Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 283 of 410
Found at i:87279788 original size:25 final size:24
Alignment explanation
Indices: 87279760--87279946 Score: 102
Period size: 25 Copynumber: 7.6 Consensus size: 24
87279750 ATTCACATTT
87279760 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGTTA-CTGATAC
*
87279785 TGATTCTGATTCTGATT-CTGTTACC
1 TGATTCTGATTCTG-TTACTGATA-C
* *
87279810 TAATTCTGATTCTGGTT-CTGATTC
1 TGATTCTGATTCT-GTTACTGATAC
* * *
87279834 TGATTCT-ATTACCTGATATTGATTC
1 TGATTCTGATT--CTGTTACTGATAC
* *
87279859 TGATTCT-ATTATCTAATT-CTGATTC
1 TGATTCTGA-T-TCT-GTTACTGATAC
* *
87279884 TGGTTCTGATTTTGATT-CTG-TCACC
1 TGATTCTGATTCTG-TTACTGAT-A-C
*
87279909 TGATTCTGATTCTGATT-CTGATTC
1 TGATTCTGATTCTG-TTACTGATAC
87279933 TGATTCTGATTCTG
1 TGATTCTGATTCTG
87279947 ATTCTAGTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 29
0.74 0.10 0.16
Matches are distributed among these distances:
23 4 0.03
24 36 0.27
25 83 0.63
26 7 0.05
27 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (24 bp):
TGATTCTGATTCTGTTACTGATAC
Found at i:87279798 original size:31 final size:31
Alignment explanation
Indices: 87279760--87279951 Score: 185
Period size: 31 Copynumber: 6.0 Consensus size: 31
87279750 ATTCACATTT
*
87279760 TGATTCTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTTACCTGATTCTGATTC
*
87279791 TGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTA-C-----CTGATTCTGATTC
*
87279828 TGATTCTGATTCTATTACCTGATAT-TGATTC
1 TGATTCTGATTCTGTTACCTGAT-TCTGATTC
* * * * *
87279859 TGATTCT-ATTATCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTA-CCTGATTCTGATTC
* *
87279890 TGATTTTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTGATTCTGATTC
87279921 TGATTCTGATTCTGATT--CTGATTCTGATTC
1 TGATTCTGATTCTG-TTACCTGATTCTGATTC
87279951 T
1 T
87279952 AGTTATGATA
Statistics
Matches: 133, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
30 21 0.16
31 75 0.56
32 9 0.07
36 1 0.01
37 27 0.20
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTTACCTGATTCTGATTC
Found at i:87279819 original size:37 final size:36
Alignment explanation
Indices: 87279760--87279960 Score: 163
Period size: 37 Copynumber: 5.6 Consensus size: 36
87279750 ATTCACATTT
*
87279760 TGATTCTGATTCTGTTAC-----CTGATACTGATTC
1 TGATTCTGATTCTGTTACTGATTCTGATTCTGATTC
* *
87279791 TGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTA-CTGATTCTGATTCTGATTC
*
87279828 TGATTCTGATTCTATTACCTGATAT-TGATTCTGATTC
1 TGATTCTGATTCTGTTA-CTGAT-TCTGATTCTGATTC
* * *
87279865 T-ATTATCTAATTCTGATT-CTGGTTCTGATTTTGATTC
1 TGA-T-TCTGATTCTG-TTACTGATTCTGATTCTGATTC
*
87279902 TG-TCACCTGATTCTGATT-CTGATTCTGATTCTGATTC
1 TGAT--TCTGATTCTG-TTACTGATTCTGATTCTGATTC
87279939 TGATTCTGATTCTAGTTA-TGAT
1 TGATTCTGATTCT-GTTACTGAT
87279961 AATGTTTCTT
Statistics
Matches: 140, Mismatches: 14, Indels: 27
0.77 0.08 0.15
Matches are distributed among these distances:
31 17 0.12
32 1 0.01
36 17 0.12
37 93 0.66
38 10 0.07
39 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (36 bp):
TGATTCTGATTCTGTTACTGATTCTGATTCTGATTC
Found at i:87279860 original size:62 final size:61
Alignment explanation
Indices: 87279784--87279951 Score: 232
Period size: 62 Copynumber: 2.7 Consensus size: 61
87279774 TTACCTGATA
*
87279784 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGATTCTGTTA-CTAATTCTGATTCTGGTTCTGATTCTGATTCTATCAC
* * *
87279846 CTGATAT-TGATTCTGATTCTATTATCTAATTCTGATTCTGGTTCTGATTTTGATTCTGTCAC
1 CTGAT-TCTGATTCTGATTCTGTTA-CTAATTCTGATTCTGGTTCTGATTCTGATTCTATCAC
* *
87279908 CTGATTCTGATTCTGATTCTGATT-CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCTG-TTACTAATTCTGATTCTGGTTCT
87279952 AGTTATGATA
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
61 19 0.20
62 73 0.77
63 3 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (61 bp):
CTGATTCTGATTCTGATTCTGTTACTAATTCTGATTCTGGTTCTGATTCTGATTCTATCAC
Found at i:87279877 original size:19 final size:19
Alignment explanation
Indices: 87279793--87279884 Score: 69
Period size: 19 Copynumber: 4.6 Consensus size: 19
87279783 ACTGATTCTG
* *
87279793 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTATTATCTA
** *
87279812 ATTCTGATTCTGGT-TCTG
1 ATTCTGATTCTATTATCTA
*
87279830 ATTCTGATTCTATTACCTGATA
1 ATTCTGATTCTATTA--T-CTA
87279852 TTGATTCTGATTCTATTATCTA
1 ---ATTCTGATTCTATTATCTA
87279874 ATTCTGATTCT
1 ATTCTGATTCT
87279885 GGTTCTGATT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 14 0.24
19 24 0.41
21 1 0.02
22 3 0.05
23 1 0.02
25 15 0.26
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (19 bp):
ATTCTGATTCTATTATCTA
Found at i:87282015 original size:27 final size:26
Alignment explanation
Indices: 87281911--87282036 Score: 94
Period size: 27 Copynumber: 4.7 Consensus size: 26
87281901 TTAGTTTACT
* *
87281911 AAATTACTGAAATATCTTCAG-TTGTA
1 AAATTAC-GAAATACCCTCAGTTTGTA
* * *
87281937 AAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACGAAA-TACCCTCAGTTTGTA
* *
87281964 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTA-CGAAATACCCTCAG-TTTGTA
*
87281991 AAATTATCGAAATACCCTCAGTTTGCA
1 AAATTA-CGAAATACCCTCAGTTTGTA
**
87282018 AAATTTTTGAAATACCCTC
1 AAA-TTACGAAATACCCTC
87282037 GACATGTAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
25 3 0.04
26 14 0.17
27 56 0.69
28 8 0.10
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (26 bp):
AAATTACGAAATACCCTCAGTTTGTA
Found at i:87282021 original size:54 final size:53
Alignment explanation
Indices: 87281932--87282079 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 53
87281922 ATATCTTCAG
* * * *
87281932 TTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCAAAGTACCCTC-GTTTACAAAATTACCCAAATACCCTCGAC
* ****
87281986 TTGTAAAATTATCGAAA-TACCCTCAGTTTGCAAAATTTTTGAAATACCCTCGAC
1 TTGTAAAATTATC-AAAGTACCCTC-GTTTACAAAATTACCCAAATACCCTCGAC
* *
87282040 ATGTAAAATTATCAAAGTAGCCTCGATTTACAAAATTACC
1 TTGTAAAATTATCAAAGTACCCTCG-TTTACAAAATTACC
87282080 ATTTTACCCT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
53 4 0.05
54 68 0.91
55 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
TTGTAAAATTATCAAAGTACCCTCGTTTACAAAATTACCCAAATACCCTCGAC
Found at i:87282047 original size:27 final size:27
Alignment explanation
Indices: 87281932--87282077 Score: 118
Period size: 27 Copynumber: 5.4 Consensus size: 27
87281922 ATATCTTCAG
* *
87281932 TTGTAAAATTA-CCAAAGTACCCTCGGT
1 TTGTAAAATTATCGAAA-TACCCTCGAT
* * * *
87281959 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCGAAATACCCTCGAT
87281986 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTATCGAAATACCCTCGA-T
* * * *
87282013 TTGCAAAATTTTTGAAATACCCTCGAC
1 TTGTAAAATTATCGAAATACCCTCGAT
* *
87282040 ATGTAAAATTATC-AAAGTAGCCTCGAT
1 TTGTAAAATTATCGAAA-TACCCTCGAT
**
87282067 TTACAAAATTA
1 TTGTAAAATTA
87282078 CCATTTTACC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 4 0.04
27 85 0.89
28 6 0.06
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCTCGAT
Found at i:87282090 original size:27 final size:27
Alignment explanation
Indices: 87282060--87282474 Score: 323
Period size: 27 Copynumber: 15.3 Consensus size: 27
87282050 ATCAAAGTAG
*
87282060 CCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
87282087 CCTCAATTTACAGAATTACTTTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
87282114 CCTCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
87282141 CCTCGATTTACAGAGTTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
87282168 CCTCGAATTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * ** *
87282195 CCTTGATTTACAGAATTACCGTTCTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
87282222 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
87282249 CCTCGATTTAGAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * ***
87282276 CCTCAATTTAAAAAATTACTAAAATAC
1 CCTCGATTTACAAAATTACTATTTTAC
* ** ***
87282303 CC-CTGGTTTGTAAAATTACTAAAATAC
1 CCTC-GATTTACAAAATTACTATTTTAC
* * ** **
87282330 CCCCTAATTTGTAAAATTACTGA-AATAC
1 CCTC-GATTTACAAAATTACT-ATTTTAC
* * * ***
87282358 CCTTGACTGGTA-AAAATTACCAAAGTAC
1 CCTCGA-T-TTACAAAATTACTATTTTAC
* * *
87282386 CCTCGATTTATAGAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
87282413 CCTCGATTTACAGAATTATTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* **
87282440 CCTTGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
87282467 CCTCGATT
1 CCTCGATT
87282475 GTGAAATTAC
Statistics
Matches: 321, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 275 0.86
28 41 0.13
29 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTATTTTAC
Found at i:87282333 original size:28 final size:28
Alignment explanation
Indices: 87282287--87282359 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
87282277 CTCAATTTAA
**
87282287 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
87282314 AAAATTACTAAAATACCCCCTAATTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
*
87282342 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
87282360 TTGACTGGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 15 0.36
28 27 0.64
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTAATTTGT
Found at i:87282403 original size:55 final size:54
Alignment explanation
Indices: 87282273--87282406 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 54
87282263 ATTACCATTT
* * ** * *
87282273 TACCCTCAATTTAAAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCAATTTATAAAATTACTGAAATACCCCTGACTGGTAAAATTACCAAAA
* * * *
87282327 TACCCCCTAATTTGTAAAATTACTGAAATACCCTTGACTGGTAAAAATTACCAAAG
1 TACCCTC-AATTTATAAAATTACTGAAATACCCCTGACTGGT-AAAATTACCAAAA
* *
87282383 TACCCTCGATTTATAGAATTACTG
1 TACCCTCAATTTATAAAATTACTG
87282407 TTTTACCCTC
Statistics
Matches: 64, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
54 6 0.09
55 41 0.64
56 17 0.27
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTATAAAATTACTGAAATACCCCTGACTGGTAAAATTACCAAAA
Found at i:87282509 original size:27 final size:27
Alignment explanation
Indices: 87282479--87282833 Score: 405
Period size: 27 Copynumber: 13.3 Consensus size: 27
87282469 TCGATTGTGA
* * *
