Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 279 of 410
Found at i:86230424 original size:26 final size:26
Alignment explanation
Indices: 86230388--86230439 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
86230378 CACAACATAG
*
86230388 CCATAATCTCTATCATTGCGGCTTAA
1 CCATAATCTCTATCATTGCGACTTAA
*
86230414 CCATAGTCTCTATCATTGCGACTTAA
1 CCATAATCTCTATCATTGCGACTTAA
86230440 ACCGTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
CCATAATCTCTATCATTGCGACTTAA
Found at i:86230628 original size:49 final size:49
Alignment explanation
Indices: 86230563--86230874 Score: 172
Period size: 49 Copynumber: 6.6 Consensus size: 49
86230553 ATCAAAGTCG
* * *
86230563 ATGCCATGTCCCAGACAAGTCTTACACTGACTTTTATATATCGAG-GCCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGCCA
* * * * * *
86230612 ATGCCGTGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCA
* * **
86230661 ATGCCATGTCCCAGACAGGTCTTACACTGA----CACATATCA-AGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCA
* * * * **
86230705 ATGCCATGTCCCAAAAAGGTCTTACACT-AGCT-TGTATATCTCGAG-GCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATC-AGTGCCA
* * * * * *
86230754 ATG-CATGTCCCAGACATGTCTTACACT-AGCTCTCGTCTA--AATCCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCAGTGCCA
* * * *
86230800 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATA-AT--GTGGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCAGT-GCCA
*
86230848 ATG-CATGTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
86230875 AGCACACATA
Statistics
Matches: 206, Mismatches: 42, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.00
44 28 0.14
45 8 0.04
46 14 0.07
47 28 0.14
48 54 0.26
49 73 0.35
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGCCA
Found at i:86230817 original size:47 final size:46
Alignment explanation
Indices: 86230753--86230877 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 46
86230743 TCTCGAGGCT
*
86230753 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTAA-AT-CCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTC--ATAATATGCCC
* * * **
86230799 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATATGCCC
86230847 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
86230878 ACACATATCA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
46 18 0.27
47 29 0.43
48 20 0.30
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGCCC
Found at i:86230869 original size:142 final size:142
Alignment explanation
Indices: 86230520--86230877 Score: 363
Period size: 142 Copynumber: 2.5 Consensus size: 142
86230510 TGTCGACGTA
* * * *
86230520 ATGTCCCAGACATGGTCTTATACTGGCTAGCACATCAAAGTCGATGCCATGTCCCAGACAAGTCT
1 ATGTCCCAGACA-GGTCTTACACTGAC-A-CATATCAAGGTCGATGCCATGTCCCAGACAAGTCT
* * * *
86230585 TACACT-GACTTTTATATATCGAGGCCAATGCCGTGTCCTAGACAGGTCTTACACTGGCTCTCAT
63 TACACTAG-CTTGTATATATCGAGGCCAATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCAT
* **
86230649 CTATCAGTGTCGATGCC
127 CTA-CAATCCCGATGCC
* *
86230666 ATGTCCCAGACAGGTCTTACACTGACACATATCAAGCT-GATGCCATGTCCCA-AAAAGGTCTTA
1 ATGTCCCAGACAGGTCTTACACTGACACATATCAAGGTCGATGCCATGTCCCAGACAA-GTCTTA
* ** * *
86230729 CACTAGCTTGTATATCTCGAGGCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTA
65 CACTAGCTTGTATATATCGAGGCCAATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTA
86230793 -AATCCCGATGCC
130 CAATCCCGATGCC
* * * *
86230805 ATGTCCCAGACATGGTCTTACATTGGCTC-TCAT-AATGTGGTCGATG-CATGTCCCAGACATGT
1 ATGTCCCAGACA-GGTCTTACACTGACACAT-ATCAA---GGTCGATGCCATGTCCCAGACAAGT
86230867 CTTACACTAGC
61 CTTACACTAGC
86230878 ACACATATCA
Statistics
Matches: 179, Mismatches: 24, Indels: 22
0.80 0.11 0.10
Matches are distributed among these distances:
139 24 0.13
140 15 0.08
141 34 0.19
142 66 0.37
143 15 0.08
144 1 0.01
145 12 0.07
146 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (142 bp):
ATGTCCCAGACAGGTCTTACACTGACACATATCAAGGTCGATGCCATGTCCCAGACAAGTCTTAC
ACTAGCTTGTATATATCGAGGCCAATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTAC
AATCCCGATGCC
Found at i:86234947 original size:1 final size:1
Alignment explanation
Indices: 86234941--86234973 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
86234931 TCACCTATAT
86234941 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
86234974 CCTTATACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:86246159 original size:46 final size:46
Alignment explanation
Indices: 86246096--86246271 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
86246086 TATTTGGGCA
*
86246096 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
86246142 TTCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
86246187 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
86246235 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86246272 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.58
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86246251 original size:93 final size:93
Alignment explanation
Indices: 86246092--86246263 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86246082 GGAATATTTG
* * **
86246092 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTTCGAACTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
86246157 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
86246185 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
86246250 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86246264 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86248361 original size:24 final size:24
Alignment explanation
Indices: 86248333--86248383 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
86248323 ATGTGTCGGC
*
86248333 AAAAGCCAAAATGCTGAAAAGTCG
1 AAAAGCCAAAATGCCGAAAAGTCG
86248357 AAAAGCCAAAATGCCGAAAAGTCG
1 AAAAGCCAAAATGCCGAAAAGTCG
86248381 AAA
1 AAA
86248384 GTTTAGCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.18, G:0.20, T:0.10
Consensus pattern (24 bp):
AAAAGCCAAAATGCCGAAAAGTCG
Found at i:86248674 original size:28 final size:28
Alignment explanation
Indices: 86248593--86248678 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
86248583 GTGAGCATTA
* * *
86248593 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCTTAATGGGCC
*
86248621 ATATAAATGTGATTTGGGCTTAATGGGCC
1 ATATGAATGTGA-TTGGGCTTAATGGGCC
*
86248650 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCTTAATGGGCC
86248678 A
1 A
86248679 GATACAAGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 28 0.55
29 23 0.45
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCTTAATGGGCC
Found at i:86249549 original size:18 final size:18
Alignment explanation
Indices: 86249526--86249560 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86249516 TTTCATTATG
86249526 TTATTATTATTTGCATTA
1 TTATTATTATTTGCATTA
*
86249544 TTATTATTATTTTCATT
1 TTATTATTATTTGCATT
86249561 GTAAACGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.66
Consensus pattern (18 bp):
TTATTATTATTTGCATTA
Found at i:86252554 original size:16 final size:16
Alignment explanation
Indices: 86252533--86252575 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
86252523 ATGTGTTGGC
86252533 AAAAGCCGAAATACCA
1 AAAAGCCGAAATACCA
* * *
86252549 AAAAGCCAAAATGCTA
1 AAAAGCCGAAATACCA
*
86252565 AAAAGCTGAAA
1 AAAAGCCGAAA
86252576 GTTTAGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATACCA
Found at i:86252866 original size:28 final size:28
Alignment explanation
Indices: 86252785--86252870 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
86252775 GTGAGCATTA
* *
86252785 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* *
86252813 ATATAAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
86252842 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
86252870 A
1 A
86252871 GATACAGGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.53
29 23 0.47
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:86263448 original size:35 final size:35
Alignment explanation
Indices: 86263409--86263480 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
86263399 AAAAGTCACA
86263409 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
1 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
86263444 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
1 AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
86263479 AA
1 AA
86263481 CTTACTTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.61, C:0.11, G:0.08, T:0.19
Consensus pattern (35 bp):
AAAACACAAAAATTTCAAGAAATAATCAAGAATTG
Found at i:86264439 original size:28 final size:28
Alignment explanation
Indices: 86264408--86264463 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
86264398 AAGGTTGAGT
86264408 TTTTTAACATGTTATAGAAGCAATTAGC
1 TTTTTAACATGTTATAGAAGCAATTAGC
86264436 TTTTTAACATGTTATAGAAGCAATTAGC
1 TTTTTAACATGTTATAGAAGCAATTAGC
86264464 ATAAGCTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (28 bp):
TTTTTAACATGTTATAGAAGCAATTAGC
Found at i:86266100 original size:5 final size:5
Alignment explanation
Indices: 86266092--86266141 Score: 100
Period size: 5 Copynumber: 10.0 Consensus size: 5
86266082 ATTATTAAGT
86266092 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
86266142 AAACATAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:86266436 original size:21 final size:20
Alignment explanation
