Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 278 of 410
Found at i:86019218 original size:39 final size:40
Alignment explanation
Indices: 86019127--86019316 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
86019117 GGATATAACG
* * ** *
86019127 ACTCGCTCAAATGCCTTC-GGACGAAGCCCGG-TTATAGTG
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
86019166 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
86019206 ACTTGCAC-AATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
86019244 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
86019284 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGGA
86019317 CATCATTCGA
Statistics
Matches: 124, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 37 0.30
40 53 0.43
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:86019233 original size:78 final size:79
Alignment explanation
Indices: 86019136--86019316 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 79
86019126 GACTCGCTCA
* ** * * *
86019136 AATGCCTTCGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCGGG
1 AATGCCTTCGGGCTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCGGA
*
86019199 TTTAGTAACTT-GCAC
64 TATAGTAACTTAGCAC
* **
86019214 AATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGATA
1 AATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATA
*
86019279 TAGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
86019293 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
86019317 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
77 3 0.03
78 56 0.64
79 17 0.20
80 11 0.13
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATA
TAGTAACTTAGCAC
Found at i:86032984 original size:27 final size:27
Alignment explanation
Indices: 86032946--86033000 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
86032936 GCAAAAGAGA
86032946 AAACTTATGTATGAAAAGTCATTGGTT
1 AAACTTATGTATGAAAAGTCATTGGTT
86032973 AAACTTATGTATGAAAAGTCATTGGTT
1 AAACTTATGTATGAAAAGTCATTGGTT
86033000 A
1 A
86033001 TGTACCTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.36
Consensus pattern (27 bp):
AAACTTATGTATGAAAAGTCATTGGTT
Found at i:86035482 original size:27 final size:27
Alignment explanation
Indices: 86035434--86035538 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
86035424 GCGAGGCTGC
* *
86035434 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
86035461 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
86035487 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
86035514 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
86035539 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 7 0.10
27 57 0.85
28 3 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:86037172 original size:26 final size:26
Alignment explanation
Indices: 86037137--86037192 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
86037127 TGAAATGCCC
*
86037137 ATCATGGAACATTTACCTAAACCATT
1 ATCATAGAACATTTACCTAAACCATT
*
86037163 ATCATAGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAACCATT
86037189 ATCA
1 ATCA
86037193 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATAGAACATTTACCTAAACCATT
Found at i:86037986 original size:19 final size:19
Alignment explanation
Indices: 86037962--86037999 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
86037952 GAAATGAATA
*
86037962 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
86037981 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
86038000 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:86038275 original size:2 final size:2
Alignment explanation
Indices: 86038268--86038305 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
86038258 GTAGCTAAAT
86038268 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86038306 CAGATAATAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86039176 original size:9 final size:8
Alignment explanation
Indices: 86039149--86039190 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
86039139 AGAGGTTAGG
86039149 TTTTTTT-
1 TTTTTTTA
* *
86039156 TTTCTTCA
1 TTTTTTTA
86039164 TTTTTTTA
1 TTTTTTTA
86039172 TTTTTTTA
1 TTTTTTTA
86039180 -TTTTTTA
1 TTTTTTTA
86039187 TTTT
1 TTTT
86039191 GGGTTGTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 12 0.41
8 17 0.59
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTTTA
Found at i:86044055 original size:28 final size:28
Alignment explanation
Indices: 86044015--86044071 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
86044005 TGTAATAGAA
86044015 TATTGTGTACTCTTTTTCCTTCATTAGG
1 TATTGTGTACTCTTTTTCCTTCATTAGG
86044043 TATTGTGTACTCTTTTTCCTTCATTAGG
1 TATTGTGTACTCTTTTTCCTTCATTAGG
86044071 T
1 T
86044072 TTTTTATCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.14, T:0.54
Consensus pattern (28 bp):
TATTGTGTACTCTTTTTCCTTCATTAGG
Found at i:86044665 original size:3 final size:3
Alignment explanation
Indices: 86044657--86044698 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
86044647 ACCAAGTGTT
86044657 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
86044699 AGTTAGGCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:86045798 original size:10 final size:9
Alignment explanation
Indices: 86045738--86045798 Score: 56
Period size: 10 Copynumber: 6.6 Consensus size: 9
86045728 AAGAATATAA
86045738 AAAAATTAGT
1 AAAAATTA-T
86045748 AAAAA-TATT
1 AAAAATTA-T
86045757 AAAAA-TAT
1 AAAAATTAT
86045765 AAAAACTTAT
1 AAAAA-TTAT
86045775 AAAAACTTAT
1 AAAAA-TTAT
86045785 -AAAATTATT
1 AAAAATTA-T
86045794 AAAAA
1 AAAAA
86045799 AATCATTTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
8 9 0.20
9 15 0.33
10 22 0.48
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:86050025 original size:19 final size:18
Alignment explanation
Indices: 86049982--86050025 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
86049972 GCATTAGAAC
86049982 TTTTTATTTTATTTTATA
1 TTTTTATTTTATTTTATA
* *
86050000 TACTTTATTTTGTTTTATA
1 T-TTTTATTTTATTTTATA
86050019 GTTTTTA
1 -TTTTTA
86050026 ATCACTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 19 0.90
20 1 0.05
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTTTATTTTATTTTATA
Found at i:86050672 original size:17 final size:17
Alignment explanation
Indices: 86050642--86050686 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
86050632 ACAAAAATAG
* *
86050642 AATTTAGTTGAGAAATT
1 AATTTAATTAAGAAATT
*
86050659 TATTTAATTAAGAAATT
1 AATTTAATTAAGAAATT
*
86050676 AATTTAGTTAA
1 AATTTAATTAA
86050687 TTTAATTAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (17 bp):
AATTTAATTAAGAAATT
Found at i:86050686 original size:9 final size:9
Alignment explanation
Indices: 86050672--86050706 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
86050662 TTAATTAAGA
86050672 AATTAATTT
1 AATTAATTT
*
86050681 AGTTAATTT
1 AATTAATTT
*
86050690 AATTAATTA
1 AATTAATTT
86050699 AATTAATT
1 AATTAATT
86050707 GATAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (9 bp):
AATTAATTT
Found at i:86051814 original size:2 final size:2
Alignment explanation
Indices: 86051807--86051831 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86051797 AACCAGTTTC
86051807 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
86051832 CTTTGTCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86052687 original size:100 final size:100
Alignment explanation
Indices: 86052566--86052766 Score: 251
Period size: 100 Copynumber: 2.0 Consensus size: 100
86052556 TTTGGTCGAT
* * *
86052566 TATAGAAAATCAAATATAATATCACATATGTGCATAACTAT-ATGGCCGAATATGCAAGATCAAA
1 TATACAAAATCAAATATAATATCACATATGTGCATAACT-TCATGGCAGAATATGCAAAATCAAA
* ** * *
86052630 TTTAACATTAAATATGTACTTACTTATATGGCTGAA
65 TATAACACCAAATATGTACATACTTATATGGCCGAA
* * * * *
86052666 TATACAAATTCAAATATAATATCACATTTGTGCATACCTTCATGGCAGAATATTCAAAATCCAAT
1 TATACAAAATCAAATATAATATCACATATGTGCATAACTTCATGGCAGAATATGCAAAATCAAAT
* *
86052731 ATAACACCACATATGTACATACTTATGTGGCCGAA
66 ATAACACCAAATATGTACATACTTATATGGCCGAA
86052766 T
1 T
86052767 TTATGCAAGG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
99 1 0.01
100 84 0.99
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.31
Consensus pattern (100 bp):
TATACAAAATCAAATATAATATCACATATGTGCATAACTTCATGGCAGAATATGCAAAATCAAAT
ATAACACCAAATATGTACATACTTATATGGCCGAA
Found at i:86052711 original size:50 final size:49
Alignment explanation
Indices: 86052566--86052757 Score: 170
Period size: 50 Copynumber: 3.9 Consensus size: 49
86052556 TTTGGTCGAT
* * * * *
86052566 TATAGAAAATCAAATATAATATCACATATGTGCATAACTATATGGCCGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCT-TATGGCAGAA
* * * * * * * *
86052616 TATGCAAGATCAAATTTAACATTAAATATGTACTTACTTATATGGCTGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCT-TATGGCAGAA
* * * *
86052666 TATACAAATTCAAATATAATATCACATTTGTGCATACCTTCATGGCAGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTT-ATGGCAGAA
* * *
86052716 TATTCAAAATCCAATATAACACCACATATGTACATA-CTTATG
1 TATACAAAATCAAATATAACATCACATATGTACATACCTTATG
86052758 TGGCCGAATT
Statistics
Matches: 110, Mismatches: 31, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
48 3 0.03
49 4 0.04
50 103 0.94
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (49 bp):
TATACAAAATCAAATATAACATCACATATGTACATACCTTATGGCAGAA
Found at i:86059669 original size:2 final size:2
Alignment explanation
Indices: 86059662--86059688 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86059652 AACCAGTTTC
86059662 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