87282479 AATTACTGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
87282506 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
87282533 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
87282560 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
87282587 AATTACCG-AATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87282613 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87282640 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87282667 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87282694 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
87282721 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87282748 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
87282775 AATTACTAAAATATCCTTGTA-GGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
87282801 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
87282827 AATTACC
1 AATTACC
87282834 ATTTTGCCCC
Statistics
Matches: 280, Mismatches: 42, Indels: 13
0.84 0.13 0.04
Matches are distributed among these distances:
25 6 0.02
26 49 0.17
27 224 0.80
28 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:87282591 original size:134 final size:134
Alignment explanation
Indices: 87282479--87282780 Score: 403
Period size: 134 Copynumber: 2.2 Consensus size: 134
87282469 TCGATTGTGA
* * **
87282479 AATTACTGCAATACCCCTATAGGGTAGAATTACCA-AAACACCCCTAGT-TTGTAAAATTACCAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTA-CAGAAACACCCCT-GTAGGGTAAAATTACCAA
* *
87282542 AATACCCTTGTAGGGTAGAATTACTAAAATAC-CCTAGTAAGGTAGAATTACCGAATACCTCTGT
64 AATACCCCTGTAGGGTAGAATTACCAAAATACACCT-GTAAGGTAGAATTACCGAATACCTCTGT
87282606 AGGGTAG
128 AGGGTAG
* * * *
87282613 AATTACCGAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACAGAAACACCCCTGTAGGGTAAAATTACCAAAA
* * * * *
87282678 TACCCCTGTAGGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTATCGCAATACCCCTATAG
66 TACCCCTGTAGGGTAGAATTACCAAAATACACCTGTAAGGTAGAATTACCG-AATACCTCTGTAG
87282743 GGTAG
130 GGTAG
*
87282748 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
1 AATTACCGAAATACCCCTATAGGGTAGAATTAC
87282781 TAAAATATCC
Statistics
Matches: 149, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
133 4 0.03
134 93 0.62
135 52 0.35
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (134 bp):
AATTACCGAAATACCCCTATAGGGTAGAATTACAGAAACACCCCTGTAGGGTAAAATTACCAAAA
TACCCCTGTAGGGTAGAATTACCAAAATACACCTGTAAGGTAGAATTACCGAATACCTCTGTAGG
GTAG
Found at i:87283167 original size:67 final size:67
Alignment explanation
Indices: 87283059--87283212 Score: 272
Period size: 67 Copynumber: 2.3 Consensus size: 67
87283049 GAGGAAGCGT
* *
87283059 TCTGGCAGCCTCGCTGCAATTTGGTGGCTTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCATCGCCACATATATCTATTCTGGTGACTTCGTCACAA
87283124 TA
66 TA
* *
87283126 TCTGGTAGCCTCGCTGCAATCTGGTGGCATCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCATCGCCACATATATCTATTCTGGTGACTTCGTCACAA
87283191 TA
66 TA
87283193 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
87283213 TTCTATGGTG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCATCGCCACATATATCTATTCTGGTGACTTCGTCACAA
TA
Found at i:87283189 original size:27 final size:26
Alignment explanation
Indices: 87283145--87283196 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87283135 CTCGCTGCAA
*
87283145 TCTGGTGGCATCGCCACATATATCTGT
1 TCTGGTGACATCGCCACA-ATATCTGT
* *
87283172 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACATCGCCACAATATCTG
87283197 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACATCGCCACAATATCTGT
Found at i:87283326 original size:6 final size:6
Alignment explanation
Indices: 87283317--87283507 Score: 171
Period size: 6 Copynumber: 31.2 Consensus size: 6
87283307 ATTCACATTT
*
87283317 TGATTC TGATTC TG-TTACC TGATAC TGATTC TGATTC TGATTC TG-TTACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGATT--C
* *
87283367 TAATTC TGATTC TGGTTC TGATTC TGATTC --ATTACC TGA-TC TTGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC -TGATTC
* * * *
87283415 TGATTC T-ATTATC TAATTC TGATTC TGGTTC TGATTT TGATTC TG-TCACC
1 TGATTC TGA-T-TC TGATTC TGATTC TGATTC TGATTC TGATTC TGAT--TC
87283465 TGATTC TGATTC TGATTC TGATTC TGATTC TGATTC TGATTC T
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATTC TGATTC T
87283508 AGTTATGATA
Statistics
Matches: 154, Mismatches: 13, Indels: 36
0.76 0.06 0.18
Matches are distributed among these distances:
4 3 0.02
5 7 0.05
6 123 0.80
7 15 0.10
8 6 0.04
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:87283345 original size:25 final size:23
Alignment explanation
Indices: 87283317--87283507 Score: 120
Period size: 25 Copynumber: 7.8 Consensus size: 23
87283307 ATTCACATTT
87283317 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGTT--CTGATAC
*
87283342 TGATTCTGATTCTGATTCTGTTACC
1 TGATTCTGATTCTG-TTCTGATA-C
* *
87283367 TAATTCTGATTCTGGTTCTGATTC
1 TGATTCTGATTCT-GTTCTGATAC
* *
87283391 TGATTC--ATTACCTGATCTTGATTC
1 TGATTCTGATT--CTGTTC-TGATAC
* *
87283415 TGATTCT-ATTATCTAATTCTGATTC
1 TGATTCTGA-T-TCT-GTTCTGATAC
* *
87283440 TGGTTCTGATTTTGATTCTG-TCACC
1 TGATTCTGATTCTG-TTCTGAT-A-C
*
87283465 TGATTCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTG-TTCTGATAC
87283489 TGATTCTGATTCTGATTCT
1 TGATTCTGATTCTG-TTCT
87283508 AGTTATGATA
Statistics
Matches: 136, Mismatches: 15, Indels: 31
0.75 0.08 0.17
Matches are distributed among these distances:
22 3 0.02
23 4 0.03
24 52 0.38
25 68 0.50
26 8 0.06
27 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (23 bp):
TGATTCTGATTCTGTTCTGATAC
Found at i:87283355 original size:31 final size:31
Alignment explanation
Indices: 87283317--87283507 Score: 192
Period size: 31 Copynumber: 6.0 Consensus size: 31
87283307 ATTCACATTT
*
87283317 TGATTCTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTTACCTGATTCTGATTC
*
87283348 TGATTCTGATTCTGTTACCTAATTCTGATTC
1 TGATTCTGATTCTGTTACCTGATTCTGATTC
*
87283379 TGGTTCTGATTCTGATTCATTACCTGA-TCTTGATTC
1 TGATTCTGATTCTG-----TTACCTGATTC-TGATTC
* * * * *
87283415 TGATTCT-ATTATCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTA-CCTGATTCTGATTC
* *
87283446 TGATTTTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTGATTCTGATTC
87283477 TGATTCTGATTCTGATT--CTGATTCTGATTC
1 TGATTCTGATTCTG-TTACCTGATTCTGATTC
87283507 T
1 T
87283508 AGTTATGATA
Statistics
Matches: 132, Mismatches: 18, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
30 16 0.12
31 82 0.62
32 9 0.07
35 6 0.05
36 19 0.14
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTTACCTGATTCTGATTC
Found at i:87283416 original size:61 final size:61
Alignment explanation
Indices: 87283341--87283507 Score: 225
Period size: 61 Copynumber: 2.7 Consensus size: 61
87283331 TTACCTGATA
87283341 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTGATTCTGATTCAT-T-AC
1 CTGATTCTGATTCTGATTCTGTTA-CTAATTCTGATTCTGGTTCTGATTCTGATTC-TGTCAC
* *
87283402 CTGA-TCTTGATTCTGATTCTATTATCTAATTCTGATTCTGGTTCTGATTTTGATTCTGTCAC
1 CTGATTC-TGATTCTGATTCTGTTA-CTAATTCTGATTCTGGTTCTGATTCTGATTCTGTCAC
* *
87283464 CTGATTCTGATTCTGATTCTGATT-CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCTG-TTACTAATTCTGATTCTGGTTCT
87283508 AGTTATGATA
Statistics
Matches: 95, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
60 3 0.03
61 69 0.73
62 19 0.20
63 4 0.04
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (61 bp):
CTGATTCTGATTCTGATTCTGTTACTAATTCTGATTCTGGTTCTGATTCTGATTCTGTCAC
Found at i:87285572 original size:27 final size:26
Alignment explanation
Indices: 87285468--87285593 Score: 94
Period size: 27 Copynumber: 4.7 Consensus size: 26
87285458 TTAGTTTACT
* *
87285468 AAATTACTGAAATATCTTCAG-TTGTA
1 AAATTAC-GAAATACCCTCAGTTTGTA
* * *
87285494 AAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACGAAA-TACCCTCAGTTTGTA
* *
87285521 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTA-CGAAATACCCTCAG-TTTGTA
*
87285548 AAATTATCGAAATACCCTCAGTTTGCA
1 AAATTA-CGAAATACCCTCAGTTTGTA
**
87285575 AAATTTTTGAAATACCCTC
1 AAA-TTACGAAATACCCTC
87285594 GACATGTAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
25 3 0.04
26 14 0.17
27 56 0.69
28 8 0.10
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (26 bp):
AAATTACGAAATACCCTCAGTTTGTA
Found at i:87285578 original size:54 final size:53
Alignment explanation
Indices: 87285489--87285636 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 53
87285479 ATATCTTCAG
* * * *
87285489 TTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCAAAGTACCCTC-GTTTACAAAATTACCCAAATACCCTCGAC
* ****
87285543 TTGTAAAATTATCGAAA-TACCCTCAGTTTGCAAAATTTTTGAAATACCCTCGAC
1 TTGTAAAATTATC-AAAGTACCCTC-GTTTACAAAATTACCCAAATACCCTCGAC
* *
87285597 ATGTAAAATTATCAAAGTAGCCTCGATTTACAAAATTACC
1 TTGTAAAATTATCAAAGTACCCTCG-TTTACAAAATTACC
87285637 ATTTTACCCT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
53 4 0.05
54 68 0.91
55 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
TTGTAAAATTATCAAAGTACCCTCGTTTACAAAATTACCCAAATACCCTCGAC
Found at i:87285604 original size:27 final size:27
Alignment explanation
Indices: 87285489--87285634 Score: 118
Period size: 27 Copynumber: 5.4 Consensus size: 27
87285479 ATATCTTCAG
* *
87285489 TTGTAAAATTA-CCAAAGTACCCTCGGT
1 TTGTAAAATTATCGAAA-TACCCTCGAT
* * * *
87285516 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCGAAATACCCTCGAT
87285543 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTATCGAAATACCCTCGA-T
* * * *
87285570 TTGCAAAATTTTTGAAATACCCTCGAC
1 TTGTAAAATTATCGAAATACCCTCGAT
* *
87285597 ATGTAAAATTATC-AAAGTAGCCTCGAT
1 TTGTAAAATTATCGAAA-TACCCTCGAT
**
87285624 TTACAAAATTA
1 TTGTAAAATTA
87285635 CCATTTTACC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 4 0.04
27 85 0.89
28 6 0.06
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCTCGAT
Found at i:87285647 original size:27 final size:27
Alignment explanation
Indices: 87285617--87286031 Score: 323
Period size: 27 Copynumber: 15.3 Consensus size: 27
87285607 ATCAAAGTAG
*
87285617 CCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