Indices: 86266404--86266478 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 20
86266394 ATGTTGAAAT
86266404 AATTAAAGAATTAGGGGTTA
1 AATTAAAGAATTAGGGGTTA
****
86266424 AATTAACAGAATTTCAAGTTA
1 AATTAA-AGAATTAGGGGTTA
*
86266445 GAATTGAAGAATTAGGGGTTA
1 -AATTAAAGAATTAGGGGTTA
86266466 AATTAACAGAATT
1 AATTAA-AGAATT
86266479 TCAAGTTAGA
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
20 11 0.26
21 26 0.62
22 5 0.12
ACGTcount: A:0.45, C:0.04, G:0.20, T:0.31
Consensus pattern (20 bp):
AATTAAAGAATTAGGGGTTA
Found at i:86266468 original size:42 final size:41
Alignment explanation
Indices: 86266404--86266496 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 41
86266394 ATGTTGAAAT
86266404 AATTAAAGAATTAGGGGTTAAATTAACAGAATTTCAAGTTAG
1 AATT-AAGAATTAGGGGTTAAATTAACAGAATTTCAAGTTAG
86266446 AATTGAAGAATTAGGGGTTAAATTAACAGAATTTCAAGTTAG
1 AATT-AAGAATTAGGGGTTAAATTAACAGAATTTCAAGTTAG
86266488 AATTAAGAA
1 AATTAAGAA
86266497 AAGGATTGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 5 0.10
42 45 0.90
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.30
Consensus pattern (41 bp):
AATTAAGAATTAGGGGTTAAATTAACAGAATTTCAAGTTAG
Found at i:86266486 original size:21 final size:22
Alignment explanation
Indices: 86266420--86266493 Score: 82
Period size: 21 Copynumber: 3.5 Consensus size: 22
86266410 AGAATTAGGG
86266420 GTTA-AATTAACAGAATTTCAA
1 GTTAGAATTAACAGAATTTCAA
* ****
86266441 GTTAGAATTGA-AGAATTAGGG
1 GTTAGAATTAACAGAATTTCAA
86266462 GTTA-AATTAACAGAATTTCAA
1 GTTAGAATTAACAGAATTTCAA
86266483 GTTAGAATTAA
1 GTTAGAATTAA
86266494 GAAAAGGATT
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
20 5 0.12
21 24 0.60
22 11 0.28
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (22 bp):
GTTAGAATTAACAGAATTTCAA
Found at i:86268775 original size:84 final size:84
Alignment explanation
Indices: 86268652--86268805 Score: 200
Period size: 84 Copynumber: 1.8 Consensus size: 84
86268642 GTATGTGTTA
* * *** ** *
86268652 TCATGTAAGATCATATCTGGGATATGGCGTTGATATGAGATTTCGTGTAAGACCACGTCTGAGAC
1 TCATATAAGACCATATCTGGGATATGGCAACGATATGAGATCCCATGTAAGACCACGTCTGAGAC
86268717 ATGGCATCAAAATGAGATG
66 ATGGCATCAAAATGAGATG
* * * *
86268736 TCATATAAGACCATATCTGGGATATGTCAACGATGTGAGATCCCATGTAAGACCACGTTTGGGAC
1 TCATATAAGACCATATCTGGGATATGGCAACGATATGAGATCCCATGTAAGACCACGTCTGAGAC
86268801 ATGGC
66 ATGGC
86268806 GTTGACATCT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 58 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (84 bp):
TCATATAAGACCATATCTGGGATATGGCAACGATATGAGATCCCATGTAAGACCACGTCTGAGAC
ATGGCATCAAAATGAGATG
Found at i:86276298 original size:42 final size:42
Alignment explanation
Indices: 86276119--86276299 Score: 139
Period size: 42 Copynumber: 4.2 Consensus size: 42
86276109 ATTTGAGTTG
**
86276119 ATGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCAT
1 ATGAGATTTCGTATAAGACCATATCTGGGATATGGCATC-G-AT
* * * * *
86276163 -TGGTATGTGTTATCATGTAAGACCATATCTGGGATATGGCGTTGAT
1 AT-G-A-G-ATT-TCGTATAAGACCATATCTGGGATATGGCATCGAT
* * ** * * *
86276209 ATGAGATTTCGTGTAAGACAACGTCTGGGACATGGCATCAAA
1 ATGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGAT
* *
86276251 ATGAGATTTCGTATAATACCATATCTGGGATATGGCAACGAT
1 ATGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGAT
*
86276293 GTGAGAT
1 ATGAGAT
86276300 CCCATGTAAG
Statistics
Matches: 104, Mismatches: 27, Indels: 14
0.72 0.19 0.10
Matches are distributed among these distances:
42 64 0.62
43 3 0.03
44 2 0.02
45 2 0.02
46 4 0.04
47 3 0.03
48 26 0.25
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
ATGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGAT
Found at i:86286904 original size:13 final size:13
Alignment explanation
Indices: 86286886--86286911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86286876 AAGCAATCAT
86286886 ACACGGGCGTGTC
1 ACACGGGCGTGTC
86286899 ACACGGGCGTGTC
1 ACACGGGCGTGTC
86286912 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:86287088 original size:29 final size:29
Alignment explanation
Indices: 86287046--86287105 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
86287036 ATTACTTGAA
86287046 GAAAGCCAATTGATCCATCTCAGAAGCCG
1 GAAAGCCAATTGATCCATCTCAGAAGCCG
86287075 GAAAGCCAATTGATCCATCTCAGAAGCCG
1 GAAAGCCAATTGATCCATCTCAGAAGCCG
86287104 GA
1 GA
86287106 TTCACCTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.17
Consensus pattern (29 bp):
GAAAGCCAATTGATCCATCTCAGAAGCCG
Found at i:86293822 original size:17 final size:19
Alignment explanation
Indices: 86293789--86293824 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
86293779 TTAAATTACA
86293789 AATATATATGTATAATAAT
1 AATATATATGTATAATAAT
86293808 AATATATAT-TA-AATAAT
1 AATATATATGTATAATAAT
86293825 TTAAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
AATATATATGTATAATAAT
Found at i:86301720 original size:31 final size:31
Alignment explanation
Indices: 86301685--86301746 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
86301675 ATTAAAGATG
86301685 ATAATTTGAATATGTGATTTAAATAAATAGT
1 ATAATTTGAATATGTGATTTAAATAAATAGT
86301716 ATAATTTGAATATGTGATTTAAATAAATAGT
1 ATAATTTGAATATGTGATTTAAATAAATAGT
86301747 TTATTTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (31 bp):
ATAATTTGAATATGTGATTTAAATAAATAGT
Found at i:86301941 original size:2 final size:2
Alignment explanation
Indices: 86301934--86301960 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86301924 CTGGTATAAT
86301934 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
86301961 TGATAACCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86304882 original size:29 final size:29
Alignment explanation
Indices: 86304840--86304898 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
86304830 TAAATGCATG
86304840 CAATATTTCATACGCAAGTAATACATTAT
1 CAATATTTCATACGCAAGTAATACATTAT
86304869 CAATATTTCATACGCAAGTAATACATTAT
1 CAATATTTCATACGCAAGTAATACATTAT
86304898 C
1 C
86304899 TGAAATTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.34
Consensus pattern (29 bp):
CAATATTTCATACGCAAGTAATACATTAT
Found at i:86307724 original size:93 final size:93
Alignment explanation
Indices: 86307565--86307736 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86307555 GCCCATAAGT
* *
86307565 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86307630 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86307658 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86307723 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
86307737 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86307732 original size:46 final size:46
Alignment explanation
Indices: 86307557--86307732 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86307547 TGTAACCCGC
* * *
86307557 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86307603 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86307653 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
86307696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86307733 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86314292 original size:15 final size:15
Alignment explanation
Indices: 86314274--86314302 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
86314264 ATATTTATAA
86314274 AATTATTATTATTAT
1 AATTATTATTATTAT
86314289 AATTATTATTATTA
1 AATTATTATTATTA
86314303 GATAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:86316067 original size:8 final size:8
Alignment explanation
Indices: 86316054--86316094 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
86316044 CTAGATCGGT
86316054 AAAAGCCG
1 AAAAGCCG
*
86316062 AAAAGCCA
1 AAAAGCCG
*
86316070 AAAAGTCG
1 AAAAGCCG
*
86316078 AAAAGCTG
1 AAAAGCCG
86316086 AAAAGCCG
1 AAAAGCCG
86316094 A
1 A
86316095 CATTTGTGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.54, C:0.20, G:0.22, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:86316373 original size:27 final size:27
Alignment explanation
Indices: 86316341--86316401 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
86316331 TTTATTAAAC
* *
86316341 TACCCCTAAGTATG-AAAATTACCATTT
1 TACCCCTAAG-ATGCAAAATGACCATTA
*
86316368 TACCCCT-AGGTGCAAAATGACCATTA
1 TACCCCTAAGATGCAAAATGACCATTA
86316394 TACCCCTA
1 TACCCCTA
86316402 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.69
27 7 0.24
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (27 bp):
TACCCCTAAGATGCAAAATGACCATTA
Found at i:86318713 original size:32 final size:32
Alignment explanation
Indices: 86318672--86318740 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
86318662 AACGAGCATT
86318672 AGAATCGAGTCGGGACTTAATTGAAAACTCTA
1 AGAATCGAGTCGGGACTTAATTGAAAACTCTA
86318704 AGAATCGAGTCGGGACTTAATTGAAAACTCTA
1 AGAATCGAGTCGGGACTTAATTGAAAACTCTA
86318736 AGAAT
1 AGAAT
86318741 TTTTCGTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (32 bp):
AGAATCGAGTCGGGACTTAATTGAAAACTCTA
Found at i:86331036 original size:82 final size:82
Alignment explanation
Indices: 86330899--86331061 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
86330889 ATCGCTATTG
*
86330899 GTTAGATCTTAGGTGCAGTCTACTAGTGGTACTCAACTTCAGCTTTGGATTGGGGTTTTACTTTT
1 GTTAGATCTTAGGTGCAGTCTACTAGTGGTACTCAACTTCAGCTTTGGATTGGGGTTCTACTTTT
86330964 TTCAAAAAACCCTTTTT
66 TTCAAAAAACCCTTTTT
*
86330981 GTTAGATCTTAGGTGCAGTCTACTAGTGGTACTCGACTTCAGCTTTGGATTGGGGTTCTACTTTT