86059689 CTTTGTCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86060545 original size:100 final size:100
Alignment explanation
Indices: 86060433--86060626 Score: 246
Period size: 100 Copynumber: 1.9 Consensus size: 100
86060423 TATAGAAAAG
* * * **
86060433 CAAATATAATATCACATATGTGCATAACTAT-ATGGCCGGATATGCAAGATCAAATTTAACATTA
1 CAAATATAATATCACATATGTGCATAACT-TCATGGCCGAATATGCAAAATCAAATATAACACCA
* * *
86060497 AATATGTACTTACTTATATGGCCGAATATACAAATT
65 AATAGGTACATACCTATATGGCCGAATATACAAATT
* * * * *
86060533 CAAATATAATATCACATTTGTGCATACCTTCATGGCCGAATATTCAAAATCCAATATAACACCAC
1 CAAATATAATATCACATATGTGCATAACTTCATGGCCGAATATGCAAAATCAAATATAACACCAA
*
86060598 ATAGGTACATACCTATGTGGCCGAATATA
66 ATAGGTACATACCTATATGGCCGAATATA
86060627 TGCAAGGTCA
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
99 1 0.01
100 78 0.99
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (100 bp):
CAAATATAATATCACATATGTGCATAACTTCATGGCCGAATATGCAAAATCAAATATAACACCAA
ATAGGTACATACCTATATGGCCGAATATACAAATT
Found at i:86060568 original size:50 final size:49
Alignment explanation
Indices: 86060433--86060626 Score: 183
Period size: 50 Copynumber: 3.9 Consensus size: 49
86060423 TATAGAAAAG
* * * * *
86060433 CAAATATAATATCACATATGTGCATAACTATATGGCCGGATATGCAAGAT
1 CAAATATAACATCACATATGTACATACCTATATGGCCGAATATACAA-AT
* * * * *
86060483 CAAATTTAACATTAAATATGTACTTACTTATATGGCCGAATATACAAATT
1 CAAATATAACATCACATATGTACATACCTATATGGCCGAATATACAAA-T
* * * *
86060533 CAAATATAATATCACATTTGTGCATACCT-TCATGGCCGAATATTCAAAAT
1 CAAATATAACATCACATATGTACATACCTAT-ATGGCCGAATATAC-AAAT
* * * *
86060583 CCAATATAACACCACATAGGTACATACCTATGTGGCCGAATATA
1 CAAATATAACATCACATATGTACATACCTATATGGCCGAATATA
86060627 TGCAAGGTCA
Statistics
Matches: 113, Mismatches: 27, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
49 2 0.02
50 107 0.95
51 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (49 bp):
CAAATATAACATCACATATGTACATACCTATATGGCCGAATATACAAAT
Found at i:86063942 original size:16 final size:17
Alignment explanation
Indices: 86063916--86063948 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
86063906 TGTTGTAACG
*
86063916 CCCCAAAAATCTCGAAA
1 CCCCAAAAATCCCGAAA
86063933 CCCC-AAAATCCCGAAA
1 CCCCAAAAATCCCGAAA
86063949 TCCTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.39, G:0.06, T:0.09
Consensus pattern (17 bp):
CCCCAAAAATCCCGAAA
Found at i:86065494 original size:29 final size:28
Alignment explanation
Indices: 86065438--86065550 Score: 120
Period size: 29 Copynumber: 4.0 Consensus size: 28
86065428 GTGAGTATAA
* * **
86065438 ATATGAATGTGACTGGGCCTAACAGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
86065466 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
*
86065495 ATATACAA-GTGATTTGGGCCTAATGGGTC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* * *
86065524 ATATGAATATGATTGGGCTTAATGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
86065551 TAGATACAGG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.36
29 45 0.62
30 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:86069112 original size:41 final size:41
Alignment explanation
Indices: 86069067--86069145 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
86069057 ATGATATTTG
86069067 TTATTGATTGTTCTGAATTGTGCGGTAATACTCCATAACCC
1 TTATTGATTGTTCTGAATTGTGCGGTAATACTCCATAACCC
* *
86069108 TTATTGATTGTTCTGAATTGTGCGGTGATACTCTATAA
1 TTATTGATTGTTCTGAATTGTGCGGTAATACTCCATAA
86069146 TCCTAACGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (41 bp):
TTATTGATTGTTCTGAATTGTGCGGTAATACTCCATAACCC
Found at i:86069616 original size:67 final size:67
Alignment explanation
Indices: 86069475--86069619 Score: 166
Period size: 67 Copynumber: 2.2 Consensus size: 67
86069465 GGCCACATAG
* * * * ** * * *
86069475 CCGTGTTCCAGCCCGTGTTTTCACTTGTGTAACTCTCTGAGTTGGGTCACTCGGCGAAGCCATAG
1 CCGTGTCCCAGCCCGTATTCTCACTCGTGTAACTCTCTGAGTTGGACCACTCGGCCAAGCCACAC
86069540 GC
66 GC
* * *
86069542 CCATGTCCCAGCTCGTATTCTCACTCGTGTAACTCTCTGAGTTGGACCACAT-GGCCAAGCTACA
1 CCGTGTCCCAGCCCGTATTCTCACTCGTGTAACTCTCTGAGTTGGACCAC-TCGGCCAAGCCACA
86069606 CGC
65 CGC
86069609 CCGTGTCCCAG
1 CCGTGTCCCAG
86069620 GCTATGTAAC
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
67 63 0.98
68 1 0.02
ACGTcount: A:0.17, C:0.32, G:0.23, T:0.27
Consensus pattern (67 bp):
CCGTGTCCCAGCCCGTATTCTCACTCGTGTAACTCTCTGAGTTGGACCACTCGGCCAAGCCACAC
GC
Found at i:86070543 original size:41 final size:41
Alignment explanation
Indices: 86070454--86070650 Score: 173
Period size: 41 Copynumber: 4.8 Consensus size: 41
86070444 AGGGGTACTA
* * * * * * *
86070454 AAGTACAAATAGGGGCACATCTATGCAATTCA-GTGTTACCA
1 AAGTACAAACAGGGGCACGTATGTGCAATTCATG-GGTATCG
* *
86070495 AAATACAAACAGGGGCACGTATGTGTAATTCATGGGTATCG
1 AAGTACAAACAGGGGCACGTATGTGCAATTCATGGGTATCG
* ** * *
86070536 AAGTACAAAAAAAGGCACGTATGTGCAATT-AAGGGATATTG
1 AAGTACAAACAGGGGCACGTATGTGCAATTCATGGG-TATCG
*** * * * *
86070577 AAGTATGGACAGGGGCATGTATGTGCAACTCAGGGGTACCG
1 AAGTACAAACAGGGGCACGTATGTGCAATTCATGGGTATCG
86070618 AAGTACAAACAGGGGCACGTATGTGCAATTCAT
1 AAGTACAAACAGGGGCACGTATGTGCAATTCAT
86070651 CGTTATATTT
Statistics
Matches: 120, Mismatches: 33, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
40 4 0.03
41 111 0.93
42 5 0.04
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (41 bp):
AAGTACAAACAGGGGCACGTATGTGCAATTCATGGGTATCG
Found at i:86072840 original size:23 final size:23
Alignment explanation
Indices: 86072814--86072882 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 23
86072804 TAGATGGCAT
*
86072814 TCTATTTGGCCTTTGTGGTGTAC
1 TCTATTTGGCCTTTGTGGTATAC
* * *
86072837 TCTA-ATAGCCTTTGTGGTATAT
1 TCTATTTGGCCTTTGTGGTATAC
* *
86072859 TCTATTTGGCCCTTGTGGCATAC
1 TCTATTTGGCCTTTGTGGTATAC
86072882 T
1 T
86072883 TTGATAAGCC
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.14, C:0.19, G:0.22, T:0.45
Consensus pattern (23 bp):
TCTATTTGGCCTTTGTGGTATAC
Found at i:86076085 original size:28 final size:28
Alignment explanation
Indices: 86076045--86076100 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
86076035 TTGACCGAAA
86076045 GATTGTTTAATTTTCACAACATCGCAGT
1 GATTGTTTAATTTTCACAACATCGCAGT
*
86076073 GATTGTTTAATTTTCGCAACATCGCAGT
1 GATTGTTTAATTTTCACAACATCGCAGT
86076101 TAGCGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (28 bp):
GATTGTTTAATTTTCACAACATCGCAGT
Found at i:86079826 original size:9 final size:9
Alignment explanation
Indices: 86079812--86079842 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
86079802 TAAACGAATA
86079812 GAGTTATTC
1 GAGTTATTC
*
86079821 GAGTTAATC
1 GAGTTATTC
86079830 GAGTTATTC
1 GAGTTATTC
86079839 GAGT
1 GAGT
86079843 CAACTCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (9 bp):
GAGTTATTC
Found at i:86079911 original size:9 final size:9
Alignment explanation
Indices: 86079894--86079930 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
86079884 TGAGTTTTCG
86079894 AATTCGAAT
1 AATTCGAAT
*
86079903 AACTCGAAT
1 AATTCGAAT
*
86079912 AGTTCGAAT
1 AATTCGAAT
86079921 AATTCGAAT
1 AATTCGAAT
86079930 A
1 A
86079931 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:86080855 original size:5 final size:5
Alignment explanation
Indices: 86080845--86080870 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
86080835 GAACAAATAT
86080845 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
86080871 ATTTCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:86080970 original size:5 final size:5
Alignment explanation
Indices: 86080960--86080991 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
86080950 CTCGAAAATT
86080960 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA TT
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA TT
86080992 GAATGCTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (5 bp):
TTCGA
Found at i:86084399 original size:28 final size:28
Alignment explanation
Indices: 86084359--86084414 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
86084349 TTTTTGTGGT
*
86084359 TTGAAGAGATTAATTAAAGAAAAATATA
1 TTGAAGAGATTAATAAAAGAAAAATATA
*
86084387 TTGAAGAGATTAATAAAAGTAAAATATA
1 TTGAAGAGATTAATAAAAGAAAAATATA
86084415 CTTTAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (28 bp):
TTGAAGAGATTAATAAAAGAAAAATATA
Found at i:86085961 original size:60 final size:60
Alignment explanation
Indices: 86085889--86086007 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
86085879 CGGCCATATT
*
86085889 TGGGGTCACACAAGCTTGTCTCTATCACACGGCCATGTAACCCCTGTTGACACTTTTTAA
1 TGGGGTCACACAAGCTTGTCTCTATCAAACGGCCATGTAACCCCTGTTGACACTTTTTAA
*
86085949 TGGGGTCACACAAGCTTGTCTCTGTCAAACGGCCATGTAACCCCTGTTGACACTTTTTA
1 TGGGGTCACACAAGCTTGTCTCTATCAAACGGCCATGTAACCCCTGTTGACACTTTTTA
86086008 CTCAAAATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (60 bp):
TGGGGTCACACAAGCTTGTCTCTATCAAACGGCCATGTAACCCCTGTTGACACTTTTTAA
Found at i:86087285 original size:75 final size:75
Alignment explanation
Indices: 86087192--86087698 Score: 376
Period size: 75 Copynumber: 6.7 Consensus size: 75
86087182 AGAGTTTGTC
* * * * * *
86087192 GATTTACGATCACAACCTTTGGCTTTCTAACAGTTCGTTAATTTATGATTACGATTATCATTTTT
1 GATTTACGATCACGACCTTTGGTTTTCTAACAGTTCGCTAATTTACGATCACGACTATCATTTTT
*
86087257 ACGGTCTGTT
66 ACGGTCTATT
* * * * * * * * * * *
86087267 GAGTTACAATCACGACCTTCGATTTTCTAACAGTTTGCTGATTTACAATTATGAATGTCATTTTT
1 GATTTACGATCACGACCTTTGGTTTTCTAACAGTTCGCTAATTTACGATCACGACTATCATTTTT
*
86087332 ATGGTCTATT
66 ACGGTCTATT
* * * * * *
