Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 296 of 410
Found at i:91397794 original size:38 final size:38
Alignment explanation
Indices: 91397743--91397819 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
91397733 TATGAAATAA
91397743 GAAAATTTCGTTAGTAAAAGTGATCTGGCATCGACACG
1 GAAAATTTCGTTAGTAAAAGTGATCTGGCATCGACACG
91397781 GAAAATTTCGTTAGTAAAAGTGATCTGGCATCGACACG
1 GAAAATTTCGTTAGTAAAAGTGATCTGGCATCGACACG
91397819 G
1 G
91397820 TATTGAAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (38 bp):
GAAAATTTCGTTAGTAAAAGTGATCTGGCATCGACACG
Found at i:91399212 original size:44 final size:42
Alignment explanation
Indices: 91399145--91399288 Score: 141
Period size: 44 Copynumber: 3.4 Consensus size: 42
91399135 CAATATGTGT
* * ** *
91399145 TTTCGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCATGTTTGGGACATCGGCATCGTA-TT-TGA
*
91399188 TTTATGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGA
*
91399231 TTTCGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTTTGGGACA-TCGGCATCG-TATTTGA
*
91399274 TTACAG-GTAAGACCA
1 TTTC-GTGTAAGACCA
91399289 CATCTAGGAT
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
42 28 0.33
43 28 0.33
44 29 0.34
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGA
Found at i:91399285 original size:43 final size:42
Alignment explanation
Indices: 91399148--91399288 Score: 135
Period size: 42 Copynumber: 3.3 Consensus size: 42
91399138 TATGTGTTTT
* * ** *
91399148 CGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCATGTTTGGGACATCGGCATCGTA-TT-TGA-TTA
* *
91399192 TGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTT
1 CGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTA
*
91399234 CGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATTTGATTA
1 CGTGTAAGACCATGTTTGGGACA-TCGGCATCG-TATTTGATTA
91399277 CAG-GTAAGACCA
1 C-GTGTAAGACCA
91399289 CATCTAGGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.37
43 22 0.27
44 29 0.35
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTA
Found at i:91399522 original size:21 final size:19
Alignment explanation
Indices: 91399481--91399523 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
91399471 CATATGAATT
* *
91399481 ATGTTTGTATTATGTGGAA
1 ATGTTTGTATTATGAGAAA
91399500 ATGTGTTGTATATATGAGAAA
1 ATGT-TTGTAT-TATGAGAAA
91399521 ATG
1 ATG
91399524 GTTATGAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.42
Consensus pattern (19 bp):
ATGTTTGTATTATGAGAAA
Found at i:91401789 original size:39 final size:39
Alignment explanation
Indices: 91401733--91401895 Score: 227
Period size: 39 Copynumber: 4.2 Consensus size: 39
91401723 TGTGTATGAA
* *
91401733 TGTGCGAATTGTAATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
91401772 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * *
91401811 GGTGCGAGCTATGATATTCGGGCTAAGCTCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91401850 TGTGCAAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
91401890 TGTGCG
1 TGTGCG
91401896 GGTTACCATA
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 92 0.86
40 15 0.14
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91406859 original size:48 final size:48
Alignment explanation
Indices: 91406788--91406920 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
91406778 ACTAGGGTTT
* * *
91406788 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCAGCT-TCGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GCTATCGA
* * *
91406836 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGCTATCGA
* * *
91406884 TTTATGAGCTAGTGTAAGACCATGTTTGGAACATGGC
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGC
91406921 CTCGACATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
47 2 0.03
48 73 0.97
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGCTATCGA
Found at i:91411597 original size:13 final size:13
Alignment explanation
Indices: 91411579--91411604 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91411569 CAAAATCATA
91411579 ATTATAATAATTT
1 ATTATAATAATTT
91411592 ATTATAATAATTT
1 ATTATAATAATTT
91411605 CGGTAAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:91413914 original size:40 final size:40
Alignment explanation
Indices: 91413757--91413933 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
91413747 GGATGATAAC
* *
91413757 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
* *
91413796 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATC
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
91413837 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
*
91413877 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATA-T
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATT
* * *
91413916 CCGGCTAAATCGCGAAGG
1 CGGGCTAAGTCCCGAAGG
91413934 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 18 0.14
40 105 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
Found at i:91418573 original size:40 final size:40
Alignment explanation
Indices: 91418518--91418599 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
91418508 TATCCTTTTT
*
91418518 TATTTGGTCCCTGAACTGCACAAATTTGGACGTCGGGCCA
1 TATTTGGTCCCTGAACTGCACAAATTTGGACATCGGGCCA
*
91418558 TATTTGGTCCCTGAACTGCACGAATTTGGACATCGGGCCA
1 TATTTGGTCCCTGAACTGCACAAATTTGGACATCGGGCCA
91418598 TA
1 TA
91418600 CATATTGAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (40 bp):
TATTTGGTCCCTGAACTGCACAAATTTGGACATCGGGCCA
Found at i:91423730 original size:21 final size:21
Alignment explanation
Indices: 91423704--91423761 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
91423694 TTGATTTTAG
*
91423704 GGCTATGTCGCAACACCCTCT
1 GGCTATGTCGCGACACCCTCT
91423725 GGCTATGTCGCGACACCCTCT
1 GGCTATGTCGCGACACCCTCT
* *
91423746 GGTTGTGTCGCGACAC
1 GGCTATGTCGCGACAC
91423762 TGAAGGCAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (21 bp):
GGCTATGTCGCGACACCCTCT
Found at i:91436965 original size:29 final size:29
Alignment explanation
Indices: 91436932--91437005 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
91436922 GTGACGAGAT
91436932 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
91436961 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
91436990 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91437006 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:91437021 original size:29 final size:29
Alignment explanation
Indices: 91436989--91437064 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
91436979 CTGGAAATAT
* *
91436989 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
91437018 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
91437047 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
91437065 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:91443600 original size:13 final size:13
Alignment explanation
Indices: 91443582--91443610 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91443572 TCTAGTTTAA
91443582 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91443595 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91443608 TTA
1 TTA
91443611 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:91443927 original size:19 final size:19
Alignment explanation
Indices: 91443903--91443941 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91443893 GCAATTTAAT
91443903 TTAATTTTA-TTATTATTTC
1 TTAA-TTTACTTATTATTTC
*
91443922 TTAATTTACTTATTCTTTC
1 TTAATTTACTTATTATTTC
91443941 T
1 T
91443942 CTTGGCAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (19 bp):
TTAATTTACTTATTATTTC
Found at i:91446199 original size:28 final size:28
Alignment explanation
Indices: 91446166--91446234 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
91446156 GCGTAGATCA
91446166 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
91446194 TGAAATTACCTCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
91446222 CGATA-TACCCCTA
1 CGAAATTACCCCTA
91446235 GGGTTTTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 7 0.19
28 29 0.81
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:91450612 original size:29 final size:29
Alignment explanation
