Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 277 of 410
Found at i:85671581 original size:1 final size:1
Alignment explanation
Indices: 85671575--85671611 Score: 74
Period size: 1 Copynumber: 37.0 Consensus size: 1
85671565 CTGATATACC
85671575 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
85671612 CGGAACTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:85673777 original size:80 final size:80
Alignment explanation
Indices: 85673693--85673841 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85673683 TATGGTAACC
* * * *
85673693 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85673757 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85673773 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85673838 CCGG
66 CCGG
85673842 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85673783 original size:40 final size:38
Alignment explanation
Indices: 85673734--85673841 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85673724 ATCACGATTT
*
85673734 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85673774 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85673814 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85673842 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85675621 original size:49 final size:49
Alignment explanation
Indices: 85675547--85675802 Score: 467
Period size: 49 Copynumber: 5.2 Consensus size: 49
85675537 ATTTGGGCTG
*
85675547 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
85675596 TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
*
85675645 TCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
*
85675694 TCACATATATATACATTTTCGCATTCATCACATCGTCCATTAGGCCTTA
1 TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
* *
85675743 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
85675792 TCACATATATA
1 TCACATATATA
85675803 CACTTCATAC
Statistics
Matches: 200, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 200 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTA
Found at i:85678762 original size:40 final size:40
Alignment explanation
Indices: 85678717--85678816 Score: 141
Period size: 40 Copynumber: 2.5 Consensus size: 40
85678707 GGATATAATG
*
85678717 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
85678757 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
85678797 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
85678817 ATCTTAGTCT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 48 0.89
41 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:85679638 original size:40 final size:40
Alignment explanation
Indices: 85679589--85679700 Score: 197
Period size: 40 Copynumber: 2.8 Consensus size: 40
85679579 CCAGCATGAT
* * *
85679589 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
85679629 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
85679669 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
85679701 CTCAATTCTC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:85681632 original size:37 final size:36
Alignment explanation
Indices: 85681582--85681668 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
85681572 TACGAAGTCT
*
85681582 TACCCAGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
85681618 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
85681655 TCACCCGGAACATA
1 T-ACCCGG-ACATA
85681669 TTTCCAAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:85681864 original size:49 final size:49
Alignment explanation
Indices: 85681743--85682093 Score: 585
Period size: 49 Copynumber: 7.1 Consensus size: 49
85681733 ACATATATAG
*
85681743 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCAC----ATAT
* *
85681796 ATATACATTTTCGCATTCATCACATCGACCATTAGGCCTTATCACATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
85681845 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
85681894 ATATACACTTTCGCGTTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
85681943 ATATACAGTTTCGCGTTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
85681992 ATATACAGTTTCGCATTCATCACATCGGTCATTAGGCCTTATCACATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
85682041 ATACACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
85682090 ATAT
1 ATAT
85682094 TCGGCCATTA
Statistics
Matches: 285, Mismatches: 13, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
49 243 0.85
53 42 0.15
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (49 bp):
ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:85682107 original size:29 final size:29
Alignment explanation
Indices: 85682065--85682122 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
85682055 ATTCATCACA
85682065 TCGGCCATTAGGCCTTATCACATATATAT
1 TCGGCCATTAGGCCTTATCACATATATAT
85682094 TCGGCCATTAGGCCTTATCACATATATAT
1 TCGGCCATTAGGCCTTATCACATATATAT
85682123 ACATTTTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (29 bp):
TCGGCCATTAGGCCTTATCACATATATAT
Found at i:85682114 original size:176 final size:176
Alignment explanation
Indices: 85681918--85682268 Score: 621
Period size: 176 Copynumber: 2.0 Consensus size: 176
85681908 GTTCATCACA
* *
85681918 TCGGCCATTAGGCCTTATCACATATATATACAGTTTCGCGTTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
* * *
85681983 ATCACATATATATACAGTTTCGCATTCATCACATCGGTCATTAGGCCTTATCACATATATACACA
66 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
*
85682048 CTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
131 CTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
85682094 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
*
85682159 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
*
85682224 TTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATA
131 CTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATA
85682269 ACATTTTCGC
Statistics
Matches: 166, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
176 166 1.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.33
Consensus pattern (176 bp):
TCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
CTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATAT
Found at i:85682117 original size:127 final size:127
Alignment explanation
Indices: 85681967--85682220 Score: 463
Period size: 127 Copynumber: 2.0 Consensus size: 127
85681957 GTTCATCACA
* *
85681967 TCGGCCATTAGGCCTTATCACATATATATACAGTTTCGCATTCATCACATCGGTCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
*
85682032 ATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
66 ATCACATATATACACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
85682094 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
*
85682159 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
66 ATCACATATATACACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
85682221 ACATTTTCGC
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
127 122 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (127 bp):
TCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATACACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
Found at i:85682119 original size:78 final size:78
Alignment explanation
Indices: 85682016--85682171 Score: 276
Period size: 78 Copynumber: 2.0 Consensus size: 78
85682006 ATTCATCACA
* *
85682016 TCGGTCATTAGGCCTTATCACATATATACACACTTTCGCATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
85682081 ATCACATATATAT
66 ATCACATATATAT
* *
85682094 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
85682159 ATCACATATATAT
66 ATCACATATATAT
85682172 ACACTTTCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (78 bp):
TCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATAT
Found at i:85682149 original size:49 final size:49
Alignment explanation
Indices: 85682094--85682364 Score: 474
Period size: 49 Copynumber: 5.6 Consensus size: 49
85682084 ACATATATAT
85682094 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
* *
85682143 TCGGCCATTAGGCCTTATCACATATATATACACTTTCCCATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
* *
85682192 TCGGCCATTAGGCCTTATCACATATATATACATTTTCGCATCCATCACA
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
*
85682241 TCGGCCATTAGGCCTTATCACATATATA-ACATTTTCGCATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
*
85682289 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
85682338 TC-GCCATTAGGCCTTATCACATATATA
1 TCGGCCATTAGGCCTTATCACATATATA
85682365 CACTTCATAC
Statistics
Matches: 213, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
48 72 0.34
49 141 0.66
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
Found at i:85682222 original size:225 final size:224
Alignment explanation
Indices: 85681869--85682317 Score: 799
Period size: 225 Copynumber: 2.0 Consensus size: 224
85681859 ATTCATCACA
* *
85681869 TCGGCCATTAGGCCTTATCACATATATATACACTTTCGCGTTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* * *
85681934 ATCACATATATATACAGTTTCGCGTTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
* *
85681999 GTTTCGCATTCATCACATCGGTCATTAGGCCTTATCACATATATACACACTTTCGCATTCATCAC
131 GTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACTTTCGCATTCATCAC
85682064 ATCGGCCATTAGGCCTTATCACATATATAT
195 ATCGGCCATTAGGCCTTATCACATATATAT
*
85682094 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
85682159 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
* *
85682224 TTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATAACATTTTCGCATTCATCACA
131 GTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCGCATTCATCACA
85682289 TCGGCCATTAGGCCTTATCACATATATAT
196 TCGGCCATTAGGCCTTATCACATATATAT
85682318 ACACTTTCAC
Statistics
Matches: 214, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
224 48 0.22
225 166 0.78
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.33
Consensus pattern (224 bp):
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
GTTTCGCATCCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCGCATTCATCACA
TCGGCCATTAGGCCTTATCACATATATAT
Found at i:85682297 original size:146 final size:146
Alignment explanation
Indices: 85682094--85682364 Score: 508
Period size: 146 Copynumber: 1.9 Consensus size: 146
85682084 ACATATATAT
85682094 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
*
85682159 ATCACATATATATACACTTTCCCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 ATCACATATATATACACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATATACA
85682224 TTTTCGCATCCATCACA
130 TTTTCGCATCCATCACA
*
85682241 TCGGCCATTAGGCCTTATCACATATATA-ACATTTTCGCATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
85682305 ATCACATATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATA
66 ATCACATATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATA
85682365 CACTTCATAC
Statistics
Matches: 122, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
145 25 0.20
146 69 0.57
147 28 0.23
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (146 bp):
TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATATACACTTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATATACAT
TTTCGCATCCATCACA
Found at i:85686193 original size:40 final size:39
Alignment explanation
Indices: 85686148--85686355 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
85686138 CGGAATACAA
*
85686148 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85686188 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85686228 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85686268 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85686308 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85686348 CCGGATAT
1 CCGGATAT
85686356 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85686288 original size:80 final size:81
Alignment explanation
Indices: 85686148--85686353 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
85686138 CGGAATACAA
* * *
85686148 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
85686212 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
85686228 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
85686291 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
85686308 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85686354 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:85694339 original size:40 final size:39
Alignment explanation
Indices: 85694294--85694501 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
85694284 CGGAATACAA
*
85694294 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85694334 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
85694374 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
85694414 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
85694454 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
85694494 CCGGATAT
1 CCGGATAT
85694502 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:85694434 original size:80 final size:81
Alignment explanation
Indices: 85694294--85694499 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
85694284 CGGAATACAA
* * *
85694294 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
85694358 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
85694374 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
85694437 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
85694454 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
85694500 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:85696673 original size:1 final size:1
Alignment explanation
Indices: 85696667--85696692 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
85696657 CAGTAGATGC
85696667 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
85696693 GGGATCCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:85698466 original size:6 final size:6
Alignment explanation
Indices: 85698443--85698481 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
85698433 CTCAAGCCCC
* * *
85698443 TGCACC TGCACC TGCACT TTCACT TGCACT TGCACT TGC
1 TGCACT TGCACT TGCACT TGCACT TGCACT TGCACT TGC
85698482 TACCACTACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (6 bp):
TGCACT
Found at i:85702418 original size:54 final size:54
Alignment explanation
Indices: 85702234--85702488 Score: 244
Period size: 54 Copynumber: 4.7 Consensus size: 54
85702224 CTTACCATTG
* * * * * * * * *
85702234 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGCCTTGGCATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATC
* *** * * *
85702287 ACATGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAATG
1 CCATGCCTTGGCATGGTCTTACATGATTTCC-TTACCTTATAG-AACTTATCAATC
** * *
85702342 CCATATCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTTTCAATC
1 CCATGCCTTGGCATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATC
* * * *
85702396 CCATGCCTTGGTATGGTCTTACATGATTTCCTTGCATTATAGAACTTATCAATG
1 CCATGCCTTGGCATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATC
* *
85702450 CCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 CCATGCCTTGGCATGGTCTTACATGATTTCCTTACCTTA
85702489 CCAAATGCCA
Statistics
Matches: 166, Mismatches: 32, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
52 2 0.01
53 30 0.18
54 90 0.54
55 42 0.25
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
CCATGCCTTGGCATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATC
Found at i:85702447 original size:108 final size:107
Alignment explanation
Indices: 85702221--85702488 Score: 313
Period size: 108 Copynumber: 2.5 Consensus size: 107
85702211 TTTCCTTTTT
* * * * *
85702221 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAAT
1 GAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTATGAACTCACCAAT
* *
85702286 GACATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
66 CACATGCCTTGGCATGGTCTTACATGGGACCTTTGCATTATA
* * * ***
85702328 GTAACTCATCAATGCCATATCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTTTCA
1 G-AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAT-GAACTCACCA
* * ***
85702393 ATCCCATGCCTTGGTATGGTCTTACATGATTTCC-TTGCATTATA
64 ATCACATGCCTTGGCATGGTCTTACATG-GGACCTTTGCATTATA
* * *
85702437 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTA
85702489 CCAAATGCCA
Statistics
Matches: 134, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
107 1 0.01
108 89 0.66
109 42 0.31
110 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (107 bp):
GAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTATGAACTCACCAAT
CACATGCCTTGGCATGGTCTTACATGGGACCTTTGCATTATA
Found at i:85703330 original size:30 final size:29
Alignment explanation
Indices: 85703296--85703355 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
85703286 TCCCTAACTC
*
85703296 AAACTTTGGACAAATTATAATTTTGCCCCT
1 AAACTTTGGA-AAATTATAATTTTGACCCT
* * *
85703326 AAACTTTGTAGAATTATGATTTTGACCCT
1 AAACTTTGGAAAATTATAATTTTGACCCT
85703355 A
1 A
85703356 GGCTCGGAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (29 bp):
AAACTTTGGAAAATTATAATTTTGACCCT
Found at i:85714291 original size:42 final size:41
Alignment explanation
Indices: 85714170--85714311 Score: 110
Period size: 42 Copynumber: 3.4 Consensus size: 41
85714160 TACCATACCA
* * ** *
85714170 ATGCCATTTCCCAGATATGGTCTT-ACATGGGATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTCACAT--AATCTCATTTCG
* * * *
85714212 ATGCCAGTAGCCTAGCTATGGTCTTACACGA-AGTCTCATTTCG
1 ATGCCA-TATCCCAGATATGGTCTT-CAC-ATAATCTCATTTCG
85714255 ATGCCATATCCCAGATATGGTCTTGCACATAATCTCATATT-G
1 ATGCCATATCCCAGATATGGTCTT-CACATAATCTCAT-TTCG
*
85714297 AAGCCATATCCCAGA
1 ATGCCATATCCCAGA
85714312 AATCATATTA
Statistics
Matches: 79, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 46 0.58
43 29 0.37
45 2 0.03
46 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTCACATAATCTCATTTCG
Found at i:85717842 original size:28 final size:29
Alignment explanation
Indices: 85717775--85717875 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
85717765 ATAGTGAATC
*
85717775 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
85717804 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
85717832 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
85717862 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85717876 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:85731512 original size:18 final size:19
Alignment explanation
Indices: 85731480--85731516 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
85731470 CCTTCGTTCT
*
85731480 CTTTTTCTTTTCCTCTTTC
1 CTTTTTCTTTGCCTCTTTC
85731499 CTTTTTC-TTGCCTCTTTC
1 CTTTTTCTTTGCCTCTTTC
85731517 ATCCTACCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.65
Consensus pattern (19 bp):
CTTTTTCTTTGCCTCTTTC
Found at i:85736437 original size:29 final size:29
Alignment explanation
Indices: 85736395--85736465 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
85736385 GACGAGATTA
85736395 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
85736424 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
85736453 GCACTAAGTGTGC
1 GCACTAAGTGTGC
85736466 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:85736481 original size:29 final size:29
