Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 276 of 410
Found at i:85322236 original size:24 final size:25
Alignment explanation
Indices: 85322209--85322258 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
85322199 TTATTAATAT
85322209 AAACATTTTAAA-CTAAACTAGAAA
1 AAACATTTTAAATCTAAACTAGAAA
* *
85322233 AAACATTTTAAATCTTAATTAGAAA
1 AAACATTTTAAATCTAAACTAGAAA
85322258 A
1 A
85322259 TTTCTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.30
Consensus pattern (25 bp):
AAACATTTTAAATCTAAACTAGAAA
Found at i:85323346 original size:43 final size:43
Alignment explanation
Indices: 85323209--85323362 Score: 129
Period size: 43 Copynumber: 3.6 Consensus size: 43
85323199 ACATAGGATT
* *
85323209 TCGATATGTGATTTCGTGTAAGACCAC-ATCTGGGAC-GTTGGCA
1 TCGATATTTGATTTCATGTAAGACC-CTATCTGGGACAG-TGGCA
* * * * *
85323252 TCGAT-TTGAGATTTACATGTAAGACCGTGTCTGAGACA-TCAGCA
1 TCGATATT-TGATTT-CATGTAAGACCCTATCTGGGACAGT-GGCA
* * *
85323296 TCG-TATTTGATTTCGTGTAAGACCCTATTTGGGACAGTGGTA
1 TCGATATTTGATTTCATGTAAGACCCTATCTGGGACAGTGGCA
*
85323338 TCGATATTTGATTACATGTAAGACC
1 TCGATATTTGATTTCATGTAAGACC
85323363 ACGTCTGGGA
Statistics
Matches: 86, Mismatches: 17, Indels: 16
0.72 0.14 0.13
Matches are distributed among these distances:
42 24 0.28
43 37 0.43
44 25 0.29
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCCTATCTGGGACAGTGGCA
Found at i:85323372 original size:43 final size:43
Alignment explanation
Indices: 85323209--85323381 Score: 122
Period size: 43 Copynumber: 4.0 Consensus size: 43
85323199 ACATAGGATT
* * *
85323209 TCGATATGTGATTTCGTGTAAGACCACATCTGGGAC-GTTGGCA
1 TCGATATTTGATTACATGTAAGACCACATCTGGGACAG-TGGCA
* *** * *
85323252 TCGAT-TTGAGATTTACATGTAAGACCGTGTCTGAGACA-TCAGCA
1 TCGATATT-TGA-TTACATGTAAGACCACATCTGGGACAGT-GGCA
* * * *
85323296 TCG-TATTTGATTTCGTGTAAGACC-CTATTTGGGACAGTGGTA
1 TCGATATTTGATTACATGTAAGACCAC-ATCTGGGACAGTGGCA
* * *
85323338 TCGATATTTGATTACATGTAAGACCACGTCTGGGATATTGGCA
1 TCGATATTTGATTACATGTAAGACCACATCTGGGACAGTGGCA
85323381 T
1 T
85323382 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
42 25 0.26
43 43 0.45
44 28 0.29
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACATCTGGGACAGTGGCA
Found at i:85328454 original size:48 final size:47
Alignment explanation
Indices: 85328393--85328519 Score: 168
Period size: 46 Copynumber: 2.7 Consensus size: 47
85328383 CGGCCACATT
* *
85328393 ACGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGGG
1 ACGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATCGAG
* * *
85328441 ACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAG
1 ACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCGAG
*
85328487 ATGTA-AGCCAGTGTAAGACATGTCTGGGACATG
1 ACG-AGAGCCAGTGTAAGACATGTCTGGGACATG
85328520 TATTGGCTAT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 38 0.54
47 15 0.21
48 17 0.24
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (47 bp):
ACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCGAG
Found at i:85328534 original size:46 final size:46
Alignment explanation
Indices: 85328395--85328534 Score: 151
Period size: 46 Copynumber: 3.0 Consensus size: 46
85328385 GCCACATTAC
* * *
85328395 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ATTGGGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGAT
* *
85328443 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGAT
* *
85328489 GTA-AGCCAGTGTAAGACATGTCTGGGACATGTATTGGCTATGAGAT
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAT
85328535 ATTTCAGTGT
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.03
46 46 0.58
47 16 0.20
48 15 0.19
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAT
Found at i:85328603 original size:50 final size:49
Alignment explanation
Indices: 85328538--85328668 Score: 133
Period size: 50 Copynumber: 2.7 Consensus size: 49
85328528 ATGAGATATT
*
85328538 TCAGTGTAAGTCCATGTTTGGGACATGGCATCGACATAGATATGT-GATAG
1 TCAGTGTAAGACCATGTTTGGGACATGGCATCGACATAGAT-T-TCGATAG
* * * *
85328588 -CTAGTGTAAGACCATGTCTT-GGACATGGCGTCGGCCTCGATTTCGATAG
1 TC-AGTGTAAGACCATGT-TTGGGACATGGCATCGACATAGATTTCGATAG
* * *
85328637 TCAATGTAAAACCATGTCTGGGACATGGCATC
1 TCAGTGTAAGACCATGTTTGGGACATGGCATC
85328669 AACTTGATGG
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
48 2 0.03
49 31 0.46
50 32 0.48
51 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
TCAGTGTAAGACCATGTTTGGGACATGGCATCGACATAGATTTCGATAG
Found at i:85336211 original size:46 final size:45
Alignment explanation
Indices: 85336066--85336279 Score: 200
Period size: 46 Copynumber: 4.6 Consensus size: 45
85336056 TTTGTGTGCT
* **
85336066 AGTGTAAGACATGTCTGGGACATGCATCGGAAACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-ATCAAGATGAGAGCC
* ** * *
85336112 AGTGTAAGACCATATCTGGGACATGGCATCGGTATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-ATCAAGATGAGAGCC
*
85336160 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-ATCAAGATG-AGAGCC
* * * * *
85336206 TGTGTAAGACATGTCTGGGACATGCATCGGCT-ACGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGATCAAGATGA-GAGCC
85336250 AGTGTAAGACCATGTCTGGGACATAGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
85336280 AACACGTATA
Statistics
Matches: 140, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.09
45 16 0.11
46 58 0.41
47 27 0.19
48 24 0.17
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGATCAAGATGAGAGCC
Found at i:85336306 original size:48 final size:45
Alignment explanation
Indices: 85336207--85336327 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 45
85336197 ATGTAAGCCT
** *
85336207 GTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGTGTCA
1 GTGTAAGACCATGTCTGGGACATGCATCAACTACGAGAAGTGTCA
85336251 GTGTAAGACCATGTCTGGGACATAGCATCAAC-ACGTATAGAAGTGTCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCAACTACG---AGAAGTGTCA
*
85336299 GTGTAAGACCATGTTTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACAT-GCATC
85336328 GGCATTATAC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
44 8 0.12
45 17 0.25
46 6 0.09
48 36 0.54
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
GTGTAAGACCATGTCTGGGACATGCATCAACTACGAGAAGTGTCA
Found at i:85338813 original size:108 final size:110
Alignment explanation
Indices: 85338614--85338814 Score: 266
Period size: 108 Copynumber: 1.8 Consensus size: 110
85338604 TTTAAGGATA
* * * *
85338614 CCATGTAAGACCATGCTAAGGCATGGCAATTTGTAAGGTTTCCAAGGCAAGGATGCCATGTAATA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTTGGAAGGTTTCCAAGGCAAGGATACCATGTAAGA
* *
85338679 CCATGTCAAGACGTGGCATTGATAAGTTACTATAAGGAAAACGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAACGTC
* *
85338724 CCATGTAAGACCATGCCAAGGTATGG-AA-TTGG-AGAG-TTCATAAGGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTTGGAAG-GTTTC-CAAGGCAAGGATACCATGTAA
* *
85338785 GACCATGTCGAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
85338815 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
107 5 0.06
108 48 0.61
109 2 0.03
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTTGGAAGGTTTCCAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAACGTC
Found at i:85339072 original size:16 final size:16
Alignment explanation
Indices: 85339051--85339081 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85339041 ATAAATTTGA
85339051 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
85339067 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
85339082 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:85344913 original size:40 final size:40
Alignment explanation
Indices: 85344784--85344915 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
85344774 AAGCCAAGTA
* * * *
85344784 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
85344823 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
85344863 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
85344903 CCTTCGGGACTTA
1 CCTTCGGGACTTA
85344916 TGTGACAGCC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
39 12 0.14
40 72 0.86
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85346753 original size:40 final size:39
Alignment explanation
Indices: 85346588--85346771 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
85346578 AAATTGAATG
* * *
85346588 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85346628 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85346668 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85346708 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
85346747 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
85346772 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85346796 original size:80 final size:81
Alignment explanation
Indices: 85346628--85346816 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
85346618 GCTGGAAATT
* * * *
85346628 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
85346693 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
85346709 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
85346772 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
85346788 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
85346817 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:85349125 original size:40 final size:40
Alignment explanation
Indices: 85349070--85349279 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85349060 AACATTGGAA
85349070 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85349110 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