Indices: 91450511--91450604 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
91450501 GTGACGAGAT
91450511 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
91450540 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
91450569 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
91450598 CGGCACT
1 TGGCACT
91450605 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:91450629 original size:58 final size:58
Alignment explanation
Indices: 91450507--91450641 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
91450497 TACGGTGACG
* *
91450507 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
91450564 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
91450622 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
91450642 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:91450710 original size:2 final size:2
Alignment explanation
Indices: 91450705--91450753 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
91450695 GTGCGTACTC
91450705 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91450747 TA TA TA T
1 TA TA TA T
91450754 CTCCGATCGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91458628 original size:29 final size:29
Alignment explanation
Indices: 91458595--91458659 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
91458585 GTGACGAGAT
91458595 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
91458624 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
91458653 CGGCACT
1 TGGCACT
91458660 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:91458765 original size:2 final size:2
Alignment explanation
Indices: 91458760--91458788 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91458750 GTGCGTACTC
91458760 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91458789 CTCCGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91461639 original size:28 final size:28
Alignment explanation
Indices: 91461607--91461660 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
91461597 CGTAGATCAC
91461607 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
91461635 GAAATTACCCCTAAAGAGCAAAATTA
1 GAAATTACCCCTAAAGAGCAAAATTA
91461661 TCGATATACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.20
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:91465198 original size:40 final size:40
Alignment explanation
Indices: 91465153--91465320 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
91465143 CGGAATATAA
91465153 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
91465193 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
91465233 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
91465273 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
91465313 CCGGATAT
1 CCGGATAT
91465321 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91473210 original size:40 final size:40
Alignment explanation
Indices: 91473165--91473332 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
91473155 CGGAATATAA
91473165 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
91473205 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
91473245 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
91473285 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
91473325 CCGGATAT
1 CCGGATAT
91473333 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91482504 original size:40 final size:40
Alignment explanation
Indices: 91482459--91482624 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
91482449 CGGAATATAA
91482459 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
91482499 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
91482539 CCGGATATAGCCACTAGCACAATTG-CTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
91482578 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAG-
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
91482617 CCGGATAT
1 CCGGATAT
91482625 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 41 0.39
40 64 0.61
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:91490912 original size:13 final size:13
Alignment explanation
Indices: 91490894--91490922 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91490884 TCTAGTTTAA
91490894 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91490907 TTAGTTAATTAGT
1 TTAGTTAATTAGT
91490920 TTA
1 TTA
91490923 ATAAATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:91491244 original size:17 final size:17
Alignment explanation
Indices: 91491224--91491279 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
91491214 CATACAACCA
91491224 ACATAATAATACCAATC
1 ACATAATAATACCAATC
*
91491241 ACATTAATCA-ACC-AT-
1 ACA-TAATAATACCAATC
*
91491256 TCATAATAATACCAATC
1 ACATAATAATACCAATC
*
91491273 ATATAAT
1 ACATAAT
91491280 CATTCAGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 5 0.17
15 5 0.17
16 4 0.13
17 11 0.37
18 5 0.17
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (17 bp):
ACATAATAATACCAATC
Found at i:91491274 original size:15 final size:15
Alignment explanation
Indices: 91491220--91491279 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
91491210 CATACATACA
91491220 ACCAA-CATAATAAT
1 ACCAATCATAATAAT
* *
91491234 ACCAATCACATTAAT
1 ACCAATCATAATAAT
*
91491249 CAACCATTCATAATAAT
1 --ACCAATCATAATAAT
91491266 ACCAATCAT-ATAAT
1 ACCAATCATAATAAT
91491280 CATTCAGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
14 10 0.27
15 15 0.41
17 12 0.32
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (15 bp):
ACCAATCATAATAAT
Found at i:91494834 original size:44 final size:42
Alignment explanation
Indices: 91494769--91494876 Score: 144
Period size: 44 Copynumber: 2.5 Consensus size: 42
91494759 ATATGTGTTA
* * * *
91494769 TTGTGTAAGACCATGTTTGGGACGTTAGCATCGATTTTTGATT
1 TTGTGTAAGACCATGTCTGGGACATTAGCATCG-TATATGATT
*
91494812 TATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 T-TGTGTAAGACCATGTCTGGGACATTAGCATCGTATATGATT
*
91494855 TCGTGTAAGACCATGTCTGGGA
1 TTGTGTAAGACCATGTCTGGGA
91494877 TAGTGGCATT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 20 0.34
43 9 0.16
44 29 0.50
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (42 bp):
TTGTGTAAGACCATGTCTGGGACATTAGCATCGTATATGATT
Found at i:91494872 original size:42 final size:43
Alignment explanation
Indices: 91494771--91494928 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
91494761 ATGTGTTATT
* * * * *
91494771 GTGTAAGACCATGTTTGGGACGTTAGCATCGATTTTTGATTTAT
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTT-C
*
91494815 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTC
* * * * * *
91494857 GTGTAAGACCATGTCTGGGATAGTGGCATTGATCTTTTATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTC
* * *
91494900 ATGTAAGACCACGTTTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
91494929 TTTATGAGAT
Statistics
Matches: 95, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 28 0.29
43 39 0.41
44 28 0.29
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTC
Found at i:91499472 original size:46 final size:46
Alignment explanation
Indices: 91499395--91499615 Score: 164
Period size: 46 Copynumber: 4.7 Consensus size: 46
91499385 CATTAGGTGG
* *
91499395 TATGTGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGTCACAT
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGTCACAT
* * * *
91499441 TATGAGAGCTAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGG
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGTCAC-A-T
* * * **
91499489 TAT-ACAAGCTAGTGTAAGACCTGTTTGGGACATGGCATCAG-CTTAT
1 TATGA-GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGTCACAT
* * * * * *
91499535 TGTGTG-TC-AGAGTAAGACCTGTCTGGGACATGACATCGACATCGACA-
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATG-CATC-A-GTC-ACAT
* *
91499582 GATGAGAGCTAGTGTAAGACTTGTCTGGGACATG
1 TATGAGAGCTAGTGTAAGACATGTCTGGGACATG
91499616 GCATTGGCCT
Statistics
Matches: 136, Mismatches: 27, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 25 0.18
45 2 0.01
46 41 0.30
47 7 0.05
48 32 0.24
49 28 0.21
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (46 bp):
TATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGTCACAT
Found at i:91504466 original size:2 final size:2
Alignment explanation
Indices: 91504461--91504504 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
91504451 TATATATATA
91504461 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
91504503 TG
1 TG
91504505 ATGCCGAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:91504798 original size:43 final size:43
Alignment explanation
Indices: 91504672--91504829 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 43
91504662 ATGTGTTATT
* * * *
91504672 GTGTAAGACTACGTCTGGGACGTTGGCATCAAT-TTGTGATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATT-TGATTT-C
* *
91504716 GTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTC
* * *
91504758 GTGTAAGACCCTGTCTGGGACAATGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTC
* *
91504801 ATGTAAGACCAGGTCTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
91504830 TGTACGAAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 29 0.30
43 41 0.42
44 27 0.28
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTC
Found at i:91508798 original size:27 final size:25
Alignment explanation
Indices: 91508752--91508805 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
91508742 TTTCTTGAAT
*
91508752 AAATATTTTTCCTTGAAGTTCTAGA
1 AAATATTTTTCCTTGAAGTTCGAGA
91508777 AAATATTTTTCAACTTTG-AGTTCGAGA
1 AAATATTTTTC--C-TTGAAGTTCGAGA
91508804 AA
1 AA
91508806 TTTTAAGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 11 0.44
27 11 0.44
28 3 0.12
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (25 bp):
AAATATTTTTCCTTGAAGTTCGAGA
Found at i:91521035 original size:50 final size:50
Alignment explanation
Indices: 91520918--91521096 Score: 188
Period size: 48 Copynumber: 3.6 Consensus size: 50
91520908 TATAATGTCA
* * *
91520918 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAATCAAG-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATC-TGTGCCG
* *
91520967 ACGCCATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCACATATCTGTGCCG
* * * * * **
91521017 ATGCCATGTCCTAGACATGATCTTACACTGACAC-CTC-TATATGTGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCTGTGCCG
*
91521065 ATGCCATGTCCCAGACATGGTATTACACTGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC
91521097 GCATCTCATA
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
48 38 0.35
49 35 0.32
50 35 0.32
51 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCTGTGCCG
Found at i:91521228 original size:48 final size:47
Alignment explanation
Indices: 91520918--91521232 Score: 175
Period size: 46 Copynumber: 6.6 Consensus size: 47
91520908 TATAATGTCA
* * ** *
91520918 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTG-CTCTC-ATCTCAATGCCG
* * **
91520967 ACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCTGTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-GCTCT--CATCTCAATGCCG
* * * * **
91521017 ATGCCATGTCCTAGACATGATCTTACACTGACAC-C-TCT-ATATGTGTTG
1 ATGCCATGTCCCAAACATGGTCTTACACTG-CTCTCATCTCA-A--TGCCG
* * * *
91521065 ATGCCATGTCCCAGACATGGTATTACACTG-ACGCATCTC-ATAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGCTCTCATCTCAAT-GCCG
* * * * *
91521111 ATG-TATGTCCTAAACAT-GTTTTACACTGGCT-TACATCTCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-GCTCT-CATCTCAATGCCG
* * *
91521157 ATG-CATGT-CCAAGATAT-GTCTTACACTAGCTCTCGTCTCAATGCTG
1 ATGCCATGTCCCAA-ACATGGTCTTACACT-GCTCTCATCTCAATGCCG
*
91521203 ATGTCATGTCCCAAACATGGTCTTACACTG
1 ATGCCATGTCCCAAACATGGTCTTACACTG
91521233 GCCCTCATAA
Statistics
Matches: 207, Mismatches: 39, Indels: 42
0.72 0.14 0.15
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 53 0.26
47 14 0.07
48 47 0.23
49 31 0.15
50 36 0.17
51 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGCTCTCATCTCAATGCCG
Found at i:91526708 original size:11 final size:11
Alignment explanation
Indices: 91526692--91526725 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
91526682 TTTTCACATT
91526692 TTAATAGTTAG
1 TTAATAGTTAG
91526703 TTAATAGTTAG
1 TTAATAGTTAG
91526714 TT-A-AGTTAG
1 TTAATAGTTAG
91526723 TTA
1 TTA
91526726 TTTGATGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.36
10 1 0.05
11 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (11 bp):
TTAATAGTTAG
Found at i:91531092 original size:48 final size:48
Alignment explanation
Indices: 91531021--91531204 Score: 215
Period size: 48 Copynumber: 3.8 Consensus size: 48
91531011 GTAAGATACT
* *
91531021 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCC
* * * *** * *
91531069 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCC
*
91531117 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCC
* * * * * *
91531165 AATGACATGTTCCAAACATGGTTTTACACTGGCTCACATA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA
91531205 TTGAGGCCAA
Statistics
Matches: 110, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCC
Found at i:91531183 original size:96 final size:96
Alignment explanation
Indices: 91531019--91531211 Score: 350
Period size: 96 Copynumber: 2.0 Consensus size: 96
91531009 GGGTAAGATA
* * *
91531019 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATGCCGATGCCATGTTCCAA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
91531084 ACATGGTCTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
91531115 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
*
91531180 ACATGGTTTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
91531211 C
1 C
91531212 CAATTTCTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (96 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
ACATGGTCTTACACTGGCTCACATATTGAGG
Found at i:91537937 original size:55 final size:53
Alignment explanation
Indices: 91537747--91538001 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
91537737 ACGCGGGTAC
* * * * *
91537747 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
91537796 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
91537849 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
91537904 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
91537957 CCTTACCGATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACC-AATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
91538002 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 8 0.05
55 73 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:91537938 original size:108 final size:110
Alignment explanation
Indices: 91537794--91537994 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
91537784 ATCCTTTTGA
* *
91537794 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACC-A
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCGA
91537856 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
91537902 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCGAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCGAA
91537967 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
91537995 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 5 0.06
110 29 0.35
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCGAA
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:91539883 original size:48 final size:48
Alignment explanation
Indices: 91539812--91540087 Score: 232
Period size: 48 Copynumber: 5.8 Consensus size: 48
91539802 GGGTAAGATA
* * * *
91539812 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATT
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
* * * * *** *
91539860 CTGATGCAATGTTCCAAACATGGTCTTACATTTGCTCACATATTGAGG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
** * * *
91539908 CTTTTGCCATG-TCTTAGACATGGTCTTACACTAGCTCTCATAACAATA
1 CTGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCTCATAACAATG
* * * * * * *** *
91539956 CTAATGTCATGTTCCAAACATGGT-TTGCATTGGCTCACATATTGAGG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
* * *
91540003 CCGATGCCATGTCCCAAACATGGTCATACACTAGCTCTCATAACAATG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
* * *
91540051 CCGATGCCATGTTCGAAACATGGTCTTACACTGGCTC
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTC
91540088 ACATGTACCT
Statistics
Matches: 169, Mismatches: 56, Indels: 6
0.73 0.24 0.03