Alignment explanation
Indices: 85736395--85736525 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 29
85736385 GACGAGATTA
* **
85736395 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
* **
85736424 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
**
85736453 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTCGAAACGTATG
* * * *
85736482 GCACTATGTGTGCGGGCT-TAAATCGCATG
1 GCACTAAGTGTGCGAGCTCGAAA-CGTATG
85736511 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
85736526 AATCGAGTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 85 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCGAAACGTATG
Found at i:85743876 original size:29 final size:29
Alignment explanation
Indices: 85743834--85743904 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
85743824 GACGAGATTA
85743834 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
85743863 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
85743892 GCACTAAGTGTGC
1 GCACTAAGTGTGC
85743905 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:85743920 original size:29 final size:29
Alignment explanation
Indices: 85743834--85743964 Score: 106
Period size: 29 Copynumber: 4.5 Consensus size: 29
85743824 GACGAGATTA
* **
85743834 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
* **
85743863 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
**
85743892 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTCGAAACGTATG
* * * *
85743921 GCACTATGTGTGCGGGCT-TAAATCGCATG
1 GCACTAAGTGTGCGAGCTCGAAA-CGTATG
85743950 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
85743965 AATCGAGTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 85 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCGAAACGTATG
Found at i:85744002 original size:2 final size:2
Alignment explanation
Indices: 85743997--85744025 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
85743987 GTGCGTACTC
85743997 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85744026 CTCCGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85745484 original size:40 final size:40
Alignment explanation
Indices: 85745439--85745606 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
85745429 CGGAATACAA
85745439 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
85745479 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
85745519 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
85745559 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
85745599 CCGGATAT
1 CCGGATAT
85745607 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:85749355 original size:40 final size:40
Alignment explanation
Indices: 85749296--85749460 Score: 258
Period size: 40 Copynumber: 4.1 Consensus size: 40
85749286 CATTTGAATG
*
85749296 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
85749336 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
85749376 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
85749416 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
85749456 ATATC
1 ATATC
85749461 GGCTAAATCC
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:85759391 original size:40 final size:40
Alignment explanation
Indices: 85759325--85759468 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
85759315 AAATTGAATG
* ** *
85759325 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ***
85759364 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
* * ** *
85759404 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCAAGAAACT
* *
85759444 CTATCCGGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
85759469 TTTGTGCACA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 16 0.19
40 70 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.20
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGAAACT
Found at i:85759489 original size:40 final size:39
Alignment explanation
Indices: 85759362--85759491 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
85759352 ATGCTGGAAA
* *
85759362 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
85759402 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
* *
85759442 TTCTATCCGGGCCAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
85759482 TTATATCCGG
1 TTATATCCGG
85759492 TTATATTCCG
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 71 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:85761579 original size:13 final size:13
Alignment explanation
Indices: 85761561--85761585 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85761551 CACTAAATTT
85761561 TCATGGATTCAAA
1 TCATGGATTCAAA
85761574 TCATGGATTCAA
1 TCATGGATTCAA
85761586 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:85765026 original size:39 final size:39
Alignment explanation
Indices: 85764963--85765236 Score: 435
Period size: 39 Copynumber: 7.1 Consensus size: 39
85764953 AATTTTATTA
* * *
85764963 CCAGCACAAAGCCTGTGGGACTTTAGCCTGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85765002 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
85765041 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
85765080 CCAGCACAAAGCCTGC-GGAC-TTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85765117 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
85765156 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
85765195 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85765234 CCA
1 CCA
85765237 TACACATTTC
Statistics
Matches: 217, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
37 31 0.14
38 6 0.03
39 180 0.83
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:85765187 original size:115 final size:116
Alignment explanation
Indices: 85764958--85765236 Score: 488
Period size: 115 Copynumber: 2.4 Consensus size: 116
85764948 CCCGAAATTT
* * *
85764958 TATTACCAGCACAAAGCCTGTGGGACTTTAGCCTGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTG-CGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
85765023 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
65 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
85765075 TATTTCCAGCACAAAGCCTGCGGAC-TTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCT
1 TATTTCCAGCACAAAGCCTGCGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCT
85765139 TTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
66 TTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
* *
85765190 TATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TATTTCCAGCACAAAGCCTGC-GGACTTTAGCCCGGATACATTTCCA
85765237 TACACATTTC
Statistics
Matches: 155, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
115 110 0.71
116 7 0.05
117 38 0.25
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (116 bp):
TATTTCCAGCACAAAGCCTGCGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCT
TTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
Found at i:85769687 original size:40 final size:40
Alignment explanation
Indices: 85769602--85769752 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
85769592 AATTGAATGA
* * * *
85769602 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
85769642 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
85769683 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
85769722 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
85769753 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:85769766 original size:40 final size:40
Alignment explanation
Indices: 85769639--85769768 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
85769629 ATGCTGGAAA
* * *
85769639 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
85769679 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
85769719 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
85769759 TTATATCCGG
1 TTATATCCGG
85769769 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:85769767 original size:80 final size:80
Alignment explanation
Indices: 85769601--85769768 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
85769591 AAATTGAATG
* *
85769601 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
85769666 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
85769681 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
85769744 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
85769761 ATATCCGG
1 ATATCCGG
85769769 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:85773894 original size:40 final size:40
Alignment explanation
Indices: 85773849--85773959 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
85773839 CTGGAAATTA
* *
85773849 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
85773890 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
* *
85773929 TATCTGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
85773960 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 53 0.87
41 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:85778445 original size:39 final size:39
Alignment explanation
Indices: 85778391--85778666 Score: 435
Period size: 39 Copynumber: 7.1 Consensus size: 39
85778381 AATTTTATTA
*
85778391 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85778430 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * * *
85778469 CCAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
85778508 CCAGCACGAAGCCTGCGGGACATTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85778547 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
85778586 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
85778625 CCAGCGCAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