86087342 GATTTATGATCACGACCTTTGG-CTTCTTAACAGTTCGTTGATTTAGGATCACGAC-AGTTATTT
1 GATTTACGATCACGACCTTTGGTTTTC-TAACAGTTCGCTAATTTACGATCACGACTA-TCATTT
* ***
86087405 TTACAGTCCGCT
64 TTACGGTCTATT
* * * *
86087417 GATTTACAATCACGACCTTCGATTTTCTAACAGTTCGCTGATTTACGATCACGACTATCATTTTT
1 GATTTACGATCACGACCTTTGGTTTTCTAACAGTTCGCTAATTTACGATCACGACTATCATTTTT
86087482 ACGGT-TCATT
66 ACGGTCT-ATT
* * * * * * * **
86087492 GATTTATGATCATGACCTTAGATTTTCTAACAGTTCACACTAATTTATGATAACGACTGGCATTT
1 GATTTACGATCACGACCTTTGGTTTTCTAACAGTT--CGCTAATTTACGATCACGACTATCATTT
* *
86087557 TTACTGTCCGA-T
64 TTACGGT-CTATT
*** * * * * * *
86087569 GATTTTTTATCACGACCTTTAGTTTTCTAGCAGTTCGCTAATTTATGATCATGACTGTTATTTTT
1 GATTTACGATCACGACCTTTGGTTTTCTAACAGTTCGCTAATTTACGATCACGACTATCATTTTT
* *
86087634 ACGAT-TCACT
66 ACGGTCT-ATT
* * * * *
86087644 GATTTACGATCATGACCTTTGGCTTTCTAACAGTTCACTAATTTACAATTACGAC
1 GATTTACGATCACGACCTTTGGTTTTCTAACAGTTCGCTAATTTACGATCACGAC
86087699 CTTTTACTCA
Statistics
Matches: 334, Mismatches: 87, Indels: 22
0.75 0.20 0.05
Matches are distributed among these distances:
74 4 0.01
75 268 0.80
76 4 0.01
77 57 0.17
78 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (75 bp):
GATTTACGATCACGACCTTTGGTTTTCTAACAGTTCGCTAATTTACGATCACGACTATCATTTTT
ACGGTCTATT
Found at i:86087313 original size:39 final size:39
Alignment explanation
Indices: 86087270--86087527 Score: 148
Period size: 39 Copynumber: 6.8 Consensus size: 39
86087260 GTCTGTTGAG
* *
86087270 TTACAATCACGACCTTCGATTTTCTAACAGTTTGCTGAT
1 TTACGATCACGACCTTCGATTTTCTAACAGTTCGCTGAT
* * * * * * **
86087309 TTACAATTATGA-ATGTC-ATTTT-T-A-TGGTCTATTGAT
1 TTACGATCACGACCT-TCGATTTTCTAACAGTTCGCT-GAT
* * ** *
86087345 TTATGATCACGACCTTTG-GCTTCTTAACAGTTCGTTGAT
1 TTACGATCACGACCTTCGATTTTC-TAACAGTTCGCTGAT
* * *
86087384 TTAGGATCACGACAGTT--ATTTT-T-ACAGTCCGCTGAT
1 TTACGATCACGAC-CTTCGATTTTCTAACAGTTCGCTGAT
*
86087420 TTACAATCACGACCTTCGATTTTCTAACAGTTCGCTGAT
1 TTACGATCACGACCTTCGATTTTCTAACAGTTCGCTGAT
* **
86087459 TTACGATCACGA-CTATC-ATTTT-T-ACGGTTCATTGAT
1 TTACGATCACGACCT-TCGATTTTCTAACAGTTCGCTGAT
* * *
86087495 TTATGATCATGACCTTAGATTTTCTAACAGTTC
1 TTACGATCACGACCTTCGATTTTCTAACAGTTC
86087528 ACACTAATTT
Statistics
Matches: 162, Mismatches: 38, Indels: 38
0.68 0.16 0.16
Matches are distributed among these distances:
35 5 0.03
36 58 0.36
37 16 0.10
38 16 0.10
39 61 0.38
40 6 0.04
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (39 bp):
TTACGATCACGACCTTCGATTTTCTAACAGTTCGCTGAT
Found at i:86087420 original size:36 final size:38
Alignment explanation
Indices: 86087341--86087701 Score: 145
Period size: 39 Copynumber: 9.5 Consensus size: 38
86087331 TATGGTCTAT
* **** *
86087341 TGATTTATGATCACGACCTTTGGCTTCTTAACAGTTCGT
1 TGATTTACGATCACGACCTTCATTTTC-TAACAGTTCGC
* * *
86087380 TGATTTAGGATCACGACAGTT-ATTTT-T-ACAGTCCGC
1 TGATTTACGATCACGAC-CTTCATTTTCTAACAGTTCGC
*
86087416 TGATTTACAATCACGACCTTCGATTTTCTAACAGTTCGC
1 TGATTTACGATCACGACCTTC-ATTTTCTAACAGTTCGC
* **
86087455 TGATTTACGATCACGA-CTATCATTTT-T-ACGGTTCAT
1 TGATTTACGATCACGACCT-TCATTTTCTAACAGTTCGC
* * * *
86087491 TGATTTATGATCATGACCTTAGATTTTCTAACAGTTCACAC
1 TGATTTACGATCACGACCTT-CATTTTCTAACAGTT--CGC
* * * * * * *
86087532 TAATTTATGATAACGA-CTGGCATTTT-T-ACTGTCCGA
1 TGATTTACGATCACGACCT-TCATTTTCTAACAGTTCGC
*** * *
86087568 TGATTTTTTATCACGACCTTTAGTTTTCTAGCAGTTCGC
1 TGATTTACGATCACGACCTTCA-TTTTCTAACAGTTCGC
* * * * *
86087607 TAATTTATGATCATGA-CTGTTATTTT-T-AC-GATTCAC
1 TGATTTACGATCACGACCT-TCATTTTCTAACAG-TTCGC
* *** *
86087643 TGATTTACGATCATGACCTTTGGCTTTCTAACAGTTCAC
1 TGATTTACGATCACGACC-TTCATTTTCTAACAGTTCGC
* * *
86087682 TAATTTACAATTACGACCTT
1 TGATTTACGATCACGACCTT
86087702 TTACTCACGG
Statistics
Matches: 244, Mismatches: 54, Indels: 49
0.70 0.16 0.14
Matches are distributed among these distances:
35 3 0.01
36 76 0.31
37 26 0.11
38 24 0.10
39 90 0.37
40 10 0.04
41 15 0.06
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.40
Consensus pattern (38 bp):
TGATTTACGATCACGACCTTCATTTTCTAACAGTTCGC
Found at i:86087603 original size:152 final size:149
Alignment explanation
Indices: 86087192--86087688 Score: 480
Period size: 150 Copynumber: 3.3 Consensus size: 149
86087182 AGAGTTTGTC
* ** ** * * * *
86087192 GATTTACGATCACAACCTTTGGCTTTCTAACAGTTCGTTAATTTATGATTACGATTA-TCATTTT
1 GATTTATGATCATGACCTTT-GCTTTCTAACAGTTCACTAATTTAGGATAACGA-CAGGCATTTT
* * * * * * *
86087256 TACGGTCTGTTGAGTTACAATCACGACCTTCGATTTTCTAACAGTTTGCTGATTTACAATTATGA
64 TACAGTCCGATGATTTACAATCACGACCTTCGATTTTCTAACAGTTCGCTGATTTACGATCATGA
* *
86087321 ATGTCATTTTTATGG-TCTATT
129 CTGTCATTTTTACGGTTC-ATT
* ** * * **
86087342 GATTTATGATCACGACCTTTGGC-TTCTTAACAGTTCGTTGATTTAGGATCACGACAGTTATTTT
1 GATTTATGATCATGACCTTT-GCTTTC-TAACAGTTCACTAATTTAGGATAACGACAGGCATTTT
* *
86087406 TACAGTCCGCTGATTTACAATCACGACCTTCGATTTTCTAACAGTTCGCTGATTTACGATCACGA
64 TACAGTCCGATGATTTACAATCACGACCTTCGATTTTCTAACAGTTCGCTGATTTACGATCATGA
*
86087471 CTATCATTTTTACGGTTCATT
129 CTGTCATTTTTACGGTTCATT
* * * *
86087492 GATTTATGATCATGACCTTAGATTTTCTAACAGTTCACACTAATTTATGATAACGACTGGCATTT
1 GATTTATGATCATGACCTTTG-CTTTCTAACAGTT--CACTAATTTAGGATAACGACAGGCATTT
* *** * * * *
86087557 TTACTGTCCGATGATTTTTTATCACGACCTT-TAGTTTTCTAGCAGTTCGCTAATTTATGATCAT
63 TTACAGTCCGATGATTTACAATCACGACCTTCGA-TTTTCTAACAGTTCGCTGATTTACGATCAT
* * *
86087621 GACTGTTATTTTTACGATTCACT
127 GACTGTCATTTTTACGGTTCATT
*
86087644 GATTTACGATCATGACCTTTGGCTTTCTAACAGTTCACTAATTTA
1 GATTTATGATCATGACCTTT-GCTTTCTAACAGTTCACTAATTTA
86087689 CAATTACGAC
Statistics
Matches: 292, Mismatches: 46, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
149 5 0.02
150 159 0.54
151 6 0.02
152 121 0.41
153 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (149 bp):
GATTTATGATCATGACCTTTGCTTTCTAACAGTTCACTAATTTAGGATAACGACAGGCATTTTTA
CAGTCCGATGATTTACAATCACGACCTTCGATTTTCTAACAGTTCGCTGATTTACGATCATGACT
GTCATTTTTACGGTTCATT
Found at i:86087828 original size:23 final size:23
Alignment explanation
Indices: 86087755--86087837 Score: 62
Period size: 23 Copynumber: 3.5 Consensus size: 23
86087745 ATTTGCGGTA
*
86087755 TTCTACAATGCA-TTTCGTAGCAT
1 TTCTACAATACAGTTT-GTAGCAT
* * * *
86087778 TTCAATA-AATACAGTTCGCAGTAA
1 TTC--TACAATACAGTTTGTAGCAT
86087802 TTCTACAATACAGTTTGTAGCAT
1 TTCTACAATACAGTTTGTAGCAT
*
86087825 TTCTGCAAATACA
1 TTCTAC-AATACA
86087838 ACTTGCATAA
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
22 2 0.04
23 21 0.47
24 18 0.40
25 4 0.09
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (23 bp):
TTCTACAATACAGTTTGTAGCAT
Found at i:86087835 original size:47 final size:46
Alignment explanation
Indices: 86087754--86087855 Score: 118
Period size: 47 Copynumber: 2.2 Consensus size: 46
86087744 AATTTGCGGT
* * *
86087754 ATTCTACAATGCATTTCGTAGCATTTCAATAAATAC-AGTTCGCAGTA
1 ATTCTACAATACATTTCGTAGCATTTCAACAAATACAACTT-GCA-TA
**
86087801 ATTCTACAATACAGTTT-GTAGCATTTCTGCAAATACAACTTGCATA
1 ATTCTACAATACA-TTTCGTAGCATTTCAACAAATACAACTTGCATA
86087847 ATTCTACAA
1 ATTCTACAA
86087856 CATGATTTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
46 11 0.23
47 31 0.65
48 6 0.12
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (46 bp):
ATTCTACAATACATTTCGTAGCATTTCAACAAATACAACTTGCATA
Found at i:86090980 original size:7 final size:7
Alignment explanation
Indices: 86090968--86091091 Score: 131
Period size: 7 Copynumber: 17.4 Consensus size: 7
86090958 AAATTTCCCC
86090968 AAACCCT
1 AAACCCT
86090975 AAACCCT
1 AAACCCT
*
86090982 AAACCTT
1 AAACCCT
*
86090989 AAACCAT
1 AAACCCT
*
86090996 AAACCAT
1 AAACCCT
86091003 AAAACCCT
1 -AAACCCT
86091011 AAACCCT
1 AAACCCT
* *
86091018 AAGCCTT
1 AAACCCT
*
86091025 AAGCCCT
1 AAACCCT
86091032 AAACCCT
1 AAACCCT
*
86091039 AAAACCAT
1 -AAACCCT
**
86091047 AAACTTT
1 AAACCCT
86091054 AAACCCT
1 AAACCCT
*
86091061 AAATCCT
1 AAACCCT
*
86091068 AAACCAT
1 AAACCCT
86091075 AAACCCT
1 AAACCCT
86091082 AAACCCT
1 AAACCCT
86091089 AAA
1 AAA
86091092 ACCAATCGCC
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
7 87 0.88
8 12 0.12
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:86091058 original size:50 final size:51
Alignment explanation
Indices: 86090968--86091095 Score: 170
Period size: 50 Copynumber: 2.5 Consensus size: 51
86090958 AAATTTCCCC
* *
86090968 AAACCCTAAACCCTAAA-CCTTAAACCATAAACCATAAAACCCTAAACCCT
1 AAACCATAAACCCTAAACCCTAAAACCATAAACCATAAAACCCTAAACCCT
* * * * * *
86091018 AAGCCTTAAGCCCTAAACCCTAAAACCATAAA-CTTTAAACCCTAAATCCT
1 AAACCATAAACCCTAAACCCTAAAACCATAAACCATAAAACCCTAAACCCT
86091068 AAACCATAAACCCTAAACCCTAAAACCA
1 AAACCATAAACCCTAAACCCTAAAACCA
86091096 ATCGCCCTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
50 54 0.81
51 13 0.19
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.17
Consensus pattern (51 bp):
AAACCATAAACCCTAAACCCTAAAACCATAAACCATAAAACCCTAAACCCT
Found at i:86091094 original size:36 final size:35
Alignment explanation
Indices: 86090968--86091091 Score: 151
Period size: 36 Copynumber: 3.5 Consensus size: 35
86090958 AAATTTCCCC
86090968 AAACCCTAAACCCTAAACCTTAAACCATAAACCATA
1 AAACCCTAAACCCTAAACCTTAAACC-TAAACCATA
* * *
86091004 AAACCCTAAACCCTAAGCCTTAAGCCCTAAACCCTA
1 AAACCCTAAACCCTAAACCTTAA-ACCTAAACCATA
* ** *
86091040 AAACCATAAACTTTAAACCCTAAATCCTAAACCAT-
1 AAACCCTAAACCCTAAACCTTAAA-CCTAAACCATA
86091075 AAACCCTAAACCCTAAA
1 AAACCCTAAACCCTAAA
86091092 ACCAATCGCC
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
35 14 0.19
36 57 0.78
37 2 0.03
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.18
Consensus pattern (35 bp):
AAACCCTAAACCCTAAACCTTAAACCTAAACCATA