Matches are distributed among these distances:
47 36 0.21
48 131 0.78
49 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (48 bp):
CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
Found at i:91540042 original size:95 final size:95
Alignment explanation
Indices: 91539814--91540091 Score: 378
Period size: 95 Copynumber: 2.9 Consensus size: 95
91539804 GTAAGATACT
* *
91539814 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATTCTGATGCAATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACTGATGC-ATGTTCCAAAC
* *
91539879 ATGGTCTTACATTTGCTCACATATTGAGGCT
65 ATGGTCTTACATTGGCTCACATATTGAGGCC
** ** *
91539910 TTTGCCATGTCTTAGACATGGTCTTACACTAGCTCTCATAACAATACTAATGTCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACTGATG-CATGTTCCAAAC
*
91539975 ATGGT-TTGCATTGGCTCACATATTGAGGCC
65 ATGGTCTTACATTGGCTCACATATTGAGGCC
* * * * *
91540005 GATGCCATGTCCCAAACATGGTCATACACTAGCTCTCATAACAATGCCGATGCCATGTTCGAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACTGATG-CATGTTCCAAAC
*
91540070 ATGGTCTTACACTGGCTCACAT
65 ATGGTCTTACATTGGCTCACAT
91540092 GTACCTTAAC
Statistics
Matches: 157, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
95 81 0.52
96 75 0.48
97 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACTGATGCATGTTCCAAACA
TGGTCTTACATTGGCTCACATATTGAGGCC
Found at i:91554742 original size:25 final size:25
Alignment explanation
Indices: 91554686--91554781 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
91554676 AGCTGGAAAT
*
91554686 GGTAAGCTCCTCCGAGATGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
*** *
91554711 CAAAAGCTCCTCTGAGCTGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* * *
91554736 GGTAAGCTACTCCGAGCTGAGTATC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* * *
91554761 AGTAAGCTCATACGAGCTGAA
1 GGTAAGCTCCTCCGAGCTGAA
91554782 ATTGGTAACC
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAC
Found at i:91554934 original size:13 final size:13
Alignment explanation
Indices: 91554916--91554975 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
91554906 TCAAAGAATA
91554916 TAATTACACAATT
1 TAATTACACAATT
*
91554929 TAATTACACGAACT
1 TAATTACAC-AATT
* *
91554943 TACA--A-AGAATA
1 TA-ATTACACAATT
91554954 TAATTACACAATT
1 TAATTACACAATT
91554967 TAATTACAC
1 TAATTACAC
91554976 GAACTTACCT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 2 0.06
13 23 0.64
14 5 0.14
15 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.32
Consensus pattern (13 bp):
TAATTACACAATT
Found at i:91554958 original size:38 final size:38
Alignment explanation
Indices: 91554907--91554983 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
91554897 CTAATCCAAT
91554907 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
1 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
91554945 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
1 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
91554983 C
1 C
91554984 CTCGACGAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (38 bp):
CAAAGAATATAATTACACAATTTAATTACACGAACTTA
Found at i:91558384 original size:40 final size:40
Alignment explanation
Indices: 91558282--91558465 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
91558272 AAATTGAATG
* * * * *
91558282 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
91558322 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
91558362 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
91558402 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
91558442 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
91558466 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:91560336 original size:45 final size:45
Alignment explanation
Indices: 91560264--91560481 Score: 268
Period size: 45 Copynumber: 5.0 Consensus size: 45
91560254 TATTGTACAC
*
91560264 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
91560309 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
91560354 TACTATTCGAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
91560399 CACTAATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * * *
91560441 TGA--ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
91560482 TTTGATAAAA
Statistics
Matches: 151, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 6 0.04
42 24 0.16
43 12 0.08
44 14 0.09
45 95 0.63
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:91561819 original size:85 final size:86
Alignment explanation
Indices: 91561681--91561846 Score: 325
Period size: 85 Copynumber: 1.9 Consensus size: 86
91561671 ACCGAGGCAT
91561681 AAAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTG
1 AAAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTG
91561746 ATGATTTGATTTAGTGCATAA
66 ATGATTTGATTTAGTGCATAA
91561767 AAAAAAATAATTT-AAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTG
1 AAAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTG
91561831 ATGATTTGATTTAGTG
66 ATGATTTGATTTAGTG
91561847 TTATAAATGT
Statistics
Matches: 80, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 67 0.84
86 13 0.16
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (86 bp):
AAAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTG
ATGATTTGATTTAGTGCATAA
Found at i:91569549 original size:40 final size:40
Alignment explanation
Indices: 91569447--91569630 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
91569437 AAATTGAATG
* * * * *
91569447 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
91569487 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
91569527 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
91569567 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
91569607 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
91569631 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:91571497 original size:45 final size:45
Alignment explanation
Indices: 91571425--91571642 Score: 268
Period size: 45 Copynumber: 5.0 Consensus size: 45
91571415 TATTGTACAC
*
91571425 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
91571470 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
91571515 TACTATTCGAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
91571560 CACTAATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * * *
91571602 TGA--ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
91571643 TTTGATAAAA
Statistics
Matches: 151, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 6 0.04
42 24 0.16
43 12 0.08
44 14 0.09
45 95 0.63
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:91573050 original size:86 final size:86
Alignment explanation
Indices: 91572907--91573072 Score: 332
Period size: 86 Copynumber: 1.9 Consensus size: 86
91572897 ACCGAGGCAT
91572907 AAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTGA
1 AAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTGA
91572972 TGATTTGATTTAGTGCATAAA
66 TGATTTGATTTAGTGCATAAA
91572993 AAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTGA
1 AAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTGA
91573058 TGATTTGATTTAGTG
66 TGATTTGATTTAGTG
91573073 TTATAAATGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (86 bp):
AAAAAATAATTTAAAATTTATTTTGATGCCTATGATATGTGTTAAATTGTGTGTGACATTTTTGA
TGATTTGATTTAGTGCATAAA
Found at i:91574626 original size:40 final size:39
Alignment explanation
Indices: 91574466--91574628 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
91574456 TGTGTATGAA
*
91574466 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
91574505 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91574544 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91574583 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
91574623 TGTGCG
1 TGTGCG
91574629 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91574644 original size:40 final size:39
Alignment explanation
Indices: 91574466--91574659 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
91574456 TGTGTATGAA
* *
91574466 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
91574505 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