85778664 CCA
1 CCA
85778667 TACACATTTC
Statistics
Matches: 220, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 220 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:85778597 original size:117 final size:117
Alignment explanation
Indices: 85778386--85778666 Score: 499
Period size: 117 Copynumber: 2.4 Consensus size: 117
85778376 CCCGAAATTT
*
85778386 TATTACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
85778451 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
* *
85778503 TATTTCCAGCACGAAGCCTGCGGGACATTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
*
85778568 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
* * *
85778620 TATTTCCAGCGCAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
85778667 TACACATTTC
Statistics
Matches: 155, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
117 155 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (117 bp):
TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATA
Found at i:85780845 original size:27 final size:27
Alignment explanation
Indices: 85780811--85780898 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
85780801 AGCATGGCTG
** *
85780811 CCAGAACAGATATTT-TGATAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
85780837 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
*
85780865 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
85780892 CCAGAAC
1 CCAGAAC
85780899 GCTTCCTCAA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 4 0.07
27 39 0.71
28 12 0.22
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:85781333 original size:16 final size:15
Alignment explanation
Indices: 85781312--85781342 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
85781302 CAAAATGCCA
85781312 GCTTTTCGGCATTTTG
1 GCTTTTCGGC-TTTTG
85781328 GCTTTTCGGCTTTTG
1 GCTTTTCGGCTTTTG
85781343 CCGATCTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.19, G:0.26, T:0.52
Consensus pattern (15 bp):
GCTTTTCGGCTTTTG
Found at i:85784676 original size:28 final size:27
Alignment explanation
Indices: 85784600--85784683 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 27
85784590 ATGGCTGCCA
* *
85784600 AAACAGATATTGTGACAGAGTCACCAG
1 AAACAGATATTGTGGCAGAGCCACCAG
* * *
85784627 ATATAGATATTGTGGTAGAGCCACCAG
1 AAACAGATATTGTGGCAGAGCCACCAG
*
85784654 AAACAGATATTTGTGGCAGAGCCACTAG
1 AAACAGATA-TTGTGGCAGAGCCACCAG
85784682 AA
1 AA
85784684 TGCTTCTTCC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 29 0.62
28 18 0.38
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (27 bp):
AAACAGATATTGTGGCAGAGCCACCAG
Found at i:85785964 original size:25 final size:24
Alignment explanation
Indices: 85785909--85785965 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
85785899 TTTCAGCCAG
85785909 AGAAGAA-AAGAAGGAGAAAAAGA
1 AGAAGAAGAAGAAGGAGAAAAAGA
*
85785932 AAATAGAAGAAGAGAGGAG-AAAAGA
1 AGA-AGAAGAAGA-AGGAGAAAAAGA
85785957 AGGAAGAAG
1 A-GAAGAAG
85785966 TCGACACTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 2 0.07
24 4 0.14
25 16 0.57
26 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (24 bp):
AGAAGAAGAAGAAGGAGAAAAAGA
Found at i:85788227 original size:14 final size:14
Alignment explanation
Indices: 85788208--85788238 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
85788198 CTCCGTTAAA
85788208 CGATTTCAAGCCCC
1 CGATTTCAAGCCCC
85788222 CGATTTCAAGCCCC
1 CGATTTCAAGCCCC
85788236 CGA
1 CGA
85788239 AACACCACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.42, G:0.16, T:0.19
Consensus pattern (14 bp):
CGATTTCAAGCCCC
Found at i:85791136 original size:23 final size:23
Alignment explanation
Indices: 85791110--85791156 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
85791100 CTTAATCACT
85791110 AAACAGACTTGCATCCTTGTCTG
1 AAACAGACTTGCATCCTTGTCTG
*
85791133 AAACAGTCTTGCATCCTTGTCTG
1 AAACAGACTTGCATCCTTGTCTG
85791156 A
1 A
85791157 TTTTGGCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (23 bp):
AAACAGACTTGCATCCTTGTCTG
Found at i:85811309 original size:28 final size:28
Alignment explanation
Indices: 85811277--85811346 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
85811267 ATAGTAAGTC
85811277 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
85811305 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
85811333 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85811347 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:85813774 original size:12 final size:12
Alignment explanation
Indices: 85813757--85813781 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85813747 ATTATGCTCT
85813757 CTGTAGCTGCTA
1 CTGTAGCTGCTA
85813769 CTGTAGCTGCTA
1 CTGTAGCTGCTA
85813781 C
1 C
85813782 CCTTTCTTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (12 bp):
CTGTAGCTGCTA
Found at i:85838064 original size:47 final size:47
Alignment explanation
Indices: 85837995--85838385 Score: 595
Period size: 47 Copynumber: 8.3 Consensus size: 47
85837985 CCCTTCGGGA
* *
85837995 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
85838042 CTTATCACATATATACACTTTCACATCCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
85838089 CTTACCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
85838136 CTTATCACATATATACACTTTCACA-TCTATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTC-ATCACATTGGCCATTAGGC
* *
85838183 CTTTTCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
85838230 CTTATCACATATATACACTTTCACATTCATCACATTGGCCGTTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
85838277 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
85838324 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
85838371 CTTATCACACATATA
1 CTTATCACACATATA
85838386 TGTATATCAT
Statistics
Matches: 307, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
46 2 0.01
47 303 0.99
48 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:85838161 original size:94 final size:94
Alignment explanation
Indices: 85837995--85838385 Score: 710
Period size: 94 Copynumber: 4.2 Consensus size: 94
85837985 CCCTTCGGGA
* *
85837995 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
85838060 TTTCACATCCATCACATTGGCCGTTCGGC
66 TTTCACATCCATCACATTGGCCGTTCGGC
*
85838089 CTTACCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
*
85838154 TTTCACATCTATCACATTGGCCGTTCGGC
66 TTTCACATCCATCACATTGGCCGTTCGGC
*
85838183 CTTTTCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
*
85838248 TTTCACATTCATCACATTGGCCGTTCGGC
66 TTTCACATCCATCACATTGGCCGTTCGGC
85838277 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
* *
85838342 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATCCATCACATTGGCCGTTCGGC
85838371 CTTATCACACATATA
1 CTTATCACACATATA
85838386 TGTATATCAT
Statistics
Matches: 287, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 287 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACATATATACAC
TTTCACATCCATCACATTGGCCGTTCGGC
Found at i:85840188 original size:51 final size:51
Alignment explanation
Indices: 85840099--85840539 Score: 413
Period size: 49 Copynumber: 8.5 Consensus size: 51
85840089 ATTCACATTA
* * * *
85840099 GCCATTTGGCTTTACCACATATATAGATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATAT--ATATACATTTTCACATTCATCACATCG
*
85840152 GGCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
*
85840203 GCCATTAGGCCTTATCAC--ATATATATACATTTTCGCATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
* * *
85840252 GCCATTAGGCCTTATCACATATAATGGCCTTATCACATATATAT-ACACTT--TCGCATTCA
1 GCCATTAGGCCTTATCACATAT-AT----ATAT-ACAT-T-T-TCACA-TTCATCACA-TCG
* * * * * * *
85840311 TCACA-TCGGCCATTAGGC-CTTATCACATATATATACAGTTTCGCATTCATCACATCG
1 GC-CATTAGGCC-TTA-TCACATAT-ATATAT----ACATTTTCACATTCATCACATCG
* *
85840368 GCCATTAGGCCTTATCAC--ATATATATACACTTCCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
* *
85840417 GCCATTAGGCCTTATCAC--ATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
*
85840466 GCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
85840515 GCCATTAGGCCTTATCACATATATA
1 GCCATTAGGCCTTATCACATATATA
85840540 CACTTCATAC
Statistics
Matches: 329, Mismatches: 33, Indels: 54
0.79 0.08 0.13
Matches are distributed among these distances:
49 181 0.55
51 50 0.15
52 2 0.01
53 25 0.08
54 2 0.01
55 1 0.00
56 15 0.05
57 15 0.05
58 10 0.03
59 14 0.04
60 13 0.04
61 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (51 bp):
GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCG
Found at i:85840306 original size:67 final size:67
Alignment explanation
Indices: 85840210--85840341 Score: 255
Period size: 67 Copynumber: 2.0 Consensus size: 67
85840200 TCGGCCATTA
*
85840210 GGCCTTATCACATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
85840275 AT
66 AT
85840277 GGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
85840342 TATACAGTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.33
Consensus pattern (67 bp):
GGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
AT
Found at i:85840313 original size:116 final size:117
Alignment explanation
Indices: 85840159--85840390 Score: 421
Period size: 116 Copynumber: 2.0 Consensus size: 117
85840149 TCGGGCATTA
*
85840159 GGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 GGCCTTATCACA-ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
85840224 TATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATAAT
65 TATATACAGTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATAAT
*
85840277 GGCCTTATCAC-ATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 GGCCTTATCACAATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