85349150 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
85349190 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
85349229 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
85349270 CTATATCCGG
1 ATATATCCGG
85349280 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:85356939 original size:40 final size:39
Alignment explanation
Indices: 85356774--85356957 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
85356764 AAATTGAATG
* * *
85356774 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
85356814 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
85356854 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
85356894 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
85356933 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
85356958 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:85356982 original size:80 final size:81
Alignment explanation
Indices: 85356814--85357002 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
85356804 GCTGGAAATT
* * * *
85356814 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
85356879 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
85356895 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
85356958 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
85356974 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
85357003 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:85358456 original size:40 final size:40
Alignment explanation
Indices: 85358401--85358525 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
85358391 GGGTGTTACA
*
85358401 ACTTAACCCAAATATAGTAACTCGCACAAATGCCTTCGGG
1 ACTTAACCCAGATATAGTAACTCGCACAAATGCCTTCGGG
* * *
85358441 ACTTAACCCAGATATAGTAACTCACACAAATGGCTTCGAG
1 ACTTAACCCAGATATAGTAACTCGCACAAATGCCTTCGGG
* * * * *
85358481 ACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGG
1 ACTTAACCCAGATA-TAGTAACTCGCACAAATGCCTTCGGG
85358521 ACTTA
1 ACTTA
85358526 GCCCGGTTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (40 bp):
ACTTAACCCAGATATAGTAACTCGCACAAATGCCTTCGGG
Found at i:85366456 original size:40 final size:40
Alignment explanation
Indices: 85366321--85366569 Score: 312
Period size: 39 Copynumber: 6.3 Consensus size: 40
85366311 AAGCCAAGTA
* * *
85366321 CCTTCGGGAGTTAA-CCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATG
* * *
85366360 CCTTC-GGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* * *
85366399 -CTTCGGGACTTAGCCCGGATATAATAACTCGTACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
85366438 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
*
85366478 CCTTCGGGACTTAACCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* * * *
85366518 -CTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAACCCGGATA-TAGTAACTCGCACAAATG
85366557 CCTTCGGGACTTA
1 CCTTCGGGACTTA
85366570 GCCCAGTTAT
Statistics
Matches: 186, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
38 11 0.06
39 88 0.47
40 87 0.47
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:85366478 original size:79 final size:80
Alignment explanation
Indices: 85366356--85366573 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 80
85366346 TACTCGCTCG
* *
85366356 AATGCCTTC-GGACATAGCCCGGATATAGTAACTCGCACCAATG-CTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
85366419 ATAATAACTCGTACA
66 ATAATAACTCGTACA
* *
85366434 AATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
85366499 ATAGTAACTCGTACA
66 ATAATAACTCGTACA
* * *
85366514 AATG-CTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
85366574 AGTTATCATC
Statistics
Matches: 127, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
78 10 0.08
79 80 0.63
80 37 0.29
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAATAACTCGTACA
Found at i:85366570 original size:40 final size:40
Alignment explanation
Indices: 85366321--85366573 Score: 320
Period size: 40 Copynumber: 6.4 Consensus size: 40
85366311 AAGCCAAGTA
* * * *
85366321 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
85366360 CCTTC-GGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
85366399 -CTTCGGGACTTAGCCCGGATATAATAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85366438 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
85366478 CCTTCGGGACTTAACCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
85366518 -CTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
85366557 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
85366574 AGTTATCATC
Statistics
Matches: 190, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
38 11 0.06
39 88 0.46
40 91 0.48
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85378191 original size:46 final size:46
Alignment explanation
Indices: 85378141--85378316 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85378131 TGGTTGAGCA
85378141 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85378187 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
85378232 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
85378280 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85378317 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85378297 original size:93 final size:93
Alignment explanation
Indices: 85378138--85378309 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85378128 GGATGGTTGA
* *
85378138 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85378203 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
85378231 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85378296 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
85378310 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85382627 original size:52 final size:52
Alignment explanation
Indices: 85382549--85382652 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
85382539 TTTCTATTTG
*
85382549 ACTGTCTATCGATGTGTTCATTATTTCTGTGAGGTCGTAAGCATACATGCAC
1 ACTGTCTACCGATGTGTTCATTATTTCTGTGAGGTCGTAAGCATACATGCAC
* *
85382601 ACTGTCTACCGATGTGTTCATTATTTCTGTGAGGTTGTGAGCATACATGCAC
1 ACTGTCTACCGATGTGTTCATTATTTCTGTGAGGTCGTAAGCATACATGCAC
85382653 TTGCATAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (52 bp):
ACTGTCTACCGATGTGTTCATTATTTCTGTGAGGTCGTAAGCATACATGCAC
Found at i:85386240 original size:42 final size:42
Alignment explanation
Indices: 85386178--85386347 Score: 272
Period size: 42 Copynumber: 4.1 Consensus size: 42
85386168 CTAAGTCCGG
* *
85386178 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* * *
85386220 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCTGTATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
85386262 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
85386302 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
85386344 ATAT
1 ATAT
85386348 TATATCGAGA
Statistics
Matches: 117, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
40 39 0.33
42 78 0.67
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:85386293 original size:84 final size:82
Alignment explanation
Indices: 85386178--85386347 Score: 286
Period size: 82 Copynumber: 2.0 Consensus size: 82
85386168 CTAAGTCCGG
*
85386178 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
1 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGG--ATATATATTACCAGCACGAAGCCTG
* *
85386243 TGGGATTTAACCTGTATAT
64 TGGGATTTAACCCGGATAT
*
85386262 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATTACCAGCACGAAGCCTGTG
1 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATTACCAGCACGAAGCCTGTG
85386327 GGATTTAACCCGGATAT
66 GGATTTAACCCGGATAT
85386344 ATAT
1 ATAT
85386348 TATATCGAGA
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
82 46 0.56
84 36 0.44
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (82 bp):
ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATTACCAGCACGAAGCCTGTG
GGATTTAACCCGGATAT
Found at i:85392832 original size:40 final size:41
Alignment explanation
Indices: 85392788--85392963 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 41
85392778 CTAAGTCCGG
* * *
85392788 ATATAGTACCAGCACTAAGCCCGCGGGATTTAACCCGGATATATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG----A-AT
*
85392834 ATATATTACCGGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA-AT
85392876 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG-AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAAT
*
85392916 ATATATTACCAGCACGAAGCCTACGGGATTTAACCCGG-AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAAT
85392956 ATATATTA
1 ATATATTA
85392964 TATCGAGAGC
Statistics
Matches: 124, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
40 49 0.40
42 41 0.33
46 34 0.27
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (41 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAAT
Found at i:85392891 original size:42 final size:42
Alignment explanation
Indices: 85392788--85392961 Score: 253
Period size: 42 Copynumber: 4.1 Consensus size: 42
85392778 CTAAGTCCGG
* * *
85392788 ATATAGTACCAGCACTAAGCCCGCGGGATTTAACCCGGATATATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG----ATAT
*
85392834 ATATATTACCGGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
85392876 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
85392916 ATATATTACCAGCACGAAGCCTACGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
85392958 ATAT
1 ATAT
85392962 TATATCGAGA
Statistics
Matches: 120, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
40 39 0.32
42 47 0.39
46 34 0.28
