGAAGTAAACAGTAA
1 CAGTACGACACTCAATGCCTCATCGACTTAAACCGAAGT-AACAGTAA
* *
84319974 CAGTACGATACTCAATACCTCATCGGA-TTAAACCGAAGTAACAGTAA
1 CAGTACGACACTCAATGCCTCATC-GACTTAAACCGAAGTAACAGTAA
* * * *
84320021 TAGTACGACACACAAGGTGCCTCATCGACTTAAAGTCGAAGTAATAGTA
1 CAGTACGACACTCAA--TGCCTCATCGACTTAAA-CCGAAGTAACAGTA
84320070 CAACACTTAT
Statistics
Matches: 79, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
47 43 0.54
48 11 0.14
49 13 0.16
50 12 0.15
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (47 bp):
CAGTACGACACTCAATGCCTCATCGACTTAAACCGAAGTAACAGTAA
Found at i:84320067 original size:44 final size:44
Alignment explanation
Indices: 84320016--84320107 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
84320006 CCGAAGTAAC
* *
84320016 AGTAATAGTACGACACACA-AGGTGCCTCATCGACTTAAAGTCGA
1 AGTAATAGTACAACACACATA-GTGCCTCATCGACTCAAAGTCGA
** *
84320060 AGTAATAGTACAACACTTATAGTGCCTCATCGACTCAAGGTCGA
1 AGTAATAGTACAACACACATAGTGCCTCATCGACTCAAAGTCGA
84320104 AGTA
1 AGTA
84320108 TCCCTAAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 41 0.98
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTAATAGTACAACACACATAGTGCCTCATCGACTCAAAGTCGA
Found at i:84321339 original size:2 final size:2
Alignment explanation
Indices: 84321328--84321357 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
84321318 TTGTTTCTTT
84321328 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84321358 TAGTTTCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:84321807 original size:3 final size:3
Alignment explanation
Indices: 84321799--84321834 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
84321789 TTTATTTTTC
84321799 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84321835 AACAACAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:84324327 original size:54 final size:54
Alignment explanation
Indices: 84324262--84324761 Score: 359
Period size: 54 Copynumber: 9.3 Consensus size: 54
84324252 TTAGTTTACC
*
84324262 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-GATTTGTA
* * *
84324316 AAATTATCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-GATTTGTA
** * ** *** * *
84324370 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * *
84324424 AAATTACCAAAGTACCCCT-GATTTATAAAATTACCTAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTCGATTTGTA
* *
84324478 AAATTACCAAAATA-CCCTCAGTTTGCAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * ** * *** **
84324532 AAATTACTAAAATACTCCT-GTAAGATAGAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCCTAGTTTG-TAAAATTACCAAAATACCCTCGATTTGTA
* ***** * * * *** **
84324586 GAATTACTGTTTTA-CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTCGATTTGTA
** * * ** ***
84324640 AAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCGATTTGTA
* *
84324694 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-GATTTGTA
* *
84324748 GAATTACCGAAATA
1 AAATTACCAAAATA
84324762 TAGGGTAGAA
Statistics
Matches: 356, Mismatches: 79, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
53 16 0.04
54 326 0.92
55 14 0.04
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCGATTTGTA
Found at i:84324397 original size:81 final size:81
Alignment explanation
Indices: 84324262--84324546 Score: 346
Period size: 81 Copynumber: 3.5 Consensus size: 81
84324252 TTAGTTTACC
* *
84324262 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTATCA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCCTC-GATTTGTAAAATTATCA
84324325 AAATACCC-CTAGCTTGTA
64 AAATACCCTC-AGCTTGTA
* * ** **
84324343 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAA
*
84324408 ATACCCTCAACTTGTA
66 ATACCCTCAGCTTGTA
* * * *
84324424 AAATTACCAAAGTACCCCTGATTTATAAAATTACCT-AAATATCCTCGATTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTA-CTAAAATACCCTCGATTTGTAAAATTATCAA
* *
84324488 AATACCCTCAGTTTGCA
65 AATACCCTCAGCTTGTA
*
84324505 AAATTACTAAAATA-CCCTCGATTTGTAAAATTACTAAAATAC
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACTAAAATAC
84324547 TCCTGTAAGA
Statistics
Matches: 173, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
80 6 0.03
81 162 0.94
82 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAA
ATACCCTCAGCTTGTA
Found at i:84324740 original size:27 final size:26
Alignment explanation
Indices: 84324262--84324761 Score: 304
Period size: 27 Copynumber: 18.5 Consensus size: 26
84324252 TTAGTTTACC
84324262 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATA-CCCTGA-TTTGTA
*
84324289 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGATTTGTA
* *
84324316 AAATTATCAAAATACCCCT-AGCTTGTA
1 AAATTACCAAAATA-CCCTGA-TTTGTA
*
84324343 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCCTGATTTGTA
** **
84324370 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
*** * *
84324397 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
* *