85840341 ATATACAGTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
66 ATATACAGTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
85840391 TATACACTTC
Statistics
Matches: 111, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
116 100 0.90
118 11 0.10
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (117 bp):
GGCCTTATCACAATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATATACAGTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATAAT
Found at i:85840393 original size:98 final size:98
Alignment explanation
Indices: 85840277--85840542 Score: 487
Period size: 98 Copynumber: 2.7 Consensus size: 98
85840267 CACATATAAT
*
85840277 GGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
* * *
85840342 TATACAGTTTCGCATTCATCACATCGGCCATTA
66 TACACACTTTCACATTCATCACATCGGCCATTA
*
85840375 GGCCTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
85840440 TACACACTTTCACATTCATCACATCGGCCATTA
66 TACACACTTTCACATTCATCACATCGGCCATTA
85840473 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
85840538 TACAC
66 TACAC
85840543 TTCATACATA
Statistics
Matches: 162, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 162 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (98 bp):
GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TACACACTTTCACATTCATCACATCGGCCATTA
Found at i:85843504 original size:40 final size:40
Alignment explanation
Indices: 85843451--85843587 Score: 215
Period size: 40 Copynumber: 3.4 Consensus size: 40
85843441 GGATATAATG
* *
85843451 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGGTT-TAGTA
*
85843491 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
85843531 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
85843571 ACTCGCACAAATGCCTT
1 ACTCGCACAAATGCCTT
85843588 TGGATCTTAG
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
40 85 0.93
41 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:85843627 original size:80 final size:81
Alignment explanation
Indices: 85843425--85843642 Score: 214
Period size: 80 Copynumber: 2.7 Consensus size: 81
85843415 GAATCACGTA
* * * * * * *
85843425 CCTTCGGAATTTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTAT
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAA-CCCGGGTTAT
*
85843487 AGTAACTCGCACGAATG
65 AGTAACTCGCACAAATG
* * *
85843504 CCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGGTT-TA
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGGTTATA
85843568 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
* ** * * *
85843584 CCTT-TGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 CCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGG
85843643 ACATCATTCA
Statistics
Matches: 116, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
79 15 0.13
80 87 0.75
81 14 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGGTTATA
GTAACTCGCACAAATG
Found at i:85843637 original size:40 final size:40
Alignment explanation
Indices: 85843439--85843643 Score: 189
Period size: 40 Copynumber: 5.1 Consensus size: 40
85843429 CGGAATTTAA
* * * * **
85843439 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACAAAGC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
85843479 CCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
85843519 CCGGGTTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
* * * * *
85843559 CCGGGTTTAGTAACTCGCACAAATGCCTT-TGGATCTTAGT
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGA-CTTAGC
* *
85843599 CTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGC
85843639 CCGGA
1 CCGGA
85843644 CATCATTCAA
Statistics
Matches: 140, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 126 0.90
41 11 0.08
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:85844412 original size:40 final size:40
Alignment explanation
Indices: 85844363--85844474 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
85844353 CCAGCATGAT
* * *
85844363 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
85844403 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
85844443 TGCTCTTTGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
85844475 CTCAATTCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:85846408 original size:37 final size:36
Alignment explanation
Indices: 85846358--85846444 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
85846348 TACGAAGTCT
85846358 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
85846394 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
85846431 TCACCCGGAACATA
1 T-ACCCGG-ACATA
85846445 TTTCCAAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:85846638 original size:49 final size:49
Alignment explanation
Indices: 85846519--85846817 Score: 508
Period size: 49 Copynumber: 6.1 Consensus size: 49
85846509 ACATATATAG
85846519 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
*
85846570 ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
85846619 ATATACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* * *
85846668 ATATACAGTTTCGCGTTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
85846717 ATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
85846766 ATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
85846815 ATA
1 ATA
85846818 CACTTCATAC
Statistics
Matches: 238, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 194 0.82
51 44 0.18
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:85849790 original size:40 final size:40
Alignment explanation
Indices: 85849737--85849928 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
85849727 GGATATAATG
* *
85849737 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGGTT-TAGTA
* *
85849777 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
85849817 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
** * * * *
85849857 ACTCGCACAAATGCCTTC-GGATCTTAGTCTGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGGTTTAGTA
* *
85849897 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGG
85849929 ACATCATTCA
Statistics
Matches: 132, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.02
40 112 0.85
41 17 0.13
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:85849913 original size:80 final size:81
Alignment explanation
Indices: 85849711--85849928 Score: 223
Period size: 80 Copynumber: 2.7 Consensus size: 81
85849701 GAATCACGTA
* * * * * *
85849711 CCTTCGGAATTTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTAT
1 CCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAA-CCCGGGTTAT
*
85849773 AGTAACTCGCACGAATG
65 AGTAACTCGCACAAATG
* * *
85849790 CCTTCGGGACTTAACCCGGGTTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGGTT-TA
1 CCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAACCCGGGTTATA
85849854 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
** * * * *
85849870 CCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 CCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAAATGCCTTCGGGACTTAACCCGG
85849929 ACATCATTCA
Statistics
Matches: 117, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 15 0.13
80 88 0.75
81 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAACCCGGGTTATA
GTAACTCGCACAAATG
Found at i:85850711 original size:40 final size:40
Alignment explanation
Indices: 85850649--85850760 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
85850639 CCAGCATGAT
* * *
85850649 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
85850689 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
85850729 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
85850761 CTCAATTCTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:85852693 original size:37 final size:37
Alignment explanation
Indices: 85852643--85852715 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
85852633 TACGAAGTCT
85852643 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
85852680 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
85852716 TCACCCAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
Found at i:85854374 original size:80 final size:80
Alignment explanation
Indices: 85854290--85854438 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85854280 TATGGTAACC
* * * *
85854290 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85854354 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85854370 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85854435 CCGG
66 CCGG
85854439 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85854380 original size:40 final size:38
Alignment explanation
Indices: 85854331--85854438 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85854321 ATCACGATTT
*
85854331 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85854371 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85854411 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85854439 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85862469 original size:80 final size:80
Alignment explanation
Indices: 85862385--85862533 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
85862375 TATGGTAACC
* * * *
85862385 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
85862449 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
85862465 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
85862530 CCGG
66 CCGG
85862534 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:85862475 original size:40 final size:38
Alignment explanation