1 GTTAGATCTTAGGTGCAGTCTACTAGTGGTACTCAACTTCAGCTTTGGATTGGGGTTCTACTTTT
86331046 TTCAAAAAACCCTTTT
66 TTCAAAAAACCCTTTT
86331062 CGTCTTTCTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.40
Consensus pattern (82 bp):
GTTAGATCTTAGGTGCAGTCTACTAGTGGTACTCAACTTCAGCTTTGGATTGGGGTTCTACTTTT
TTCAAAAAACCCTTTTT
Found at i:86332245 original size:11 final size:10
Alignment explanation
Indices: 86332197--86332246 Score: 64
Period size: 11 Copynumber: 4.6 Consensus size: 10
86332187 CACAATAGTC
86332197 CTCTCACAATT
1 CTCTCA-AATT
86332208 CTCTCTAAATT
1 CTCTC-AAATT
86332219 CTCTCCAAATT
1 CTCT-CAAATT
86332230 CTCTCAAATTT
1 CTCTCAAA-TT
86332241 CTCTCA
1 CTCTCA
86332247 GTTTTTGTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
10 4 0.11
11 30 0.83
12 2 0.06
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:86332264 original size:21 final size:21
Alignment explanation
Indices: 86332240--86332279 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
86332230 CTCTCAAATT
*
86332240 TCTCTC-AGTTTTTGTCAAAGC
1 TCTCTCTAATTTTTG-CAAAGC
86332261 TCTCTCTAATTTTTGCAAA
1 TCTCTCTAATTTTTGCAAA
86332280 AAAGCTCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (21 bp):
TCTCTCTAATTTTTGCAAAGC
Found at i:86333325 original size:7 final size:7
Alignment explanation
Indices: 86333313--86333343 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
86333303 GTCGTTTCGC
86333313 ATTTAGT
1 ATTTAGT
86333320 ATTTAGT
1 ATTTAGT
*
86333327 ATTTATT
1 ATTTAGT
86333334 ATTTAGT
1 ATTTAGT
86333341 ATT
1 ATT
86333344 ACCTATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (7 bp):
ATTTAGT
Found at i:86333983 original size:18 final size:18
Alignment explanation
Indices: 86333960--86334002 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
86333950 TGCCATGTGC
*
86333960 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
86333978 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
86333996 GTTTCCT
1 GTATCCT
86334003 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:86337982 original size:6 final size:7
Alignment explanation
Indices: 86337930--86337962 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
86337920 TAAAACCTAA
86337930 AAACCCT
1 AAACCCT
86337937 AAACCACT
1 AAACC-CT
86337945 AAACCCT
1 AAACCCT
86337952 -AACCCT
1 AAACCCT
86337958 AAACC
1 AAACC
86337963 AATCAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:86340137 original size:2 final size:2
Alignment explanation
Indices: 86340130--86340164 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
86340120 AATTTTTCTT
*
86340130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86340165 GAGATTATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:86344810 original size:44 final size:44
Alignment explanation
Indices: 86344762--86345084 Score: 531
Period size: 44 Copynumber: 7.4 Consensus size: 44
86344752 CATAGGAACA
* * *
86344762 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACGGAGATG
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
86344806 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
* *
86344850 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACGGAGACA
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
*
86344894 CCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACG
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
*
86344938 CCAAATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACG
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
* * *
86344982 CCAAATCTGCTATC-TTGATCTGCTCTCCACCAATACGGAGACA
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
* *
86345025 CCAAATCTGCTATCTTTGATCTGCTCTCCGCTAATATAGAGACG
1 CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
86345069 CCAAATCTGCTATCTT
1 CCAAATCTGCTATCTT
86345085 CAACTTGTTC
Statistics
Matches: 261, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 39 0.15
44 222 0.85
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (44 bp):
CCAAATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACG
Found at i:86345601 original size:44 final size:44
Alignment explanation
Indices: 86345538--86345695 Score: 151
Period size: 44 Copynumber: 3.6 Consensus size: 44
86345528 GATTTCAATC
*
86345538 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAACTTCGAT
* * ** ** *
86345582 CTGTTTCCCTACTACTTA-GGGGTTAAGATCTGT-AAATTC-AGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAACTTCGA-T
* * * **
86345624 TTGTTACCCTGCTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAACTTCGAT
* *
86345668 CTGTTTCTCTACTGCTTAGGGGGTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
86345696 ATCTGTAAAT
Statistics
Matches: 87, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.01
42 19 0.22
43 22 0.25
44 44 0.51
45 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCAACTTCGAT
Found at i:86345686 original size:86 final size:87
Alignment explanation
Indices: 86345531--86345759 Score: 307
Period size: 87 Copynumber: 2.6 Consensus size: 87
86345521 GATACTTGAT
* *
86345531 TTCAATCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTA
1 TTCAA-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTA
86345596 CTTA-GGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
*** * * * *
86345618 TTCAGTTTGTTACCCTGCTGCTTAGGGGGTTAAGGCCCTTCGCCTTCGATCTGTTTCTCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTAC
86345683 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * ** **
86345705 TTTAACCTGTTACCCTACTGCTTAAGGAATTAAGGTTCTTCGTCTTCGATCTGTT
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTT
86345760 ACACCATTCT
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
86 55 0.45
87 66 0.55
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCTTCGTCTTCGATCTGTTTCCCTACTAC
TTAGGGGGTTAAGATCTGTAAA
Found at i:86363404 original size:60 final size:64
Alignment explanation
Indices: 86363340--86363458 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 64
86363330 AAATGAGTCC
*
86363340 AAAAAAACAACAAAAAC-AATACAACAAGA-T-T-ATAAT-AAAAACATAAGTAAAAGTCGAAGT
1 AAAAAAACAACAAAAACTAA-ACAACAACATTATAATAATAAAAAACATAAGTAAAAGTCGAAGT
* * ***
86363400 AAAAACACGAGTCAAACTAAACAACAACATTATAATAATAAAAAACATAAGTAAAAGTC
1 AAAAAAACAACAAAAACTAAACAACAACATTATAATAATAAAAAACATAAGTAAAAGTC
86363459 CAAAATATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
60 20 0.42
61 3 0.06
62 1 0.02
63 5 0.10
64 19 0.40
ACGTcount: A:0.63, C:0.13, G:0.08, T:0.16
Consensus pattern (64 bp):
AAAAAAACAACAAAAACTAAACAACAACATTATAATAATAAAAAACATAAGTAAAAGTCGAAGT
Found at i:86366063 original size:24 final size:25
Alignment explanation
Indices: 86366036--86366094 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
86366026 AGTTTTAGCA
* ** *
86366036 TTTATTTATAATTAA-TTATTTAAT
1 TTTATTTATAATAAAGTTATCAAAA
86366060 TTTATTTA-AATAAAGTTATCAAAA
1 TTTATTTATAATAAAGTTATCAAAA
86366084 TTTATTTATAA
1 TTTATTTATAA
86366095 GTCTTCTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.17
24 22 0.76
25 2 0.07
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTATTTATAATAAAGTTATCAAAA
Found at i:86366186 original size:16 final size:16
Alignment explanation
Indices: 86366165--86366196 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86366155 TTTATATCCC
86366165 GAGAATATATTAAATA
1 GAGAATATATTAAATA
86366181 GAGAATATATTAAATA
1 GAGAATATATTAAATA
86366197 TTCTCTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31
Consensus pattern (16 bp):
GAGAATATATTAAATA
Found at i:86377067 original size:27 final size:27
Alignment explanation
Indices: 86377046--86377102 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
86377036 GGAGGAAATG
*
86377046 ATTTCCCACATGAAGATTGAGGAAGCCA
1 ATTT-CCACATGAAGATTGAGGAAGACA
* *
86377074 ATTTCTACATGAAGATTGAGGAAGCCA
1 ATTTCCACATGAAGATTGAGGAAGACA
86377101 AT
1 AT
86377103 CATCTTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
ATTTCCACATGAAGATTGAGGAAGACA
Found at i:86378023 original size:87 final size:87
Alignment explanation
Indices: 86377867--86378120 Score: 303
Period size: 87 Copynumber: 2.9 Consensus size: 87
86377857 TACATGCATA
* * * * * *
86377867 AGGTTGAG-TTCTTACTCTTAATGAATTCATATCACAGGGTTTGGATGGTCCTGTTGACACGGAC
1 AGGTTGAGTTTCTTACTCTTAATGAGTTCATATCCCAGAGTTTGGGTGGTCCTATTGAGACGGAC
* ** ** **
86377931 ATGATGAATTCATGATTATGTG
66 TTGATGAATTCACCAACACATG
*
86377953 AGGTTGAGTTTCTTACTCTTAATGAGTTTATATCCCAGAGTTTGGGTGGTCCTATTGAGACGGAC
1 AGGTTGAGTTTCTTACTCTTAATGAGTTCATATCCCAGAGTTTGGGTGGTCCTATTGAGACGGAC
*
86378018 TTGATGAATTAACCAACACATG
66 TTGATGAATTCACCAACACATG
** * * * **
86378040 AGGTTGAGTTTCTTACTCCAAATGAGTTCATATCCCAAAGTTTAGGTGGTCTTATTGAGACAAAC
1 AGGTTGAGTTTCTTACTCTTAATGAGTTCATATCCCAGAGTTTGGGTGGTCCTATTGAGACGGAC
86378105 TTGATGAATTCACCAA
66 TTGATGAATTCACCAA
86378121 ACTGAAATTT
Statistics
Matches: 143, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
86 8 0.06
87 135 0.94
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (87 bp):
AGGTTGAGTTTCTTACTCTTAATGAGTTCATATCCCAGAGTTTGGGTGGTCCTATTGAGACGGAC
TTGATGAATTCACCAACACATG
Found at i:86384417 original size:40 final size:40
Alignment explanation
Indices: 86384361--86384514 Score: 177
Period size: 40 Copynumber: 3.9 Consensus size: 40
86384351 GGATATGGCG
* * * **
86384361 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TGGTA