87285644 CCTCAATTTACAGAATTACTTTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
87285671 CCTCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
87285698 CCTCGATTTACAGAGTTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
87285725 CCTCGAATTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * ** *
87285752 CCTTGATTTACAGAATTACCGTTCTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
87285779 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
87285806 CCTCGATTTAGAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * ***
87285833 CCTCAATTTAAAAAATTACTAAAATAC
1 CCTCGATTTACAAAATTACTATTTTAC
* ** ***
87285860 CC-CTGGTTTGTAAAATTACTAAAATAC
1 CCTC-GATTTACAAAATTACTATTTTAC
* * ** **
87285887 CCCCTAATTTGTAAAATTACTGA-AATAC
1 CCTC-GATTTACAAAATTACT-ATTTTAC
* * * ***
87285915 CCTTGACTGGTA-AAAATTACCAAAGTAC
1 CCTCGA-T-TTACAAAATTACTATTTTAC
* * *
87285943 CCTCGATTTATAGAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
87285970 CCTCGATTTACAGAATTATTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* **
87285997 CCTTGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
87286024 CCTCGATT
1 CCTCGATT
87286032 GTGAAATTAC
Statistics
Matches: 321, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 275 0.86
28 41 0.13
29 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTATTTTAC
Found at i:87285890 original size:28 final size:28
Alignment explanation
Indices: 87285844--87285916 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
87285834 CTCAATTTAA
**
87285844 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
87285871 AAAATTACTAAAATACCCCCTAATTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
*
87285899 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
87285917 TTGACTGGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 15 0.36
28 27 0.64
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTAATTTGT
Found at i:87285960 original size:55 final size:54
Alignment explanation
Indices: 87285830--87285963 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 54
87285820 ATTACCATTT
* * ** * *
87285830 TACCCTCAATTTAAAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCAATTTATAAAATTACTGAAATACCCCTGACTGGTAAAATTACCAAAA
* * * *
87285884 TACCCCCTAATTTGTAAAATTACTGAAATACCCTTGACTGGTAAAAATTACCAAAG
1 TACCCTC-AATTTATAAAATTACTGAAATACCCCTGACTGGT-AAAATTACCAAAA
* *
87285940 TACCCTCGATTTATAGAATTACTG
1 TACCCTCAATTTATAAAATTACTG
87285964 TTTTACCCTC
Statistics
Matches: 64, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
54 6 0.09
55 41 0.64
56 17 0.27
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTATAAAATTACTGAAATACCCCTGACTGGTAAAATTACCAAAA
Found at i:87286066 original size:27 final size:27
Alignment explanation
Indices: 87286036--87286391 Score: 414
Period size: 27 Copynumber: 13.3 Consensus size: 27
87286026 TCGATTGTGA
* * *
87286036 AATTACTGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
87286063 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
87286090 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
87286117 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
87286144 AATTACCG-AATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87286170 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87286197 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87286224 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87286251 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
87286278 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87286305 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
87286332 AATTACTAAAATATCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
87286359 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
87286385 AATTACC
1 AATTACC
87286392 ATTTTGCCCC
Statistics
Matches: 282, Mismatches: 42, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
26 42 0.15
27 239 0.85
28 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:87286148 original size:134 final size:134
Alignment explanation
Indices: 87286036--87286337 Score: 403
Period size: 134 Copynumber: 2.2 Consensus size: 134
87286026 TCGATTGTGA
* * **
87286036 AATTACTGCAATACCCCTATAGGGTAGAATTACCA-AAACACCCCTAGT-TTGTAAAATTACCAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTA-CAGAAACACCCCT-GTAGGGTAAAATTACCAA
* *
87286099 AATACCCTTGTAGGGTAGAATTACTAAAATAC-CCTAGTAAGGTAGAATTACCGAATACCTCTGT
64 AATACCCCTGTAGGGTAGAATTACCAAAATACACCT-GTAAGGTAGAATTACCGAATACCTCTGT
87286163 AGGGTAG
128 AGGGTAG
* * * *
87286170 AATTACCGAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACAGAAACACCCCTGTAGGGTAAAATTACCAAAA
* * * * *
87286235 TACCCCTGTAGGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTATCGCAATACCCCTATAG
66 TACCCCTGTAGGGTAGAATTACCAAAATACACCTGTAAGGTAGAATTACCG-AATACCTCTGTAG
87286300 GGTAG
130 GGTAG
*
87286305 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
1 AATTACCGAAATACCCCTATAGGGTAGAATTAC
87286338 TAAAATATCC
Statistics
Matches: 149, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
133 4 0.03
134 93 0.62
135 52 0.35
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (134 bp):
AATTACCGAAATACCCCTATAGGGTAGAATTACAGAAACACCCCTGTAGGGTAAAATTACCAAAA
TACCCCTGTAGGGTAGAATTACCAAAATACACCTGTAAGGTAGAATTACCGAATACCTCTGTAGG
GTAG
Found at i:87286674 original size:27 final size:26
Alignment explanation
Indices: 87286636--87286687 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
87286626 CTCGCTGCAA
*
87286636 TCTGGTGGCTTCGCCACATATATCTGC
1 TCTGGTGACTTCGCCACA-ATATCTGC
*
87286663 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
87286688 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGC
Found at i:87286725 original size:67 final size:67
Alignment explanation
Indices: 87286617--87286770 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
87286607 GAGGAAGCGT
87286617 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGCTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGCTCTGGTGACTTCGTCACAA
87286682 TA
66 TA
* *
87286684 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTTGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGCTCTGGTGACTTCGTCACAA
87286749 TA
66 TA
87286751 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
87286771 TTCTGTGGTG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 85 1.00
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGCTCTGGTGACTTCGTCACAA
TA
Found at i:87286747 original size:27 final size:26
Alignment explanation
Indices: 87286703--87286754 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87286693 CTCGCTGCAA
*
87286703 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
* *
87286730 TCTGGTGACTTTGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
87286755 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:87286882 original size:6 final size:6
Alignment explanation
Indices: 87286873--87286952 Score: 76
Period size: 6 Copynumber: 13.0 Consensus size: 6
87286863 TTGCATTCAC
*
87286873 ATTCTG ATTCTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATT--CTG
*
87286923 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
87286953 TGTTATATTG
Statistics
Matches: 62, Mismatches: 4, Indels: 16
0.76 0.05 0.20
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 5 0.08
8 3 0.05
9 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:87286905 original size:25 final size:25
Alignment explanation
Indices: 87286873--87286940 Score: 102
Period size: 25 Copynumber: 2.7 Consensus size: 25
87286863 TTGCATTCAC
*
87286873 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
87286898 ATAT-TGATTCTGATTCTGTTACCTA
1 AT-TCTGATTCTGATTCTGTTACCTA
*
87286923 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
87286941 ATTCTGATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 1 0.03
25 37 0.95
26 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:87287092 original size:67 final size:67
Alignment explanation
Indices: 87286976--87287196 Score: 388
Period size: 67 Copynumber: 3.3 Consensus size: 67
87286966 GAGGAAGCGT
* *
87286976 TCTGGCAGCCTCGCTGCAATTTGGTGGCTTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
87287041 TA
66 TA
* * *
87287043 TTTGGTAGCCTCGCTGCAATCTGGTGGCATCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
87287108 TA
66 TA
*
87287110 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTTGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
87287175 TA
66 TA
87287177 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
87287197 TTCTGTGGTG
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 145 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:87287106 original size:27 final size:26
Alignment explanation
Indices: 87287062--87287113 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87287052 CTCGCTGCAA
*
87287062 TCTGGTGGCATCGCCACATATATCTGT
1 TCTGGTGACATCGCCACA-ATATCTGT
* *
87287089 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACATCGCCACAATATCTG
87287114 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACATCGCCACAATATCTGT
Found at i:87287173 original size:27 final size:26
Alignment explanation
Indices: 87287129--87287180 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87287119 CTCGCTGCAA
*
87287129 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
* *
87287156 TCTGGTGACTTTGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
87287181 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:87287308 original size:6 final size:6
Alignment explanation
Indices: 87287299--87287482 Score: 148
Period size: 6 Copynumber: 29.8 Consensus size: 6
87287289 TTGCATTCAC
*
87287299 ATTCTG ATTCTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATT--CTG
* * *
87287349 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATACTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
87287398 ATTCTG ATTCTG -TTACCTA ATTCTG ATTCT- AGTTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG
*
87287447 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
87287483 AGTTATGATA
Statistics
Matches: 147, Mismatches: 12, Indels: 38