Indices: 85862426--85862533 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
85862416 ATCACGATTT
*
85862426 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
85862466 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
85862506 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
85862534 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:85870643 original size:2 final size:2
Alignment explanation
Indices: 85870636--85870664 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
85870626 ACATTCGGCC
85870636 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
85870665 GCATGTGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:85873945 original size:40 final size:40
Alignment explanation
Indices: 85873879--85874045 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
85873869 AAATTGAATG
* * *
85873879 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
85873918 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
85873958 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
85873998 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
85874038 ATATCCGG
1 ATATCCGG
85874046 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:85877015 original size:42 final size:41
Alignment explanation
Indices: 85876880--85877021 Score: 158
Period size: 41 Copynumber: 3.4 Consensus size: 41
85876870 ACTCGAGAAA
* * * * *
85876880 CTCGCACACTTAGCGCCAAATAAATAGCTGAAGCTATATCGAT
1 CTCGCACACTAAGTG-CAAATATATAGC-CAAGCTATCTCGAT
* * * *
85876923 CTCGCACACTAAGTGCCAATATATAGTCGAGCTATCTCGGT
1 CTCGCACACTAAGTGCAAATATATAGCCAAGCTATCTCGAT
*
85876964 CTCGCACACTAAGTGCAAATATATAGCCAAAGCAATCTCGAT
1 CTCGCACACTAAGTGCAAATATATAGCC-AAGCTATCTCGAT
*
85877006 TTCGCACACTAAGTGC
1 CTCGCACACTAAGTGC
85877022 CCATAATTAG
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
41 36 0.43
42 34 0.41
43 13 0.16
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (41 bp):
CTCGCACACTAAGTGCAAATATATAGCCAAGCTATCTCGAT
Found at i:85888793 original size:10 final size:10
Alignment explanation
Indices: 85888778--85888803 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
85888768 AAAGGACCTA
85888778 TTTGTAAAAG
1 TTTGTAAAAG
85888788 TTTGTAAAAG
1 TTTGTAAAAG
85888798 TTTGTA
1 TTTGTA
85888804 GAATGGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (10 bp):
TTTGTAAAAG
Found at i:85889340 original size:39 final size:41
Alignment explanation
Indices: 85889291--85889398 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 41
85889281 GTTGAGATTA
85889291 CGTGTAAGACCATATCTGGGATATGGAATCAATATGAGA-T
1 CGTGTAAGACCATATCTGGGATATGGAATCAATATGAGACT
* * * *
85889331 -GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCT
1 CGTGTAAGACCATATCTGGGATA-TGGAATCAATATGAGA-CT
*
85889373 CATGTAAGACCATATCTGGGATATGG
1 CGTGTAAGACCATATCTGGGATATGG
85889399 CATTGGTACA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 20 0.35
40 14 0.25
42 4 0.07
43 19 0.33
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (41 bp):
CGTGTAAGACCATATCTGGGATATGGAATCAATATGAGACT
Found at i:85895932 original size:15 final size:15
Alignment explanation
Indices: 85895912--85895940 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
85895902 TAATTTGAGA
85895912 AAAAATAAAATAAAG
1 AAAAATAAAATAAAG
85895927 AAAAATAAAATAAA
1 AAAAATAAAATAAA
85895941 AAACTTATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (15 bp):
AAAAATAAAATAAAG
Found at i:85906230 original size:12 final size:12
Alignment explanation
Indices: 85906213--85906253 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
85906203 GGAGATAGGA
85906213 AAAACAGGTTCC
1 AAAACAGGTTCC
*
85906225 AAAACAGG---A
1 AAAACAGGTTCC
85906234 AAAACAGGTTCC
1 AAAACAGGTTCC
85906246 AAAACAGG
1 AAAACAGG
85906254 AAAAACAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10
Consensus pattern (12 bp):
AAAACAGGTTCC
Found at i:85906234 original size:21 final size:21
Alignment explanation
Indices: 85906209--85906261 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
85906199 CAGTGGAGAT
85906209 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
85906230 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
85906251 AGGAAAAACAG
1 AGGAAAAACAG
85906262 TGGCTGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.55, C:0.17, G:0.21, T:0.08
Consensus pattern (21 bp):
AGGAAAAACAGGTTCCAAAAC
Found at i:85911272 original size:23 final size:23
Alignment explanation
Indices: 85911214--85911283 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
85911204 TTCGTTTAAG
*
85911214 TTAAATGAACTTGTTTGTGAACA
1 TTAAATGAACATGTTTGTGAACA
*
85911237 TTAAA-CAATCATGTTTGTGAACA
1 TTAAATGAA-CATGTTTGTGAACA
**
85911260 TTAAATGAACATGTTCATGAACA
1 TTAAATGAACATGTTTGTGAACA
85911283 T
1 T
85911284 ATACTTGAGC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 2 0.05
23 36 0.90
24 2 0.05
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (23 bp):
TTAAATGAACATGTTTGTGAACA
Found at i:85911332 original size:4 final size:4
Alignment explanation
Indices: 85911323--85911351 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
85911313 CTGAATAATG
85911323 AACA AACA AACA AACA AACA AACA AACA A
1 AACA AACA AACA AACA AACA AACA AACA A
85911352 TAAATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
AACA
Found at i:85912436 original size:7 final size:7
Alignment explanation
Indices: 85912426--85912452 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
85912416 TGTTGGCGCT
85912426 TTATTTA
1 TTATTTA
85912433 TTATTTA
1 TTATTTA
85912440 TTATTTA
1 TTATTTA
85912447 TTATTT
1 TTATTT
85912453 TTACCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTATTTA
Found at i:85920952 original size:38 final size:38
Alignment explanation
Indices: 85920896--85921085 Score: 254
Period size: 38 Copynumber: 4.9 Consensus size: 38
85920886 ATATTTGATG
* *
85920896 TATATCTGGGTTAAATCCCGCAAGCTTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
** *
85920934 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
** *
85920972 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
85921010 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
* * * *
85921048 TATATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATATCCG-GGTTAAA-TCCCGCAGGCTTAGTGCTGGT
85921086 GACTGGATTC
Statistics
Matches: 138, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 113 0.82
39 6 0.04
40 19 0.14
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
Found at i:85921953 original size:2 final size:2
Alignment explanation
Indices: 85921946--85921973 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
85921936 TGAAAACGTG
85921946 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85921974 TCATTGATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85928679 original size:26 final size:26
Alignment explanation
Indices: 85928650--85928757 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
85928640 TGAAATTCCA
*
85928650 ATCATGGAACATTTACATAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85928676 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85928702 ATCATGGAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85928728 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85928754 ATCA
1 ATCA
85928758 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85930095 original size:38 final size:38
Alignment explanation
Indices: 85930039--85930228 Score: 254
Period size: 38 Copynumber: 4.9 Consensus size: 38
85930029 ATATTTGATG
*
85930039 TATATCCGGGTTAAATCCCGCAGGTTTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
** *
85930077 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
** * *
85930115 TATATCCGGGTTTTATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
85930153 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
* * * *
85930191 TATATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATATCCG-GGTTAAA-TCCCGCAGGCTTAGTGCTGGT
85930229 GACTGGATTC
Statistics
Matches: 137, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 112 0.82
39 6 0.04
40 19 0.14
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
Found at i:85932376 original size:78 final size:78
Alignment explanation
Indices: 85932243--85932394 Score: 227
Period size: 78 Copynumber: 1.9 Consensus size: 78
85932233 GAGTCACATA
* *
85932243 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTTAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
85932308 AATGAATCATAAC
66 AATGAATCATAAC
*
85932321 TCATGTAAC-GTA-TCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACC
1 TCATGTAACTGTAGT-GAATCAGGATTA-CCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACC
* *
85932384 GTAGTGAATCA
64 ATAATGAATCA
85932395 GGAATAAATC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
76 1 0.01
77 15 0.22
78 51 0.76
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.32
Consensus pattern (78 bp):
TCATGTAACTGTAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
AATGAATCATAAC
Found at i:85932407 original size:40 final size:40
Alignment explanation
Indices: 85932359--85932496 Score: 195
Period size: 40 Copynumber: 3.5 Consensus size: 40
85932349 CTTTTCAGGT
* * *
85932359 CAAATCCTATCCGCCTTAAGTTACCGTAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * *
85932399 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* **
85932439 CAAATCCTATCCACTTTAAGGTATTATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
85932479 CAAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
85932497 TATTCTCGAG
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