91574544 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
91574583 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
91574623 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
91574660 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:91574793 original size:17 final size:17
Alignment explanation
Indices: 91574771--91574805 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
91574761 AACAACAAGG
91574771 TATGTGTTGTGTGTGCT
1 TATGTGTTGTGTGTGCT
91574788 TATGTGTTGTGTGTGCT
1 TATGTGTTGTGTGTGCT
91574805 T
1 T
91574806 TGCACACTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.06, G:0.34, T:0.54
Consensus pattern (17 bp):
TATGTGTTGTGTGTGCT
Found at i:91580991 original size:45 final size:45
Alignment explanation
Indices: 91580914--91581089 Score: 221
Period size: 45 Copynumber: 4.0 Consensus size: 45
91580904 TATTGTACAC
* * *
91580914 TACTATTTGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
91580959 TATTATTCGGGCGTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
91581004 TACTATTCAAGCCTTTGAGCTTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
91581049 CACTAATCGAGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
91581090 ATGAATTTGG
Statistics
Matches: 114, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
43 12 0.11
44 12 0.11
45 90 0.79
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:91589123 original size:2 final size:2
Alignment explanation
Indices: 91589116--91589146 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91589106 ACAAACCTGC
91589116 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91589147 AGCTTACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91596628 original size:30 final size:30
Alignment explanation
Indices: 91596594--91596662 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
91596584 CCGTGTGCTA
**
91596594 GGCCGTGTCCCTCACATGGTTGAGACACAC
1 GGCCGTGTCCCTCACACAGTTGAGACACAC
*
91596624 GGCCGTGTCCCTTACACAGTTGAGACACAC
1 GGCCGTGTCCCTCACACAGTTGAGACACAC
* *
91596654 AGCCATGTC
1 GGCCGTGTC
91596663 TCTACCCGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.22, C:0.33, G:0.25, T:0.20
Consensus pattern (30 bp):
GGCCGTGTCCCTCACACAGTTGAGACACAC
Found at i:91597641 original size:46 final size:45
Alignment explanation
Indices: 91597591--91597758 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
91597581 TCTCATAGTT
* *
91597591 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCAAGGCC
* * * * *
91597637 GATGCATGTCCCAGACATGTCTTATACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCAAGGCC
* * *
91597683 GATGAGATGTCCCAGACATGGTCTTACACTGGC-TCTTAT-AATGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCAA-G--GCC
* *
91597731 AATGCATGTCCCAAACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
91597759 AGCTCACAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
45 2 0.02
46 55 0.55
47 26 0.26
48 17 0.17
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCAAGGCC
Found at i:91600213 original size:21 final size:21
Alignment explanation
Indices: 91600187--91600233 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
91600177 ATCGATGGCA
*
91600187 AGTTCGGATGATGGTAATTCT
1 AGTTCGAATGATGGTAATTCT
91600208 AGTTCGAATGATGGTAATTCT
1 AGTTCGAATGATGGTAATTCT
91600229 AGTTC
1 AGTTC
91600234 AGGCTAGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.38
Consensus pattern (21 bp):
AGTTCGAATGATGGTAATTCT
Found at i:91603294 original size:40 final size:39
Alignment explanation
Indices: 91603249--91603456 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 39
91603239 CGGAATACAA
*
91603249 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
91603289 CCGGATAGAAGGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
91603329 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
91603369 CCGGATGTAGTCACTAGCAC-AATGGCCCTCGGGTCTTCA-C
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTT-AGC
** * * *
91603409 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
91603449 CCGGATAT
1 CCGGATAT
91603457 CATTCAATTG
Statistics
Matches: 137, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 5 0.04
40 128 0.93
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:91603401 original size:80 final size:80
Alignment explanation
Indices: 91603249--91603418 Score: 211
Period size: 80 Copynumber: 2.1 Consensus size: 80
91603239 CGGAATACAA
* * * *
91603249 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAAGCACTAGCACAAATG
*
91603314 CCTTCGGGTATTAGC
66 CCCTCGGGTATTAGC
* * *
91603329 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGCCCGGAT-GTAGTCACTAGCAC-AAT
1 CCGGATATAACAACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAAG-CACTAGCACAAAT
*
91603392 GGCCCTCGGGTCTTCA-C
65 -GCCCTCGGGTATT-AGC
91603409 CCGGATATAA
1 CCGGATATAA
91603419 TTACTAGCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 6 0.08
80 70 0.91
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAAGCACTAGCACAAATG
CCCTCGGGTATTAGC
Found at i:91605942 original size:45 final size:44
Alignment explanation
Indices: 91605790--91605988 Score: 161
Period size: 45 Copynumber: 4.5 Consensus size: 44
91605780 AGAAACAAGA
* * * * * **
91605790 AAGACCAT-GATTGAAAGATATGATGGCATTTTACCCAAAATGAGG
1 AAGACCATAG-TTGAAAGATATTAAGGCA-TTAAACCAGAATGAAT
* * *
91605835 AAGACCATAGTTGAAAGATAATAAGGCATTAAATCGGAATGAAT
1 AAGACCATAGTTGAAAGATATTAAGGCATTAAACCAGAATGAAT
* * * * *
91605879 AAGACCACAATTGAAAGATATTATGGCATTAAACCATATATGTAT
1 AAGACCATAGTTGAAAGATATTAAGGCATTAAACCAGA-ATGAAT
* *
91605924 AGGACCATAGTTGAAAGATATTAGGGCATTAAATCC--AATGCAAAT
1 AAGACCATAGTTGAAAGATATTAAGGCATTAAA-CCAGAATG--AAT
*
91605969 AAGATCATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATA
91605989 CTAGGCACTA
Statistics
Matches: 124, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
43 3 0.02
44 41 0.33
45 77 0.62
46 3 0.02
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (44 bp):
AAGACCATAGTTGAAAGATATTAAGGCATTAAACCAGAATGAAT
Found at i:91614660 original size:26 final size:26
Alignment explanation
Indices: 91614614--91614664 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
91614604 TAGCCATTCA
* *
91614614 AACATGCATTAATATATTATCAAAAT
1 AACATGCATCAATATAGTATCAAAAT
91614640 AACATGCATCAATA-AGGTATCAAAA
1 AACATGCATCAATATA-GTATCAAAA
91614665 GTACCAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (26 bp):
AACATGCATCAATATAGTATCAAAAT
Found at i:91618448 original size:50 final size:50
Alignment explanation
Indices: 91618331--91618772 Score: 422
Period size: 50 Copynumber: 8.8 Consensus size: 50
91618321 TGTGAGAACG
* * *** *
91618331 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTTAGGTCA
** * *
91618383 TGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * * *
91618433 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGTTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCA
* * *
91618484 CATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * * *
91618534 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGAT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
** * * * *
91618583 CATGTGTAGTACTAAGTGCAGGCTACTATTTGTACCCG-TTAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCA
* * * * * *
91618634 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGATAAGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * * *
91618684 CATATGCAGTATTAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * *
91618734 CATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
91618773 GAGCTTCGGT
Statistics
Matches: 313, Mismatches: 70, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
48 2 0.01
49 38 0.12
50 164 0.52
51 76 0.24
52 33 0.11
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
Found at i:91618640 original size:150 final size:151
Alignment explanation
Indices: 91618331--91618769 Score: 610
Period size: 150 Copynumber: 2.9 Consensus size: 151
91618321 TGTGAGAACG
* * * * *
91618331 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCATGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACT
* *
91618396 AAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