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:85392958 original size:82 final size:83
Alignment explanation
Indices: 85392788--85392961 Score: 251
Period size: 82 Copynumber: 2.0 Consensus size: 83
85392778 CTAAGTCCGG
* *
85392788 ATATAGTACCAGCACTAAGCCCGCGGGATTTAACCCGGATATATATATATATTACCGGCACGAAG
1 ATATAGTACCAGCACGAAGCCCGCGGGATTTAACCCGG----A-ATATATATTACCAGCACGAAG
*
85392853 CCTGCGGGATTTAACCCGGATAT
61 CCTACGGGATTTAACCCGGATAT
* *
85392876 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG-ATATATATTACCAGCACGAAGCCTAC
1 ATATAGTACCAGCACGAAGCCCGCGGGATTTAACCCGGAATATATATTACCAGCACGAAGCCTAC
85392940 GGGATTTAACCCGGATAT
66 GGGATTTAACCCGGATAT
85392958 ATAT
1 ATAT
85392962 TATATCGAGA
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
82 46 0.57
88 35 0.43
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (83 bp):
ATATAGTACCAGCACGAAGCCCGCGGGATTTAACCCGGAATATATATTACCAGCACGAAGCCTAC
GGGATTTAACCCGGATAT
Found at i:85394659 original size:46 final size:45
Alignment explanation
Indices: 85394609--85394784 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
85394599 TGGTTGAGCA
85394609 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
85394655 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGACGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
85394702 TCCGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
85394748 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85394785 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 65 0.61
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:85394765 original size:93 final size:93
Alignment explanation
Indices: 85394606--85394776 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
85394596 GGATGGTTGA
* *
85394606 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
85394671 TGAGTCCGAGTTCGAGAGACGTAACTAG
66 TGAGTCCGAGTTCGAGAGACGTAACTAG
* *
85394699 GCATCCGAGCTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
85394763 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
85394777 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTACGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGACGTAACTAG
Found at i:85398765 original size:71 final size:71
Alignment explanation
Indices: 85398679--85398842 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
85398669 CGATTTGTCT
85398679 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85398744 CTTTCA
66 CTTTCA
85398750 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
85398815 CTTTCA
66 CTTTCA
*
85398821 CGTAGCTCTCTTGTCTATATGG
1 CGTAGCTCTCTTGTCTACATGG
85398843 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:85398880 original size:71 final size:70
Alignment explanation
Indices: 85398679--85398876 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
85398669 CGATTTGTCT
* * * *
85398679 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85398744 CTTTCA
65 CTTTCA
* * * *
85398750 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
85398815 CTTTCA
65 CTTTCA
* * *
85398821 CGTAGCTCTCTTGTCTATATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
85398877 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:85401132 original size:15 final size:15
Alignment explanation
Indices: 85401112--85401175 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
85401102 GTATCTTGGG
85401112 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
85401127 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
85401142 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
85401157 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
85401170 TTTCTT
1 TTTCTT
85401176 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 4 0.09
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:85404026 original size:54 final size:56
Alignment explanation
Indices: 85403943--85404052 Score: 206
Period size: 54 Copynumber: 2.0 Consensus size: 56
85403933 TGATTATGCA
85403943 AATGATGTTTTATGTTTGCTTATATAGTTGTGTTACTTGCTA-TTGCATGTGAGCT
1 AATGATGTTTTATGTTTGCTTATATAGTTGTGTTACTTGCTATTTGCATGTGAGCT
85403998 AATGATG-TTTATGTTTGCTTATATAGTTGTGTTACTTGCTATTTGCATGTGAGCT
1 AATGATGTTTTATGTTTGCTTATATAGTTGTGTTACTTGCTATTTGCATGTGAGCT
85404053 TACTAAGCAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
54 34 0.63
55 20 0.37
ACGTcount: A:0.20, C:0.09, G:0.22, T:0.49
Consensus pattern (56 bp):
AATGATGTTTTATGTTTGCTTATATAGTTGTGTTACTTGCTATTTGCATGTGAGCT
Found at i:85426712 original size:28 final size:27
Alignment explanation
Indices: 85426667--85426731 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 27
85426657 CATCACAGAA
* * *
85426667 ACAGTATCAGGAGGGCCTTAGCCCATT
1 ACAGAATCAGGAGGGCCTAAGCCCAAT
* *
85426694 AGCAGAATCAGGTGGGCCTAAGCGCAAT
1 A-CAGAATCAGGAGGGCCTAAGCCCAAT
85426722 ACAGAATCAG
1 ACAGAATCAG
85426732 TATCAGATGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 10 0.31
28 22 0.69
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.17
Consensus pattern (27 bp):
ACAGAATCAGGAGGGCCTAAGCCCAAT
Found at i:85431540 original size:27 final size:27
Alignment explanation
Indices: 85431484--85431544 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
85431474 TACCATACAT
* ** *
85431484 GGGTATTACGGTCATTTTACTCTATTG
1 GGGTATTACGATCATTTTACTAAATGG
85431511 GGGTATTACGATCATTTTAC-AAATCGG
1 GGGTATTACGATCATTTTACTAAAT-GG
85431538 GGGTATT
1 GGGTATT
85431545 TTGGTACTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.39
Consensus pattern (27 bp):
GGGTATTACGATCATTTTACTAAATGG
Found at i:85433166 original size:37 final size:37
Alignment explanation
Indices: 85433103--85433248 Score: 213
Period size: 37 Copynumber: 3.9 Consensus size: 37
85433093 AGCTCAGATG
* *
85433103 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
85433140 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
85433176 TATATTTCCACACGTAGTCATCGGGTCTTATCCGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
85433214 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
85433249 ATATATTTCC
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
36 1 0.01
37 94 0.98
38 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:85433229 original size:74 final size:74
Alignment explanation
Indices: 85433108--85433259 Score: 259
Period size: 74 Copynumber: 2.1 Consensus size: 74
85433098 AGATGAAATC
*
85433108 TCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTACCCG
85433173 GAATATATT
66 GAATATATT
* * * *
85433182 TCCACACGTAGTCATCGGGTCTTATCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTACCCG
85433247 GAATATATT
66 GAATATATT
85433256 TCCA
1 TCCA
85433260 AGTTTCATGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (74 bp):
TCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTACCCG
GAATATATT
Found at i:85433449 original size:48 final size:48
Alignment explanation
Indices: 85433395--85433778 Score: 651
Period size: 48 Copynumber: 8.0 Consensus size: 48
85433385 CCACACCTCC
* * * *
85433395 TACATATTTCACACTAGCCCTTCCGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
85433443 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
85433493 TATATATTTCACATTAGCCATTCGACTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
85433541 TGCATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85433589 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85433637 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
85433685 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
85433733 TACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
85433779 TTATGTTGTG
Statistics
Matches: 321, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 277 0.86
50 44 0.14
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:85443340 original size:68 final size:68
Alignment explanation
Indices: 85443268--85443443 Score: 175
Period size: 68 Copynumber: 2.6 Consensus size: 68
85443258 CATCATGTGT
** * * *
85443268 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAAATA-TAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
85443330 ATGTAG
63 ATGTAG
* * *
85443336 ACAAGAGAGCTACGGGAGAGATAAATATAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAATATAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
85443401 ATGTAG
63 ATGTAG
*
85443407 ACAAGAGAGCTACGAG--ATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGAGATATAAATATAGCTAGGTCACATG
85443444 GGTGGTACTA
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
67 6 0.07
68 32 0.35
69 8 0.09
70 6 0.07
71 27 0.29
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGATATAAATATAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:85452591 original size:64 final size:64
Alignment explanation
Indices: 85452510--85452693 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
85452500 AGACATTATG
* *
85452510 ATGTAGCTAGGTCGCATGGGTGATACTCTGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTCTGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
85452574 ATGTAGCTAGGTCGCATGCGTGGT-TTCAGGTGAAGAACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGATACTC---TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
85452638 TAA
62 TAA
* * ** *
85452641 AT-TGGCTAGGTCACATGGGTGGA-ACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGT-GATACTCTGTGTACACCATGTAG-ACAAGAGAGC
85452694 CGAACTATAT
Statistics
Matches: 96, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
62 1 0.01
63 21 0.22
64 23 0.24
66 17 0.18
67 34 0.35
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTCTGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:85453787 original size:2 final size:2