Found at i:85934170 original size:10 final size:10
Alignment explanation
Indices: 85934144--85934186 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
85934134 TTATATATTA
85934144 AATAAATTAAT
1 AATAAA-TAAT
85934155 AA-AAATAAT
1 AATAAATAAT
85934164 AATAAATAAT
1 AATAAATAAT
*
85934174 AAAAAATAA-
1 AATAAATAAT
85934183 AATA
1 AATA
85934187 TCTCATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 9 0.31
10 18 0.62
11 2 0.07
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
AATAAATAAT
Found at i:85934179 original size:20 final size:19
Alignment explanation
Indices: 85934143--85934186 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
85934133 CTTATATATT
85934143 AAATAAATTAATAAAAATA
1 AAATAAATTAATAAAAATA
85934162 ATAATAAA-TAATAAAAAATA
1 A-AATAAATTAAT-AAAAATA
85934182 AAATA
1 AAATA
85934187 TCTCATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATAAATTAATAAAAATA
Found at i:85936126 original size:49 final size:49
Alignment explanation
Indices: 85936034--85936302 Score: 219
Period size: 49 Copynumber: 5.6 Consensus size: 49
85936024 CATCAAAGTT
* * *
85936034 GATGACATGTCCCAGACAGGTTTTACACTGACTTTCATATATCGAG-GCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGCC
* * * * * *
85936083 GATGCCGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCGGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCC
* * * * * *
85936132 GATTCCATATCCCAGACAGGTCTTATACTAACTTTTATATATCGAG-GCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGCC
* ** * * *
85936181 GATGCCGTGTCCCAGACATTTCTTACACTGGCTCTCATCTATCGGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCC
* * * * * *
85936230 GATGCCATGTCCCAAATAGGTCTTACACTGACACACA-ATA----AGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCC
*
85936274 GACGCCATGTCCCAGACAGGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
85936303 AACTTGTATT
Statistics
Matches: 169, Mismatches: 48, Indels: 11
0.74 0.21 0.05
Matches are distributed among these distances:
44 27 0.16
48 4 0.02
49 137 0.81
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCC
Found at i:85936172 original size:98 final size:98
Alignment explanation
Indices: 85936034--85936258 Score: 324
Period size: 98 Copynumber: 2.3 Consensus size: 98
85936024 CATCAAAGTT
* * * * *
85936034 GATGACATGTCCCAGACAGGTTTTACACTGACTTTCATATATCGAGGCCGATGCCGTGTCCTAGA
1 GATGCCATATCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCGTGTCCCAGA
*
85936099 TAGGTCTTACACTGGCTCTCATCTATCGGTGTC
66 CAGGTCTTACACTGGCTCTCATCTATCGGTGTC
* * *
85936132 GATTCCATATCCCAGACAGGTCTTATACTAACTTTTATATATCGAGGCCGATGCCGTGTCCCAGA
1 GATGCCATATCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCGTGTCCCAGA
**
85936197 CATTTCTTACACTGGCTCTCATCTATCGGTGTC
66 CAGGTCTTACACTGGCTCTCATCTATCGGTGTC
* * *
85936230 GATGCCATGTCCCAAATAGGTCTTACACT
1 GATGCCATATCCCAGACAGGTCTTACACT
85936259 GACACACAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
98 111 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (98 bp):
GATGCCATATCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCGTGTCCCAGA
CAGGTCTTACACTGGCTCTCATCTATCGGTGTC
Found at i:85936387 original size:46 final size:48
Alignment explanation
Indices: 85936279--85936397 Score: 152
Period size: 46 Copynumber: 2.5 Consensus size: 48
85936269 AAGCTGACGC
* ** * *
85936279 CATGTCCCAGACAGGTCTTACACTAACTTGTATTTCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAACTTGTACGTCTCAAGGCTAATG
* * *
85936327 CATGTCCCAAACATGTCTTACACTAACTT-T-CGTCTTAATGCTAATG
1 CATGTCCCAGACATGTCTTACACTAACTTGTACGTCTCAAGGCTAATG
85936373 CATGTCCCAGACATGTCTTACACTA
1 CATGTCCCAGACATGTCTTACACTA
85936398 GCACACATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 34 0.55
47 1 0.02
48 27 0.44
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAACTTGTACGTCTCAAGGCTAATG
Found at i:85938377 original size:18 final size:18
Alignment explanation
Indices: 85938353--85938394 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
85938343 GCTAAATTTT
*
85938353 ATAATTTAAATAACTCAA
1 ATAATTTAAACAACTCAA
* *
85938371 GTAATTTGAACAACTCAA
1 ATAATTTAAACAACTCAA
85938389 ATAATT
1 ATAATT
85938395 CGAACAACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (18 bp):
ATAATTTAAACAACTCAA
Found at i:85938399 original size:18 final size:18
Alignment explanation
Indices: 85938364--85938402 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
85938354 TAATTTAAAT
* *
85938364 AACTCAAGTAATTTGAAC
1 AACTCAAATAATTCGAAC
85938382 AACTCAAATAATTCGAAC
1 AACTCAAATAATTCGAAC
85938400 AAC
1 AAC
85938403 AAATCGATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (18 bp):
AACTCAAATAATTCGAAC
Found at i:85943235 original size:5 final size:6
Alignment explanation
Indices: 85943218--85943244 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
85943208 TAAAAAATAT
85943218 ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATA
85943245 TATAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:85943534 original size:23 final size:23
Alignment explanation
Indices: 85943500--85943568 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
85943490 CATTTTGAAT
85943500 TTTTAGAA-TTTAAAAATATATA
1 TTTTAGAATTTTAAAAATATATA
85943522 TTTTAGAATTTTATAAAA-ATCAT-
1 TTTTAGAATTTTA-AAAATAT-ATA
* * *
85943545 TTTTAAAATTTTAAGACTATATA
1 TTTTAGAATTTTAAAAATATATA
85943568 T
1 T
85943569 ATAATACTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
22 12 0.31
23 21 0.54
24 6 0.15
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (23 bp):
TTTTAGAATTTTAAAAATATATA
Found at i:85943733 original size:32 final size:36
Alignment explanation
Indices: 85943666--85943742 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 36
85943656 CAAAAATGTT
*
85943666 TTTTAATATTTAAATATTTAATATTATAATTTTTTTA
1 TTTTAA-ATTTAAATATTTAATATTATAATGTTTTTA
85943703 TTTTAAATTT-AA-ATTTAA-ATT-TAATGTTTTTA
1 TTTTAAATTTAAATATTTAATATTATAATGTTTTTA
*
85943735 TTCTAAAT
1 TTTTAAAT
85943743 AAATCTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
32 17 0.45
33 3 0.08
34 6 0.16
35 2 0.05
36 4 0.11
37 6 0.16
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (36 bp):
TTTTAAATTTAAATATTTAATATTATAATGTTTTTA
Found at i:85946701 original size:47 final size:47
Alignment explanation
Indices: 85946628--85946765 Score: 233
Period size: 47 Copynumber: 3.0 Consensus size: 47
85946618 ACACTCCGGG
* * *
85946628 ATAA-ACACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATT
1 ATAATACACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACATT
85946674 ATAATACACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACATT
1 ATAATACACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACATT
*
85946721 ATAGTACACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACA
1 ATAATACACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACA
85946766 GTAGTCGACA
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 4 0.05
47 83 0.95
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.26
Consensus pattern (47 bp):
ATAATACACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACATT
Found at i:85949543 original size:30 final size:29
Alignment explanation
Indices: 85949478--85949544 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
85949468 ATCGAAGGGT
* * *
85949478 AAAAATGGCAGCTTCGTTAAGTTTATAAT
1 AAAAATGACAGCTCCGTTAAGTTTATAAG
* *
85949507 AGAAAATGATAGCTCCGTTAAGTTTGTAACG
1 A-AAAATGACAGCTCCGTTAAGTTTATAA-G
85949538 AAAAATG
1 AAAAATG
85949545 GTTAGTGGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 1 0.03
30 29 0.94
31 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.30
Consensus pattern (29 bp):
AAAAATGACAGCTCCGTTAAGTTTATAAG
Found at i:85954281 original size:44 final size:44
Alignment explanation
Indices: 85954218--85954306 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
85954208 AATAAATGAG
85954218 TTAATTTTGAATGTATATGGATCAAGAACGAAAGAAATCAGAAT
1 TTAATTTTGAATGTATATGGATCAAGAACGAAAGAAATCAGAAT
* *
85954262 TTAATTTTGAATGTATATGGATTAAGAACGAAAGAAATCGGAAT
1 TTAATTTTGAATGTATATGGATCAAGAACGAAAGAAATCAGAAT
85954306 T
1 T
85954307 AGATCGGGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (44 bp):
TTAATTTTGAATGTATATGGATCAAGAACGAAAGAAATCAGAAT
Found at i:85954665 original size:43 final size:43
Alignment explanation
Indices: 85954551--85954701 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
85954541 GATTAACGAG
* * ***
85954551 ATGTGAATATGTGTAAGACCATGTCTACAACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
*
85954594 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * * *
85954637 ATTTGATTTCGTGTAAGACCATAG-CTGGG-CTATCGGCATCAAT
1 ATGTGATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGCATCATT
* *
85954680 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
85954702 ATTTGGGATA
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 89 0.98
44 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:85963728 original size:31 final size:31
Alignment explanation
Indices: 85963693--85963759 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
85963683 TTTTTAAAGT
85963693 TTGTTGGATACTAAAATTTTATATG-TTAAGA
1 TTGTTGGATACTAAAATTTTA-ATGCTTAAGA
** * *
85963724 TTGTTGGATGTTGAAATTTTAATGCTTAAGT
1 TTGTTGGATACTAAAATTTTAATGCTTAAGA
85963755 TTGTT
1 TTGTT
85963760 AAGTATTGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 3 0.10
31 28 0.90
ACGTcount: A:0.28, C:0.03, G:0.19, T:0.49
Consensus pattern (31 bp):
TTGTTGGATACTAAAATTTTAATGCTTAAGA
Found at i:85963774 original size:31 final size:32
Alignment explanation