Found at i:86097657 original size:10 final size:10
Alignment explanation
Indices: 86097623--86097661 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
86097613 CTTAACCAGT
86097623 TCAAAACATG
1 TCAAAACATG
86097633 ATCAAATACAT-
1 -TCAAA-ACATG
86097644 TCAAAACATG
1 TCAAAACATG
86097654 TCAAAACA
1 TCAAAACA
86097662 ATTATCCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 4 0.15
10 13 0.50
11 5 0.19
12 4 0.15
ACGTcount: A:0.54, C:0.21, G:0.05, T:0.21
Consensus pattern (10 bp):
TCAAAACATG
Found at i:86097791 original size:137 final size:137
Alignment explanation
Indices: 86097609--86097868 Score: 475
Period size: 137 Copynumber: 1.9 Consensus size: 137
86097599 TCAAAAACCA
*
86097609 TTTGCTTAACCAGTTCAAAACATGATCAAATACATTCAAAACATGTCAAAACAATTATCCTAGGT
1 TTTGCTTAACCAGTTCAAAACACGATCAAATACATTCAAAACATGTCAAAACAATTATCCTAGGT
*
86097674 GCCTAACCAATGTACGCTCAATGGTACCACATTTATATCATCTATTCATATCATCAAATAACTTA
66 GCCTAACCAATGTACGCTCAATGGTACCACAATTATATCATCTATTCATATCATCAAATAACTTA
86097739 AAAACTG
131 AAAACTG
*
86097746 TTTGTTTAACCAGTTCAAAACACGATCAAATACATTCAAAACATGTCAAAACAATTATCCTAGGT
1 TTTGCTTAACCAGTTCAAAACACGATCAAATACATTCAAAACATGTCAAAACAATTATCCTAGGT
* *
86097811 GCCTAACCAATGTATGCTCATTGGTACCACAATTATATCATCTATTCATATCATCAAA
66 GCCTAACCAATGTACGCTCAATGGTACCACAATTATATCATCTATTCATATCATCAAA
86097869 GCATCATTCA
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 118 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (137 bp):
TTTGCTTAACCAGTTCAAAACACGATCAAATACATTCAAAACATGTCAAAACAATTATCCTAGGT
GCCTAACCAATGTACGCTCAATGGTACCACAATTATATCATCTATTCATATCATCAAATAACTTA
AAAACTG
Found at i:86098500 original size:28 final size:25
Alignment explanation
Indices: 86098464--86098530 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 25
86098454 ACAATGGCAC
*
86098464 TATCTATTCCATATTT-AATTCAACATA
1 TATCAATTCCAT-TTTCAATTC-AC-TA
*
86098491 TTTCACATTCCATTTTCAATTCACTA
1 TATCA-ATTCCATTTTCAATTCACTA
86098517 TATCAATTCCATTT
1 TATCAATTCCATTT
86098531 CTCATACCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 9 0.26
26 6 0.17
27 8 0.23
28 12 0.34
ACGTcount: A:0.31, C:0.22, G:0.00, T:0.46
Consensus pattern (25 bp):
TATCAATTCCATTTTCAATTCACTA
Found at i:86099714 original size:14 final size:13
Alignment explanation
Indices: 86099695--86099725 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
86099685 TTTTTTCCCT
86099695 TTTCTTTCTATTTC
1 TTTCTTTCT-TTTC
86099709 TTTCTTTCTTTTC
1 TTTCTTTCTTTTC
86099722 TTTC
1 TTTC
86099726 AAATTTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTCTTTCTTTTC
Found at i:86099839 original size:2 final size:2
Alignment explanation
Indices: 86099828--86099856 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
86099818 TTTTAATTAT
86099828 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86099857 ATAAATTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:86104311 original size:34 final size:34
Alignment explanation
Indices: 86104263--86104328 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
86104253 CTGCATCCGT
*
86104263 ACATAAGACCATAGCAAGGCTATGACAATTATAA
1 ACATAAGACAATAGCAAGGCTATGACAATTATAA
86104297 ACATAAGACAATAGCAAGGCTATGACAATTAT
1 ACATAAGACAATAGCAAGGCTATGACAATTAT
86104329 TCAGATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (34 bp):
ACATAAGACAATAGCAAGGCTATGACAATTATAA
Found at i:86104390 original size:69 final size:69
Alignment explanation
Indices: 86104292--86104425 Score: 169
Period size: 69 Copynumber: 1.9 Consensus size: 69
86104282 CTATGACAAT
* * *
86104292 TATAAACATAAGACAATAGCAAGGCTATGACAATTATTCAGATATAAGATCATTGTTGGACCATG
1 TATAAACATAAGACAATAGCAAGGCTATGACAATTATTCAGACATAAGACCATGGTTGGACCATG
86104357 GCAA
66 GCAA
* * ** * * * *
86104361 TATATACATAAGACCATAGTGAGGCTATGACAGTTGTTTAGACGTAAGACCATGGTTGGACCATG
1 TATAAACATAAGACAATAGCAAGGCTATGACAATTATTCAGACATAAGACCATGGTTGGACCATG
86104426 ACAGTGTGTA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
69 54 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (69 bp):
TATAAACATAAGACAATAGCAAGGCTATGACAATTATTCAGACATAAGACCATGGTTGGACCATG
GCAA
Found at i:86107792 original size:26 final size:26
Alignment explanation
Indices: 86107756--86107865 Score: 186
Period size: 26 Copynumber: 4.2 Consensus size: 26
86107746 CATGAAATTC
86107756 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86107782 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86107808 TTATCATGGAACATTTA-CTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
86107833 TTATCATGAACACATTTACCTAACCCA
1 TTATCATGAA-ACATTTACCTAACCCA
86107860 TTATCA
1 TTATCA
86107866 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
25 16 0.21
26 49 0.63
27 13 0.17
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86113662 original size:26 final size:26
Alignment explanation
Indices: 86113593--86113701 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
86113583 CATGAAATTC
86113593 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86113619 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86113644 TTATCATGGAACATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
86113670 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86113696 TTATCA
1 TTATCA
86113702 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 25 0.32
26 54 0.68
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86113671 original size:51 final size:52
Alignment explanation
Indices: 86113593--86113701 Score: 193
Period size: 51 Copynumber: 2.1 Consensus size: 52
86113583 CATGAAATTC
86113593 TTATCATGAAACATTTACCTAACCCATTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
* *
86113644 TTATCATGGAACATTTACCTAATCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
86113696 TTATCA
1 TTATCA
86113702 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
51 32 0.58
52 23 0.42
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
Found at i:86117192 original size:40 final size:41
Alignment explanation
Indices: 86117155--86117379 Score: 297
Period size: 40 Copynumber: 5.7 Consensus size: 41
86117145 GCTACTCGTT
*
86117155 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
86117195 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86117235 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
86117275 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
86117315 CAAATGCCTTC-GG-TCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
86117355 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
86117380 CATCATTCGA
Statistics
Matches: 172, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
39 28 0.16
40 142 0.83
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:86125482 original size:40 final size:40
Alignment explanation
Indices: 86125257--86125481 Score: 355
Period size: 40 Copynumber: 5.6 Consensus size: 40
86125247 AGCCAGGTTA
* **
86125257 TAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
86125297 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
86125337 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
86125377 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
86125417 TAGTAACTCGCACAAATGCCTTCGGGTCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
86125457 TAGTCACTTAGCACAAA-GCCTTCGG
1 TAGTAAC-TCGCACAAATGCCTTCGG
86125482 GACTTAGCCC
Statistics
Matches: 176, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 3 0.02
40 165 0.94
41 8 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:86125488 original size:40 final size:40
Alignment explanation
Indices: 86125229--86125488 Score: 352
Period size: 40 Copynumber: 6.5 Consensus size: 40
86125219 GCTACTCGTT
* *
86125229 CAAATGCCTTCGGGACATAG-CCAGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGTCC-GGATT-TAGTAACTCGCA
**
86125269 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
86125309 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
86125349 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
86125389 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
* * * *
86125429 CAAATGCCTTCGGGTCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAAC-TCGCA
86125470 CAAA-GCCTTCGGGACTTAG
1 CAAATGCCTTCGGGACTTAG
86125489 CCCAGACATC
Statistics
Matches: 205, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
39 3 0.01
40 188 0.92
41 14 0.07
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:86130172 original size:20 final size:21
Alignment explanation
Indices: 86130103--86130203 Score: 161
Period size: 21 Copynumber: 4.9 Consensus size: 21
86130093 CACTTGACAT
** *
86130103 AGGGGCACATACCCATGTGAA
1 AGGGGCACACGCCCGTGTGAA
86130124 AGGGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
86130145 AGGGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
86130166 A-GGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
86130186 A-GGGCACACGCCCGTGTG
1 AGGGGCACACGCCCGTGTG
86130204 GCCAATTCAA
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
20 37 0.48
21 40 0.52
ACGTcount: A:0.25, C:0.29, G:0.36, T:0.11
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:86130183 original size:41 final size:42
Alignment explanation
Indices: 86130103--86130203 Score: 161
Period size: 41 Copynumber: 2.5 Consensus size: 42
86130093 CACTTGACAT
** *
86130103 AGGGGCACATACCCATGTGAAAGGGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAAAGGGGCACACGCCCGTGTGAA
86130145 AGGGGCACACGCCCGTGTGAAA-GGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAAAGGGGCACACGCCCGTGTGAA
86130186 A-GGGCACACGCCCGTGTG
1 AGGGGCACACGCCCGTGTG