84324424 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATA-CCCTGATTTGTA
* *
84324451 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
* *
84324478 AAATTACCAAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTGA-TTTGTA
*
84324505 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCT-GATTTGTA
* **
84324532 AAATTACTAAAATACTCCTG-TAAGATA
1 AAATTACCAAAATAC-CCTGATTTG-TA
* *** **
84324559 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCT-GATTTGTA
* ***** *
84324586 GAATTACTGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCT-GATTTGTA
* *** **
84324613 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCT-GATTTGTA
** * **
84324640 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-TGATTTGTA
***
84324667 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACCAAAATACCCT-GATTTGTA
*
84324694 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGATTTGTA
*
84324721 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCCTGATTTGTA
* *
84324748 GAATTACCGAAATA
1 AAATTACCAAAATA
84324762 TAGGGTAGAA
Statistics
Matches: 387, Mismatches: 71, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
26 14 0.04
27 358 0.93
28 15 0.04
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGATTTGTA
Found at i:84324792 original size:27 final size:27
Alignment explanation
Indices: 84324762--84324936 Score: 273
Period size: 27 Copynumber: 6.6 Consensus size: 27
84324752 TACCGAAATA
84324762 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
84324789 TAGGGTAGAATTATCGCAATACCCCTT
1 TAGGGTAGAATTACCGAAATACCCCTG
84324816 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
84324843 TAGGGTAGAATTACCGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
84324870 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
84324897 TAGGGTAGAATTACCGAGATA-CCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
84324923 T-GGGTAAAATTACC
1 TAGGGTAGAATTACC
84324937 ATTTTGCCCC
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
25 12 0.09
26 5 0.04
27 120 0.88
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:84325415 original size:22 final size:22
Alignment explanation
Indices: 84325363--84325427 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
84325353 TTAAAGCCTT
* *
84325363 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
84325385 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
84325407 TTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
84325428 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:84325615 original size:27 final size:27
Alignment explanation
Indices: 84325585--84325687 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
84325575 TATTCTATTA
*
84325585 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTTTGCCACAATATCTGTTTCT
*
84325612 AGTGGCTATGCCACAAATATCTG-TTCT
1 AGTGGCTTTGCCAC-AATATCTGTTTCT
* * *
84325639 GGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTTTGCCACAATATCTGTTTCT
* * *
84325666 GGTGACTTTGTCACAATATCTG
1 AGTGGCTTTGCCACAATATCTG
84325688 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
AGTGGCTTTGCCACAATATCTGTTTCT
Found at i:84325644 original size:54 final size:53
Alignment explanation
Indices: 84325586--84325687 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
84325576 ATTCTATTAA
* * * *
84325586 GTGGCTTTGCCACATTATCTGTTTCTAGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCAC-AATATCTGTTCTG
* * *
84325640 GTGGCTCTGCCACAATATCTGTATCTGGTGACTTTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATATCTG
84325688 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTAGTGACTATGCCACAATATCTGTTCTG
Found at i:84325856 original size:6 final size:6
Alignment explanation
Indices: 84325847--84325980 Score: 107
Period size: 6 Copynumber: 21.8 Consensus size: 6
84325837 AGTTTGTTAC
* *
84325847 CTGATA CTGATT CTGATT CTAATT CTG-TT ACCTGATAT -TGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGAT-T CTGATT CTGATT
* * *
84325896 TTGATT CTG-TT ACCTGATC CTGATT CTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT--T
*
84325946 CTGATT CTGATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
84325981 AATGTTTCTT
Statistics
Matches: 105, Mismatches: 10, Indels: 26
0.74 0.07 0.18
Matches are distributed among these distances:
5 7 0.07
6 84 0.80
7 10 0.10
8 3 0.03
9 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:84325879 original size:31 final size:31
Alignment explanation
Indices: 84325841--84325971 Score: 154
Period size: 31 Copynumber: 4.0 Consensus size: 31
84325831 TTTTTGAGTT
84325841 TGTTACCTGATACTGATTCTGATTCTAATTC
1 TGTTACCTGATACTGATTCTGATTCTAATTC
* * *
84325872 TGTTACCTGATATTGATTCTGATTTTGATTC
1 TGTTACCTGATACTGATTCTGATTCTAATTC
*
84325903 TGTTACCTGATCCTGATTCTGATTCTGATTCTGATTC
1 TGTTACCTGA---T-A--CTGATTCTGATTCTAATTC
* *
84325940 TGTCACCTGATTCTGATTCTGATTCTAATTC
1 TGTTACCTGATACTGATTCTGATTCTAATTC