Alignment explanation
Indices: 85453780--85453812 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
85453770 TCATGACATG
85453780 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85453813 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85454690 original size:30 final size:30
Alignment explanation
Indices: 85454656--85454717 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
85454646 CTCTTTATTT
85454656 ATTTTACTTAGTTAAAAATCATAGTTTTTA
1 ATTTTACTTAGTTAAAAATCATAGTTTTTA
*
85454686 ATTTTACTTAGTTAAAAATCTTAGTTTTTA
1 ATTTTACTTAGTTAAAAATCATAGTTTTTA
85454716 AT
1 AT
85454718 CACCTCCTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (30 bp):
ATTTTACTTAGTTAAAAATCATAGTTTTTA
Found at i:85462591 original size:29 final size:29
Alignment explanation
Indices: 85462554--85462631 Score: 129
Period size: 29 Copynumber: 2.7 Consensus size: 29
85462544 AATCTTATTT
*
85462554 ATATGGCCCATCAAGCCCAATTCATACTC
1 ATATGGCCCATCAGGCCCAATTCATACTC
*
85462583 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATCAGGCCCAATTCATACTC
*
85462612 ATATGGCCCATTAGGCCCAA
1 ATATGGCCCATCAGGCCCAA
85462632 ATCACCTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAATTCATACTC
Found at i:85462647 original size:29 final size:29
Alignment explanation
Indices: 85462525--85462635 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
85462515 TACATACATG
* *
85462525 CATATGGCCCA-CTTGGCCC-AATCTTATT
1 CATATGGCCCATC-AGGCCCAAATCATATT
* * * *
85462553 TATATGGCCCATCAAGCCCAATTCATACT
1 CATATGGCCCATCAGGCCCAAATCATATT
*
85462582 CATATGGCCCATCAGGCCCAATTCATATT
1 CATATGGCCCATCAGGCCCAAATCATATT
*
85462611 CATATGGCCCATTAGGCCCAAATCA
1 CATATGGCCCATCAGGCCCAAATCA
85462636 CCTTTATATG
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
28 14 0.20
29 56 0.80
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAAATCATATT
Found at i:85462647 original size:58 final size:57
Alignment explanation
Indices: 85462525--85462635 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
85462515 TACATACATG
* * * *
85462525 CATATGGCCCACTTGGCCCAATCTTATTTATATGGCCCATCAAGCCCAATTCATACT
1 CATATGGCCCACTAGGCCCAATCATATTCATATGGCCCATCAAGCCCAAATCATACT
* *
85462582 CATATGGCCCA-TCAGGCCCAATTCATATTCATATGGCCCATTAGGCCCAAATCA
1 CATATGGCCCACT-AGGCCCAA-TCATATTCATATGGCCCATCAAGCCCAAATCA
85462636 CCTTTATATG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 1 0.02
57 18 0.39
58 27 0.59
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.27
Consensus pattern (57 bp):
CATATGGCCCACTAGGCCCAATCATATTCATATGGCCCATCAAGCCCAAATCATACT
Found at i:85463440 original size:15 final size:17
Alignment explanation
Indices: 85463410--85463442 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
85463400 GAAAACATCT
85463410 CAAAAGCATAAAGAAAA
1 CAAAAGCATAAAGAAAA
85463427 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
85463442 C
1 C
85463443 CCAAAACTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.70, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:85477305 original size:40 final size:40
Alignment explanation
Indices: 85477250--85477433 Score: 316
Period size: 40 Copynumber: 4.6 Consensus size: 40
85477240 CGGATGATAA
* *
85477250 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
85477290 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
85477330 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85477370 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85477410 CCGGGCTAAGTCCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
85477434 AAGCAAGTAG
Statistics
Matches: 139, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
40 138 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85477449 original size:80 final size:79
Alignment explanation
Indices: 85477246--85477464 Score: 307
Period size: 80 Copynumber: 2.7 Consensus size: 79
85477236 TATTCGGATG
* *
85477246 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
85477310 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
85477326 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
85477391 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* ** *
85477406 ATAACCGGGCTAAGTCCTGAAGGCATTTAAGCAAGTAGTTATATTC-GGCTAAGTCCCGA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGA
85477465 TGATGCTTGG
Statistics
Matches: 127, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
79 15 0.12
80 110 0.87
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:85477733 original size:22 final size:21
Alignment explanation
Indices: 85477692--85477735 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
85477682 AGAATGGCAT
85477692 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
85477714 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
85477736 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:85485381 original size:40 final size:40
Alignment explanation
Indices: 85485326--85485582 Score: 376
Period size: 40 Copynumber: 6.5 Consensus size: 40
85485316 CGGATGATAA
* * *
85485326 CCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
85485366 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85485406 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85485446 CCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85485486 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85485526 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
85485566 TC-GGCTAAGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
85485583 ATGCTTGGGT
Statistics
Matches: 200, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 17 0.09
40 182 0.91
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85485850 original size:22 final size:21
Alignment explanation
Indices: 85485809--85485852 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
85485799 GAATGTGCAT
85485809 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
85485831 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
85485853 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:85490200 original size:43 final size:43
Alignment explanation
Indices: 85490152--85490266 Score: 187
Period size: 43 Copynumber: 2.7 Consensus size: 43
85490142 AATTCGGGCT
85490152 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
* * *
85490195 TCGAGCCTAGCAGGCTATAATGCAGGTGAAATAATATCGGGCT
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
*
85490238 TCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCGAGCCTAGCAGGCTATAATGCCGGTGAA
85490267 TGAATTCAGA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 11 0.16
43 56 0.84
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.20
Consensus pattern (43 bp):
TCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGAGCC
Found at i:85490859 original size:16 final size:18
Alignment explanation
Indices: 85490828--85490860 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
85490818 AACTCGTCAC
85490828 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
85490846 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
85490861 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:85493520 original size:27 final size:27
Alignment explanation
Indices: 85493501--85493630 Score: 181
Period size: 27 Copynumber: 4.8 Consensus size: 27
85493491 ATTACCAAAG
85493501 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
85493528 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
85493555 TACCCTCGATTTATAGAATT-CCTATTT
1 TACCCTCGATTTATAGAATTACC-GTTT
* * **
85493582 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
85493609 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
85493631 TAAAATACCC
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
26 2 0.02
27 90 0.98
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:85493609 original size:54 final size:54
Alignment explanation
Indices: 85493501--85493658 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 54
85493491 ATTACCAAAG
* * * *
85493501 TACCCTCGATTTATAGAATTACC-GTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATT-CCTATTTTACCCTTGATTTACAGAATTATCGTTT
*
85493555 TACCCTCGATTTATAGAATTCCTATTTTACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTCCTATTTTACCCTTGATTTACAGAATTATCGTTT
* * * *** * *
85493609 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTATC
1 TACCCTCGATTTATAGAATTCCTATTTTACCCTTGATTTACAGAATTATC
85493659 AAAATACCCT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 2 0.02
54 87 0.98
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTCCTATTTTACCCTTGATTTACAGAATTATCGTTT
Found at i:85493667 original size:54 final size:53
Alignment explanation
Indices: 85493609--85493860 Score: 147
Period size: 54 Copynumber: 4.7 Consensus size: 53
85493599 ATTATTGTTT
*
85493609 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTATCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGCTTT-CAAAATTATCAAAA
* * * * * *
85493663 TACCCTCGA-TCAGTAAAATTACCAAAATACCCTAGCCTGT-AAAATT-GCTAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCTTG-CTTTCAAAATTATC-AAAA
* ** * * *** * *
85493716 TACCC-CTGGTTTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAATACCCTTGCTTT-CAAAATTATCAAAA
* **
85493770 TACCC-CTGATTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCTTG-CTTTC--AAAATTATCAAAA
* * * *
85493826 TACCATTGGTTTACAAAATTACTGAAATACCCTTG
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTG
85493861 GTTTGTAGAT
Statistics