64 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
* **
91618461 TGCGTACTCGATAGTTTCGATCA
129 TGCGTACCCGATAACTTCGATCA
*
91618484 CATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
* * *
91618549 GTGCAGGCTACTACATGTACCGGATTGAT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATT
66 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
* *
91618613 TGTACCCGTTAACTTCGATCA
131 CGTACCCGATAACTTCGATCA
* * * * * * * *
91618634 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGATAAGTCACATATGCAGTATTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
* * *
91618699 GTGCAGGCTACTACGTGTACTAGATTGATAGGTCACATGTGTAATACTAAGTGCAGGCTACTATG
66 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
91618764 CGTACC
131 CGTACC
91618770 AGAGAGCTTC
Statistics
Matches: 253, Mismatches: 32, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
150 132 0.52
151 84 0.33
153 37 0.15
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (151 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
CGTACCCGATAACTTCGATCA
Found at i:91619567 original size:180 final size:180
Alignment explanation
Indices: 91619314--91619649 Score: 478
Period size: 180 Copynumber: 1.9 Consensus size: 180
91619304 CAAGATCTGT
* * * * * **
91619314 ACCATGAGATAAATAATTTTTCGTGAAGAAAGGTTGGAACTATCAGATAGTGAAATAGGGATATC
1 ACCATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAATGAAACAGGGATAAA
*
91619379 TTTAATGAATAAAATATACTAATTGGCTAAACAAAAAATTCGT-AAAACTTTATGGTAATAATAT
66 TTTAATGAATAAAATATACTAATTGGCTAAACAAAAAATTC-TAAAAACTTTATGGTAAGAATAT
91619443 ATATGAGTCTAGTTTCTGATAAAATTAGTTGTTCTTAATTTGGAGTCCCGC
130 ATATGAGTCTAGTTTCTGATAAAATTAGTTGTTCTTAATTTGGAGTCCCGC
* * **
91619494 ACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTTGGACAATGAAACAGTGG-TAA
1 ACCATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAATGAAACAG-GGATAA
* * * *
91619558 ATTTAATGAATAAATTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATAT
65 ATTTAATGAATAAAATATACTAATTGGCTAAACAAAAAATTCTAAAAACTTTATGGTAAGAATAT
* *
91619623 ATGTGAGTCTAGTTTCTGGTAAAATTA
130 ATATGAGTCTAGTTTCTGATAAAATTA
91619650 ACAGATCTTA
Statistics
Matches: 136, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
179 1 0.01
180 133 0.98
181 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (180 bp):
ACCATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAATGAAACAGGGATAAA
TTTAATGAATAAAATATACTAATTGGCTAAACAAAAAATTCTAAAAACTTTATGGTAAGAATATA
TATGAGTCTAGTTTCTGATAAAATTAGTTGTTCTTAATTTGGAGTCCCGC
Found at i:91623384 original size:24 final size:24
Alignment explanation
Indices: 91623356--91623402 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
91623346 AGTATATACC
* *
91623356 AATTCAATCA-ATATAAATTCAATA
1 AATTC-ATCACATACAAAATCAATA
91623380 AATTCATCACATACAAAATCAAT
1 AATTCATCACATACAAAATCAAT
91623403 CCATTTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (24 bp):
AATTCATCACATACAAAATCAATA
Found at i:91630200 original size:19 final size:19
Alignment explanation
Indices: 91630153--91630193 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
91630143 TTTATTAAAT
*
91630153 ATTATAAAATATCATAGAAA
1 ATTATAAAA-GTCATAGAAA
*
91630173 ATTATAAAAGTCATGGAAA
1 ATTATAAAAGTCATAGAAA
91630192 AT
1 AT
91630194 GTTAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.29
Consensus pattern (19 bp):
ATTATAAAAGTCATAGAAA
Found at i:91630404 original size:16 final size:16
Alignment explanation
Indices: 91630380--91630431 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
91630370 TGGTTCACTA
* *
91630380 TAATGGAATAGGGCTG
1 TAATTGAATAGAGCTG
91630396 TAATTGAATAGAGCTG
1 TAATTGAATAGAGCTG
*
91630412 TAATTGAATAGAGTTG
1 TAATTGAATAGAGCTG
91630428 TAAT
1 TAAT
91630432 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.33
Consensus pattern (16 bp):
TAATTGAATAGAGCTG
Found at i:91630501 original size:44 final size:46
Alignment explanation
Indices: 91630417--91630505 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 46
91630407 AGCTGTAATT
*
91630417 GAATAGAGTTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
***
91630463 GAATAGAGCTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAAT
91630506 AGATGTTGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 22 0.56
45 3 0.08
46 14 0.36
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (46 bp):
GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:91630614 original size:25 final size:26
Alignment explanation
Indices: 91630586--91630636 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
91630576 ATAATTATTG
*
91630586 TTATTGTT-ATTAAATTTTAATAAAA
1 TTATTGTTAAATAAATTTTAATAAAA
*
91630611 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTTAAATAAATTTTAATAAAA
91630637 ATAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (26 bp):
TTATTGTTAAATAAATTTTAATAAAA
Found at i:91630769 original size:23 final size:21
Alignment explanation
Indices: 91630743--91630785 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
91630733 TATTATATGA
91630743 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
91630766 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
91630786 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:91637701 original size:13 final size:13
Alignment explanation
Indices: 91637683--91637709 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91637673 GTAAAATTTG
91637683 TAACAAATTTCAC
1 TAACAAATTTCAC
91637696 TAACAAATTTCAC
1 TAACAAATTTCAC
91637709 T
1 T
91637710 CTAGAGAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
TAACAAATTTCAC
Found at i:91645124 original size:9 final size:9
Alignment explanation
Indices: 91645110--91645202 Score: 84
Period size: 9 Copynumber: 10.2 Consensus size: 9
91645100 TAATGACTTT
91645110 TTTTTATAA
1 TTTTTATAA
*
91645119 TTTTTATTA
1 TTTTTATAA
91645128 -TTTTATCAA
1 TTTTTAT-AA
*
91645137 TTTTCATAA
1 TTTTTATAA
*
91645146 TTTTTATTA
1 TTTTTATAA
*
91645155 -TTTTA-AT
1 TTTTTATAA
91645162 TTTTTATAAA
1 TTTTTAT-AA
91645172 TTTTATATAA
1 TTTT-TATAA
*
91645182 TTTTTATGA
1 TTTTTATAA
91645191 TTTTTAATAA
1 TTTTT-ATAA
91645201 TT
1 TT
91645203 CTTAATATTT
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
8 16 0.24
9 27 0.40
10 21 0.31
11 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:91645158 original size:36 final size:36
Alignment explanation
Indices: 91645110--91645196 Score: 113
Period size: 36 Copynumber: 2.4 Consensus size: 36
91645100 TAATGACTTT
*
91645110 TTTTTATAATTTTTATTATTTTATCAATTTT-CATAA
1 TTTTTATAATTTTTATT-TTTTATAAATTTTACATAA
* * *
91645146 TTTTTATTATTTTAATTTTTTATAAATTTTATATAA
1 TTTTTATAATTTTTATTTTTTATAAATTTTACATAA
*
91645182 TTTTTATGATTTTTA
1 TTTTTATAATTTTTA
91645197 ATAATTCTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
35 12 0.27
36 32 0.73
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (36 bp):
TTTTTATAATTTTTATTTTTTATAAATTTTACATAA
Found at i:91645184 original size:27 final size:26
Alignment explanation
Indices: 91645109--91645213 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 26
91645099 TTAATGACTT
91645109 TTTTTTATAATTTTTATTATTTTATCA
1 TTTTTTATAATTTTTATTATTTTA-CA
* *
91645136 ATTTTCATAATTTTTATTATTTTA-A
1 TTTTTTATAATTTTTATTATTTTACA
* *
91645161 TTTTTTATAAATTTTATATAATTTTTATGA
1 TTTTTTAT-AATTTT-TATTA-TTTTA-CA
* * *
91645191 TTTTTAATAATTCTTAATATTTT
1 TTTTTTATAATTTTTATTATTTT
91645214 TTGCTACATT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
25 7 0.11
26 6 0.09
27 30 0.47
28 8 0.12
29 5 0.08
30 8 0.12
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (26 bp):
TTTTTTATAATTTTTATTATTTTACA
Found at i:91645212 original size:19 final size:20
Alignment explanation
Indices: 91645172--91645214 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
91645162 TTTTTATAAA
*
91645172 TTTTATATAATTTTTATGAT
1 TTTTATATAATTTTAATGAT
91645192 TTTTA-ATAATTCTTAAT-AT
1 TTTTATATAATT-TTAATGAT
91645211 TTTT
1 TTTT
91645215 TGCTACATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATATAATTTTAATGAT
Found at i:91646124 original size:6 final size:6
Alignment explanation
Indices: 91646113--91646143 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
91646103 GAAAACTCTA