84325971 T
1 T
84325972 AGTTCTGATA
Statistics
Matches: 86, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
31 57 0.66
34 2 0.02
35 1 0.01
37 26 0.30
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (31 bp):
TGTTACCTGATACTGATTCTGATTCTAATTC
Found at i:84325894 original size:37 final size:36
Alignment explanation
Indices: 84325848--84325978 Score: 137
Period size: 37 Copynumber: 3.7 Consensus size: 36
84325838 GTTTGTTACC
*
84325848 TGATACTGATTCTGATTCTAATTCTGTTACCTGA--
1 TGATTCTGATTCTGATTCTAATTCTGTTACCTGATT
* * *
84325882 T-A-T-TGATTCTGATTTTGATTCTGTTACCTGATCC
1 TGATTCTGATTCTGATTCTAATTCTGTTACCTGAT-T
* *
84325916 TGATTCTGATTCTGATTCTGATTCTGTCACCTGATT
1 TGATTCTGATTCTGATTCTAATTCTGTTACCTGATT
* *
84325952 CTGATTCTGATTCTAATTCTAGTTCTG
1 -TGATTCTGATTCTGATTCTAATTCTG
84325979 ATAATGTTTC
Statistics
Matches: 81, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
31 26 0.32
33 1 0.01
34 2 0.02
35 1 0.01
36 1 0.01
37 50 0.62
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (36 bp):
TGATTCTGATTCTGATTCTAATTCTGTTACCTGATT
Found at i:84328495 original size:80 final size:80
Alignment explanation
Indices: 84328411--84328559 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
84328401 TATGGTAACC
* * * *
84328411 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
84328475 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
84328491 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
84328556 CCGG
66 CCGG
84328560 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:84328501 original size:40 final size:38
Alignment explanation
Indices: 84328452--84328559 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
84328442 ATCACGATTT
*
84328452 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
84328492 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
84328532 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
84328560 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:84336517 original size:40 final size:40
Alignment explanation
Indices: 84336473--84336698 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
84336463 GCTACTCGTT
* * *
84336473 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
84336513 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
84336553 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
84336593 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
84336633 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
84336674 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
84336699 CATCATTCGA
Statistics
Matches: 172, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 3 0.02
40 156 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:84344681 original size:40 final size:41
Alignment explanation
Indices: 84344637--84344861 Score: 279
Period size: 40 Copynumber: 5.7 Consensus size: 41
84344627 GCTACTCGTT
* * *
84344637 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
84344677 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
84344717 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
84344757 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
84344797 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
84344838 CAAA-GCCTTC-GGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
84344862 CATCATTCGA
Statistics
Matches: 172, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 13 0.08
40 149 0.87
41 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:84346823 original size:123 final size:123
Alignment explanation
Indices: 84346602--84346825 Score: 324
Period size: 123 Copynumber: 1.8 Consensus size: 123
84346592 GAATTATGTG
* * * * * * *
84346602 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
84346667 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTGTGTTTGAGCCTTAGTAACGA
*
84346725 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
84346790 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
84346826 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
122 1 0.01
123 87 0.99
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTGTGTTTGAGCCTTAGTAACGA
Found at i:84346947 original size:40 final size:40
Alignment explanation
Indices: 84346820--84346949 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
84346810 ATGCTGGAAA
* *
84346820 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
84346860 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
84346900 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
84346940 TTATATCCGG
1 TTATATCCGG
84346950 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:84346948 original size:80 final size:80
Alignment explanation
Indices: 84346782--84346949 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
84346772 CAATTGAATG
* * *
84346782 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