* *
86384401 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTGGTA
* *
86384441 ACTCGCACAATTGCTTTCGGGA-ATTAACCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACA-TAACCCGGATTTGGTA
* *
86384481 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGAT
86384515 ACCATTCGAA
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 94 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTGGTA
Found at i:86391545 original size:24 final size:25
Alignment explanation
Indices: 86391514--86391560 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86391504 CTTATAACAT
* *
86391514 AAAATGACC-TTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
86391538 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
86391561 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:86391644 original size:11 final size:11
Alignment explanation
Indices: 86391608--86391663 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
86391598 CATGGTATGT
86391608 ATGATATGCAC
1 ATGATATGCAC
* *
86391619 ATGACATG--T
1 ATGATATGCAC
86391628 ATGATATGCAC
1 ATGATATGCAC
*
86391639 ATGATATG--T
1 ATGATATGCAC
86391648 ATGATATGCAC
1 ATGATATGCAC
86391659 ATGAT
1 ATGAT
86391664 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86391663 original size:20 final size:20
Alignment explanation
Indices: 86391597--86391663 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
86391587 ATTTTGATAA
*
86391597 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86391617 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86391637 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86391657 ACATGAT
1 ACATGAT
86391664 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86391791 original size:24 final size:24
Alignment explanation
Indices: 86391713--86391828 Score: 168
Period size: 23 Copynumber: 5.0 Consensus size: 24
86391703 GAGGAAGTGA
86391713 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
86391736 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
86391759 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
86391782 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
86391806 AAAAAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
86391829 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
22 12 0.14
23 37 0.43
24 37 0.43
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:86391798 original size:47 final size:45
Alignment explanation
Indices: 86391714--86391808 Score: 163
Period size: 47 Copynumber: 2.1 Consensus size: 45
86391704 AGGAAGTGAA
86391714 AAAGGGCTTATGCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
86391759 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATG-CCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
86391806 AAA
1 AAA
86391809 AAGGCTAGGC
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 12 0.26
46 10 0.21
47 25 0.53
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (45 bp):
AAAGGGCTTATGCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:86392056 original size:31 final size:31
Alignment explanation
Indices: 86392021--86392084 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
86392011 CGTTTACAGT
86392021 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
86392052 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86392083 AA
1 AA
86392085 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:86399622 original size:25 final size:25
Alignment explanation
Indices: 86399593--86399640 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86399583 TTATAACATG
* * *
86399593 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
86399618 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
86399641 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:86399724 original size:11 final size:11
Alignment explanation
Indices: 86399688--86399743 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
86399678 CATGGTATGT
86399688 ATGATATGCAC
1 ATGATATGCAC
* *
86399699 ATGACATG--T
1 ATGATATGCAC
86399708 ATGATATGCAC
1 ATGATATGCAC
*
86399719 ATGATATG--T
1 ATGATATGCAC
86399728 ATGATATGCAC
1 ATGATATGCAC
86399739 ATGAT
1 ATGAT
86399744 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86399743 original size:20 final size:20
Alignment explanation
Indices: 86399677--86399743 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
86399667 ATTTTGATAA
*
86399677 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86399697 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86399717 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86399737 ACATGAT
1 ACATGAT
86399744 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86399820 original size:25 final size:24
Alignment explanation
Indices: 86399793--86399864 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
86399783 GAGGAAGTGA
86399793 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
86399817 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
86399841 CAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
86399865 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 31 0.74
25 11 0.26
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:86400093 original size:31 final size:31
Alignment explanation
Indices: 86400058--86400121 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
86400048 CATTTACAGT
86400058 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
86400089 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86400120 AA
1 AA
86400122 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:86403807 original size:36 final size:37
Alignment explanation
Indices: 86403719--86403810 Score: 109
Period size: 36 Copynumber: 2.5 Consensus size: 37
86403709 CACCACTTCG
* *
86403719 TCCACCTTGCACACCACATTAGGGCTATAGTAGGCCCA
1 TCCACCTT-CACACCACATTAGGACCATAGTAGGCCCA
86403757 TCCATCCTGT-ACACCACA-TAGGACCATA-TAGGCCCA
1 TCCA-CCT-TCACACCACATTAGGACCATAGTAGGCCCA
86403793 TCCACCTTACACACCACA
1 TCCACCTT-CACACCACA
86403811 AATGTGGAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
34 1 0.02
35 3 0.06
36 20 0.42
37 8 0.17
38 12 0.25
39 3 0.06
40 1 0.02
ACGTcount: A:0.29, C:0.38, G:0.13, T:0.20
Consensus pattern (37 bp):
TCCACCTTCACACCACATTAGGACCATAGTAGGCCCA
Found at i:86407353 original size:4 final size:4
Alignment explanation
Indices: 86407336--86407416 Score: 63
Period size: 4 Copynumber: 19.8 Consensus size: 4
86407326 CCCTTTTCTA
* ** * * * **
86407336 TTTC TTTA TTTC TTTC TTTC TTTC TTTC TCAC GTTTGC TCTC TGTA ACTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC TTTC TTTC
*
86407386 TTTC TATC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
86407417 TTTAACTTAC
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
4 55 0.93
5 3 0.05
6 1 0.02
ACGTcount: A:0.06, C:0.25, G:0.04, T:0.65
Consensus pattern (4 bp):
TTTC
Found at i:86407993 original size:20 final size:20
Alignment explanation
Indices: 86407945--86408008 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
86407935 AACCTGTTTG
86407945 AAAATCATTTTGA--TGTGTT
1 AAAATCATTTTGACTTG-GTT
*
86407964 AAAATGATTTT-ATCTTGGTT
1 AAAATCATTTTGA-CTTGGTT
*
86407984 GAAATCATTTTGACTTGGTT
1 AAAATCATTTTGACTTGGTT
86408004 AAAAT
1 AAAAT
86408009 TTGAAGTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
18 1 0.03
19 10 0.27
20 23 0.62
21 3 0.08
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.45
Consensus pattern (20 bp):
AAAATCATTTTGACTTGGTT
Found at i:86408674 original size:58 final size:60
Alignment explanation
Indices: 86408609--86408725 Score: 184
Period size: 61 Copynumber: 2.0 Consensus size: 60
86408599 TAATCACTAA
*
86408609 TATTAAATTAATATAATAATTA-T-CAAGATAAATATTAAATTCAATTTAATATTAAAAC
1 TATTAAATTAATAGAATAATTACTACAAGATAAATATTAAATTCAATTTAATATTAAAAC
* *
86408667 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTTAATTTAATATTAAA
1 TATTAAATTAATAGAATAATTA-CTACAAGATAAATATTAAATTCAATTTAATATTAAA
86408726 TTAACAAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
58 20 0.38
60 1 0.02
61 32 0.60
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (60 bp):
TATTAAATTAATAGAATAATTACTACAAGATAAATATTAAATTCAATTTAATATTAAAAC
Found at i:86408764 original size:48 final size:51
Alignment explanation
Indices: 86408667--86408774 Score: 141
Period size: 48 Copynumber: 2.2 Consensus size: 51
86408657 ATATTAAAAC
* * * *
86408667 TATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTTAATTTAA
1 TATTAAATTAACAAAATACTTA-CTACAAGATAAATATCAAATTAAATTTAA
*
86408719 TATTAAATTAACAAAATAC-TA-TA-AAGATAAGTATCAAATTAAATTTAA
1 TATTAAATTAACAAAATACTTACTACAAGATAAATATCAAATTAAATTTAA
86408767 TATTAAAT
1 TATTAAAT
86408775 CTATTAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 30 0.59
49 2 0.04
51 2 0.04
52 17 0.33
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (51 bp):
TATTAAATTAACAAAATACTTACTACAAGATAAATATCAAATTAAATTTAA
Found at i:86409071 original size:18 final size:19
Alignment explanation
Indices: 86409048--86409083 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
86409038 CTTCGCATAC
86409048 TAGAC-TAGTTTTGGGTTT
1 TAGACTTAGTTTTGGGTTT
86409066 TAGACTTAGTTTTGGGTT
1 TAGACTTAGTTTTGGGTT
86409084 CTCGGACCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.17, C:0.06, G:0.28, T:0.50
Consensus pattern (19 bp):
TAGACTTAGTTTTGGGTTT