0.75 0.06 0.19
Matches are distributed among these distances:
5 11 0.07
6 114 0.78
7 14 0.10
8 7 0.05
9 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:87287331 original size:25 final size:25
Alignment explanation
Indices: 87287303--87287415 Score: 95
Period size: 25 Copynumber: 4.8 Consensus size: 25
87287293 ATTCACATTC
87287303 TGATTCTGATTCTGTTACCTGATAT
1 TGATTCTGATTCTGTTACCTGATAT
87287328 TGATTCTGATTCTGTTACC---TA-
1 TGATTCTGATTCTGTTACCTGATAT
87287349 --ATTCTGATTCTGGTT--CTGAT-T
1 TGATTCTGATTCT-GTTACCTGATAT
* *
87287370 CTGATTCTG-TTACCTGATA-CTGATAC
1 -TGATTCTGATT--CTGTTACCTGATAT
87287396 TGATTCTGATTCTGTTACCT
1 TGATTCTGATTCTGTTACCT
87287416 AATTCTGATT
Statistics
Matches: 71, Mismatches: 3, Indels: 28
0.70 0.03 0.27
Matches are distributed among these distances:
18 1 0.01
19 11 0.15
20 3 0.04
21 1 0.01
22 2 0.03
23 2 0.03
24 13 0.18
25 36 0.51
26 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (25 bp):
TGATTCTGATTCTGTTACCTGATAT
Found at i:87287334 original size:31 final size:31
Alignment explanation
Indices: 87287299--87287477 Score: 152
Period size: 31 Copynumber: 5.6 Consensus size: 31
87287289 TTGCATTCAC
87287299 ATTCTGATTCTGATTCTGTTACCTGATATTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
*
87287330 ATTCTGATTCTG-TTACCTAATT--CTGAT-TCTG
1 ATTCTGATTCTGATT--CT-GTTACCTGATAT-TG
* *
87287361 GTTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
* * *
87287392 ATACTGATTCTGATTCTGTTACCTAATTCTGATTCT
1 ATTCTGATTCTGATTCTGTTACCTGA---T-ATT-G
* *
87287428 AGTTCTGATTTTGATTCTGTCACCTGAT-TCTG
1 A-TTCTGATTCTGATTCTGTTACCTGATAT-TG
87287460 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
87287478 ATTCTAGTTA
Statistics
Matches: 118, Mismatches: 15, Indels: 30
0.72 0.09 0.18
Matches are distributed among these distances:
29 2 0.02
30 5 0.04
31 76 0.64
32 6 0.05
33 3 0.03
34 2 0.02
35 2 0.02
36 1 0.01
37 21 0.18
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATATTG
Found at i:87287369 original size:37 final size:37
Alignment explanation
Indices: 87287328--87287487 Score: 199
Period size: 37 Copynumber: 4.5 Consensus size: 37
87287318 TACCTGATAT
*
87287328 TGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
* *
87287365 TGATTCTGATTCTGTTA-C-----CTGATACTGATAC
1 TGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
87287396 TGATTCTGATTCTGTTACCTAATTCTGATTCT-AGTTC
1 TGATTCTGATTCTGTTACCTAATTCTGATTCTGA-TTC
* * *
87287433 TGATTTTGATTCTGTCACCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
87287470 TGATTCTGATTCTAGTTA
1 TGATTCTGATTCT-GTTA
87287488 TGATAATGTT
Statistics
Matches: 104, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
31 27 0.26
32 1 0.01
36 2 0.02
37 70 0.67
38 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (37 bp):
TGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
Found at i:87287408 original size:68 final size:67
Alignment explanation
Indices: 87287300--87287477 Score: 267
Period size: 68 Copynumber: 2.7 Consensus size: 67
87287290 TGCATTCACA
87287300 TTCTGATTCTGATTCTGTTACCTG--A-T-AT-TGATTCTGATTCTGTTACCTAATTCTGATTCT
1 TTCTGATTCTGATTCTGTTACCTGATACTGATCTGATTCTGATTCTGTTACCTAATTCTGATTCT
*
87287360 GG
66 AG
87287362 TTCTGATTCTGATTCTGTTACCTGATACTGATACTGATTCTGATTCTGTTACCTAATTCTGATTC
1 TTCTGATTCTGATTCTGTTACCTGATACTGAT-CTGATTCTGATTCTGTTACCTAATTCTGATTC
87287427 TAG
65 TAG
* * *
87287430 TTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTGATTCTG
1 TTCTGATTCTGATTCTGTTACCTGATACTGA-TCTGATTCTGATTCTG
87287478 ATTCTAGTTA
Statistics
Matches: 105, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
62 24 0.23
64 1 0.01
65 1 0.01
66 2 0.02
68 76 0.72
69 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (67 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATCTGATTCTGATTCTGTTACCTAATTCTGATTCT
AG
Found at i:87293098 original size:40 final size:40
Alignment explanation
Indices: 87293037--87293130 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
87293027 CGATATCTCA
* * **
87293037 CACACTAAGTGTCGTACATAGCTGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATACATAGCCAAAGCTATCTCAAATCG
* * *
87293077 CACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATCG
1 CACACTAAGTGCCATACATAGCCAAAGCTATCTCAAATCG
87293117 CACACTAAGTGCCA
1 CACACTAAGTGCCA
87293131 CAAATAATCG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCAAAGCTATCTCAAATCG
Found at i:87297183 original size:17 final size:18
Alignment explanation
Indices: 87297150--87297184 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
87297140 TTTTTGAGCC
87297150 AAAAATTTTTTCCCAAATT
1 AAAAATTTTTT-CCAAATT
87297169 AAAAATTTTTT-CAAAT
1 AAAAATTTTTTCCAAAT
87297185 ACTCATAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
19 11 0.69
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAAATTTTTTCCAAATT
Found at i:87298846 original size:49 final size:49
Alignment explanation
Indices: 87298757--87298851 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
87298747 TCTATTGTGA
* *
87298757 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
87298806 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
87298852 GCTTTGGCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:87301781 original size:29 final size:28
Alignment explanation
Indices: 87301714--87301842 Score: 136
Period size: 29 Copynumber: 4.6 Consensus size: 28
87301704 ACCCCTACAT
* *
87301714 ACATGCATATAGCCCACTT-GGCCCA-TC
1 ACATTCATATGGCCCA-TTAGGCCCATTC
* *
87301741 TCATTTATATGGCCCATTAGGCCCGATTC
1 ACATTCATATGGCCCATTAGGCCC-ATTC
*
87301770 ACATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCC-ATTC
* *
87301799 AGATTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCATTC
* *
87301827 TCATTTATATGGCCCA
1 ACATTCATATGGCCCA
87301843 ACAAGCCCAA
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 17 0.20
28 17 0.20
29 49 0.58
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCATTC
Found at i:87305592 original size:40 final size:40
Alignment explanation
Indices: 87305537--87305676 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 40
87305527 GATGTCCAGG
87305537 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
*
87305577 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
* * *
87305617 TTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGA
* *
87305657 CTATGTCCCGAAGGTATTTG
1 CTAAGTCCCGAAGGCATTTG
87305677 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 87 0.96
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
Found at i:87305694 original size:80 final size:79
Alignment explanation
Indices: 87305538--87305699 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 79
87305528 ATGTCCAGGC
* **
87305538 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG
87305603 TTACTAAATCCGGGT
66 TTACTAAATCC-GGT
* * * *
87305618 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAATG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACG
*
87305681 AG-TAGCTATATCCGGT
64 AGTTA-CTAAATCCGGT
87305697 TAA
1 TAA
87305700 ACTCCGAAGG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 9 0.13
80 60 0.85
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG
TTACTAAATCCGGT
Found at i:87313587 original size:40 final size:41
Alignment explanation
Indices: 87313530--87313714 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 41
87313520 TCGAATGATG
* * * *
87313530 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
*
87313570 TCCGGACTAAGAT-CCGAAGGCATTTGTAC-GAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
87313610 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
** *
87313650 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTA-AA
* * *
87313691 -CCGGGCTATG-CCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
87313715 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
39 14 0.11
40 104 0.82
41 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (41 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
Found at i:87317316 original size:29 final size:28
Alignment explanation
Indices: 87317236--87317317 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
87317226 ACCCCCACAT
* *
87317236 ACATGCATATGGCCCACTAGGCCC-ATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * ** *
87317263 TCATTTATATGGCCCATCCGACCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
87317292 ACATTCATATGGCCCATTAGGCCCAA
1 ACATTCATATGGCCCATTAGGCCCAA
87317318 CCGGCCCAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
27 17 0.41
28 1 0.02
29 23 0.56
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:87317566 original size:8 final size:8
Alignment explanation
Indices: 87317550--87317592 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
87317540 GCAGCTAAAC
*
87317550 TTTCAGCT
1 TTTCGGCT
87317558 TTTCGGCT
1 TTTCGGCT
*
87317566 TTTCGGCA
1 TTTCGGCT
*
87317574 TTTCGACT
1 TTTCGGCT
87317582 TTTCGGCT
1 TTTCGGCT
87317590 TTT
1 TTT
87317593 ACCGATCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.07, C:0.23, G:0.19, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:87318839 original size:16 final size:16
Alignment explanation
Indices: 87318814--87318846 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
87318804 AAATTTTCAT
87318814 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
*
87318830 GATTTTGGGATTTTTG
1 GATTTCGGGATTTTTG
87318846 G
1 G
87318847 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.52
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:87321356 original size:46 final size:47
Alignment explanation
Indices: 87321303--87321425 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 47
87321293 TATGTGTGCT
*
87321303 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATT-ACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGACGAGAGCC
* *
87321349 AGTGTAAGACATGTCTGGGACATGCAT-TG--ACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT--GACGAGAGCC
*
87321395 AGTATAAGACAT-TCTGGGACATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
87321426 TCAAGATATA
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