91646113 AAAATT AAAATT AAAATT AAAATT AAAATT A
1 AAAATT AAAATT AAAATT AAAATT AAAATT A
91646144 GACTAAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:91646152 original size:18 final size:18
Alignment explanation
Indices: 91646110--91646152 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
91646100 TTAGAAAACT
91646110 CTAAAAATTAAAATTAAA
1 CTAAAAATTAAAATTAAA
* * *
91646128 ATTAAAATTAAAATTAGA
1 CTAAAAATTAAAATTAAA
91646146 CTAAAAA
1 CTAAAAA
91646153 GAAAAGAAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (18 bp):
CTAAAAATTAAAATTAAA
Found at i:91652578 original size:18 final size:18
Alignment explanation
Indices: 91652555--91652589 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91652545 TAGTCTTTTA
*
91652555 GATGCACTTGTTGAGTGT
1 GATGCACTGGTTGAGTGT
91652573 GATGCACTGGTTGAGTG
1 GATGCACTGGTTGAGTG
91652590 CTAATCACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.11, G:0.37, T:0.34
Consensus pattern (18 bp):
GATGCACTGGTTGAGTGT
Found at i:91654966 original size:21 final size:21
Alignment explanation
Indices: 91654937--91654977 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91654927 TGCTGGACAG
*
91654937 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
91654958 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
91654978 GGCTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:91659413 original size:37 final size:37
Alignment explanation
Indices: 91659363--91659437 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
91659353 TTGGGCAATC
*
91659363 TACTTGACCATCATGGATGTGCTATATGATCTGAAAA
1 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
91659400 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
1 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
91659437 T
1 T
91659438 CAAGTATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (37 bp):
TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
Found at i:91665415 original size:32 final size:32
Alignment explanation
Indices: 91665372--91665448 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
91665362 TCAATCATTT
*
91665372 AATATCCAACAAGCTT-AAAACATAATAAATTC
1 AATATCCAACAA-ATTCAAAACATAATAAATTC
* * *
91665404 AATATCTAACAAATTCAAGACATAATAATTTC
1 AATATCCAACAAATTCAAAACATAATAAATTC
*
91665436 AAAATCCAACAAA
1 AATATCCAACAAA
91665449 CTAAAATTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 2 0.05
32 36 0.95
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.25
Consensus pattern (32 bp):
AATATCCAACAAATTCAAAACATAATAAATTC
Found at i:91680090 original size:49 final size:48
Alignment explanation
Indices: 91679990--91680239 Score: 228
Period size: 49 Copynumber: 5.2 Consensus size: 48
91679980 GTTCCAAACA
*
91679990 AGGTCTTACACTGGCTCTCAC-ATCTAAGTCGATGCCATGTCCCAGAC
1 AGGTCTTACACTGGCTCTCACTATCTGAGTCGATGCCATGTCCCAGAC
* * *
91680037 AGGTCTTACACTGGTTCTCACTTATCTGTGTCGATGCCATGTCCCAGAT
1 AGGTCTTACACTGGCTCTCAC-TATCTGAGTCGATGCCATGTCCCAGAC
* * * * *
91680086 AGGTCTTACACT-G-ACACAC-CTC-AAG-CTGATGCCATGTCCCAGGC
1 AGGTCTTACACTGGCTCTCACTATCTGAGTC-GATGCCATGTCCCAGAC
** * * **
91680130 AGGTCTTACACTAACT-TGCA-TATCTTGAGGCCGATGCCGTGTCCCAGGT
1 AGGTCTTACACTGGCTCT-CACTATC-TGA-GTCGATGCCATGTCCCAGAC
* * *
91680179 AGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCCTAGAC
1 AGGTCTTACACTGGCTCTCA-CTATCTGAGTCGATGCCATGTCCCAGAC
91680228 AGGTCTTACACT
1 AGGTCTTACACT
91680240 AGCATACACA
Statistics
Matches: 162, Mismatches: 27, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 28 0.17
45 2 0.01
46 4 0.02
47 24 0.15
48 2 0.01
49 94 0.58
50 3 0.02
51 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
AGGTCTTACACTGGCTCTCACTATCTGAGTCGATGCCATGTCCCAGAC
Found at i:91693758 original size:29 final size:29
Alignment explanation
Indices: 91693726--91693828 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
91693716 GTGACGAGAT
* *
91693726 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
91693755 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
91693784 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
91693813 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91693829 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:91701741 original size:29 final size:29
Alignment explanation
Indices: 91701709--91701811 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
91701699 GTGACGAGAT
* *
91701709 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
91701738 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
91701767 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
91701796 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91701812 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:91712094 original size:43 final size:42
Alignment explanation
Indices: 91712039--91712196 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 42
91712029 ATATCGTACA
*
91712039 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATG-AATCACATATCG
* *
91712082 ATGCCACTGTCCCAGACAG-GGCCTTACATGAATCTA-ATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGAATC-ACATATCG
* * *
91712123 ATGTCAATGTCCCAAACATGGTCTTACACAT-AATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTT--ACATGAATCACATATCG
*
91712166 ATGCCAATGTCCCAGATGTGGTCTTACATGA
1 ATGCCAATGTCCCAGACGTGGTCTTACATGA
91712197 GAAAAAATAT
Statistics
Matches: 95, Mismatches: 12, Indels: 17
0.77 0.10 0.14
Matches are distributed among these distances:
41 26 0.27
42 15 0.16
43 53 0.56
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAATCACATATCG
Found at i:91718408 original size:31 final size:32
Alignment explanation
Indices: 91718344--91718416 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
91718334 GGCCAGGTCG
91718344 TGTGGG-CCACACGGGCAAGACCAATCTGGGCA
1 TGTGGGCCCACACGGGCAAGACCAA-CTGGGCA
*
91718376 TGTGGGCCCACACGGGCAAG--CTACATGGGCA
1 TGTGGGCCCACACGGGCAAGACCAAC-TGGGCA
*
91718407 TGTAGGCCCA
1 TGTGGGCCCA
91718417 TAACTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 1 0.03
31 17 0.46
32 6 0.16
33 13 0.35
ACGTcount: A:0.23, C:0.29, G:0.34, T:0.14
Consensus pattern (32 bp):
TGTGGGCCCACACGGGCAAGACCAACTGGGCA
Found at i:91719167 original size:16 final size:18
Alignment explanation
Indices: 91719146--91719187 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
91719136 ATGCATGATG
91719146 GAAAACACA-G-TTTTAT
1 GAAAACACAGGTTTTTAT
* *
91719162 GAAAACAAAGGTTTTTCT
1 GAAAACACAGGTTTTTAT
91719180 GAAAACAC
1 GAAAACAC
91719188 GAATTGAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 8 0.38
17 1 0.05
18 12 0.57
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.26
Consensus pattern (18 bp):
GAAAACACAGGTTTTTAT
Found at i:91740557 original size:47 final size:47
Alignment explanation
Indices: 91740497--91740626 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 47
91740487 GTGCAAATAA
* * * * *
91740497 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCAAAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCAAAGAGAAAT
* *** *
91740544 TACCTTGATTTGGCTACGGGCTATAGTATAGGTACTCCGGGATAAAT
1 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCAAAGAGAAAT
* *
91740591 TACCTTGATTTGGCTACGGGCCATAATATAGATACT
1 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACT
91740627 TATCGATTGA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCAAAGAGAAAT
Found at i:91743933 original size:24 final size:24
Alignment explanation
Indices: 91743892--91743938 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
91743882 CTGTCAGGAG
* **
91743892 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAAGAGCAGATAAGGGAT
91743916 AGGATTTAAGAGCAGATAAGGGA
1 AGGATTTAAGAGCAGATAAGGGA
91743939 GGAAATCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGATTTAAGAGCAGATAAGGGAT
Found at i:91745414 original size:27 final size:26
Alignment explanation
Indices: 91745347--91745457 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
91745337 AGGAAGCGTC
* *
91745347 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
91745374 CT-GTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
91745400 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