Indices: 85963734--85963807 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
85963724 TTGTTGGATG
*
85963734 TTGAAATTTTAATG-CTTAAGTTTGTT-AAGTA
1 TTGAAATTTTAATGTCTTAAGTTGGTTGAA-TA
* * *
85963765 TTGACATTTTTATGTTTTAAGTTGGTTGAATA
1 TTGAAATTTTAATGTCTTAAGTTGGTTGAATA
*
85963797 TTGAAAATTTA
1 TTGAAATTTTA
85963808 TAGGTTTGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
31 12 0.35
32 20 0.59
33 2 0.06
ACGTcount: A:0.31, C:0.03, G:0.16, T:0.50
Consensus pattern (32 bp):
TTGAAATTTTAATGTCTTAAGTTGGTTGAATA
Found at i:85967521 original size:17 final size:18
Alignment explanation
Indices: 85967499--85967532 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85967489 CAATTTGGGC
85967499 CGTGT-GACCCACACGGA
1 CGTGTGGACCCACACGGA
*
85967516 CGTGTGGGCCCACACGG
1 CGTGTGGACCCACACGG
85967533 GAAGGGCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.35, G:0.35, T:0.12
Consensus pattern (18 bp):
CGTGTGGACCCACACGGA
Found at i:85969793 original size:39 final size:39
Alignment explanation
Indices: 85969746--85969928 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
85969736 AATGTTCGAG
85969746 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
85969785 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
85969824 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
85969863 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
85969903 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
85969929 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:85976493 original size:39 final size:39
Alignment explanation
Indices: 85976446--85976628 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
85976436 AATGTTCGAG
85976446 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
85976485 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
85976524 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
85976563 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
85976603 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
85976629 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:85984681 original size:24 final size:24
Alignment explanation
Indices: 85984654--85984744 Score: 164
Period size: 24 Copynumber: 3.8 Consensus size: 24
85984644 GCTGGAAATA
85984654 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
85984678 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
85984702 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
85984726 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
85984745 ACATAATAAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:85984758 original size:48 final size:48
Alignment explanation
Indices: 85984653--85984766 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 48
85984643 TGCTGGAAAT
* * **
85984653 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTA
1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA
* * *
85984701 CTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATA
1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATA
85984750 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
85984767 CACATTCGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 53 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (48 bp):
ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA
Found at i:85991649 original size:24 final size:24
Alignment explanation
Indices: 85991622--85991712 Score: 164
Period size: 24 Copynumber: 3.8 Consensus size: 24
85991612 GCTGGAAATA
85991622 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
85991646 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
85991670 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
85991694 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
85991713 ACATAATAAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:85991726 original size:48 final size:48
Alignment explanation
Indices: 85991621--85991734 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 48
85991611 TGCTGGAAAT
* * **
85991621 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTA
1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA
* * *
85991669 CTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATA
1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATA
85991718 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
85991735 CACATTCGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 53 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (48 bp):
ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA
Found at i:85995057 original size:26 final size:24
Alignment explanation
Indices: 85995027--85995088 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
85995017 GATGATAACA
85995027 TGTGATAGTAGAACATATGAAGAAGC
1 TGTGATAGTA-AA-ATATGAAGAAGC
* * *
85995053 TGTGATGGTAAAATGTGACGAAGC
1 TGTGATAGTAAAATATGAAGAAGC
*
85995077 TGTGATGGTAAA
1 TGTGATAGTAAA
85995089 CTTTATATAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 22 0.67
25 2 0.06
26 9 0.27
ACGTcount: A:0.37, C:0.06, G:0.31, T:0.26
Consensus pattern (24 bp):
TGTGATAGTAAAATATGAAGAAGC
Found at i:85998141 original size:33 final size:33
Alignment explanation
Indices: 85998062--85998142 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
85998052 TGCATTTTGC
* *
85998062 ACTGTACTGATACCGAATAGGGCTTTGGCCCAG
1 ACTGTACTGATACTGAATAGGGCTTTGGCCCAA
85998095 ACTGTACTGATACTGAATAGGGCTTTGGCCCAA
1 ACTGTACTGATACTGAATAGGGCTTTGGCCCAA
85998128 ACTGTACTGATACTG
1 ACTGTACTGATACTG
85998143 TGTTATTCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAGGGCTTTGGCCCAA
Found at i:86004194 original size:38 final size:38
Alignment explanation
Indices: 86004143--86004418 Score: 444
Period size: 38 Copynumber: 7.3 Consensus size: 38
86004133 ATATTTGATG
*
86004143 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
86004181 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
86004219 TATGTCCGGGTTAAATCCCACAGGCTTCGTGCTGATAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
86004257 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
** *
86004295 TATATCCGGGTTAAATCCCATAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
86004333 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
86004371 TATATCCGGGTTAAATCCCGTAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
86004409 TATATTCGGG
1 TATATCCGGG
86004419 CCTTTGAGCC
Statistics
Matches: 219, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 219 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:86006528 original size:77 final size:81
Alignment explanation
Indices: 86006415--86006595 Score: 221
Period size: 77 Copynumber: 2.3 Consensus size: 81
86006405 GACTCGCTCA
** * *
86006415 AATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCGG
*
86006478 -TTTAGTAACTT-GCAC
65 ATATAGTAACTTAGCAC
* **
86006493 AATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
86006556 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
86006572 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
86006596 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
76 3 0.03
77 36 0.41
78 23 0.26
79 15 0.17
80 11 0.12
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCAC
Found at i:86006595 original size:40 final size:39
Alignment explanation
Indices: 86006406--86006595 Score: 179
Period size: 40 Copynumber: 4.8 Consensus size: 39
86006396 GGATATAACG
* ** * *
86006406 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
86006446 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
86006485 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
86006523 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATATAGTA
* *
86006563 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
86006596 CATCATTCGA
Statistics
Matches: 124, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
37 9 0.07
38 27 0.22
39 21 0.17
40 59 0.48
41 8 0.06
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:86011243 original size:78 final size:80
Alignment explanation
Indices: 86011161--86011311 Score: 202
Period size: 78 Copynumber: 1.9 Consensus size: 80
86011151 GGTTATAGCG
* * * *
86011161 ACTCGCACGAATGCTGCTTCGGA-CTTA-ACCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-C
1 ACTCGCACGAATGC--CTTCGGATCCTAGACCGGATATAGTAACTTAGCACAAAGCCTTCGGGAC
86011222 TTAGCCCGGATTTATTA
64 TTAGCCCGGATTTATTA
* *
86011239 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAGACCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
86011304 AGCCCGGA
66 AGCCCGGA
86011312 CATCATTCGA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
76 7 0.11
77 3 0.05
78 27 0.43
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAGACCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:86011311 original size:40 final size:39
Alignment explanation
Indices: 86011130--86011311 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
86011120 GACTCGCTCA
** * ** *
86011130 AATGCCTTCGGGACGAAGCCCGGTTATAGCGACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
86011169 GAATGCTGCTTC-GGACTTA-ACCGGGTTTAGTAACTTGCAC
1 -AATGC--CTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
86011209 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
86011247 GAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCAC
*
86011288 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
86011312 CATCATTCGA
Statistics
Matches: 112, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
37 8 0.07
38 21 0.19
39 14 0.12
40 53 0.47
41 12 0.11
42 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
Done.