Matches: 148, Mismatches: 36, Indels: 26
0.70 0.17 0.12
Matches are distributed among these distances:
52 4 0.03
53 35 0.24
54 65 0.44
55 6 0.04
56 38 0.26
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGCTTTCAAAATTATCAAAA
Found at i:85493726 original size:80 final size:80
Alignment explanation
Indices: 85493623--85493774 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 80
85493613 CTCGATTTAC
* *
85493623 AAAATTACTAAAATACCCTTGGTTTACAAAATTATCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTATCAAAATACCCTCAATCAGTAAAATTACCAA
85493688 AATACCCTAGCCTGT
66 AATACCCTAGCCTGT
* ** ** **
85493703 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTATCAAAATACCCTCAATCAGTAAAATTACCAA
85493768 AATACCC
66 AATACCC
85493775 CTGATTTACA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTATCAAAATACCCTCAATCAGTAAAATTACCAA
AATACCCTAGCCTGT
Found at i:85493861 original size:27 final size:27
Alignment explanation
Indices: 85493609--85493864 Score: 130
Period size: 27 Copynumber: 9.4 Consensus size: 27
85493599 ATTATTGTTT
* *
85493609 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
85493636 TACCCTTGGTTTACAAAATTA-TCAAAA
1 TACCCTTGGTTTACAAAATTACT-AAAA
* * * * *
85493663 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACTAAAA
* * * *
85493690 TACCCTAGCCTGT--AAAATTGCTAAAA
1 TACCCTTG-GTTTACAAAATTACTAAAA
* ** * *
85493716 TACCCCTGGTTTGTAAAATTATTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** ** *
85493743 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
85493770 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
* *
85493797 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTTG-GTTTAC--AAAATTACT-AAAA
* *
85493826 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
85493853 TACCCTTGGTTT
1 TACCCTTGGTTT
85493865 GTAGATTTAC
Statistics
Matches: 172, Mismatches: 42, Indels: 30
0.70 0.17 0.12
Matches are distributed among these distances:
25 2 0.01
26 23 0.13
27 123 0.72
28 7 0.04
29 17 0.10
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:85493974 original size:27 final size:27
Alignment explanation
Indices: 85493926--85494008 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
85493916 TAGGTAAAAA
85493926 GACCGTAAAG-CCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
85493952 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
85493979 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
85494006 GAC
1 GAC
85494009 GAATATGCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.79
28 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:85494350 original size:21 final size:21
Alignment explanation
Indices: 85494321--85494362 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
85494311 GTGCATGATG
*
85494321 GAAAGTTGGGCCTCAATGGGCT
1 GAAAGTTGGACC-CAATGGGCT
85494343 GAAA-TTGGACCCAATGGGCT
1 GAAAGTTGGACCCAATGGGCT
85494363 TTCGGACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 6 0.32
22 4 0.21
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.21
Consensus pattern (21 bp):
GAAAGTTGGACCCAATGGGCT
Found at i:85494652 original size:25 final size:25
Alignment explanation
Indices: 85494624--85494671 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85494614 TTATAGTATG
* * *
85494624 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85494649 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85494672 GTTTAGTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85494732 original size:20 final size:21
Alignment explanation
Indices: 85494697--85494753 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
85494687 TGATATGTGG
85494697 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
85494715 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
85494736 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
85494754 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:85494881 original size:52 final size:51
Alignment explanation
Indices: 85494803--85494924 Score: 201
Period size: 52 Copynumber: 2.4 Consensus size: 51
85494793 GAGGAAGTGT
85494803 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
* **
85494855 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
85494906 AAAAGGGCTT-TGCCCCAGT
1 AAAAGGGCTTATGCCCCAGT
85494925 AATTAAAAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
50 8 0.12
51 23 0.35
52 35 0.53
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:85494900 original size:25 final size:26
Alignment explanation
Indices: 85494803--85494924 Score: 167
Period size: 26 Copynumber: 4.8 Consensus size: 26
85494793 GAGGAAGTGT
**
85494803 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
85494829 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
85494855 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
85494881 AAAAGGGCTT-TGCCTTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
85494906 AAAAGGGCTT-TGCCCCAGT
1 AAAAGGGCTTATGCCCCAGT
85494925 AATTAAAAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 29 0.34
26 57 0.66
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:85495130 original size:42 final size:42
Alignment explanation
Indices: 85495071--85495162 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
85495061 TAGTCTCCCC
* ** *
85495071 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
85495113 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
85495155 AAATGGGC
1 AAATGGGC
85495163 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:85496097 original size:19 final size:19
Alignment explanation
Indices: 85496073--85496120 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
85496063 TGGGCCCGTT
85496073 GGCCCATTAACCCGATTTC
1 GGCCCATTAACCCGATTTC
85496092 GGCCCATTAACCCGATTTC
1 GGCCCATTAACCCGATTTC
85496111 GGCCCATTAA
1 GGCCCATTAA
85496121 GCCCAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.23, C:0.35, G:0.17, T:0.25
Consensus pattern (19 bp):
GGCCCATTAACCCGATTTC
Found at i:85498027 original size:29 final size:29
Alignment explanation
Indices: 85497994--85498067 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
85497984 GTGACGAGAT
85497994 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
85498023 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
85498052 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
85498068 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:85498083 original size:29 final size:28
Alignment explanation
Indices: 85498051--85498125 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
85498041 CTGGAAATAT
* *
85498051 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
85498080 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
85498108 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
85498126 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:85498094 original size:58 final size:57
Alignment explanation
Indices: 85497994--85498125 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
85497984 GTGACGAGAT
* * * * * *
85497994 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
85498052 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
85498109 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
85498126 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:85504715 original size:1 final size:1
Alignment explanation
Indices: 85504709--85504733 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
85504699 TTAAGAAATG
85504709 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
85504734 TGAGCATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:85505971 original size:29 final size:29
Alignment explanation
Indices: 85505938--85506011 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
85505928 GTGACGAGAT
85505938 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
85505967 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
85505996 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
85506012 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:85506027 original size:29 final size:29
Alignment explanation
Indices: 85505995--85506070 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
85505985 CTGGAAATAT
* *
85505995 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
85506024 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
85506053 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
85506071 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:85508387 original size:3 final size:3
Alignment explanation
Indices: 85508379--85508414 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
85508369 AAACATACTA
85508379 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85508415 TTCATAAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:85515682 original size:13 final size:13
Alignment explanation
Indices: 85515664--85515689 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85515654 TCTCTACGTC
85515664 AATTCAAACAATT
1 AATTCAAACAATT
85515677 AATTCAAACAATT
1 AATTCAAACAATT
85515690 TCTACCTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
AATTCAAACAATT
Found at i:85527794 original size:24 final size:25
Alignment explanation
Indices: 85527767--85527874 Score: 132
Period size: 26 Copynumber: 4.4 Consensus size: 25
85527757 ATGGAGGCCT
85527767 AGCCTCTTTT-AAT-AACTAGGGCAA
1 AGCC-CTTTTCAATAAACTAGGGCAA
* *
85527791 AGCCCTTTT-GATAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTAGGGCAA
* *
85527815 AGCTCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCA-A