43 5 0.08
45 15 0.23
46 46 0.70
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGACGAGAGCC
Found at i:87322640 original size:28 final size:28
Alignment explanation
Indices: 87322585--87322680 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
87322575 ATTTAAACCC
*
87322585 TAGGGGT-ATATT-GGTAA-TTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
87322611 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
87322639 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87322667 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
87322681 TGATCTACGC
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
26 9 0.14
27 7 0.11
28 48 0.75
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:87323331 original size:27 final size:27
Alignment explanation
Indices: 87323301--87323362 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
87323291 GGGCAAAATG
87323301 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
87323328 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
87323355 GTAATTTT
1 GTAATTTT
87323363 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:87323474 original size:27 final size:27
Alignment explanation
Indices: 87323345--87323467 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
87323335 TACCCTACAG
*
87323345 GGGTATTTTAGTAATTTT-TCAAACC-A
1 GGGTATTTTGGTAATTTTAT-AAACCAA
* *
87323371 TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
87323398 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
87323425 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
87323452 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
87323468 CTGTAAATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.24
27 62 0.76
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:87323481 original size:27 final size:27
Alignment explanation
Indices: 87323451--87323521 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
87323441 TTATAAACCA
* *
87323451 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
87323478 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
87323505 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
87323522 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:87323483 original size:54 final size:54
Alignment explanation
Indices: 87323345--87323467 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
87323335 TACCCTACAG
* *
87323345 GGGTATTTTAGTAATTTTTCAAACCA-TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
87323398 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
87323452 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
87323468 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
53 25 0.39
54 39 0.61
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:87326758 original size:27 final size:28
Alignment explanation
Indices: 87326727--87326822 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
87326717 ATTTAAACCC
*
87326727 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
87326754 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
87326781 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
87326809 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
87326823 TGATCTACGC
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
26 6 0.10
27 20 0.32
28 37 0.59
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.46
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:87327471 original size:27 final size:27
Alignment explanation
Indices: 87327441--87327502 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
87327431 GGGCAAAATG
87327441 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
87327468 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
87327495 GTAATTTT
1 GTAATTTT
87327503 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:87327614 original size:27 final size:27
Alignment explanation
Indices: 87327485--87327607 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
87327475 TACCCTACAG
*
87327485 GGGTATTTTAGTAATTTT-TCAAACC-A
1 GGGTATTTTGGTAATTTTAT-AAACCAA
* *
87327511 TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
87327538 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
87327565 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
87327592 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
87327608 CTGTAAATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.24
27 62 0.76
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:87327621 original size:27 final size:27
Alignment explanation
Indices: 87327591--87327661 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
87327581 TTATAAACCA
* *
87327591 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
87327618 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
87327645 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
87327662 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:87327623 original size:54 final size:54
Alignment explanation
Indices: 87327485--87327607 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
87327475 TACCCTACAG
* *
87327485 GGGTATTTTAGTAATTTTTCAAACCA-TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
87327538 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
87327592 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
87327608 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
53 25 0.39
54 39 0.61
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:87331824 original size:40 final size:40
Alignment explanation
Indices: 87331632--87331817 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
87331622 TCGAATGATG
* * * *
87331632 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
87331672 TCCGGACTAAGAT-CCGAAGGCATTCATGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87331712 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87331752 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87331793 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87331818 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.93
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87331824 original size:80 final size:79
Alignment explanation
Indices: 87331685--87331840 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
87331675 GGACTAAGAT
**
87331685 CCGAAGGCATTCATGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCATGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
87331749 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
** * *
87331765 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTCATGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
87331828 TATATCCGGTTAA
64 TAAATCCGGTTAA
87331841 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCATGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:87338318 original size:29 final size:28
Alignment explanation
Indices: 87338251--87338322 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
87338241 AAAATTGTAC
* * *
87338251 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
87338279 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
87338308 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
87338323 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:87349369 original size:30 final size:30
Alignment explanation
Indices: 87349333--87349433 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
87349323 GACAAGATTG
* * *
87349333 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
87349363 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
87349391 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
87349420 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87349434 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:87349445 original size:29 final size:28
Alignment explanation
Indices: 87349362--87349437 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
87349352 AAAATTGTAC
* *
87349362 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
87349390 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
87349419 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
87349438 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:87353182 original size:78 final size:81
Alignment explanation
Indices: 87353053--87353230 Score: 208
Period size: 78 Copynumber: 2.2 Consensus size: 81
87353043 GATGTCCGGG
*
87353053 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCG-GCG
1 CTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCG
87353116 AGTTAC-TA-AATCCGA
66 AGTTACATATAA-CCGA
* * ** *
87353131 CTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTG
1 CTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTG
*
87353193 CGAGTTACATATAACCGG
64 CGAGTTACATATAACCGA
*
87353211 CTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTG
87353231 AACGAGTAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
77 1 0.01
78 42 0.49
79 18 0.21
80 22 0.26
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (81 bp):
CTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCG
AGTTACATATAACCGA
Found at i:87353237 original size:40 final size:40
Alignment explanation
Indices: 87353047--87353230 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
87353037 TCGAATGATG
* * *
87353047 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
87353087 TCCGGACTAAGAT-CCGAAGGCATTCG-GCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87353126 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87353165 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACATATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-TA-AA
*
87353207 -CC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87353231 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
38 21 0.17
39 28 0.22
40 68 0.54
41 8 0.06
42 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87360397 original size:8 final size:8
Alignment explanation
Indices: 87360384--87360409 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
87360374 AAATCTATAG
87360384 ACAGAGAA
1 ACAGAGAA
87360392 ACAGAGAA
1 ACAGAGAA
87360400 ACAGAGAA
1 ACAGAGAA