86130204 GCCAATTCAA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 17 0.30
41 20 0.36
42 19 0.34
ACGTcount: A:0.25, C:0.29, G:0.36, T:0.11
Consensus pattern (42 bp):
AGGGGCACACGCCCGTGTGAAAGGGGCACACGCCCGTGTGAA
Found at i:86131429 original size:47 final size:46
Alignment explanation
Indices: 86131361--86131697 Score: 142
Period size: 47 Copynumber: 7.2 Consensus size: 46
86131351 CCTAGACACA
* * * *
86131361 GTCTTATACTGGCTCATATCTC-AAGTCGATGCTGTGTCCCAAACAT
1 GTCTTACACTGACTCATATCTCGAAGCCGATGC-ATGTCCCAAACAT
* *
86131407 GGTCTTACACTGACT-ATCATCTCGTAGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTGACTCAT-ATCTCGAAGCCGATGCATGTCCCAAACAT
* * * ** * * ** *
86131454 GTCTTACATTGGCTTACGTCTCGAGGTCTTTGCATGTCCCAGACAT
1 GTCTTACACTGACTCATATCTCGAAGCCGATGCATGTCCCAAACAT
* * *
86131500 GTCTTACACT-AGC-CCTCATCTC-AATACCGATGCCATGTCCCAGACAT
1 GTCTTACACTGA-CTCAT-ATCTCGAA-GCCGATG-CATGTCCCAAACAT
* * * *
86131547 GGTCTTACATTGGCTCTCATAATGT-G--GCCGATGCATGTCCCAGACAT
1 -GTCTTACACT-G-ACTCAT-ATCTCGAAGCCGATGCATGTCCCAAACAT
* * * *
86131594 GTCTTACACT-AGCCCTTGTCTC-AATGCCGATGCCATGTCCCAGACAT
1 GTCTTACACTGA-CTCATATCTCGAA-GCCGATG-CATGTCCCAAACAT
* * * *
86131641 GGTCTTACATTGGCTCTCATAATGT-G--GCCGATGCATGTCCCAGACAT
1 -GTCTTACACT-G-ACTCAT-ATCTCGAAGCCGATGCATGTCCCAAACAT
86131688 GTCTTACACT
1 GTCTTACACT
86131698 AGCTCACACA
Statistics
Matches: 220, Mismatches: 45, Indels: 51
0.70 0.14 0.16
Matches are distributed among these distances:
43 2 0.01
44 3 0.01
45 1 0.00
46 79 0.36
47 85 0.39
48 39 0.18
50 4 0.02
51 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
GTCTTACACTGACTCATATCTCGAAGCCGATGCATGTCCCAAACAT
Found at i:86131476 original size:46 final size:45
Alignment explanation
Indices: 86131395--86131695 Score: 236
Period size: 47 Copynumber: 6.4 Consensus size: 45
86131385 GTCGATGCTG
* * *
86131395 TGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCA
1 TGTCCCAGACAT-GTCTTACATTGGCT-TCATCTCGTAGCCGATGCA
* * **
86131442 TGTCCCAGACATGTCTTACATTGGCTTACGTCTCG-AGGTCTTTGCA
1 TGTCCCAGACATGTCTTACATTGGCTT-CATCTCGTA-GCCGATGCA
* * * *
86131488 TGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATA-CCGATGCCA
1 TGTCCCAGACATGTCTTACA-TTGGCTTCATCTC-GTAGCCGATG-CA
* *
86131535 TGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACATTGGCT-TCAT-CTCGTAGCCGATGCA
* * * *
86131582 TGTCCCAGACATGTCTTACACTAGCCCTT-GTCTC-AATGCCGATGCCA
1 TGTCCCAGACATGTCTTACA-TTG-GCTTCATCTCGTA-GCCGATG-CA
* *
86131629 TGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACATTGGCT-TCAT-CTCGTAGCCGATGCA
86131676 TGTCCCAGACATGTCTTACA
1 TGTCCCAGACATGTCTTACA
86131696 CTAGCTCACA
Statistics
Matches: 201, Mismatches: 33, Indels: 41
0.73 0.12 0.15
Matches are distributed among these distances:
45 3 0.01
46 78 0.39
47 81 0.40
48 37 0.18
49 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACATTGGCTTCATCTCGTAGCCGATGCA
Found at i:86131587 original size:94 final size:94
Alignment explanation
Indices: 86131395--86131700 Score: 408
Period size: 94 Copynumber: 3.3 Consensus size: 94
86131385 GTCGATGCTG
* ** *
86131395 TGTCCCAAACATGGTCTTACACT-GACTATCATCTC-GTAGCCGATG-CATGTCCCAGACAT-GT
1 TGTCCCAGACAT-GTCTTACACTAG-CCCTCATCTCAATA-CCGATGCCATGTCCCAGACATGGT
* * * * **
86131456 CTTACATTGGCT-TACGT-CTCGAGGTCTTTGCA
63 CTTACATTGGCTCT-CATAAT-GTGGCCGATGCA
86131488 TGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATACCGATGCCATGTCCCAGACATGGTCTT
1 TGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATACCGATGCCATGTCCCAGACATGGTCTT
86131553 ACATTGGCTCTCATAATGTGGCCGATGCA
66 ACATTGGCTCTCATAATGTGGCCGATGCA
** *
86131582 TGTCCCAGACATGTCTTACACTAGCCCTTGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTT
1 TGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATACCGATGCCATGTCCCAGACATGGTCTT
86131647 ACATTGGCTCTCATAATGTGGCCGATGCA
66 ACATTGGCTCTCATAATGTGGCCGATGCA
86131676 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
86131701 TCACACACGA
Statistics
Matches: 194, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
92 24 0.12
93 28 0.14
94 140 0.72
95 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (94 bp):
TGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATACCGATGCCATGTCCCAGACATGGTCTT
ACATTGGCTCTCATAATGTGGCCGATGCA
Found at i:86131615 original size:140 final size:141
Alignment explanation
Indices: 86131395--86131649 Score: 329
Period size: 140 Copynumber: 1.8 Consensus size: 141
86131385 GTCGATGCTG
*
86131395 TGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAAACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTA
* * * * **
86131460 CATTGGCTTACGTCTCGAGGTCTTTG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCATCTCA
66 CATAGCCTTA-GTCTCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCATCTCA
86131523 ATACCGATGCCA
130 ATACCGATGCCA
* * * * *
86131535 TGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTT
1 TGTCCCAAACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTT
*
86131599 ACACTAGCCCTT-GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
65 ACA-TAG-CCTTAGTCTCAAGGCCGATGCCATGTCCCAGACATGGTCTTACA
86131650 TTGGCTCTCA
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
140 69 0.71
141 17 0.18
142 11 0.11
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.29
Consensus pattern (141 bp):
TGTCCCAAACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTA
CATAGCCTTAGTCTCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCATCTCAA
TACCGATGCCA
Found at i:86137408 original size:25 final size:25
Alignment explanation
Indices: 86137380--86137431 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
86137370 TTTGGCTTGA
**
86137380 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
86137405 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
86137430 CA
1 CA
86137432 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:86142601 original size:43 final size:43
Alignment explanation
Indices: 86142546--86142736 Score: 213
Period size: 43 Copynumber: 4.5 Consensus size: 43
86142536 ATATGGGCAC
* * ** *
86142546 ACATAGTACATCATCGGATAAATTGAAACAATTATACTAGCAT
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
* * * * *
86142589 ATACAGTGCATCATTGGATATACCGAAGTAATTATACTAGCTT
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
* *
86142632 ACATAGTGCATCATTGGATATACCGAAGTAATTATACTAGCAT
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
* * * * *
86142675 AGATAGTTCATCATCGGATATACCGAAA-AATTATATTGGCAC
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
*
86142717 ACATTGTGCATCATCGGATA
1 ACATAGTGCATCATCGGATA
86142737 AACTAAAGTA
Statistics
Matches: 125, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 28 0.22
43 97 0.78
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.30
Consensus pattern (43 bp):
ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
Found at i:86143704 original size:15 final size:15
Alignment explanation
Indices: 86143686--86143726 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
86143676 TTATAATTAA
86143686 CTTAATTAACCTAAG
1 CTTAATTAACCTAAG
* *
86143701 CTTAGTTAAACTTAAG
1 CTTAATT-AACCTAAG
86143717 CTTAATTAAC
1 CTTAATTAAC
86143727 AATTTTGGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (15 bp):
CTTAATTAACCTAAG
Found at i:86145252 original size:43 final size:43
Alignment explanation
Indices: 86145197--86145387 Score: 213
Period size: 43 Copynumber: 4.5 Consensus size: 43
86145187 ATATGGGCAC
* * ** *
86145197 ACATAGTACATCATCGGATAAATTGAAACAATTATACTAGCAT
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
* * * * *
86145240 ATACAGTGCATCATTGGATATACCGAAGTAATTATACTAGCTT
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
* *
86145283 ACATAGTGCATCATTGGATATACCGAAGTAATTATACTAGCAT
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
* * * * *
86145326 AGATAGTTCATCATCGGATATACCGAAA-AATTATATTGGCAC
1 ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
*
86145368 ACATTGTGCATCATCGGATA
1 ACATAGTGCATCATCGGATA
86145388 AACTAAAGTA
Statistics
Matches: 125, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 28 0.22
43 97 0.78
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.30
Consensus pattern (43 bp):
ACATAGTGCATCATCGGATATACCGAAATAATTATACTAGCAT
Found at i:86146355 original size:15 final size:15
Alignment explanation
Indices: 86146337--86146377 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
86146327 TTATAATTAA
86146337 CTTAATTAACCTAAG
1 CTTAATTAACCTAAG
* *
86146352 CTTAGTTAAACTTAAG
1 CTTAATT-AACCTAAG
86146368 CTTAATTAAC
1 CTTAATTAAC
86146378 AATTTTGGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (15 bp):
CTTAATTAACCTAAG
Found at i:86148023 original size:27 final size:27
Alignment explanation
Indices: 86147947--86148060 Score: 97
Period size: 27 Copynumber: 4.2 Consensus size: 27
86147937 CATGGCTGCC
* * * *
86147947 AGAACAGATA-TTGTGACAGAGTCACC
1 AGAACAGATATTTGTGGCATAGCCACA
* * * *
86147973 AGATACTGATA-TTATGGCAAAGCCACT
1 AGA-ACAGATATTTGTGGCATAGCCACA
*
86148000 AGAACAGATATTTGTGGCGTAGCCACCA
1 AGAACAGATATTTGTGGCATAGCCA-CA
* *
86148028 AAAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTTGTGGCATAGCCACA
86148055 AGAACA
1 AGAACA
86148061 CTTCCTCCAT
Statistics
Matches: 70, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
26 9 0.13
27 37 0.53
28 24 0.34
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
AGAACAGATATTTGTGGCATAGCCACA
Found at i:86148039 original size:28 final size:28
Alignment explanation
Indices: 86148002--86148055 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