*
85527841 AGCCCTTTTCAATAAACTAGGGCAT
1 AGCCCTTTTCAATAAACTAGGGCAA
85527866 AGCCCTTTT
1 AGCCCTTTT
85527875 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 7 0.09
24 22 0.30
25 22 0.30
26 23 0.31
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTAGGGCAA
Found at i:85527949 original size:20 final size:20
Alignment explanation
Indices: 85527924--85527970 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
85527914 TTATGATTAC
*
85527924 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
85527943 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
85527964 ATCATGT
1 ATCATGT
85527971 ATATCATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:85529205 original size:21 final size:23
Alignment explanation
Indices: 85529164--85529206 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
85529154 GCTGGAAAAG
85529164 AAAAGAGAGAAAAAGACCACACC
1 AAAAGAGAGAAAAAGACCACACC
*
85529187 AAAAG-GAGAAAACGA-CACAC
1 AAAAGAGAGAAAAAGACCACAC
85529207 TTAATTCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.60, C:0.21, G:0.19, T:0.00
Consensus pattern (23 bp):
AAAAGAGAGAAAAAGACCACACC
Found at i:85531024 original size:74 final size:75
Alignment explanation
Indices: 85530914--85531053 Score: 187
Period size: 74 Copynumber: 1.9 Consensus size: 75
85530904 ACATAGTGCT
* *
85530914 ATTCAAATTTGCACACTTAGTGCCATGCTAACCCGCACACATAGTGCC-TT-AGAAATCCACACA
1 ATTCAAATTAGCACACATAGTGCCATGCTAACCCGCACACATAGTGCCATTCA-AAATCCACACA
85530977 CTCGTATTGAC
65 CTCGTATTGAC
* * * *
85530988 ATTCAAATTAGCACACATAGTGCTATTC-AATTCCGCACACATAGTGCCATTCAAAATCCGCACA
1 ATTCAAATTAGCACACATAGTGCCATGCTAA-CCCGCACACATAGTGCCATTCAAAATCCACACA
85531052 CT
65 CT
85531054 TAGTGCCAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
73 2 0.04
74 40 0.70
75 14 0.25
76 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (75 bp):
ATTCAAATTAGCACACATAGTGCCATGCTAACCCGCACACATAGTGCCATTCAAAATCCACACAC
TCGTATTGAC
Found at i:85531025 original size:24 final size:25
Alignment explanation
Indices: 85530901--85531061 Score: 109
Period size: 24 Copynumber: 6.6 Consensus size: 25
85530891 ATCGATTTCA
* **
85530901 CACACATAGTGCTATTC-AAATTTG
1 CACACATAGTGCCATTCAAAATCCG
* * * *
85530925 CACACTTAGTGCCATGC-TAACCCG
1 CACACATAGTGCCATTCAAAATCCG
*
85530949 CACACATAGTGCC-TT-AGAAATCCA
1 CACACATAGTGCCATTCA-AAATCCG
* * * **
85530973 CACACTCGTATTGACATTC-AAATTAG
1 CACA--CATAGTGCCATTCAAAATCCG
* *
85530999 CACACATAGTGCTATTC-AATTCCG
1 CACACATAGTGCCATTCAAAATCCG
85531023 CACACATAGTGCCATTCAAAATCCG
1 CACACATAGTGCCATTCAAAATCCG
*
85531048 CACACTTAGTGCCA
1 CACACATAGTGCCA
85531062 ATGTCATTTC
Statistics
Matches: 102, Mismatches: 28, Indels: 13
0.71 0.20 0.09
Matches are distributed among these distances:
23 1 0.01
24 66 0.65
25 19 0.19
26 14 0.14
27 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (25 bp):
CACACATAGTGCCATTCAAAATCCG
Found at i:85541174 original size:24 final size:24
Alignment explanation
Indices: 85541147--85541305 Score: 106
Period size: 24 Copynumber: 6.5 Consensus size: 24
85541137 ATCAATTTCA
*
85541147 CACACATAATGCTATTCAAATCCG
1 CACACATAGTGCTATTCAAATCCG
* * * * *
85541171 CACACTTAGTGCCATGCTAACCCG
1 CACACATAGTGCTATTCAAATCCG
** *
85541195 CACACATAGTGCCT-TAGAAATCCA
1 CACACATAGTG-CTATTCAAATCCG
* * *
85541219 CACACTCGTATTGAC-ATTCAAATCAG
1 CACA--CATAGTG-CTATTCAAATCCG
*
85541245 CACACATAGTGCTATTCAATTCCG
1 CACACATAGTGCTATTCAAATCCG
* * *
85541269 CATACATAGTACCATTCAAAATCCG
1 CACACATAGTGCTATTC-AAATCCG
*
85541294 CACACTTAGTGC
1 CACACATAGTGC
85541306 CAATGTCATT
Statistics
Matches: 98, Mismatches: 31, Indels: 11
0.70 0.22 0.08
Matches are distributed among these distances:
23 1 0.01
24 65 0.66
25 16 0.16
26 16 0.16
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (24 bp):
CACACATAGTGCTATTCAAATCCG
Found at i:85545530 original size:43 final size:42
Alignment explanation
Indices: 85545464--85545578 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
85545454 AGCATATACA
* * *
85545464 ATGCCGAC-GTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAACAT-G
* *
85545507 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAAATATG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAACATG
* *
85545549 ATGCCAATGTCCTAGACATGGTCTTACACG
1 ATGCCACTGTCCCAGACATGGTCTTACACG
85545579 CAAAACAGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAACATG
Found at i:85545566 original size:42 final size:43
Alignment explanation
Indices: 85545472--85545578 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 43
85545462 CAATGCCGAC
** * * *
85545472 GTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACT
1 GTCCCAGACAAGGTCTTACACGAAATCAAACATCGATGCCAAT
*
85545515 GTCCCAGACAAGGTCTTACACGAAATCAAATAT-GATGCCAAT
1 GTCCCAGACAAGGTCTTACACGAAATCAAACATCGATGCCAAT
* *
85545557 GTCCTAGACATGGTCTTACACG
1 GTCCCAGACAAGGTCTTACACG
85545579 CAAAACAGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 28 0.50
43 28 0.50
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
GTCCCAGACAAGGTCTTACACGAAATCAAACATCGATGCCAAT
Found at i:85550235 original size:39 final size:39
Alignment explanation
Indices: 85550181--85550455 Score: 435
Period size: 39 Copynumber: 7.1 Consensus size: 39
85550171 AATTTTATTA
*
85550181 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
85550220 CCAGCACAAAGCCTGCGGGTCTTTAGCCCAGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
85550259 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
85550298 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85550337 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * * *
85550376 CCAGCACGAAGCCTGCGGGTCTTTGGCCTGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
85550415 CCAACACAAAG-CTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85550453 CCA
1 CCA
85550456 TACACATTTC
Statistics
Matches: 217, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
38 28 0.13
39 189 0.87
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:85550387 original size:117 final size:117
Alignment explanation
Indices: 85550176--85550455 Score: 499
Period size: 117 Copynumber: 2.4 Consensus size: 117
85550166 CCCGAAATTT
*
85550176 TATTACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
85550241 TTTAGCCCAGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
66 TTTAGCCCAGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
85550293 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
* *
85550358 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCTGGATA
66 TTTAGCCCAGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
* * *
85550410 TATTTCCAACACAAAG-CTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
85550456 TACACATTTC
Statistics
Matches: 157, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
116 28 0.18
117 129 0.82
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (117 bp):
TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
TTTAGCCCAGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
Found at i:85556243 original size:39 final size:39
Alignment explanation
Indices: 85556189--85556463 Score: 444
Period size: 39 Copynumber: 7.1 Consensus size: 39
85556179 AATTTTATTA
*
85556189 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85556228 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
85556267 -CAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
85556305 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85556344 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * * *
85556383 CCAGCACGAAGCCTGCGGGTCTTTGGCCCAGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
85556422 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85556461 CCA
1 CCA
85556464 TACACATTTC
Statistics
Matches: 217, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
38 35 0.16
39 182 0.84
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:85565211 original size:46 final size:45
Alignment explanation
Indices: 85565161--85565336 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
85565151 TGGTTGAGCA
85565161 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
85565207 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
85565254 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
85565300 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85565337 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 64 0.59
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:85565317 original size:93 final size:93
Alignment explanation
Indices: 85565158--85565328 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
85565148 GGATGGTTGA
* *
85565158 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
85565223 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
85565251 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
85565315 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
85565329 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:85567775 original size:28 final size:28
Alignment explanation
Indices: 85567739--85567831 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 28
85567729 AAAGCATGAC
* *
85567739 TATGGATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGACTAATGGGCCA
* **
85567767 TATGAATGTGATTTGGTTTAATGGGCCA
1 TATGAATGTGATTGGGACTAATGGGCCA
* * * *
85567795 TATGATTGAGATTGAGACTAGTGGGCCA
1 TATGAATGTGATTGGGACTAATGGGCCA
* *
85567823 CATGCATGT
1 TATGAATGT
85567832 ATATAGGCTT
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (28 bp):