87360408 AC
1 AC
87360410 GGAGTAAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.15, G:0.23, T:0.00
Consensus pattern (8 bp):
ACAGAGAA
Found at i:87360860 original size:40 final size:39
Alignment explanation
Indices: 87360816--87360941 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 39
87360806 GGGACTCAAC
*
87360816 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * *
87360856 CCGGATTTAGTAACTCGCACGTATG-CTGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCT-TCGGATCTTAGT
*
87360896 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
87360936 CCGGAT
1 CCGGAT
87360942 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
39 2 0.03
40 60 0.83
41 10 0.14
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:87363697 original size:40 final size:40
Alignment explanation
Indices: 87363505--87363690 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
87363495 TCGAATGATG
* * *
87363505 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
87363545 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87363585 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87363625 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87363666 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87363691 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87363697 original size:80 final size:80
Alignment explanation
Indices: 87363505--87363723 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 80
87363495 TCGAATGATG
* * **
87363505 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
87363569 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
87363585 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
*
87363648 TTGTGCGAGTTACTATAA
64 TCGTGCGAGTTACTA-AA
* **
87363666 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
87363724 TACGTGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
79 17 0.14
80 92 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:87367276 original size:6 final size:6
Alignment explanation
Indices: 87367266--87367295 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
87367256 AGGGTTAGTT
*
87367266 GAACCT GAACCA GAACCA GAACCA GAACCA
1 GAACCA GAACCA GAACCA GAACCA GAACCA
87367296 AGGCAAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.47, C:0.33, G:0.17, T:0.03
Consensus pattern (6 bp):
GAACCA
Found at i:87369108 original size:15 final size:16
Alignment explanation
Indices: 87369090--87369129 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
87369080 TTAAACTCAT
*
87369090 TTTATTTTTATTT-TC
1 TTTATTTTTATTTCTA
*
87369105 TTTACTTTTATTTCTA
1 TTTATTTTTATTTCTA
87369121 TTTATTTTT
1 TTTATTTTT
87369130 GAAGACTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTTTATTTCTA
Found at i:87370778 original size:20 final size:20
Alignment explanation
Indices: 87370753--87370795 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
87370743 TATCCCATGC
*
87370753 TTAGCATATTTTTGGATGAA
1 TTAGCATATATTTGGATGAA
87370773 TTAGCATATATTTGGATGAA
1 TTAGCATATATTTGGATGAA
87370793 TTA
1 TTA
87370796 TCCTTAGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.44
Consensus pattern (20 bp):
TTAGCATATATTTGGATGAA
Found at i:87370808 original size:21 final size:20
Alignment explanation
Indices: 87370763--87370814 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
87370753 TTAGCATATT
* *
87370763 TTTGGATGAATTAGCATATA
1 TTTGGATGAATTACCATAGA
*
87370783 TTTGGATGAATTATCCTTAGA
1 TTTGGATGAATTA-CCATAGA
87370804 TTTGG-TGAATT
1 TTTGGATGAATT
87370815 TGATGCTCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (20 bp):
TTTGGATGAATTACCATAGA
Found at i:87372686 original size:42 final size:42
Alignment explanation
Indices: 87372626--87372722 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 42
87372616 GTGTTATAGC
* *
87372626 TATGGTCTTA-AGCGAAGTCTCATA-TCGATGCCATAGCCCAGA
1 TATGGTCTTACA-CAAAGTCTCATAGT-GATGCCATAGCCCAAA
*
87372668 TATGGTCTTACACAAAGTCTCATAGTGATGCCATATCCCAAA
1 TATGGTCTTACACAAAGTCTCATAGTGATGCCATAGCCCAAA
*
87372710 TATGGTTTTACAC
1 TATGGTCTTACAC
87372723 GTACTCTTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
42 47 0.96
43 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACAAAGTCTCATAGTGATGCCATAGCCCAAA
Found at i:87386712 original size:40 final size:39
Alignment explanation
Indices: 87386668--87386745 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
87386658 AATTCTTAAA
*
87386668 AAAAAAATTGTCAACTATGCCTAAATCTACTATTTTTCT
1 AAAAAAATTGTCAACTATGCCTAAATCTACTACTTTTCT
87386707 AAAAAAATTGTCAACTATGCCTAAATCTACTACTTTTCT
1 AAAAAAATTGTCAACTATGCCTAAATCTACTACTTTTCT
87386746 TACTTCTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37
Consensus pattern (39 bp):
AAAAAAATTGTCAACTATGCCTAAATCTACTACTTTTCT
Found at i:87396523 original size:42 final size:42
Alignment explanation
Indices: 87396461--87396582 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
87396451 TTACGATTTT
* * *
87396461 TGAGACTACGTGTAATACCATATCTGGGATATGGCATCGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* *
87396503 TGAGACTTCATGTAAGACCATAGCTGGGCTACTGGCATCGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
87396546 CGAGA-TTACATGTAAGACCATATCAGGGATATGGCAT
1 TGAGACTT-CATGTAAGACCATATCTGGGATATGGCAT
87396583 TGGTATGATA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (42 bp):
TGAGACTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:87416547 original size:12 final size:12
Alignment explanation
Indices: 87416530--87416555 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
87416520 CTTATAACAT
87416530 AAAAAAAACCAA
1 AAAAAAAACCAA
87416542 AAAAAAAACCAA
1 AAAAAAAACCAA
87416554 AA
1 AA
87416556 CTTAAGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAACCAA
Found at i:87417280 original size:18 final size:19
Alignment explanation
Indices: 87417248--87417286 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
87417238 CAAAACCCAT
*
87417248 AACACGGCCCATGTGGGCC
1 AACACGGCCCATGTGGCCC
*
87417267 AACAC-GCCCGTGTGGCCC
1 AACACGGCCCATGTGGCCC
87417285 AA
1 AA
87417287 TAAGCCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.23, C:0.38, G:0.28, T:0.10
Consensus pattern (19 bp):
AACACGGCCCATGTGGCCC
Found at i:87424562 original size:29 final size:28
Alignment explanation
Indices: 87424530--87424625 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 28
87424520 GCCCACTTGG
*
87424530 CATTCATATGGCTCATTAGGCCTAAATCA
1 CATTCATATGGC-CATTAGGCCCAAATCA
* *
87424559 CATTCGTATGGCCCGTTAGGCCCAAATCA
1 CATTCATATGG-CCATTAGGCCCAAATCA
* *
87424588 AATTCATAGGGCCTATTAGGCCCAAATCA
1 CATTCATATGGCC-ATTAGGCCCAAATCA
*
87424617 GATTCATAT
1 CATTCATAT
87424626 ACATGCTTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 2 0.04
29 53 0.95
30 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (28 bp):
CATTCATATGGCCATTAGGCCCAAATCA
Found at i:87424860 original size:16 final size:16
Alignment explanation
Indices: 87424836--87424871 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
87424826 GTAGCCAAAC
87424836 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTTGGCA
*
87424852 TTTCGGCTTTTTGGCA
1 TTTCAGCTTTTTGGCA
87424868 TTTC
1 TTTC
87424872 TAAATTTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTTGGCA
Found at i:87427657 original size:26 final size:24
Alignment explanation
Indices: 87427627--87427695 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
87427617 GACTCACCTT
87427627 AGCTCGTATGAGCTTACTGATATATC
1 AGCTCGTA-GAGCTTACTGAT-TATC
*
87427653 AGCTCGTAAGAGCTTACT-ATTCTC
1 AGCTCGT-AGAGCTTACTGATTATC
*
87427677 AGCTCATCAGAGCTTACTG
1 AGCTCGT-AGAGCTTACTG
87427696 TTTTAGCTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
24 19 0.50
25 2 0.05
26 16 0.42
27 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (24 bp):
AGCTCGTAGAGCTTACTGATTATC
Found at i:87427688 original size:24 final size:22
Alignment explanation
Indices: 87427627--87427715 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 22
87427617 GACTCACCTT
*
87427627 AGCTCGTATGAGCTTACTGATATATC
1 AGCTCATA-GAGCTTACT-AT-T-TC
*
87427653 AGCTCGTAAGAGCTTACTATTCTC
1 AGCTCAT-AGAGCTTACTATT-TC
* *
87427677 AGCTCATCAGAGCTTACTGTTTT
1 AGCTCAT-AGAGCTTACTATTTC
87427700 AGCTCAATAGAGCTTA
1 AGCTC-ATAGAGCTTA
87427716 TTGTCCATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
23 14 0.25
24 23 0.41
25 2 0.04
26 16 0.29
27 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (22 bp):
AGCTCATAGAGCTTACTATTTC
Found at i:87427711 original size:23 final size:24
Alignment explanation
Indices: 87427636--87427715 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
87427626 TAGCTCGTAT
* * *
87427636 GAGCTTACTGATATATCAGCTCGTAA
1 GAGCTTACT-AT-TCTCAGCTCATCA
87427662 GAGCTTACTATTCTCAGCTCATCA
1 GAGCTTACTATTCTCAGCTCATCA
* *
87427686 GAGCTTACTGTT-TTAGCTCAAT-A
1 GAGCTTACTATTCTCAGCTC-ATCA
87427709 GAGCTTA
1 GAGCTTA
87427716 TTGTCCATCA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.29
24 23 0.48
25 2 0.04
26 9 0.19
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (24 bp):
GAGCTTACTATTCTCAGCTCATCA
Found at i:87427913 original size:19 final size:19
Alignment explanation
Indices: 87427889--87427952 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
87427879 AAAAGCAATG
*
87427889 TGTTATACAGATGAATTAC
1 TGTTATACGGATGAATTAC
* *
87427908 TGTTATATGGATGAAGTAC
1 TGTTATACGGATGAATTAC
* *
87427927 TGTTTAAACGGATGAGTTAC
1 TG-TTATACGGATGAATTAC
87427947 TGTTAT
1 TGTTAT
87427953 GGAATGATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
19 21 0.58
20 15 0.42
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (19 bp):
TGTTATACGGATGAATTAC
Found at i:87427941 original size:20 final size:20
Alignment explanation
Indices: 87427898--87427950 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
87427888 GTGTTATACA
* * *
87427898 GATGAATTACTG-TTATATG
1 GATGAAGTACTGTTTAAACG
87427917 GATGAAGTACTGTTTAAACG
1 GATGAAGTACTGTTTAAACG
87427937 GATG-AGTTACTGTT
1 GATGAAG-TACTGTT
87427951 ATGGAATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (20 bp):
GATGAAGTACTGTTTAAACG