84346847 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
84346862 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
84346926 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
84346942 ATATCCGG
1 ATATCCGG
84346950 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:84354838 original size:124 final size:124
Alignment explanation
Indices: 84354616--84354840 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
84354606 GAATTATGTG
* * * ** * * *
84354616 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
84354681 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
84354740 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
84354805 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
84354841 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:84354962 original size:40 final size:40
Alignment explanation
Indices: 84354835--84354964 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
84354825 ATGCTGGAAA
* *
84354835 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
84354875 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
84354915 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
84354955 TTATATCCGG
1 TTATATCCGG
84354965 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:84354963 original size:80 final size:80
Alignment explanation
Indices: 84354797--84354964 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
84354787 CAATTGAATG
* * *
84354797 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
84354862 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
84354877 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
84354941 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
84354957 ATATCCGG
1 ATATCCGG
84354965 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:84361357 original size:27 final size:26
Alignment explanation
Indices: 84361327--84361388 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
84361317 ATTTACTAAA
*
84361327 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAAGTA-CAAAATTACCATT
* *
84361354 ATACCCTTAGGTACAAAATTACCATT
1 ATACCCCTAAGTACAAAATTACCATT
84361380 ATACCCCTA
1 ATACCCCTA
84361389 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (26 bp):
ATACCCCTAAGTACAAAATTACCATT
Found at i:84361601 original size:27 final size:27
Alignment explanation
Indices: 84361494--84361605 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
84361484 GAGGAAGCGT
84361494 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
* * * * *
84361521 TTTGGTGGCTCTACCATAAATATTTGTT
1 TCTGGTGGCTCTGCCA-CAATATCTGTA
*
84361549 TCTAGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
84361576 TCTGGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
84361602 TCTG
1 TCTG
84361606 ACAGCCATGC
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.06
27 52 0.75
28 13 0.19
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:84365038 original size:22 final size:23
Alignment explanation
Indices: 84364982--84365038 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 23
84364972 ATCTTCCTGG
*
84364982 CCTTAGCACATTCAAACTGCATA
1 CCTTAGCACATTCAAACTGCACA
* * *
84365005 ACATCGCA-ATTCAAACTGC-CA
1 CCTTAGCACATTCAAACTGCACA
*
84365026 CCTTGGCACATTC
1 CCTTAGCACATTC
84365039 CTAGCATGGT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 6 0.23
22 15 0.58
23 5 0.19
ACGTcount: A:0.32, C:0.33, G:0.11, T:0.25
Consensus pattern (23 bp):
CCTTAGCACATTCAAACTGCACA
Found at i:84368704 original size:17 final size:18
Alignment explanation
Indices: 84368682--84368715 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
84368672 CTTCATTCCC
84368682 TCATTCATCA-TCCCTCA
1 TCATTCATCATTCCCTCA
84368699 TCATTCATCATTCCCTC
1 TCATTCATCATTCCCTC
84368716 TCCTCTCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.21, C:0.41, G:0.00, T:0.38
Consensus pattern (18 bp):
TCATTCATCATTCCCTCA
Found at i:84368786 original size:23 final size:23
Alignment explanation
Indices: 84368756--84368802 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
84368746 TCCCCACGCC
84368756 TAGCATCATCTCTTCATATAGAT
1 TAGCATCATCTCTTCATATAGAT
84368779 TAGCATCATCTCTTCATATAGAT
1 TAGCATCATCTCTTCATATAGAT
84368802 T
1 T
84368803 TCAGCAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (23 bp):
TAGCATCATCTCTTCATATAGAT
Found at i:84370251 original size:22 final size:22
Alignment explanation
Indices: 84370226--84370270 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
84370216 ATTGAATGTA
84370226 CTTAATTTGATAATATATAGAT
1 CTTAATTTGATAATATATAGAT
84370248 CTTAATTTGATAATATATAGAT
1 CTTAATTTGATAATATATAGAT
84370270 C
1 C
84370271 AAGATAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (22 bp):
CTTAATTTGATAATATATAGAT
Found at i:84370609 original size:24 final size:24
Alignment explanation
Indices: 84370582--84370671 Score: 96