86147992 AAGCCACTAG
*
86148002 AACAGATATTTGTGGCGTAGCCACCAAA
1 AACAGATATTTGTGGCATAGCCACCAAA
86148030 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATATTTGTGGCATAGCCACCA
86148056 GAACACTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22
Consensus pattern (28 bp):
AACAGATATTTGTGGCATAGCCACCAAA
Found at i:86148059 original size:55 final size:53
Alignment explanation
Indices: 86147945--86148060 Score: 126
Period size: 54 Copynumber: 2.2 Consensus size: 53
86147935 AGCATGGCTG
* * * *
86147945 CCAGAACAGATATTGTGACAGAGTCACCAGATACTGATATTATGGCAAAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAAAAACAGATATTATGGCAAAGCCA
* * * *
86147998 CTAGAACAGATATTTGTGGC-GTAGCCACCAAAAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACCAAAAACAGATA-TTATGGCAAAGCCA
86148053 CCAGAACA
1 CCAGAACA
86148061 CTTCCTCCAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
53 12 0.24
54 20 0.39
55 19 0.37
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAAAAACAGATATTATGGCAAAGCCA
Found at i:86148246 original size:28 final size:27
Alignment explanation
Indices: 86148189--86148248 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
86148179 ATTTTGCACC
*
86148189 TAGGGGTATAATAGTAATTTTCATTCT
1 TAGGGGTATAATAGTAATTTACATTCT
**
86148216 TAGGGGTATTTTAGTAAATTTACTATT-T
1 TAGGGGTATAATAGT-AATTTAC-ATTCT
86148244 TAGGG
1 TAGGG
86148249 TTTTCATGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 13 0.46
28 12 0.43
29 3 0.11
ACGTcount: A:0.28, C:0.05, G:0.22, T:0.45
Consensus pattern (27 bp):
TAGGGGTATAATAGTAATTTACATTCT
Found at i:86148479 original size:8 final size:8
Alignment explanation
Indices: 86148468--86148507 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
86148458 CGCAAGATGC
*
86148468 CGGCTCTT
1 CGGCTTTT
*
86148476 CGGCATTT
1 CGGCTTTT
86148484 CGGCTTTT
1 CGGCTTTT
86148492 CGGCTTTT
1 CGGCTTTT
86148500 CGGCTTTT
1 CGGCTTTT
86148508 GTCGATCTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.03, C:0.28, G:0.25, T:0.45
Consensus pattern (8 bp):
CGGCTTTT
Found at i:86149466 original size:27 final size:28
Alignment explanation
Indices: 86149414--86149466 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
86149404 AAGTCCAAAT
86149414 GCCGAAATTCCCTATACTAAATGACCTA
1 GCCGAAATTCCCTATACTAAATGACCTA
* *
86149442 GCCGAATTTGCCTATACTAAA-GACC
1 GCCGAAATTCCCTATACTAAATGACC
86149467 CTTGGTCGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
GCCGAAATTCCCTATACTAAATGACCTA
Found at i:86152563 original size:20 final size:20
Alignment explanation
Indices: 86152538--86152587 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
86152528 ATCAGTACTC
86152538 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
86152558 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
86152578 TTATCCTGAA
1 TTATCCTGAA
86152588 AAAAATCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (20 bp):
TTATCCTGAATTTCAGGATT
Found at i:86155671 original size:2 final size:2
Alignment explanation
Indices: 86155664--86155702 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
86155654 AACTTGAAAT
86155664 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86155703 GCTTTAATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:86162729 original size:40 final size:40
Alignment explanation
Indices: 86162667--86162924 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
86162657 AAGCCAAGTA
* * * *
86162667 CCTTCGGGAGTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
86162706 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
86162746 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86162786 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
86162826 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
86162866 GCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
86162906 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86162925 TTATCATCTG
Statistics
Matches: 200, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 13 0.06
40 187 0.94
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:86165434 original size:48 final size:48
Alignment explanation
Indices: 86165381--86165479 Score: 182
Period size: 48 Copynumber: 2.1 Consensus size: 48
86165371 TTTTTCGAGT
86165381 GTTAGGTTGACTTAGATTTGAAGAGAAGCAATCGCCTAAGGCCT-TGTG
1 GTTAGGTTGACTTAGATTTGAAGAGAAGCAATCGCCTAAGG-CTATGTG
86165429 GTTAGGTTGACTTAGATTTGAAGAGAAGCAATCGCCTAAGGCTATGTG
1 GTTAGGTTGACTTAGATTTGAAGAGAAGCAATCGCCTAAGGCTATGTG
86165477 GTT
1 GTT
86165480 TGCTAGACTA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 2 0.04
48 48 0.96
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.30
Consensus pattern (48 bp):
GTTAGGTTGACTTAGATTTGAAGAGAAGCAATCGCCTAAGGCTATGTG
Found at i:86167167 original size:22 final size:22
Alignment explanation
Indices: 86167141--86167184 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
86167131 AAAAACCCGA
86167141 AAACAAAGAAATT-TCAAAATGT
1 AAACAAA-AAATTCTCAAAATGT
* *
86167163 AAACACAAAATTCTCTAAATGT
1 AAACAAAAAATTCTCAAAATGT
86167185 GTTATGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.25
Consensus pattern (22 bp):
AAACAAAAAATTCTCAAAATGT
Found at i:86167291 original size:24 final size:24
Alignment explanation
Indices: 86167263--86167315 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
86167253 TTAGTAAGTC
* *
86167263 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
86167287 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
86167311 AAATA
1 AAATA
86167316 TTCTAGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:86169245 original size:24 final size:24
Alignment explanation
Indices: 86169217--86169269 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
86169207 TTAGTAAGTC
* *
86169217 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
86169241 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
86169265 AAATA
1 AAATA
86169270 TTTTAGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:86169709 original size:15 final size:15
Alignment explanation
Indices: 86169689--86169718 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86169679 ACACATCGAC
86169689 TTCTTCAGTTGACAT
1 TTCTTCAGTTGACAT
86169704 TTCTTCAGTTGACAT
1 TTCTTCAGTTGACAT
86169719 CTCCCCAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (15 bp):
TTCTTCAGTTGACAT
Found at i:86179261 original size:25 final size:25
Alignment explanation
Indices: 86179229--86179288 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
86179219 GAGCTGTAAA
86179229 CGGTAAGCTCATACGAGTTGAATAT
1 CGGTAAGCTCATACGAGTTGAATAT
* *
86179254 TGGTAAGCTCATGCGAGTTGAATAT
1 CGGTAAGCTCATACGAGTTGAATAT
86179279 CGGTAAGCTC
1 CGGTAAGCTC
86179289 TCTCAAGTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (25 bp):
CGGTAAGCTCATACGAGTTGAATAT
Found at i:86180188 original size:21 final size:21
Alignment explanation
Indices: 86180164--86180203 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
86180154 AATTAAATTA
86180164 TTTTAATTT-CACTTTAATTTG
1 TTTTAATTTCCA-TTTAATTTG
86180185 TTTTAATTTCCATTTAATT
1 TTTTAATTTCCATTTAATT
86180204 ATAAAATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTAATTTCCATTTAATTTG
Found at i:86182521 original size:30 final size:31
Alignment explanation
Indices: 86182497--86182555 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
86182487 GTAAATACTC
*
86182497 AAAATTTGAGAGG-CTAA-AGTGTAAATATGA
1 AAAATTTGA-AGGACCAATAGTGTAAATATGA
86182527 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAATAGTGTAAATAT
86182556 TTTAAGGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 3 0.12
30 12 0.46
31 11 0.42
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAATTTGAAGGACCAATAGTGTAAATATGA
Found at i:86182840 original size:14 final size:14
Alignment explanation
Indices: 86182804--86182830 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86182794 GAGATATTTT
86182804 ATTATTTTATTATC
1 ATTATTTTATTATC
86182818 ATTATTTTATTAT
1 ATTATTTTATTAT
86182831 TATTTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATTTTATTATC
Found at i:86183402 original size:23 final size:22
Alignment explanation
Indices: 86183372--86183415 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
86183362 AAAATTGTAG
86183372 AAATTG-AATTACAAGTTGAATA
1 AAATTGAAATTA-AAGTTGAATA
*
86183394 AAATATGAAATTAAATTTGAAT
1 AAAT-TGAAATTAAAGTTGAAT
86183416 CTAGTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 10 0.53
24 5 0.26
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.34
Consensus pattern (22 bp):
AAATTGAAATTAAAGTTGAATA
Found at i:86185948 original size:40 final size:40
Alignment explanation
Indices: 86185824--86185950 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 40
86185814 GCTGGAAATT
* * * * **
86185824 TATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTA
* * ** *
86185864 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTA
86185904 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATTA
86185944 TATCCGG
1 TATCCGG
86185951 TTATATTCCG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTA
Found at i:86195969 original size:42 final size:42
Alignment explanation
Indices: 86195922--86196013 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
86195912 TGGCCCTTAG
* ** *
86195922 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
86195964 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
86196006 GCCCATTT
1 GCCCATTT
86196014 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:86196200 original size:25 final size:25