Found at i:87435492 original size:23 final size:23
Alignment explanation
Indices: 87435452--87435499 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
87435442 CCTCTAGCGG
*
87435452 CAGAATCGGGTTAGGGGGTGTTA
1 CAGAATCGGGTTAAGGGGTGTTA
87435475 CAGAATACGGG-TAAGGGGTGTTA
1 CAGAAT-CGGGTTAAGGGGTGTTA
87435498 CA
1 CA
87435500 ATAAGCTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.27, C:0.10, G:0.40, T:0.23
Consensus pattern (23 bp):
CAGAATCGGGTTAAGGGGTGTTA
Found at i:87440413 original size:26 final size:26
Alignment explanation
Indices: 87440384--87440436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
87440374 GCCATATTTG
87440384 TCCACTCATAATAACAATGATCTAAT
1 TCCACTCATAATAACAATGATCTAAT
*
87440410 TCCACTCATAATAACAATGGTCTAAT
1 TCCACTCATAATAACAATGATCTAAT
87440436 T
1 T
87440437 ACAACATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
TCCACTCATAATAACAATGATCTAAT
Found at i:87456556 original size:27 final size:27
Alignment explanation
Indices: 87456527--87456840 Score: 366
Period size: 27 Copynumber: 11.7 Consensus size: 27
87456517 ATTGGTTTAC
* ** * *
87456527 AAAATTACCAAAATACCCTTAATTAGC
1 AAAATTACCGAAATACCCTCGATTTGT
** *
87456554 AAAATTATTGAAATACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * *
87456581 AAAATTACCGAAATACCCCCAATTTGC
1 AAAATTACCGAAATACCCTCGATTTGT
*
87456608 AAAATTACCGAAATA-CCTCTGATTTGC
1 AAAATTACCGAAATACCCTC-GATTTGT
*
87456635 AAAATTACCGAAATACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* * * *
87456662 AAAATTATCAAAATACCCTTG-TAGTGT
1 AAAATTACCGAAATACCCTCGAT-TTGT
* **
87456689 AGAATTACTAAAATACCC-CGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
*
87456715 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
87456742 AAAATTACCGAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
* *
87456769 AAAATTACCAAAATACCCCCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
87456796 AAAATTACCGAAATACCC-CGATTTGT
1 AAAATTACCGAAATACCCTCGATTTGT
*
87456822 AAAATTATCGAAATACCCT
1 AAAATTACCGAAATACCCT
87456841 TGTAGTGTAA
Statistics
Matches: 246, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
26 48 0.20
27 195 0.79
28 3 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGATTTGT
Found at i:87456756 original size:134 final size:135
Alignment explanation
Indices: 87456527--87456813 Score: 427
Period size: 134 Copynumber: 2.1 Consensus size: 135
87456517 ATTGGTTTAC
* * * * * *
87456527 AAAATTACCAAAATACCCTT-AATTAGCAAAATTATTGAAATACCCCCGATTTGTAAAATTACCG
1 AAAATTACCAAAATACCCTTGTAGT-GTAGAATTACTAAAATACCCCCGATTTGTAAAATTACCG
*
87456591 AAATACCCCCAATTTGCAAAATTACCGAAATA-CCTCTGATTTGCAAAATTACCGAAATACCCCC
65 AAATACCCCCAATTTGCAAAATTACCGAAATACCCTC-GATTTGCAAAATTACCAAAATACCCCC
87456655 GATTTGT
129 GATTTGT
*
87456662 AAAATTATCAAAATACCCTTGTAGTGTAGAATTACTAAAATA-CCCCGATTTGTAAAATTACCGA
1 AAAATTACCAAAATACCCTTGTAGTGTAGAATTACTAAAATACCCCCGATTTGTAAAATTACCGA
* * *
87456726 AATACCCTCAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCGA
66 AATACCCCCAATTTGCAAAATTACCGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCGA
87456791 TTTGT
131 TTTGT
*
87456796 AAAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
87456814 CGATTTGTAA
Statistics
Matches: 137, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
134 99 0.72
135 36 0.26
136 2 0.01
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (135 bp):
AAAATTACCAAAATACCCTTGTAGTGTAGAATTACTAAAATACCCCCGATTTGTAAAATTACCGA
AATACCCCCAATTTGCAAAATTACCGAAATACCCTCGATTTGCAAAATTACCAAAATACCCCCGA
TTTGT
Found at i:87456853 original size:107 final size:107
Alignment explanation
Indices: 87456527--87456842 Score: 402
Period size: 107 Copynumber: 2.9 Consensus size: 107
87456517 ATTGGTTTAC
* ** * * **
87456527 AAAATTACCAAAATACCCTTAATTAGCAAAATTATTGAAATACCCCCGATTTGTAAAATTACCGA
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTACCGA
* * *
87456592 AATACCCCCAATTTGCAAAATTACCGAAATA-CCTCTGATTTGC
66 AATA-CCCCGATTTGTAAAATTACCGAAATACCCT-TGATTTGT
* ** * * **
87456635 AAAATTACCGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTG-TAGTGTAGAATTACTA
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCCGAT-TTGTAAAATTACCG
**
87456699 AAATACCCCGATTTGTAAAATTACCGAAATACCCTCAATTTGT
65 AAATACCCCGATTTGTAAAATTACCGAAATACCCTTGATTTGT
*
87456742 AAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCGATTTGTAAAATTACCGA
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTACCGA
*
87456807 AATACCCCGATTTGTAAAATTATCGAAATACCCTTG
66 AATACCCCGATTTGTAAAATTACCGAAATACCCTTG
87456843 TAGTGTAAAA
Statistics
Matches: 175, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
107 118 0.67
108 57 0.33
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (107 bp):
AAAATTACCGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCCGATTTGTAAAATTACCGA
AATACCCCGATTTGTAAAATTACCGAAATACCCTTGATTTGT
Found at i:87457154 original size:41 final size:41
Alignment explanation
Indices: 87457109--87457215 Score: 124
Period size: 41 Copynumber: 2.6 Consensus size: 41
87457099 AGGAAGTATA
*
87457109 TGAGGATCACATGGTTGCTTGACGACCGTGGACCCACCGAT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGACCCACCGAT
* * * * **
87457150 TGAGGATCGCATGGTTGTTTGATGACTGTGGATCCATTGAT
1 TGAGGATCGCATGGTTGCTTGACGACCGTGGACCCACCGAT
* * *
87457191 TAAGGATCGTATGGTTTCTTGACGA
1 TGAGGATCGCATGGTTGCTTGACGA
87457216 TAGTGGATCC
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (41 bp):
TGAGGATCGCATGGTTGCTTGACGACCGTGGACCCACCGAT
Found at i:87458455 original size:16 final size:16
Alignment explanation
Indices: 87458434--87458472 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
87458424 GTTTCTAATG
*
87458434 AAAACATGATTTTCGA
1 AAAACACGATTTTCGA
87458450 AAAACACGATTTTCGA
1 AAAACACGATTTTCGA
87458466 AAAACAC
1 AAAACAC
87458473 TTCAATGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.23
Consensus pattern (16 bp):
AAAACACGATTTTCGA
Found at i:87459475 original size:49 final size:49
Alignment explanation
Indices: 87459422--87459596 Score: 181
Period size: 49 Copynumber: 3.6 Consensus size: 49
87459412 ATACGAGGGA
** * *
87459422 CCACTGGTAGGATATGTTAGTTGGTAATCAGATTAGCGTATATGTTGGG
1 CCACTGGTAGGGCATGTTAGTTGCTAATCAGATTGGCGTATATGTTGGG
** * * * **
87459471 CCACTAATAGGGCATGTCAGTTGCTAATCA-AGTTGGCGGAGATGAGGGG
1 CCACTGGTAGGGCATGTTAGTTGCTAATCAGA-TTGGCGTATATGTTGGG
* * * *
87459520 CCAATGGTAGGGCATGTTAGTTGCTAACCAGATTGGTGTATGTGTTGGG
1 CCACTGGTAGGGCATGTTAGTTGCTAATCAGATTGGCGTATATGTTGGG
**
87459569 TTACTGGTAGGGCATGTTAGTTGCTAAT
1 CCACTGGTAGGGCATGTTAGTTGCTAAT
87459597 TAGCCTGGCA
Statistics
Matches: 98, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
48 1 0.01
49 96 0.98
50 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.31
Consensus pattern (49 bp):
CCACTGGTAGGGCATGTTAGTTGCTAATCAGATTGGCGTATATGTTGGG
Found at i:87459585 original size:98 final size:98
Alignment explanation
Indices: 87459416--87459596 Score: 236
Period size: 98 Copynumber: 1.8 Consensus size: 98
87459406 ATCTGGATAC
* * * *
87459416 GAGGGACCACTGGTAGGATATGTTAGTTGGTAATCAGATTAGCGTATATGTTGGGCCACTAATAG
1 GAGGGACCAATGGTAGGACATGTTAGTTGCTAACCAGATTAGCGTATATGTTGGGCCACTAATAG
87459481 GGCATGTCAGTTGCTAATCAAGTTGGCGGAGAT
66 GGCATGTCAGTTGCTAATCAAGTTGGCGGAGAT
* * * * * ** **
87459514 GAGGGGCCAATGGTAGGGCATGTTAGTTGCTAACCAGATTGGTGTATGTGTTGGGTTACTGGTAG
1 GAGGGACCAATGGTAGGACATGTTAGTTGCTAACCAGATTAGCGTATATGTTGGGCCACTAATAG
*
87459579 GGCATGTTAGTTGCTAAT
66 GGCATGTCAGTTGCTAAT
87459597 TAGCCTGGCA
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
98 69 1.00
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.30
Consensus pattern (98 bp):
GAGGGACCAATGGTAGGACATGTTAGTTGCTAACCAGATTAGCGTATATGTTGGGCCACTAATAG
GGCATGTCAGTTGCTAATCAAGTTGGCGGAGAT
Found at i:87467001 original size:26 final size:26
Alignment explanation
Indices: 87466972--87467079 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
87466962 TGATACAAAT
*
87466972 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87466998 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87467024 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87467050 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87467076 TGAT
1 TGAT
87467080 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87475118 original size:26 final size:26
Alignment explanation
Indices: 87475089--87475196 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87475079 TGATACAAAT
87475089 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87475115 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87475141 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87475167 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87475193 TGAT
1 TGAT
87475197 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87476718 original size:24 final size:25
Alignment explanation
Indices: 87476682--87476729 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
87476672 ACAGTTTTAC
*
87476682 CCCTAGTGATAAATT-ACCGAAATA
1 CCCTAGGGATAAATTGACCGAAATA
* *
87476706 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
87476730 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.27
Consensus pattern (25 bp):
CCCTAGGGATAAATTGACCGAAATA
Found at i:87480911 original size:26 final size:26
Alignment explanation
Indices: 87480882--87480963 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
87480872 TGATACAAAT
87480882 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87480908 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87480934 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87480960 TGAT
1 TGAT
87480964 GTGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87482140 original size:8 final size:8
Alignment explanation
Indices: 87482127--87482156 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
87482117 AGATCGGCAC
87482127 AAGCCGAA
1 AAGCCGAA
87482135 AAGCCGAA
1 AAGCCGAA
*
87482143 ATGCCGAA
1 AAGCCGAA
87482151 AAGCCG
1 AAGCCG
87482157 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:87482585 original size:27 final size:27
Alignment explanation
Indices: 87482543--87482653 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