Found at i:86409240 original size:14 final size:13
Alignment explanation
Indices: 86409221--86409259 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
86409211 TACTTTATCA
86409221 AAATTAATTTTCCC
1 AAATTAATTTT-CC
*
86409235 AAATTAGATTTTCT
1 AAATTA-ATTTTCC
86409249 AAATTAATTTT
1 AAATTAATTTT
86409260 TCAAGAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 5 0.22
14 13 0.57
15 5 0.22
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (13 bp):
AAATTAATTTTCC
Found at i:86410052 original size:23 final size:23
Alignment explanation
Indices: 86410022--86410079 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
86410012 CGTCACAAGT
86410022 GAATTAATTCATAAATGGATTCA
1 GAATTAATTCATAAATGGATTCA
86410045 GAATTAATTCATAAATGGATTCA
1 GAATTAATTCATAAATGGATTCA
86410068 GAATTAATTCAT
1 GAATTAATTCAT
86410080 CTTGGGTCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (23 bp):
GAATTAATTCATAAATGGATTCA
Found at i:86417132 original size:19 final size:19
Alignment explanation
Indices: 86417108--86417144 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86417098 ATCTAAAAAT
86417108 ATAAAAAAATAAAAATAAC
1 ATAAAAAAATAAAAATAAC
* *
86417127 ATAAAATAATGAAAATAA
1 ATAAAAAAATAAAAATAA
86417145 AAATAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (19 bp):
ATAAAAAAATAAAAATAAC
Found at i:86425189 original size:18 final size:17
Alignment explanation
Indices: 86425153--86425195 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
86425143 AAATTTTTTC
86425153 ATAAATATTTTTAAAAA
1 ATAAATATTTTTAAAAA
86425170 ATAAA-ATTTTTAAAGTAA
1 ATAAATATTTTTAAA--AA
86425188 ATAAATAT
1 ATAAATAT
86425196 ATCAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 9 0.39
17 5 0.22
18 7 0.30
19 2 0.09
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
ATAAATATTTTTAAAAA
Found at i:86426026 original size:27 final size:27
Alignment explanation
Indices: 86425972--86426022 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
86425962 CATCCCATTA
*
86425972 AAAAATAATTTTATATCAATATTAAAT
1 AAAAATAATTGTATATCAATATTAAAT
86425999 AAAAATAATTGTAT-T-AATATTAAA
1 AAAAATAATTGTATATCAATATTAAA
86426023 AATATCCCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 9 0.39
26 1 0.04
27 13 0.57
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (27 bp):
AAAAATAATTGTATATCAATATTAAAT
Found at i:86432470 original size:43 final size:42
Alignment explanation
Indices: 86432412--86432521 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
86432402 CAATGCCAAC
** *
86432412 ATCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-ATT
1 ATCCCAGACAAGGTCTTACACGTAATCAAATA-CGATGCCGA-T
* *
86432455 ATCCCAGATAAGGTCTTACACGAAATCAAATACGATGCCGAT
1 ATCCCAGACAAGGTCTTACACGTAATCAAATACGATGCCGAT
* *
86432497 GTCCCAGACATGGTCTTACACGTAA
1 ATCCCAGACAAGGTCTTACACGTAA
86432522 ATCTCAAATT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 29 0.51
43 28 0.49
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
ATCCCAGACAAGGTCTTACACGTAATCAAATACGATGCCGAT
Found at i:86432524 original size:43 final size:41
Alignment explanation
Indices: 86432412--86432568 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 41
86432402 CAATGCCAAC
* * *
86432412 ATCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATT
1 ATCCCAGACATGGTCTTACACGAAATCAAATA-CGATGCCA-T
* *
86432455 ATCCCAGATAAGGTCTTACACGAAATCAAATACGATGCCGAT
1 ATCCCAGACATGGTCTTACACGAAATCAAATACGATGCC-AT
* * *
86432497 GTCCCAGACATGGTCTTACACGTAAATCTCAAAT-TGATGCCAAC
1 ATCCCAGACATGGTCTTACACG-AAA--TCAAATACGATGCC-AT
* *
86432541 ATCCCAAACGTGGTCTTACACGAAATCA
1 ATCCCAGACATGGTCTTACACGAAATCA
86432569 CATATAGGAA
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 34 0.35
44 26 0.27
45 6 0.06
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (41 bp):
ATCCCAGACATGGTCTTACACGAAATCAAATACGATGCCAT
Found at i:86432944 original size:8 final size:8
Alignment explanation
Indices: 86432933--86432965 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
86432923 TAATTAGCCC
86432933 TCACATTT
1 TCACATTT
86432941 TCACATTT
1 TCACATTT
86432949 TCACATTT
1 TCACATTT
*
86432957 TAACATTT
1 TCACATTT
86432965 T
1 T
86432966 AGTCCCTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:86437302 original size:2 final size:2
Alignment explanation
Indices: 86437295--86437340 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
86437285 AAAACAAGCA
*
86437295 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
86437337 AG AG
1 AG AG
86437341 GAAAAGCTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:86444420 original size:9 final size:9
Alignment explanation
Indices: 86444406--86444455 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
86444396 ATAAGTATAA
86444406 AATTAACCG
1 AATTAACCG
*
86444415 AATTAACCA
1 AATTAACCG
*
86444424 AATTAATCG
1 AATTAACCG
*
86444433 AATTACCCG
1 AATTAACCG
86444442 AATTAACCG
1 AATTAACCG
86444451 AATTA
1 AATTA
86444456 TTTGTATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.20, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:86444489 original size:5 final size:6
Alignment explanation
Indices: 86444474--86444514 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
86444464 AAATTATATG
*
86444474 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
86444515 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:86445637 original size:48 final size:48
Alignment explanation
Indices: 86445558--86445882 Score: 367
Period size: 48 Copynumber: 6.8 Consensus size: 48
86445548 GAGGGTAAAT
* * * *
86445558 TGCCGATTCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
*
86445606 TGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCGT-ACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCAA
* *
86445654 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* * * *
86445702 CGTCGATTCCATGTCCCAGACATGGTCTTACACTAG-TGCACCTATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATATCAA
* * *
86445750 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT--CTTAT-AA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* * * *
86445795 TGTGGCCGATGCCATGTCCCAGAGATGGTCTTACACTGGCTCTCATA--ATG
1 --T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA-A
*
86445845 TGGCCGATGCCATGTCCCAGACATGGTCTTATACTAGC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
86445883 GTATATATCA
Statistics
Matches: 240, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
45 2 0.01
46 4 0.02
47 1 0.00
48 227 0.95
49 3 0.01
50 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
Found at i:86457620 original size:6 final size:6
Alignment explanation
Indices: 86457609--86457649 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
86457599 GGAGACTCAC
86457609 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCT
1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG CTCCT
86457650 ATAACTATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.15, T:0.34
Consensus pattern (6 bp):
CTCCTG
Found at i:86459258 original size:7 final size:7
Alignment explanation
Indices: 86459246--86459275 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
86459236 TATTTCTTCC
86459246 TCTTTTT
1 TCTTTTT
86459253 TCTTTTT
1 TCTTTTT
86459260 TCTTTTT
1 TCTTTTT
*
86459267 TTTTTTT
1 TCTTTTT
86459274 TC
1 TC
86459276 ACACAGCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TCTTTTT
Found at i:86460909 original size:16 final size:17
Alignment explanation
Indices: 86460888--86460921 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
86460878 ATTATTTGGA
86460888 ATTAGGTT-ATTCAATT
1 ATTAGGTTGATTCAATT
86460904 ATTAGGTTGGATTCAATT
1 ATTAGGTT-GATTCAATT
86460922 TAAATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (17 bp):
ATTAGGTTGATTCAATT
Found at i:86462714 original size:48 final size:48
Alignment explanation
Indices: 86462534--86462869 Score: 275
Period size: 48 Copynumber: 7.0 Consensus size: 48
86462524 ACCATGGCGA
* * * *
86462534 TATGAGAGTCAGTGTAAGACCATGTCTGGGACATAGCATCGGTC-TCGA
1 TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGT
* * ** **
86462582 TATGT--GTCAATGTAAGACCATGTCTAGGACATGGCATCATCACCGGT
1 TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTGT
* * * * * *
86462629 ATATGCGAGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGTATTGT
1 -TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGT
* * * **
86462678 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTAA
1 TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGT
* * * * *
86462726 TATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGT
1 TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGT
* * * * **
86462774 TA-GATGTGTCGGTGTAAGAACATGTCTAGGACATGGCATCGGCACCGAT
1 TATG-TGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-T
* * *
86462823 GTATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATT
1 -TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
86462870 TTACCCTTTT
Statistics
Matches: 221, Mismatches: 58, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
45 1 0.00
46 30 0.14
47 2 0.01
48 121 0.55
49 3 0.01
50 63 0.29
51 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGT
Found at i:86462868 original size:98 final size:97
Alignment explanation
Indices: 86462533--86462869 Score: 353
Period size: 96 Copynumber: 3.5 Consensus size: 97