Alignment explanation
Indices: 86196166--86196230 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
86196156 TTAATAATTG
*
86196166 GGGCAAAGCCC-TTTCTGATAAACTA
1 GGGCAGAGCCCTTTTC-GATAAACTA
* *
86196191 GGGCAGAGCCCTTTTCGGTAAACTG
1 GGGCAGAGCCCTTTTCGATAAACTA
86196216 GGGCAGAGCCCTTTT
1 GGGCAGAGCCCTTTT
86196231 AGCACTTCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (25 bp):
GGGCAGAGCCCTTTTCGATAAACTA
Found at i:86197086 original size:27 final size:27
Alignment explanation
Indices: 86197025--86197088 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
86197015 GGCGTATCCA
86197025 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
86197052 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
86197079 TCTTTTTACC
1 TCATTTTACC
86197089 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:86197172 original size:27 final size:27
Alignment explanation
Indices: 86197142--86197250 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 27
86197132 GTAAATCTAC
86197142 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * *
86197169 AAACCAATGGAATTCCTA-TAATTTT-T
1 AAACCAAGGGTATT-TTAGTAATTTTGT
* *
86197195 AAAAAAGTCAAGGGTATTTTTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTTAGTAATTTTGT
* * *
86197226 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTTAGTAATTTT
86197251 ACAAATTGAG
Statistics
Matches: 65, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
26 1 0.02
27 39 0.60
28 5 0.08
29 4 0.06
30 15 0.23
31 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:86197256 original size:27 final size:26
Alignment explanation
Indices: 86197206--86197302 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 26
86197196 AAAAAGTCAA
* *
86197206 GGGTATTTTTGTAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTT-CAAATCAG
*
86197233 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTT-CAAATCAG
* *
86197259 AGGGTATTTCGGTAATTTCTCAAACCAG
1 -GGGTATTTTGGTAATTT-TCAAATCAG
*
86197287 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
86197303 CTATCCTACA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
26 1 0.02
27 55 0.95
28 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTCAAATCAG
Found at i:86197436 original size:81 final size:81
Alignment explanation
Indices: 86197334--86197584 Score: 389
Period size: 81 Copynumber: 3.1 Consensus size: 81
86197324 GTAATTTCAC
* * *
86197334 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTATAAATCGAGGGT
86197398 AAAACGATAATTCTATA
65 AAAACGATAATTCTATA
** *
86197415 AATCGAGGGTACCATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
*
86197480 AAACGGTAATTCTATA
66 AAACGATAATTCTATA
* *
86197496 AATCGAGGGTAAAATTGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTAT-AATCGAAGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
*
86197560 AAACGATAATTCTGTA
66 AAACGATAATTCTATA
86197576 AATCGAGGG
1 AATCGAGGG
86197585 CACTTTGGTA
Statistics
Matches: 155, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 33 0.21
81 121 0.78
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:86197597 original size:27 final size:27
Alignment explanation
Indices: 86197334--86197584 Score: 344
Period size: 27 Copynumber: 9.3 Consensus size: 27
86197324 GTAATTTCAC
* *
86197334 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
86197361 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* *
86197388 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
**
86197415 AATCGAGGGTACCATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
86197442 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
86197469 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
86197496 AATCGAGGGTAAAATTGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
86197523 AATCGAGGGTAAAATGGTAATTTTAT-
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
86197549 AATCGAAGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
86197576 AATCGAGGG
1 AATCGAGGG
86197585 CACTTTGGTA
Statistics
Matches: 200, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
26 22 0.11
27 177 0.88
28 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:86198683 original size:46 final size:46
Alignment explanation
Indices: 86198616--86198867 Score: 326
Period size: 46 Copynumber: 5.5 Consensus size: 46
86198606 GGGTGTTACA
*
86198616 GAAAGATACCATGGCAACATGATATGAAAT-ATGTAAGACCATGGTT
1 GAAAGATACCATGGCAACATGACATGAAATGA-GTAAGACCATGGTT
* * *
86198662 GAAAGATACCATGGCAACATGATATGAAGTGTGTAAGACCATGGTT
1 GAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGGTT
* *
86198708 GAAATATACCATGGCAACATGACATGAAATGACTAAGACCATGGTT
1 GAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGGTT
* ** *
86198754 GAAAGACACCATGGCAACATGACGGGGAAATGAATAAGACCATGGTT
1 GAAAGATACCATGGCAACATGAC-ATGAAATGAGTAAGACCATGGTT
** *
86198801 GAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTT
1 GAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGGTT
* * * *
86198847 AAAAGACACTATGGCATCATG
1 GAAAGATACCATGGCAACATG
86198868 TCGAAGATAA
Statistics
Matches: 182, Mismatches: 22, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
46 140 0.77
47 42 0.23
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (46 bp):
GAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGGTT
Found at i:86198831 original size:93 final size:91
Alignment explanation
Indices: 86198616--86198867 Score: 308
Period size: 93 Copynumber: 2.7 Consensus size: 91
86198606 GGGTGTTACA
* * *
86198616 GAAAGATACCATGGCAACATGATATGAAATATG-TAAGACCATGGTTGAAAGATACCATGGCAAC
1 GAAAGATACCATGGCAACATGACA--AAAAATGATAAGACCATGGTTGAAAGACACCATGGCAAC
* * * **
86198680 ATGATATGAAGTGTGTAAGACCATGGTT
64 ATGAGAGGAAATGAATAAGACCATGGTT
* **
86198708 GAAATATACCATGGCAACATGACATGAAATGACTAAGACCATGGTTGAAAGACACCATGGCAACA
1 GAAAGATACCATGGCAACATGACAAAAAATGA-TAAGACCATGGTTGAAAGACACCATGGCAACA
*
86198773 TGACGGGGAAATGAATAAGACCATGGTT
65 TGA-GAGGAAATGAATAAGACCATGGTT
* * * *
86198801 GAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTAAAAGACACTATGGCATCA
1 GAAAGATACCATGGCAACATGACAAAAAATGA-TAAGACCATGGTTGAAAGACACCATGGCAACA
86198866 TG
65 TG
86198868 TCGAAGATAA
Statistics
Matches: 137, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
90 4 0.03
92 56 0.41
93 77 0.56
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (91 bp):
GAAAGATACCATGGCAACATGACAAAAAATGATAAGACCATGGTTGAAAGACACCATGGCAACAT
GAGAGGAAATGAATAAGACCATGGTT
Found at i:86198980 original size:26 final size:24
Alignment explanation
Indices: 86198950--86199019 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 24
86198940 ACCAGATGAC
*
86198950 AAATGGTTATATGAATTGGTTATACA
1 AAATGGTTATATGAAAT-GTT-TACA
* *
86198976 AAATGGTTGTGTGAAATGTTTACA
1 AAATGGTTATATGAAATGTTTACA
86199000 AGAATTGGTTATATAGAAAT
1 A-AA-TGGTTATAT-GAAAT
86199020 ATATATGTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
26 21 0.58
27 5 0.14
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.37
Consensus pattern (24 bp):
AAATGGTTATATGAAATGTTTACA
Found at i:86201197 original size:18 final size:18
Alignment explanation
Indices: 86201157--86201204 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
86201147 AGGCAAATGT
*
86201157 GAAATATTGAATTGAAAA
1 GAAATATTGAAATGAAAA
* * *
86201175 TAAATTTTGAAATGAAAG
1 GAAATATTGAAATGAAAA
*
86201193 GAAATAATGAAA
1 GAAATATTGAAA
86201205 CTATAGAATT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (18 bp):
GAAATATTGAAATGAAAA
Found at i:86201767 original size:14 final size:14
Alignment explanation
Indices: 86201748--86201774 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86201738 TAATGAGATA
86201748 TTTTATTATTTTAT
1 TTTTATTATTTTAT
86201762 TTTTATTATTTTA
1 TTTTATTATTTTA
86201775 ATATAAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTATTATTTTAT
Found at i:86203047 original size:51 final size:51
Alignment explanation
Indices: 86202971--86203086 Score: 205
Period size: 51 Copynumber: 2.3 Consensus size: 51
86202961 AAGTTATCCA
86202971 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCCG
1 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCCG
*
86203022 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTTCG
1 GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCCG
* *
86203073 AATGAAGTATGAAG
1 GATGAAATATGAAG
86203087 TAAGTTTGAG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (51 bp):
GATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAATTCCG
Found at i:86204035 original size:21 final size:21
Alignment explanation
Indices: 86204011--86204083 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
86204001 CAACATGATA
86204011 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * * * *
86204032 TGAAATATGCCATGGCAACATGAT
1 TGAAATGTG-TA-AG-ACCATGGT
86204056 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
86204078 TGAAAT
1 TGAAAT
86204084 ATACCATGGC
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
21 14 0.37
22 7 0.18
23 2 0.05
24 7 0.18
25 8 0.21
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:86204061 original size:25 final size:25
Alignment explanation
Indices: 86203986--86204062 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
86203976 AGACCATTGT
* *
86203986 TGAAAGATACCATGGCAACATGATA
1 TGAAATATGCCATGGCAACATGATA
* * * * *
86204011 TGAAATGTG-TA-AG-ACCATGGT-
1 TGAAATATGCCATGGCAACATGATA
86204032 TGAAATATGCCATGGCAACATGATA
1 TGAAATATGCCATGGCAACATGATA
86204057 TGAAAT
1 TGAAAT
86204063 GTGTAAGACC
Statistics