Period size: 23 Copynumber: 3.8 Consensus size: 24
84370572 CAGCTCTTAA
*
84370582 GAGCTTACTGTTTTTAGCTCGTTG
1 GAGCTTACTGTTTTCAGCTCGTTG
* *
84370606 GAGCTTATTGTTCTCAGCTCGTAT-
1 GAGCTTACTGTTTTCAGCTCGT-TG
* *
84370630 GAGTTTACTG-TTTCAGCTCGTAG
1 GAGCTTACTGTTTTCAGCTCGTTG
*
84370653 GAGCTTACT-ATTTCAGCTC
1 GAGCTTACTGTTTTCAGCTC
84370672 AATAGAGCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
23 27 0.49
24 27 0.49
25 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCGTTG
Found at i:84370649 original size:23 final size:23
Alignment explanation
Indices: 84370572--84370671 Score: 103
Period size: 24 Copynumber: 4.3 Consensus size: 23
84370562 GGACTCACCA
* *
84370572 CAGCTCTTAAGAGCTTACTGTTTT
1 CAGCTCGTATGAGCTTACTG-TTT
* *
84370596 TAGCTCGT-TGGAGCTTATTGTTCT
1 CAGCTCGTAT-GAGCTTACTGTT-T
*
84370620 CAGCTCGTATGAGTTTACTGTTT
1 CAGCTCGTATGAGCTTACTGTTT
* *
84370643 CAGCTCGTAGGAGCTTACTATTT
1 CAGCTCGTATGAGCTTACTGTTT
84370666 CAGCTC
1 CAGCTC
84370672 AATAGAGCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
23 29 0.46
24 33 0.52
25 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGTTT
Found at i:84370679 original size:23 final size:23
Alignment explanation
Indices: 84370572--84370682 Score: 71
Period size: 23 Copynumber: 4.7 Consensus size: 23
84370562 GGACTCACCA
* * *
84370572 CAGCTCTTAAGAGCTTACTGTTTT
1 CAGCTCATAGGAGCTTACT-ATTT
* * * * *
84370596 TAGCTCGTTGGAGCTTATTGTTCT
1 CAGCTCATAGGAGCTTACTATT-T
* * * *
84370620 CAGCTCGTATGAGTTTACTGTTT
1 CAGCTCATAGGAGCTTACTATTT
*
84370643 CAGCTCGTAGGAGCTTACTATTT
1 CAGCTCATAGGAGCTTACTATTT
84370666 CAGCTCAATA-GAGCTTA
1 CAGCTC-ATAGGAGCTTA
84370683 TTGTCCATCA
Statistics
Matches: 70, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
23 36 0.51
24 34 0.49
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (23 bp):
CAGCTCATAGGAGCTTACTATTT
Found at i:84372423 original size:20 final size:21
Alignment explanation
Indices: 84372385--84372424 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
84372375 AGTTTATTTA
84372385 TGTTATAATTGTTGCAAAATG
1 TGTTATAATTGTTGCAAAATG
84372406 TGTT-TAATT-TTGCTAAAAT
1 TGTTATAATTGTTGC-AAAAT
84372425 CTATTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAAATG
Found at i:84374451 original size:42 final size:43
Alignment explanation
Indices: 84374403--84374496 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
84374393 AGATTTATGA
* * * * * *
84374403 GTAAGACCATGTTTGGGACATAGGCATCGTATCT-AATTTCAT
1 GTAAGACCATGTCTAGGACAGAGGCATCGAAACTGAATTACAT
* *
84374445 GTAAGACCCTGTCTAGGATAGAGGCATCGAAACTGAATTACAT
1 GTAAGACCATGTCTAGGACAGAGGCATCGAAACTGAATTACAT
84374488 GTAAGACCA
1 GTAAGACCA
84374497 CGTCCAAGAC
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 27 0.64
43 15 0.36
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (43 bp):
GTAAGACCATGTCTAGGACAGAGGCATCGAAACTGAATTACAT
Found at i:84374912 original size:5 final size:5
Alignment explanation
Indices: 84374888--84374923 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
84374878 TACCAATTTG
84374888 TAAAA -AAAA T-AAA T-AAA TAAAA TAAAA TAAAA TAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAA
84374924 GAACACACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.41
5 17 0.59
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:84375581 original size:17 final size:19
Alignment explanation
Indices: 84375559--84375603 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 19
84375549 ACTACTGCAG
84375559 CTAACTCTAAAT-A-GTGC
1 CTAACTCTAAATCATGTGC
*
84375576 CTAA--CTAATTCATGTGC
1 CTAACTCTAAATCATGTGC
84375593 CTAACTCTAAA
1 CTAACTCTAAA
84375604 CCCCCATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
15 5 0.23
16 1 0.05
17 12 0.55
19 4 0.18
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (19 bp):
CTAACTCTAAATCATGTGC
Found at i:84380023 original size:49 final size:49
Alignment explanation
Indices: 84379967--84380116 Score: 286
Period size: 49 Copynumber: 3.1 Consensus size: 49
84379957 ATGATAAGGC
84379967 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
84380016 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
84380065 TGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
84380112 TGAAA
1 TGAAA
84380117 TATATGTGTG
Statistics
Matches: 101, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
47 47 0.47
49 54 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:84380257 original size:37 final size:37
Alignment explanation
Indices: 84380203--84380293 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
84380193 AACTTGGAAA
*
84380203 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
84380241 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
84380278 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
84380294 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:84382796 original size:35 final size:33