TATGAATGTGATTGGGACTAATGGGCCA
Found at i:85571533 original size:13 final size:13
Alignment explanation
Indices: 85571515--85571539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85571505 TATGTGATAT
85571515 GTGTGAAAATTTC
1 GTGTGAAAATTTC
85571528 GTGTGAAAATTT
1 GTGTGAAAATTT
85571540 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:85572715 original size:44 final size:43
Alignment explanation
Indices: 85572667--85572815 Score: 130
Period size: 42 Copynumber: 3.5 Consensus size: 43
85572657 TGTGATTTCG
85572667 TGTAAGACCATGTCTGGGACGTTGGCATCGGTTTGAGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGGTTT-AGATTTACA
* * ** *
85572711 TGTAAGACCAAGTCTGGGACATTGGCATC-GCATATGATTT-CC
1 TGTAAGACCATGTCTGGGACGTTGGCATCGGTTTA-GATTTACA
* * *
85572753 TGTAAGACCCTGTCTGGGATAG-TGGCATCGATATTTA-A-TTACA
1 TGTAAGACCATGTCTGGGA-CGTTGGCATCG--GTTTAGATTTACA
85572796 TGTAAGACC-TCGTCTGGGAC
1 TGTAAGACCAT-GTCTGGGAC
85572816 ATTTGCATTG
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
42 29 0.35
43 26 0.31
44 27 0.32
45 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGGTTTAGATTTACA
Found at i:85576279 original size:40 final size:39
Alignment explanation
Indices: 85576235--85576360 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
85576225 GGGACTCAAC
*
85576235 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
85576275 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
85576315 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
85576355 CCGGAT
1 CCGGAT
85576361 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:85576319 original size:80 final size:80
Alignment explanation
Indices: 85576174--85576360 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
85576164 GCTACACATT
* * *
85576174 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
85576238 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
85576254 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
85576317 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
85576335 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
85576361 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:85580528 original size:28 final size:28
Alignment explanation
Indices: 85580488--85580559 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
85580478 AAAATTGTAC
* *
85580488 AGCACTAAGTGTGCGAGCTTG-ATTCTAT
1 AGCACTAAGTGTGCGAGC-TGAAATATAT
85580516 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AAATATAT
85580545 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85580560 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:85587438 original size:40 final size:39
Alignment explanation
Indices: 85587394--85587519 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
85587384 GGGACTCAAC
*
85587394 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
85587434 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
85587474 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
85587514 CCGGAT
1 CCGGAT
85587520 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:85587478 original size:80 final size:80
Alignment explanation
Indices: 85587333--85587519 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
85587323 GCTACACATT
* * *
85587333 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
85587397 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
85587413 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
85587476 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
85587494 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
85587520 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:85592739 original size:13 final size:13
Alignment explanation
Indices: 85592721--85592748 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
85592711 GCAGCCCACA
85592721 CCTGGACACACGC
1 CCTGGACACACGC
85592734 CCTGGACACACGC
1 CCTGGACACACGC
85592747 CC
1 CC
85592749 ATGTCCTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.50, G:0.21, T:0.07
Consensus pattern (13 bp):
CCTGGACACACGC
Found at i:85596284 original size:43 final size:43
Alignment explanation
Indices: 85596187--85596335 Score: 158
Period size: 43 Copynumber: 3.5 Consensus size: 43
85596177 TATTCCAGAT
** * *
85596187 ATGGTCTTACATGTTATCAC-ATATCGATGCCAATTTCCCAAAC
1 ATGGTCTTACACATAATCACAATAT-GATGCCAATGTCCCAAAC
* * * * *
85596230 ATAGTCCTACACGTAATCGCAATATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACAATATGATGCCAATGTCCCAAAC
* *
85596273 ATGGTCTTACACATAATCATAATATGATGCCAATGGT-CCAAAG
1 ATGGTCTTACACATAATCACAATATGATGCCAAT-GTCCCAAAC
*
85596316 ATGGCCTTACACATAATCAC
1 ATGGTCTTACACATAATCAC
85596336 GTCTCCTTAA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 82 0.93
44 6 0.07
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACAATATGATGCCAATGTCCCAAAC
Found at i:85602385 original size:44 final size:42
Alignment explanation
Indices: 85602324--85602480 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
85602314 TGTGTTATCG
*
85602324 TGTAAGACCACGTCTGGGACTTTGGCATCAACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACTTTGGCATCAA-TT-TGATTTACA
* *
85602368 TGTAAGACCACGTCTGGGAATTTGGCATCGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACTTTGGCATC-AATTTGATTTACA
** *
85602410 TGTAAGACC-CTGTCTGGGACAGTGGCATAGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACTTTGGCAT-CA-ATTTGATTTACA
* *
85602453 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACTTTGGCAT
85602481 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 37 0.39
44 31 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACTTTGGCATCAATTTGATTTACA
Found at i:85607116 original size:93 final size:93
Alignment explanation
Indices: 85607009--85607179 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
85606999 GCCCCTAAGT
* * * * **
85607009 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGACCTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTAAA
85607074 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
85607102 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTAAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTAAA
85607167 CGAGTTCGGATGC
66 CGAGTTCGGATGC
85607180 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTAAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:85607176 original size:46 final size:46
Alignment explanation
Indices: 85607004--85607176 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
85606994 AACCCGCCCC
* * * *
85607004 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
* * *
85607050 TAAGTGACCTCGGACTCAACTCGACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* *
85607098 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
*
85607143 TAAGTGAACTCGGACTCAACTAAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
85607177 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:85612594 original size:44 final size:42
Alignment explanation
Indices: 85612531--85612689 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 42
85612521 TATGTGTTAT
85612531 CGTGTAAGACCACGTCTGGGACGTTGGCATCAACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCAA-TT-TGATTTA
* * *
85612575 CGTGTAAGACCATGTCTGGGACTTTGGCATCGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATC-AATTTGATTTA
* * *
85612617 CGTGTAAGACC-CTGCCCGGGACAG-TGGCATAGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT-CA-ATTTGATTTA
* *
85612660 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
85612690 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
42 26 0.28
43 35 0.37
44 32 0.34
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCAATTTGATTTA
Found at i:85625910 original size:49 final size:49
Alignment explanation
Indices: 85625838--85625951 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 49
85625828 TACGGTTTAT
* *
85625838 CAATGCCATGTCCTAGACAGGTCTCACACTGACTTTCATATATCGAGGC
1 CAATGCCATGTCCCAGACAGGTCTCACACTGACTCTCATATATCGAGGC
* * * * * *
85625887 CAATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCG-GTGT
1 CAATGCCATGTCCCAGACAGGTCTCACACTGACTCTCATATATCGAG-GC
*
85625936 CGATGCCATGTCCCAG
1 CAATGCCATGTCCCAG
85625952 CAAGTCTTAC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 53 0.98
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (49 bp):
CAATGCCATGTCCCAGACAGGTCTCACACTGACTCTCATATATCGAGGC
Found at i:85626129 original size:93 final size:93
Alignment explanation
Indices: 85625985--85626198 Score: 285
Period size: 93 Copynumber: 2.3 Consensus size: 93
85625975 AAACTGACGT
* *
85625985 CATGTCCCAGACAGGTCTTACA-GTAGCTTATATATCTCGAGGTCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGTCTTACACGTAGCTTATATATCTCGAGGCCGATGCATGTCCCAGACATGT
* *
85626049 CTTACACTAGCTCTCGTCTCAATGT-TGATG
66 CTTACACTAGCTCTC--AT-AATGTACGATG
*
85626079 CATGTCCCAGACATGTCTTACACG-GGCTT-TATATCTCGAGGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGTCTTACACGTAGCTTATATATCTCGAGGCCGATGCATGTCCCAGACATGT
* *
85626142 CTTATACTGGCTCTCATAATGTAGCCGATG
66 CTTACACTAGCTCTCATAATGTA--CGATG
85626172 CATGTCCCAGACATGTCTTACAC-TAGC
1 CATGTCCCAGACATGTCTTACACGTAGC
85626199 ACACATATCA
Statistics
Matches: 107, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
90 5 0.05
91 1 0.01
93 75 0.70
94 25 0.23
95 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACGTAGCTTATATATCTCGAGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCTCTCATAATGTACGATG
Found at i:85626144 original size:47 final size:47
Alignment explanation
Indices: 85625985--85626194 Score: 207