86462523 GACCATGGCG
* * * * * *
86462533 ATATGAGAGTCAGTGTAAGACCATGTCTGGGACATAGCATCGGTC-TCG--ATATGTGTCAATGT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGG-CATTGTTAGATGTGTCAGTGT
* *
86462595 AAGACCATGTCTAGGACATGGCATCATCACCGGT
65 AAGACCATGTCTAGGACATGGCATC-GCACCGAT
* * * * * *
86462629 ATATGCGAGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGTATTGTTATG-TGAGCCAGTGT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTA-GATGTGTCAGTGT
* *
86462693 AAGACCATGTCTGGGACATGGCATCG-ACC-TT
65 AAGACCATGTCTAGGACATGGCATCGCACCGAT
* * * *
86462724 AATATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTAGATGTGTCGGTGT
1 -ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTAGATGTGTCAGTGT
*
86462789 AAGAACATGTCTAGGACATGGCATCGGCACCGAT
65 AAGACCATGTCTAGGACATGGCATC-GCACCGAT
* ** * *
86462823 GTATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATT
86462870 TTACCCTTTT
Statistics
Matches: 202, Mismatches: 30, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
95 2 0.01
96 121 0.60
97 1 0.00
98 77 0.38
99 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (97 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTAGATGTGTCAGTGTA
AGACCATGTCTAGGACATGGCATCGCACCGAT
Found at i:86464977 original size:20 final size:20
Alignment explanation
Indices: 86464949--86464987 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
86464939 TTAACAATAA
* *
86464949 TAATAATAATATATATAATG
1 TAATAATAAAAAATATAATG
*
86464969 TAATCATAAAAAATATAAT
1 TAATAATAAAAAATATAAT
86464988 TGGCGATGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TAATAATAAAAAATATAATG
Found at i:86467138 original size:83 final size:83
Alignment explanation
Indices: 86466704--86467121 Score: 755
Period size: 83 Copynumber: 5.0 Consensus size: 83
86466694 TTCGATTTGT
* * * *
86466704 AAGGATGTCAAATCATCTTGAGTCTATTTGAGAACATTTGAAAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
86466769 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
86466787 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
86466852 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
86466870 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTTATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
86466935 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
86466953 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
86467018 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
86467036 AAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
* *
86467101 TTTGTTCCTGGTAAACAC
66 TTTGTTCCTTGTAAGCAC
86467119 AAG
1 AAG
86467122 AATATCAAAT
Statistics
Matches: 324, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 324 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:86467282 original size:119 final size:119
Alignment explanation
Indices: 86467076--86467296 Score: 336
Period size: 119 Copynumber: 1.9 Consensus size: 119
86467066 AGAACATTTG
* *
86467076 AGAGTCATATCTGCAATGTCCTCGATTTGTTCCTGGTAAACACAAGAATATCAAATCATCTTGGA
1 AGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTGGTAAACACAAGAATACCAAATCATCTTGGA
* *
86467141 TCTATTTCAGTATAAACATCTGAAGGT-TAGATCTGCTATATTTGAGAACGTCTA
66 TCTACTTCAGCATAAACATCTGAA-GTCTAGATCTGCTATATTTGAGAACGTCTA
* * *
86467195 AGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGA
1 AGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTGGTAAACACAAGAATACCAAATCATCTTGGA
* **
86467260 TCTGCTTCAGCATAAATGTCTGAAGTCTAGATCTGCT
66 TCTACTTCAGCATAAACATCTGAAGTCTAGATCTGCT
86467297 GTCTTCAATT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
118 2 0.02
119 89 0.98
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (119 bp):
AGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTGGTAAACACAAGAATACCAAATCATCTTGGA
TCTACTTCAGCATAAACATCTGAAGTCTAGATCTGCTATATTTGAGAACGTCTA
Found at i:86485652 original size:14 final size:14
Alignment explanation
Indices: 86485632--86485678 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
86485622 GACTTGGATT
86485632 TTTTTTATTTTTCTG
1 TTTTTTATTTTT-TG
*
86485647 -TTTTTATATTTTG
1 TTTTTTATTTTTTG
*
86485660 TTTATTTATTTTTGG
1 TTT-TTTATTTTTTG
86485675 TTTT
1 TTTT
86485679 GGGCTAGACG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 2 0.07
14 13 0.48
15 12 0.44
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.79
Consensus pattern (14 bp):
TTTTTTATTTTTTG
Found at i:86485922 original size:44 final size:44
Alignment explanation
Indices: 86485851--86486216 Score: 191
Period size: 44 Copynumber: 8.0 Consensus size: 44
86485841 AACTTCAGGG
* * * * *
86485851 GTAGTTTCAATCTACTCCGCTGCAACTTCAGGGAGATGAGATTC
1 GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGAGATTC
* * * * *
86485895 GTAGCTTCAATTTGCTCTACTACAACTTCAGAGAAATAAGATTT
1 GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGAGATTC
* * * *
86485939 GTAGCTTTAATCTGTTCCACTGCAACTTCAGAGAGATGAGACTCGCTATG
1 GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGAGA-----T-TC
* * * * * *
86485989 GTAGATTTAACCTGAC-CCACTGCAACTTCAGAG-GTATAAGATTT
1 GTAGCTTCAATCTG-CTCCACTACAACTTCAGAGAG-ATGAGATTC
* * *
86486033 GTCA-CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT-ATGATTT
1 GT-AGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGA-GATTC
* * ** * * *
86486077 ATAGCTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAAGATTTGTTGTT
1 GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGAT---GA---GAT-TC
* * * * * *
86486128 GTAGCTTCAATCTACTCCACTAAAACTTTAGGGAGATAAGATTT
1 GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGAGATTC
* * * *
86486172 GTAGCTTTAATCTGCTCCACTACAACTTTAGGGAGATAAGATTC
1 GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGAGATTC
86486216 G
1 G
86486217 CTATGGTCGA
Statistics
Matches: 259, Mismatches: 43, Indels: 40
0.76 0.13 0.12
Matches are distributed among these distances:
43 3 0.01
44 176 0.68
45 5 0.02
48 2 0.01
49 2 0.01
50 38 0.15
51 33 0.13
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
GTAGCTTCAATCTGCTCCACTACAACTTCAGAGAGATGAGATTC
Found at i:86486155 original size:51 final size:50
Alignment explanation
Indices: 86486078--86486173 Score: 138
Period size: 51 Copynumber: 1.9 Consensus size: 50
86486068 ATATGATTTA
* **
86486078 TAGCTTCAACCTGCTCCACTGTAACTTCAGGGAGATAAAGATTTGTTGTTG
1 TAGCTTCAACCTACTCCACTAAAACTTCAGGGAGAT-AAGATTTGTTGTTG
* *
86486129 TAGCTTCAATCTACTCCACTAAAACTTTAGGGAGATAAGATTTGT
1 TAGCTTCAACCTACTCCACTAAAACTTCAGGGAGATAAGATTTGT
86486174 AGCTTTAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 9 0.22
51 31 0.77
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (50 bp):
TAGCTTCAACCTACTCCACTAAAACTTCAGGGAGATAAGATTTGTTGTTG
Found at i:86486155 original size:95 final size:94
Alignment explanation
Indices: 86486037--86486214 Score: 248
Period size: 95 Copynumber: 1.9 Consensus size: 94
86486027 AGATTTGTCA
* ** * **
86486037 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATATGATTTATAGCTTCAACCTGCTCCACTGTAA
1 CTTCAATCTACTCCACTAAAACTTCAGGGAGATAAGATTTATAGCTTCAACCTGCTCCACTACAA
86486102 CTTCAGGGAGATAAAGATTTGTTGTTGTAG
66 CTTCAGGGAGAT-AAGATTTGTTGTTGTAG
* * * *
86486132 CTTCAATCTACTCCACTAAAACTTTAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTACAA
1 CTTCAATCTACTCCACTAAAACTTCAGGGAGATAAGATTTATAGCTTCAACCTGCTCCACTACAA
*
86486197 CTTTAGGGAGATAAGATT
66 CTTCAGGGAGATAAGATT
86486215 CGCTATGGTC
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 6 0.08
95 66 0.92
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (94 bp):
CTTCAATCTACTCCACTAAAACTTCAGGGAGATAAGATTTATAGCTTCAACCTGCTCCACTACAA
CTTCAGGGAGATAAGATTTGTTGTTGTAG
Found at i:86490000 original size:40 final size:40
Alignment explanation
Indices: 86489945--86490154 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86489935 AACATTGGAA
86489945 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86489985 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86490025 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
86490065 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
86490104 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
86490145 CTATATCCGG
1 ATATATCCGG
86490155 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:86498139 original size:40 final size:40
Alignment explanation
Indices: 86498084--86498293 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
86498074 AACATTGGAA
86498084 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86498124 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
86498164 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
86498204 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
86498243 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
86498284 CTATATCCGG
1 ATATATCCGG
86498294 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:86503792 original size:49 final size:47
Alignment explanation
Indices: 86503668--86504065 Score: 188
Period size: 38 Copynumber: 8.8 Consensus size: 47
86503658 AGGGTATAAT
* *
86503668 GCCGATGCCGTGTCCCAAACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCAATCAA
* * *
86503715 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATC--AATC-AA
* * * **
86503764 GCCGACGCCATGTCTCAAACATGGTCTTACACTAGCTC-TCACATATCCGT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT--CA-AT-CAA
* * * * * *