Alignment explanation
Indices: 84382707--84382801 Score: 102
Period size: 35 Copynumber: 2.8 Consensus size: 33
84382697 TGGACATGAA
*
84382707 ATTA-AACATACAAACAATCACATTTGGACAAT
1 ATTATAACATACAAACAACCACATTTGGACAAT
* * *
84382739 ATTATAACATGTAAAAACAACCACATTTGGGCCAT
1 ATTATAACA--TACAAACAACCACATTTGGACAAT
*
84382774 CTTTATAACATACAAACAAACCACATTT
1 -ATTATAACATACAAAC-AACCACATTT
84382802 AATTATTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
32 4 0.08
33 4 0.08
34 6 0.12
35 30 0.58
36 8 0.15
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.26
Consensus pattern (33 bp):
ATTATAACATACAAACAACCACATTTGGACAAT
Found at i:84388251 original size:40 final size:40
Alignment explanation
Indices: 84388164--84388314 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
84388154 AATTGAATGA
* * * **
84388164 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
84388204 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
84388245 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
* *
84388284 TATCCGGGCTAAGACCTGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
84388315 AAATCGTGAT
Statistics
Matches: 89, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.06
40 81 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:84388328 original size:40 final size:40
Alignment explanation
Indices: 84388245--84388346 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
84388235 TAGTGGCTAC
* * **
84388245 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
84388285 ATCCGGGCTAAGACCTGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
84388325 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
84388347 CTTGGTGCGG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:84394768 original size:13 final size:13
Alignment explanation
Indices: 84394750--84394780 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
84394740 TTAGCTTGGG
*
84394750 TAAATTTTGTTTT
1 TAAATTTTATTTT
84394763 TAAATTTTATTTT
1 TAAATTTTATTTT
84394776 TAAAT
1 TAAAT
84394781 GAATAAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (13 bp):
TAAATTTTATTTT
Found at i:84397051 original size:18 final size:18
Alignment explanation
Indices: 84397028--84397065 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
84397018 ATAAGTGACG
**
84397028 TTTTGAAAGTTAATAACT
1 TTTTGAAAGAGAATAACT
84397046 TTTTGAAAGAGAATAACT
1 TTTTGAAAGAGAATAACT
84397064 TT
1 TT
84397066 GTGATAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (18 bp):
TTTTGAAAGAGAATAACT
Found at i:84403591 original size:40 final size:40
Alignment explanation
Indices: 84403521--84403618 Score: 139
Period size: 40 Copynumber: 2.5 Consensus size: 40
84403511 AAACCAAGTA
* *
84403521 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAACA-G
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAA-ATG
84403560 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATG
84403600 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
84403619 TTATCATCCG
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
39 15 0.28
40 39 0.72
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
Found at i:84423940 original size:22 final size:22
Alignment explanation
Indices: 84423915--84423959 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
84423905 TTTAATAAAA
84423915 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
84423937 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
84423959 A
1 A
84423960 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:84428536 original size:22 final size:22
Alignment explanation
Indices: 84428511--84428564 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
84428501 TTTAATAAAA
84428511 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
84428533 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
*
84428555 ACAATATCTA
1 AAAATATCTA
84428565 TAAATTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:84438252 original size:9 final size:9
Alignment explanation
Indices: 84438240--84438278 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
84438230 TCGAATTGAC
*
84438240 TTAATCGAG
1 TTAATCGAA
84438249 TTAATCGAA
1 TTAATCGAA
84438258 TTAATCGAA
1 TTAATCGAA
84438267 TTAACTCGAA
1 TTAA-TCGAA
84438277 TT
1 TT
84438279 TTTTTTCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (9 bp):
TTAATCGAA
Found at i:84441481 original size:41 final size:41
Alignment explanation
Indices: 84441436--84441514 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
84441426 AAATAATTTA
* *
84441436 GAATCAATTTAAACAAGAAAAAATTGATTCAAAATAGCAAT
1 GAATCAATTTAAACAACAAAAAATCGATTCAAAATAGCAAT
* * * *
84441477 GAATCGATTTAAACATCAAACAATCGATTCAAAGTAGC
1 GAATCAATTTAAACAACAAAAAATCGATTCAAAATAGC
84441515 TACAACACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.24
Consensus pattern (41 bp):
GAATCAATTTAAACAACAAAAAATCGATTCAAAATAGCAAT
Done.