Matches: 36, Mismatches: 12, Indels: 8
0.64 0.21 0.14
Matches are distributed among these distances:
21 8 0.22
22 7 0.19
23 2 0.06
24 7 0.19
25 12 0.33
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (25 bp):
TGAAATATGCCATGGCAACATGATA
Found at i:86204173 original size:47 final size:47
Alignment explanation
Indices: 86203928--86204259 Score: 383
Period size: 46 Copynumber: 7.2 Consensus size: 47
86203918 AAGAAATGTG
* * *
86203928 TAAGACCATTGTTGAAAGATACCATGGTAACATGA-TATGAAAT-ATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATGAAATGA-A
* **
86203974 TAAGACCATTGTTGAAAGATACCATGGCAACATGA-TATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATGAAATGAA
* * **
86204020 TAAGACCATGGTTGAAATATGCCATGGCAACATGA-TATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATGAAATGAA
* * *
86204066 TAAGACCATGGTTGAAATATACCATGGCAACGTAAC-ATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATGAAATGAA
***
86204112 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATGAAATGAA
* ** *
86204159 TAAGACAATGGTTGAAAGATACCATGGCAACATGAC-GGGAAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATG-AAATGAA
* *
86204206 TAAGACCATGGTTGAAAGATACCATGGAAACATGAC-A-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATG-AAATGAA
86204252 TAAGACCA
1 TAAGACCA
86204260 CATGTCGAAG
Statistics
Matches: 260, Mismatches: 22, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
46 177 0.68
47 83 0.32
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (47 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACTATGAAATGAA
Found at i:86206967 original size:19 final size:20
Alignment explanation
Indices: 86206945--86206987 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
86206935 AAATAGATAT
86206945 TTATTTA-AATAATAAATTA
1 TTATTTATAATAATAAATTA
* *
86206964 TTA-TTATAATTATTAATTA
1 TTATTTATAATAATAAATTA
86206983 TTATT
1 TTATT
86206988 AATATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 3 0.15
19 16 0.80
20 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATTTATAATAATAAATTA
Found at i:86206972 original size:16 final size:18
Alignment explanation
Indices: 86206959--86207000 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
86206949 TTAAATAATA
86206959 AATTATTATTATAATTATT
1 AATTATTATTATAATTA-T
86206978 AATTATTATTA-ATATTAT
1 AATTATTATTATA-ATTAT
86206996 -ATTAT
1 AATTAT
86207001 GAAATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.23
18 2 0.09
19 15 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AATTATTATTATAATTAT
Found at i:86207385 original size:9 final size:9
Alignment explanation
Indices: 86207371--86207396 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
86207361 AAATAGATTT
86207371 TTATTATAG
1 TTATTATAG
86207380 TTATTATAG
1 TTATTATAG
86207389 TTATTATA
1 TTATTATA
86207397 TATATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
TTATTATAG
Found at i:86208238 original size:2 final size:2
Alignment explanation
Indices: 86208233--86208266 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
86208223 TATATATATA
86208233 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
86208267 AATGAGATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:86208765 original size:6 final size:6
Alignment explanation
Indices: 86208745--86208778 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
86208735 ATGTGTCGAA
*
86208745 TACTGT TACTAGT TACTGT TACTGT TACTAT TAC
1 TACTGT TACT-GT TACTGT TACTGT TACTGT TAC
86208779 CGATTCGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:86208846 original size:6 final size:6
Alignment explanation
Indices: 86208806--86208852 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
86208796 TGCCGGATAT
* * *
86208806 TGTTAC TATTAC CGTTAT TGTTAC TG-TAC TG-TAC TGTTAC TGTTAC
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC
86208852 T
1 T
86208853 ATTGTTGTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
5 10 0.29
6 24 0.71
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
TGTTAC
Found at i:86208999 original size:19 final size:19
Alignment explanation
Indices: 86208977--86209027 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
86208967 AAAGATCGAC
86208977 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAATTTAAT
* *
86208996 TGTTACTGTAT-ATCTAAT
1 TGTTACTGAATAATTTAAT
86209014 T-TTACTGAATAATT
1 TGTTACTGAATAATT
86209028 GACTATTACT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 8 0.30
18 9 0.33
19 10 0.37
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (19 bp):
TGTTACTGAATAATTTAAT
Found at i:86209270 original size:2 final size:2
Alignment explanation
Indices: 86209263--86209289 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86209253 GAATAGTTCA
86209263 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
86209290 AAATTAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86211155 original size:17 final size:17
Alignment explanation
Indices: 86211135--86211168 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86211125 ATCTGTCCCT
86211135 ATTTCAAAATTGAAAAC
1 ATTTCAAAATTGAAAAC
**
86211152 ATTTTTAAATTGAAAAC
1 ATTTCAAAATTGAAAAC
86211169 CTTTTTAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (17 bp):
ATTTCAAAATTGAAAAC
Found at i:86211173 original size:17 final size:17
Alignment explanation
Indices: 86211141--86211176 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
86211131 CCCTATTTCA
86211141 AAATTGAAAACATTTTT
1 AAATTGAAAACATTTTT
*
86211158 AAATTGAAAACCTTTTT
1 AAATTGAAAACATTTTT
86211175 AA
1 AA
86211177 CATTATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATTGAAAACATTTTT
Found at i:86211619 original size:18 final size:21
Alignment explanation
Indices: 86211579--86211624 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 21
86211569 TTTTGGTTGG
*
86211579 TTATTATTACTATCATTATTT
1 TTATTATTACTATAATTATTT
86211600 TTATTATT-CT-TAATTA-TT
1 TTATTATTACTATAATTATTT
86211618 TTATTAT
1 TTATTAT
86211625 GGATTTGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 5 0.21
20 2 0.08
21 8 0.33
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATTATTACTATAATTATTT
Found at i:86212333 original size:7 final size:7
Alignment explanation
Indices: 86212316--86212348 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
86212306 ATTGATTCTT
86212316 AAAAGTTC
1 AAAA-TTC
86212324 AAAATTC
1 AAAATTC
86212331 AAAATTC
1 AAAATTC
86212338 AAAATT-
1 AAAATTC
86212344 AAAAT
1 AAAAT
86212349 AATAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 5 0.20
7 16 0.64
8 4 0.16
ACGTcount: A:0.61, C:0.09, G:0.03, T:0.27
Consensus pattern (7 bp):
AAAATTC
Found at i:86212365 original size:8 final size:8
Alignment explanation
Indices: 86212354--86212381 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
86212344 AAAATAATAA
86212354 ATAATTAT
1 ATAATTAT
86212362 ATAATTAT
1 ATAATTAT
86212370 ATAATTAT
1 ATAATTAT
86212378 ATAA
1 ATAA
86212382 AAGTTCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
ATAATTAT
Found at i:86213095 original size:13 final size:13
Alignment explanation
Indices: 86213063--86213099 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
86213053 AGCTATATAT
86213063 GTTATTTTTTTAA
1 GTTATTTTTTTAA
*
86213076 -TT-GTTTTTTAA
1 GTTATTTTTTTAA
86213087 GTTATTTTTTTAA
1 GTTATTTTTTTAA
86213100 ATTAGTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
11 8 0.40
12 4 0.20
13 8 0.40
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.70
Consensus pattern (13 bp):
GTTATTTTTTTAA
Found at i:86213538 original size:17 final size:18
Alignment explanation
Indices: 86213518--86213553 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
86213508 TTAAGTTAAA
86213518 TTTAAAATT-TTTTATTT
1 TTTAAAATTATTTTATTT
86213535 TTTAAAATTATTTTATTT
1 TTTAAAATTATTTTATTT
86213553 T
1 T
86213554 GTTGATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTAAAATTATTTTATTT
Found at i:86219961 original size:27 final size:25
Alignment explanation
Indices: 86219905--86219980 Score: 71
Period size: 27 Copynumber: 2.9 Consensus size: 25
86219895 ACAAATTTTC
* * **
86219905 TCAAAATTTTATTGAGGGTAAAATTT
1 TCAAAACTTTACTG-GGGTAAAATCA
86219931 TCAAAACTTTACTGGATGGTAAAATCA
1 TCAAAACTTTACTGG--GGTAAAATCA
* *
86219958 TCAAAATTTTATTGGGGTAAAAT
1 TCAAAACTTTACTGGGGTAAAAT
86219981 TGGGATGAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
25 9 0.21
26 12 0.29
27 21 0.50
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (25 bp):
TCAAAACTTTACTGGGGTAAAATCA
Found at i:86221778 original size:18 final size:17
Alignment explanation
Indices: 86221747--86221780 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
86221737 GAAACATTAG
*
86221747 GATTTTTTTTAGAAACA
1 GATTTTTTTAAGAAACA
86221764 GATTTTTTTAAAGAAAC
1 GATTTTTTT-AAGAAAC
86221781 TTTAGTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (17 bp):
GATTTTTTTAAGAAACA
Found at i:86222282 original size:42 final size:42
Alignment explanation
Indices: 86222236--86222340 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
86222226 TCGCATGGGA
* * *
86222236 AGCTTCACTGATAAACAGTTTAACATTTAAGCTTACGTAGAG
1 AGCTTCACTGATAAACAGCTTAACACTTAAGCTCACGTAGAG
* * * *
86222278 AGCTTTACTAATACAA-AGCTTATCACTTAAGCTCACGTAGGG
1 AGCTTCACTGATA-AACAGCTTAACACTTAAGCTCACGTAGAG
* *
86222320 AGCTTCGCTGATACACAGCTT
1 AGCTTCACTGATAAACAGCTT
86222341 GTAAAATCAT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.02
42 47 0.94
43 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (42 bp):
AGCTTCACTGATAAACAGCTTAACACTTAAGCTCACGTAGAG
Done.