86503814 GACGATGCCATGTACCAGACATGGTCTTACACTAGCACATC--TCGTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCAATC-AA
* * ** *
86503860 GCCAAT-ACATGTCCCAGGCAT-GTCTTACACTGGCTTACATC--TCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC-T-CATCAATC-AA
* * * **
86503906 GCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATC-AATCAA
* *
86503951 TGCCGATGCCATGTCCCAAACATGG-C---CTCTCG-TC-TCAAT---
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCAATCAA
* *
86503990 GCCGATGCCATGTCCCAAACATGGCCTT----TCG-TC-TCAAT---
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCAATCAA
* *
86504028 GCCGATGCCATGTCCCAGACATGGCCTTACACTGGCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
86504066 TCATAATGTG
Statistics
Matches: 282, Mismatches: 42, Indels: 58
0.74 0.11 0.15
Matches are distributed among these distances:
38 61 0.22
39 1 0.00
42 3 0.01
43 8 0.03
44 17 0.06
45 15 0.05
46 53 0.19
47 47 0.17
48 4 0.01
49 36 0.13
50 34 0.12
51 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCAATCAA
Found at i:86503839 original size:50 final size:48
Alignment explanation
Indices: 86503670--86503849 Score: 145
Period size: 49 Copynumber: 3.7 Consensus size: 48
86503660 GGTATAATGC
* * * * * *
86503670 CGATGCCGTGTCCCAAACATGGTCTTACACTGGCTCATC--CATC-AAGT
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGCT-ATCGAAATCGAGGA
* *
86503717 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGAAATCGAGGC
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGCTATCGAAATCGAGGA
* * * *
86503766 CGACGCCATGTCTCAAACATGGTCTTACACTAGCTCTC-ACATATCCG-TGA
1 CGATGCCATGTC-CAGACATGGTCTTACACTAGCTATCGA-A-AT-CGAGGA
86503816 CGATGCCATGTACCAGACATGGTCTTACACTAGC
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGC
86503850 ACATCTCGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
46 3 0.03
47 33 0.29
48 5 0.04
49 35 0.31
50 33 0.29
51 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (48 bp):
CGATGCCATGTCCAGACATGGTCTTACACTAGCTATCGAAATCGAGGA
Found at i:86503839 original size:99 final size:96
Alignment explanation
Indices: 86503668--86503846 Score: 245
Period size: 96 Copynumber: 1.8 Consensus size: 96
86503658 AGGGTATAAT
* * * *
86503668 GCCGATGCCGTGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAG
1 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTACCAG
86503733 ACATGGTCTTACACTGGCTATCGAAATCGAG
66 ACATGGTCTTACACTGGCTATCGAAATCGAG
* *
86503764 GCCGACGCCATGTCTCAAACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGACGATGCCATGT
1 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCATC-CATCA--AGT--CGATGCCATGT
86503827 ACCAGACATGGTCTTACACT
61 ACCAGACATGGTCTTACACT
86503847 AGCACATCTC
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
95 3 0.04
96 37 0.51
97 2 0.03
99 30 0.42
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (96 bp):
GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTACCAG
ACATGGTCTTACACTGGCTATCGAAATCGAG
Found at i:86503917 original size:46 final size:48
Alignment explanation
Indices: 86503668--86503975 Score: 228
Period size: 46 Copynumber: 6.5 Consensus size: 48
86503658 AGGGTATAAT
* * * *
86503668 GCCGATGCCGTGTCCCAAACATGGTCTTACACTGGC-T-CATCCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACAT-C-TCGAG
* * **
86503715 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTA-C-ATCTCGAG
* * * * *
86503764 GCCGACGCCATGTCTCAAACATGGTCTTACACTAGCTCTCACATATCCG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CGAG
* *
86503814 GACGATGCCATGTACCAGACATGGTCTTACACTAGC--ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCG-AG
* * * *
86503860 GCCAAT-ACATGTCCCAGGCAT-GTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAG
* * * *
86503906 GCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCGAG
*
86503952 GCCGATGCCATGTCCCAAACATGG
1 GCCGATGCCATGTCCCAGACATGG
86503976 CCTCTCGTCT
Statistics
Matches: 210, Mismatches: 34, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.06
45 15 0.07
46 60 0.29
47 47 0.22
48 3 0.01
49 33 0.16
50 35 0.17
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAG
Found at i:86503982 original size:38 final size:38
Alignment explanation
Indices: 86503939--86504054 Score: 214
Period size: 38 Copynumber: 3.1 Consensus size: 38
86503929 CTTACACTAG
86503939 CTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGC
1 CTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGC
86503977 CTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGC
1 CTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGC
* *
86504015 CTTTCGTCTCAATGCCGATGCCATGTCCCAGACATGGC
1 CTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGC
86504053 CT
1 CT
86504055 TACACTGGCT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.20, C:0.36, G:0.19, T:0.25
Consensus pattern (38 bp):
CTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGC
Found at i:86506075 original size:3 final size:3
Alignment explanation
Indices: 86506067--86506112 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
86506057 AAGAAAGATA
86506067 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
86506113 GTGTAAATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:86506188 original size:12 final size:11
Alignment explanation
Indices: 86506162--86506195 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
86506152 TAAAAAAGGG
*
86506162 TAAAGAAATAA
1 TAAATAAATAA
86506173 TAAATAAATGAA
1 TAAATAAAT-AA
86506185 TAAATAAATAA
1 TAAATAAATAA
86506196 AGTTCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (11 bp):
TAAATAAATAA
Found at i:86507603 original size:14 final size:14
Alignment explanation
Indices: 86507577--86507623 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
86507567 ACTTGGATTT
86507577 TTTTTTATTTTTTGG
1 TTTTTTA-TTTTTGG
86507592 TTTTTGTA-TTTT-G
1 TTTTT-TATTTTTGG
86507605 TTTATTTATTTTTGG
1 TTT-TTTATTTTTGG
86507620 TTTT
1 TTTT
86507624 GGGCCGGACG
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
13 6 0.21
14 11 0.39
15 9 0.32
16 2 0.07
ACGTcount: A:0.09, C:0.00, G:0.13, T:0.79
Consensus pattern (14 bp):
TTTTTTATTTTTGG
Found at i:86509959 original size:3 final size:3
Alignment explanation
Indices: 86509946--86509989 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
86509936 GTTTCATTTC
86509946 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
86509990 ACACTTATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:86513767 original size:94 final size:94
Alignment explanation
Indices: 86513605--86513808 Score: 318
Period size: 94 Copynumber: 2.2 Consensus size: 94
86513595 TTAAGGCTTG
* * * *
86513605 CTGATTTACGATCACAGCCTAAGTTCATTTATTTATGATCATGAACAATCTTCTATGAGTTAACT
1 CTGATTTATGATCACAGCCTAAGTTCATTGATTTACGATCATGAACAATCTTCTATGAGTGAACT
* * *
86513670 GATTTACTATCACTACTTCAAACAATTCG
66 GATTTACTATCACTACTCCAAACAACTCA
* * *
86513699 TTGATTTATGATCACAGCCTAAGTTCATTGATTTACGATCATGAACAATTTTCTATGAGTGACCT
1 CTGATTTATGATCACAGCCTAAGTTCATTGATTTACGATCATGAACAATCTTCTATGAGTGAACT
86513764 GATTTACTATCACTACTCCAAACAACTCA
66 GATTTACTATCACTACTCCAAACAACTCA
86513793 CTGATTTATGATCACA
1 CTGATTTATGATCACA
86513809 ACTGATATTA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 99 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (94 bp):
CTGATTTATGATCACAGCCTAAGTTCATTGATTTACGATCATGAACAATCTTCTATGAGTGAACT
GATTTACTATCACTACTCCAAACAACTCA
Found at i:86530531 original size:19 final size:20
Alignment explanation
Indices: 86530486--86530532 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 20
86530476 CTTAAAATTT
86530486 TTTTAATAGGTGTAAAAAAATA
1 TTTTAATAGGTG--AAAAAATA
*
86530508 ATTTAATAGGTG-AAAAATA
1 TTTTAATAGGTGAAAAAATA
86530527 TTTTAA
1 TTTTAA
86530533 CGGGTATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 12 0.52
22 11 0.48
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
TTTTAATAGGTGAAAAAATA
Found at i:86531636 original size:15 final size:14
Alignment explanation
Indices: 86531580--86531681 Score: 57
Period size: 14 Copynumber: 7.1 Consensus size: 14
86531570 TTATTATGTT
*
86531580 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
86531594 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
86531608 TACTATTCTTATTTA
1 T-CTATTTTTATTTA
86531623 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
86531638 TCTATTTATATTTC
1 TCTATTTTTATTTA
* *
86531652 TACTATTATTACATT-
1 T-CTATTTTTA-TTTA
*
86531667 TCTATTTCTATTTA
1 TCTATTTTTATTTA
86531681 T
1 T
86531682 ATACTAATAT
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
12 6 0.09
13 4 0.06
14 23 0.34
15 23 0.34
16 4 0.06
17 7 0.10
ACGTcount: A:0.25, C:0.11, G:0.01, T:0.63
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:86531649 original size:29 final size:28
Alignment explanation
Indices: 86531580--86531650 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
86531570 TTATTATGTT
86531580 TCTATTTATATTTATTTTGTTATTCTAA
1 TCTATTTATATTTATTTTGTTATTCTAA
*
86531608 TACTATTCT-TATTTATCTAATTTTTATT-T-A
1 T-CTATT-TATATTTAT-T--TTGTTATTCTAA
86531638 TCTATTTATATTT
1 TCTATTTATATTT
86531651 CTACTATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
28 2 0.06
29 22 0.61
30 4 0.11
31 1 0.03
32 7 0.19
ACGTcount: A:0.25, C:0.08, G:0.01, T:0.65
Consensus pattern (28 bp):
TCTATTTATATTTATTTTGTTATTCTAA
Found at i:86531820 original size:3 final size:3