Period size: 46 Copynumber: 4.5 Consensus size: 47
85625975 AAACTGACGT
* *
85625985 CATGTCCCAGACAGGTCTTACA-GTAGCTTATATATCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACG-AGCTT-TATATCTCGAGGCCGATG
* * ** * * **
85626033 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACGAGCTTTATATCTCGAGGCCGATG
*
85626079 CATGTCCCAGACATGTCTTACACGGGCTTTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACGAGCTTTATATCTCGAGGCCGATG
* * *
85626126 CATGTCCCAGACATGTCTTATACTG-GCTCTCATA-AT-GTA-GCCGATG
1 CATGTCCCAGACATGTCTTACAC-GAGCT-TTATATCTCG-AGGCCGATG
85626172 CATGTCCCAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
85626195 TAGCACACAT
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
46 68 0.50
47 38 0.28
48 30 0.22
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACGAGCTTTATATCTCGAGGCCGATG
Found at i:85626883 original size:20 final size:20
Alignment explanation
Indices: 85626858--85626896 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
85626848 AAAATTTCAA
85626858 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
85626878 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
85626897 AATAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:85642181 original size:43 final size:43
Alignment explanation
Indices: 85642118--85642271 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
85642108 AGCTCGTACA
* * *
85642118 ATGCC-ATATCCCAGATATGGTCTTACATGATATCACAT-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCACATAAT-G
* * *
85642160 ATGCCAATGTCCCATACATGGTCTTACACGAAATCATATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCACATAATG
85642203 ATGCCAATGTCCCAGACATGGTCTTACAT--AATCGTA-AT-ATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATC--ACATAATG
* * *
85642244 ATGCCACTATTCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
85642272 CATAATCACA
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
41 32 0.33
42 7 0.07
43 56 0.58
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCACATAATG
Found at i:85642279 original size:84 final size:85
Alignment explanation
Indices: 85642118--85642272 Score: 201
Period size: 84 Copynumber: 1.8 Consensus size: 85
85642108 AGCTCGTACA
* * *
85642118 ATGCCATATCCCAGATATGGTCTTACATGATATCACATATCGATGCCAATGTCCCATACATGGTC
1 ATGCCATATCCCAGACATGGTCTTACATGATATCACATATCGATGCCAATATCCCAGACATGGTC
85642183 TTACACGAAATCATATAATG
66 TTACACGAAATCATATAATG
* * *
85642203 ATGCCAATGTCCCAGACATGGTCTTACAT-A-ATCGTA-ATAT-GATGCCACTATTCCAGACATG
1 ATGCC-ATATCCCAGACATGGTCTTACATGATATC--ACATATCGATGCCAATATCCCAGACATG
85642264 GTCTTACAC
63 GTCTTACAC
85642273 ATAATCACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
84 29 0.48
85 10 0.16
86 22 0.36
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCTTACATGATATCACATATCGATGCCAATATCCCAGACATGGTC
TTACACGAAATCATATAATG
Found at i:85647060 original size:40 final size:40
Alignment explanation
Indices: 85647015--85647144 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
85647005 CGGAATATAA
85647015 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85647055 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
85647095 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
85647135 CCGGATATAA
1 CCGGATATAA
85647145 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85647159 original size:40 final size:39
Alignment explanation
Indices: 85647031--85647181 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
85647021 ATAACCATGT
* * *
85647031 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
85647071 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
85647111 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
85647150 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
85647182 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:85647165 original size:80 final size:79
Alignment explanation
Indices: 85647015--85647181 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
85647005 CGGAATATAA
*
85647015 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
85647080 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
85647095 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
85647157 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
85647174 CCGGATAT
1 CCGGATAT
85647182 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:85653789 original size:46 final size:46
Alignment explanation
Indices: 85653736--85653911 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
85653726 TATTTGGGCA
85653736 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
85653782 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
85653829 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
85653875 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85653912 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:85653891 original size:93 final size:93
Alignment explanation
Indices: 85653732--85653903 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85653722 GGGATATTTG
* *
85653732 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85653797 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
85653825 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85653890 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
85653904 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:85657821 original size:40 final size:40
Alignment explanation
Indices: 85657776--85657942 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
85657766 CGGAATATAA
*
85657776 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85657816 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
85657856 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
85657896 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
85657935 CCGGATAT
1 CCGGATAT
85657943 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:85657926 original size:80 final size:79
Alignment explanation
Indices: 85657792--85657942 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
85657782 ATAACCATGT
*
85657792 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
85657857 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
85657872 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
85657935 CCGGATAT
64 CCGGATAT
85657943 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:85663767 original size:46 final size:46
Alignment explanation
Indices: 85663714--85663889 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
85663704 TATTTGGGCA
85663714 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
85663760 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
85663807 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
85663853 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85663890 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:85663869 original size:93 final size:93
Alignment explanation
Indices: 85663710--85663881 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85663700 GGGATATTTG
* *
85663710 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85663775 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
85663803 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
85663868 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
85663882 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:85667882 original size:39 final size:38
Alignment explanation
Indices: 85667760--85667888 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
85667750 CGGAATATAA
*
85667760 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCA-CTGCAC-AATGCCTTCGGGTCTTAGC
* **
85667800 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
* *
85667840 CCGGATATAGCCACTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTGCACAA-TGCCTTCGGGTCTTAGC
85667879 CCGGATATAA
1 CCGGATATAA
85667889 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.03
39 30 0.39
40 44 0.58
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:85667909 original size:79 final size:79
Alignment explanation
Indices: 85667760--85667925 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
85667750 CGGAATATAA
* *
85667760 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
85667825 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
85667840 CCGGATATAGCCA-CTGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAAT
1 CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-
*
85667902 TGTCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
85667918 CCGGATAT
1 CCGGATAT
85667926 CATTCAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 17 0.23
79 46 0.61
80 12 0.16
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATCTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:85667921 original size:39 final size:38
Alignment explanation
Indices: 85667776--85667925 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 38
85667766 ATAACCATGT
* * * *
85667776 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-TA-GCCAC
85667816 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCAC
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
* *
85667854 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA-
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A--GCCAC
* *
85667895 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
85667926 CATTCAATTT
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
38 5 0.05
39 42 0.44
40 44 0.46
41 2 0.02
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCCAC
Done.