87482533 AGGAAGCGTC
*
87482543 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
87482570 CTGGTGGCTCTTCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
87482597 CTGGTGGC-CTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
* * * *
87482624 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
87482650 CTGG
1 CTGG
87482654 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 17 0.24
27 47 0.67
28 6 0.09
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:87482646 original size:53 final size:54
Alignment explanation
Indices: 87482543--87482653 Score: 147
Period size: 53 Copynumber: 2.1 Consensus size: 54
87482533 AGGAAGCGTC
*
87482543 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTTCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTTCCACATATATCTGTT
* * *
87482597 CTGGTGGC-CTGCCACGATTATCTGTATCTGGTGACTCTGT-CACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCT-TCCACATATATCTGTT
87482650 CTGG
1 CTGG
87482654 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
53 25 0.49
54 25 0.49
55 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTTCCACATATATCTGTT
Found at i:87487834 original size:26 final size:26
Alignment explanation
Indices: 87487805--87487912 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
87487795 TGATACAAAT
87487805 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87487831 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87487857 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87487883 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87487909 TGAT
1 TGAT
87487913 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87489607 original size:27 final size:26
Alignment explanation
Indices: 87489506--87489616 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 26
87489496 AGGAAGCGTC
* * * *
87489506 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
*
87489533 CTGGTGGCTCTACCACACATATCTGTT
1 CTGGTGGCTCTACCACA-TTATCTGTT
*
87489560 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTACCAC-ATTATCTGT-T
* *
87489588 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGTT
87489614 CTG
1 CTG
87489617 ACAGCCATGC
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 5 0.07
27 53 0.73
28 15 0.21
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGTT
Found at i:87489610 original size:54 final size:54
Alignment explanation
Indices: 87489506--87489616 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
87489496 AGGAAGCGTC
*
87489506 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTACCACACATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACACATATCTGTT
* * * * *
87489560 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACA-TTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTACCACACATATCTGTT
87489614 CTG
1 CTG
87489617 ACAGCCATGC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACACATATCTGTT
Found at i:87493876 original size:27 final size:26
Alignment explanation
Indices: 87493829--87493886 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
87493819 ACCCCCGTCA
87493829 CCTC-CTCATATCTCATCTCACACATT
1 CCTCACTCATATCTCATCTCAC-CATT
*
87493855 CCTCACTCATCTCTTCAT-TCACCATT
1 CCTCACTCATATC-TCATCTCACCATT
87493881 CACTCA
1 C-CTCA
87493887 TTTCCTTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 9 0.32
27 15 0.54
28 4 0.14
ACGTcount: A:0.22, C:0.43, G:0.00, T:0.34
Consensus pattern (26 bp):
CCTCACTCATATCTCATCTCACCATT
Found at i:87498439 original size:2 final size:2
Alignment explanation
Indices: 87498432--87498463 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
87498422 ATTATGGTTG
*
87498432 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87498464 TGATTTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87499378 original size:17 final size:18
Alignment explanation
Indices: 87499342--87499378 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
87499332 ATTAATGAAG
87499342 TTAGTGGATGTGTATGGT
1 TTAGTGGATGTGTATGGT
87499360 TTAGTGGATGTGT-TGGT
1 TTAGTGGATGTGTATGGT
87499377 TT
1 TT
87499379 GGTATTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.49
Consensus pattern (18 bp):
TTAGTGGATGTGTATGGT
Found at i:87499451 original size:24 final size:24
Alignment explanation
Indices: 87499419--87499469 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
87499409 GGTAAATAAG
87499419 TAAATTGGTAAATAAAGTTAAAAT
1 TAAATTGGTAAATAAAGTTAAAAT
87499443 TAAATTGGTAAATAAAGTTAAAAT
1 TAAATTGGTAAATAAAGTTAAAAT
87499467 TAA
1 TAA
87499470 GTAAAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (24 bp):
TAAATTGGTAAATAAAGTTAAAAT
Found at i:87500546 original size:40 final size:40
Alignment explanation
Indices: 87500237--87500538 Score: 388
Period size: 40 Copynumber: 7.5 Consensus size: 40
87500227 TTATACTTAA
**
87500237 ATTGCACATACGTGCCATTGTTTGTACTTCGGTACCCCTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* *
87500277 ATTGCACATATGTGCCCCTGTTTGTACTTCGGTACTCCTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * *
87500317 ATTGAACATACGTGCACTTGTTTGTACTTCGATACCCCTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * * *
87500357 ATTTCACATTCGTGCCCTTATTTGTACTTCGGTACCCTTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * *
87500397 ATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCTTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * *
87500437 ATTGCATATACATACCCCTGTTTGTACTTCGATACCCCTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * *
87500477 ATTGCACCTACGTGCCCCAGTTTGTACTTCAGTACCCCTG
1 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
*
87500517 ATTGCATATACGTGCCCCTGTT
1 ATTGCACATACGTGCCCCTGTT
87500539 AACACTTCGG
Statistics
Matches: 224, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 224 1.00
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.36
Consensus pattern (40 bp):
ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
Found at i:87518112 original size:23 final size:23
Alignment explanation
Indices: 87518082--87518125 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
87518072 ATCTCGAGGG
87518082 TTACTCGGGCGATATACAGTAGA
1 TTACTCGGGCGATATACAGTAGA
*
87518105 TTACTCGGGTGATATACAGTA
1 TTACTCGGGCGATATACAGTA
87518126 CATATAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (23 bp):
TTACTCGGGCGATATACAGTAGA
Found at i:87518261 original size:23 final size:21
Alignment explanation
Indices: 87518210--87518263 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
87518200 GCTGATGGAT
* *
87518210 AGTAAGCACTATTGAGTTGAA
1 AGTAAGCTCTATCGAGTTGAA
87518231 ATGATAAGCTCTATCGAGTTGGAA
1 A-G-TAAGCTCTATCGAGTT-GAA
87518255 CAGTAAGCT
1 -AGTAAGCT
87518264 TATACAATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 1 0.04
22 1 0.04
23 20 0.74
24 4 0.15
25 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (21 bp):
AGTAAGCTCTATCGAGTTGAA
Found at i:87518884 original size:17 final size:19
Alignment explanation
Indices: 87518842--87518885 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
87518832 ATGAAATTTT
*
87518842 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
87518861 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
87518879 AA-TATTA
1 AATTATTA
87518886 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:87521416 original size:20 final size:20
Alignment explanation
Indices: 87521393--87521449 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
87521383 TAAACATGGT
87521393 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
87521413 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
87521433 ATGTATGATATGCACAT
1 ATGTATGATATGCACAT
87521450 AATGTATTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:87521433 original size:11 final size:11
Alignment explanation
Indices: 87521397--87521449 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
87521387 CATGGTATGT
87521397 ATGATATGCAC
1 ATGATATGCAC
* *
87521408 ATGACATG--T
1 ATGATATGCAC
87521417 ATGATATGCAC
1 ATGATATGCAC
*
87521428 ATGATATG--T
1 ATGATATGCAC
87521437 ATGATATGCAC
1 ATGATATGCAC
87521448 AT
1 AT
87521450 AATGTATTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:87521582 original size:24 final size:24
Alignment explanation
Indices: 87521502--87521645 Score: 222
Period size: 23 Copynumber: 6.0 Consensus size: 24
87521492 GAGGAAGTGC
87521502 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
87521526 -AAAGGGCTTATGCCCCAGTTATGAT
1 AAAAGGGCTTATGCCCCAGTTAT--T
87521551 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
87521575 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
87521599 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87521622 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87521646 ATGATCAAGC
Statistics
Matches: 113, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
23 41 0.36
24 41 0.36
25 9 0.08
26 22 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:87522755 original size:13 final size:13
Alignment explanation
Indices: 87522737--87522761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87522727 TAATTTATAT
87522737 GTGTGAAAATTTC
1 GTGTGAAAATTTC
87522750 GTGTGAAAATTT
1 GTGTGAAAATTT
87522762 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:87523825 original size:81 final size:80
Alignment explanation
Indices: 87523679--87523839 Score: 243
Period size: 81 Copynumber: 2.0 Consensus size: 80
87523669 AAATACATGT
*
87523679 CGTTAAATTTGATTGTATATATTATATTTCTGTGAATTGAACTATTGCTTGTATATATACATTTA
1 CGTTAAATTTGATTGTATATATTATATTTCTGCGAATTGAACTATTGCTTGTATATATACATTTA
87523744 AG-CTGAATTTGTTTA
66 AGTC-GAATTTGTTTA
* * * **
87523759 CGTTAAATTTGATTGTCTATATTATATTTGTGCCGAATTGAACTATTGTTTGTATATATATGTTT
1 CGTTAAATTTGATTGTATATATTATATTTCTG-CGAATTGAACTATTGCTTGTATATATACATTT
87523824 AAGTCGAATTTGTTTA
65 AAGTCGAATTTGTTTA
87523840 AGTATGGAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
80 30 0.41
81 42 0.58
82 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (80 bp):
CGTTAAATTTGATTGTATATATTATATTTCTGCGAATTGAACTATTGCTTGTATATATACATTTA
AGTCGAATTTGTTTA
Done.