Alignment explanation
Indices: 86531812--86531976 Score: 119
Period size: 3 Copynumber: 55.7 Consensus size: 3
86531802 TTTAAAAATT
86531812 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* ** * *
86531859 TT- TCTA TTTA TGTA TTA ATA CCA ATA TT- TT- TTA TT- TTT TTA -TA
1 TTA T-TA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * *
86531902 TTA TTA TTA TTA TCG TTA TTA TTA CTA TTA GTA CTA TTA TTA TTT TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
86531951 TTA TTA TTA CTA GTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
86531977 TATAGTATAT
Statistics
Matches: 130, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
2 12 0.09
3 109 0.84
4 8 0.06
5 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:86531991 original size:49 final size:50
Alignment explanation
Indices: 86531888--86531991 Score: 117
Period size: 49 Copynumber: 2.1 Consensus size: 50
86531878 ACCAATATTT
* * *
86531888 TTTATTTTTTTATATTATTATTATTATCGTTATTATTACTATTAGTACTA
1 TTTATTATTTTATATTATTATTACTATCATTATTATTACTATTAGTACTA
* *
86531938 -TTATTATTTTCTATTATTATTACTAGT-ATTATTATTA-TTTATAGTA-TA
1 TTTATTATTTTATATTATTATTACTA-TCATTATTATTACTAT-TAGTACTA
86531986 TTTATT
1 TTTATT
86531992 CACAAATTGC
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
48 4 0.09
49 41 0.89
50 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (50 bp):
TTTATTATTTTATATTATTATTACTATCATTATTATTACTATTAGTACTA
Found at i:86533593 original size:13 final size:13
Alignment explanation
Indices: 86533575--86533603 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
86533565 CTGGACTTCC
86533575 TCACACGGGCGTG
1 TCACACGGGCGTG
86533588 TCACACGGGCGTG
1 TCACACGGGCGTG
86533601 TCA
1 TCA
86533604 ATTTGGCAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:86539086 original size:11 final size:11
Alignment explanation
Indices: 86539070--86539098 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
86539060 CTTATTCTTA
86539070 AAAAAAAAAAG
1 AAAAAAAAAAG
86539081 AAAAAAAAAAG
1 AAAAAAAAAAG
86539092 AAAAAAA
1 AAAAAAA
86539099 CAACAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:86541151 original size:26 final size:26
Alignment explanation
Indices: 86541115--86541169 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
86541105 TAGTAGAGGC
*
86541115 ATCCATTGGGAAGTTTGCGAGATTTG
1 ATCCATTGGGAAGTTCGCGAGATTTG
86541141 ATCCATTGGGAAGTTCGCGAGATTTG
1 ATCCATTGGGAAGTTCGCGAGATTTG
86541167 ATC
1 ATC
86541170 TTAACATCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.33
Consensus pattern (26 bp):
ATCCATTGGGAAGTTCGCGAGATTTG
Found at i:86543010 original size:27 final size:28
Alignment explanation
Indices: 86542980--86543049 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
86542970 ATAATAAGTC
*
86542980 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
86543007 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
86543035 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86543050 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86550930 original size:27 final size:28
Alignment explanation
Indices: 86550900--86550969 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
86550890 ATAATAAGTC
*
86550900 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
86550927 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
86550955 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86550970 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86554460 original size:23 final size:23
Alignment explanation
Indices: 86554417--86554460 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
86554407 TAGATTCTTT
*
86554417 TATTCTTTAGACTTTCTTTCAAG
1 TATTCTTTAGACTTTCATTCAAG
*
86554440 TATTCTTTTAGTC-TTCATTCA
1 TATTC-TTTAGACTTTCATTCA
86554461 TGATCATACC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.20, C:0.18, G:0.07, T:0.55
Consensus pattern (23 bp):
TATTCTTTAGACTTTCATTCAAG
Found at i:86556989 original size:41 final size:41
Alignment explanation
Indices: 86556852--86557036 Score: 216
Period size: 41 Copynumber: 4.6 Consensus size: 41
86556842 CGATTCTTAA
* * *
86556852 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * * * *
86556891 CCACTAGCTCGAAGGCCCTTTGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
86556932 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
86556973 CACTGGCTCAAAAGCCCTTCGTAATTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
86557014 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
86557037 CCCAAGCTCG
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
40 41 0.34
41 78 0.64
43 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:86556990 original size:81 final size:81
Alignment explanation
Indices: 86556851--86557050 Score: 244
Period size: 81 Copynumber: 2.5 Consensus size: 81
86556841 ACGATTCTTA
* * * *
86556851 ACACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGGCCACTAGCTCGAAGGCCCTTTGGA
1 ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTAGCTCAAAAGCCCTTCGGA
86556915 ACTAAGTCCGGTTATG
66 ACTAAGTCCGGTTATG
* * *
86556931 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G-CACTGGCTCAAAAGCCCTTCG
1 ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAGGCCACTAGCTCAAAAGCCCTTCG
* * * *
86556994 TAATTAAGTTCGGTTATT
64 GAACTAAGTCCGGTTATG
*
86557012 AGCACTGGCTCAAAAGCCCTTCGAACCCAAGCTCGGATT
1 A-CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATT
86557051 TACACCCCGA
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
80 13 0.13
81 53 0.52
82 32 0.31
83 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTAGCTCAAAAGCCCTTCGGA
ACTAAGTCCGGTTATG
Found at i:86564104 original size:81 final size:81
Alignment explanation
Indices: 86563978--86564177 Score: 262
Period size: 81 Copynumber: 2.5 Consensus size: 81
86563968 ACGATTCTTA
* * *
86563978 ACACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGGCCACTGGCTCGAAGGCCCTTCGGA
1 ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTGGCTCAAAAGCCCTTCGGA
86564042 ACTAAGTCCGGTTATG
66 ACTAAGTCCGGTTATG
* *
86564058 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G-CACTGGCTCAAAAGCCCTTCG
1 ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAGGCCACTGGCTCAAAAGCCCTTCG
* * * *
86564121 TAATTAAGTTCGGTTATT
64 GAACTAAGTCCGGTTATG
*
86564139 AGCACTGGCTCAAAAGCCCTTCGAACCCAAGCTCGGATT
1 A-CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATT
86564178 TACACCCCGA
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 13 0.12
81 55 0.53
82 32 0.31
83 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTGGCTCAAAAGCCCTTCGGA
ACTAAGTCCGGTTATG
Found at i:86564116 original size:41 final size:41
Alignment explanation
Indices: 86563979--86564163 Score: 234
Period size: 41 Copynumber: 4.6 Consensus size: 41
86563969 CGATTCTTAA
* * *
86563979 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * *
86564018 CCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
86564059 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
86564100 CACTGGCTCAAAAGCCCTTCGTAATTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
86564141 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
86564164 CCCAAGCTCG
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
40 44 0.35
41 79 0.63
43 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:86566908 original size:40 final size:40
Alignment explanation
Indices: 86566863--86567029 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86566853 CGGAATATAA
86566863 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
86566903 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86566943 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86566983 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86567022 CCGGATAT
1 CCGGATAT
86567030 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86567013 original size:80 final size:79
Alignment explanation
Indices: 86566863--86567029 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
86566853 CGGAATATAA
* *
86566863 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
86566928 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
86566943 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
86567005 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
86567022 CCGGATAT
1 CCGGATAT
86567030 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:86567878 original size:17 final size:19
Alignment explanation
Indices: 86567855--86567900 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
86567845 AAGAAGCATG
86567855 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
86567873 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
86567891 AATCATGCTC
1 AATCATGCTC
86567901 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:86574915 original size:40 final size:40
Alignment explanation
Indices: 86574870--86575036 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86574860 CGGAATATAA
86574870 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
86574910 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
86574950 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86574990 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86575029 CCGGATAT
1 CCGGATAT
86575037 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.