91745428 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
91745454 CTGG
1 CTGG
91745458 CACCATGCTG
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.03
26 25 0.34
27 30 0.41
28 17 0.23
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:91746532 original size:11 final size:10
Alignment explanation
Indices: 91746504--91746537 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
91746494 AGCCTGTAAG
91746504 TATTCTGAAT
1 TATTCTGAAT
*
91746514 TTTTCTGAAT
1 TATTCTGAAT
91746524 ATATTCTGAAT
1 -TATTCTGAAT
91746535 TAT
1 TAT
91746538 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:91751721 original size:24 final size:24
Alignment explanation
Indices: 91751689--91751735 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
91751679 CTGTCAGGAG
**
91751689 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
91751713 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
91751736 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:91753256 original size:27 final size:26
Alignment explanation
Indices: 91753151--91753261 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
91753141 AGGAAACGTC
* **
91753151 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
91753178 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
91753205 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
91753233 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
91753259 CTG
1 CTG
91753262 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:91753257 original size:54 final size:54
Alignment explanation
Indices: 91753151--91753261 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
91753141 AGGAAACGTC
* *
91753151 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
* * * *
91753205 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-AATCTGGTGACTCTGCCACATATATCTGTT
91753259 CTG
1 CTG
91753262 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
Found at i:91754307 original size:56 final size:54
Alignment explanation
Indices: 91754188--91754342 Score: 168
Period size: 56 Copynumber: 2.8 Consensus size: 54
91754178 CATGACATAG
* * *
91754188 CACGCCTCTCGACAGGGCTACATATGAGCACCCAGACCTAGCATGCATCACATTAC
1 CACGCCTCTCAACAGGGCTACATA--AGCTCCCAGACCTAGCATGCACCACATTAC
* * *
91754244 CACGCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCGTGTACCACATAATTA-
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGCACCAC---ATTAC
* * * *
91754300 CATGCCTCTCAACGGGGCTACACAAGCTCCCAGACCTGGCATG
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATG
91754343 TATCATGTCA
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 20 0.24
56 60 0.71
57 4 0.05
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.18
Consensus pattern (54 bp):
CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGCACCACATTAC
Found at i:91757811 original size:26 final size:26
Alignment explanation
Indices: 91757782--91757854 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
91757772 CCCATTATAT
*
91757782 GGCTCTTCGTGAGCTTCTCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * * * *
91757808 GGCTATTTGTAAGCTTCCCAATTAAC
1 GGCTCTTCGTGAGCTTCCCGATTAAA
*
91757834 GGCTCTCCG-GAGCTTCCCGAT
1 GGCTCTTCGTGAGCTTCCCGAT
91757855 ATGGCCCGCT
Statistics
Matches: 36, Mismatches: 11, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
25 10 0.28
26 26 0.72
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:91757955 original size:24 final size:22
Alignment explanation
Indices: 91757928--91757974 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
91757918 TACCCGTTAT
91757928 TGGCTCGTATGAGCTTCTCGATTA
1 TGGC-CGTATGAGCTT-TCGATTA
* *
91757952 TGGCCTTATGAGCTTTCTATTA
1 TGGCCGTATGAGCTTTCGATTA
91757974 T
1 T
91757975 ATAGCCCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (22 bp):
TGGCCGTATGAGCTTTCGATTA
Found at i:91763080 original size:18 final size:18
Alignment explanation
Indices: 91763057--91763097 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
91763047 TCTCCTCTCC
* *
91763057 TCTTCAACTTTTTCTTTT
1 TCTTCAAATTTTTATTTT
91763075 TCTTCAAATTTTTATTTT
1 TCTTCAAATTTTTATTTT
91763093 TCTTC
1 TCTTC
91763098 TTTTCCTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (18 bp):
TCTTCAAATTTTTATTTT
Found at i:91764641 original size:32 final size:30
Alignment explanation
Indices: 91764556--91764649 Score: 71
Period size: 32 Copynumber: 2.9 Consensus size: 30
91764546 TATGGGCCAT
* *
91764556 ACTGTTATCTGAATAAAGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCT-TGGCCCAGTTC
* * *
91764590 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCT-TGGCCCAGT-TC
91764623 ACTGTTATCTGAATGGGCTTCGGCCCA
1 ACTGTTATCTGAATGGGCTT-GGCCCA
91764650 ATGGGCTTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
31 1 0.02
32 26 0.54
33 10 0.21
34 9 0.19
35 2 0.04
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (30 bp):
ACTGTTATCTGAATGGGCTTGGCCCAGTTC
Found at i:91766327 original size:21 final size:21
Alignment explanation
Indices: 91766293--91766340 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
91766283 GTCACACGCT
* * **
91766293 CGTGTAAATGTGGGACATGCC
1 CGTGTGAATATGGGACACACC
91766314 CGTGTGAATATGGGACACACC
1 CGTGTGAATATGGGACACACC
91766335 CGTGTG
1 CGTGTG
91766341 GGTAGACCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (21 bp):
CGTGTGAATATGGGACACACC
Found at i:91774589 original size:17 final size:17
Alignment explanation
Indices: 91774551--91774589 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
91774541 GTTTTGTTTA
*
91774551 TTTTTCTTTATTTATTT
1 TTTTTCATTATTTATTT
* *
91774568 CTTTTCATTATTTCTTT
1 TTTTTCATTATTTATTT
91774585 TTTTT
1 TTTTT
91774590 TATCTCTTAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCATTATTTATTT
Found at i:91774592 original size:14 final size:14
Alignment explanation
Indices: 91774542--91774597 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
91774532 ATTTGTTTTG
*
91774542 TTTTGTTTATTT-T
1 TTTTATTTATTTCT
91774555 TCTTTATTTATTTCT
1 T-TTTATTTATTTCT
*
91774570 TTTCA-TTATTTCT
1 TTTTATTTATTTCT
* *
91774583 TTTTTTTTATCTCT
1 TTTTATTTATTTCT
91774597 T
1 T
91774598 AAACTTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
13 12 0.34
14 21 0.60
15 2 0.06
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTTATTTATTTCT
Found at i:91777528 original size:48 final size:48
Alignment explanation
Indices: 91777424--91777833 Score: 282
Period size: 46 Copynumber: 8.7 Consensus size: 48
91777414 TTATTTGTGT
* *
91777424 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-C-ATTATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGA-GATGAGA
* * * * *
91777470 GCCAATGTAAGACCATGTCTGTGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGA
* * * *
91777518 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGAGATGTA-C
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG-AGA
* * *
91777564 GCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGC-TACGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATGAGA
* * *
91777609 TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-G-TATAGAGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAT-GA-GA
* * *
91777656 GTTAGTGTAAGACCATGTCTGGGACATAGCATCGGCA-CAGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-GAGA--TGAGA
* * * * * ** *
91777706 GCTAGTGTAAGACCATGTTTAGGACATGGCGTCAGCCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAT-GAGA
* **
91777755 G-TCAGTGGAAGACCATGTCTGGGACATGGCATC-G-A-CTTGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAT-GA-GA
*
91777802 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
91777834 TAGTATTATA
Statistics
Matches: 289, Mismatches: 51, Indels: 47
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.04
45 17 0.06
46 73 0.25
47 59 0.20
48 57 0.20
49 32 0.11
50 36 0.12
51 3 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGA
Found at i:91780574 original size:28 final size:27
Alignment explanation
Indices: 91780522--91780581 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
91780512 TCGATGTCTC
* * *
91780522 GCACACTAAGTGTCATACTCCATATCTT
1 GCACACCAAGTGCCATACTCAATAT-TT
*
91780550 GCACACCAAGTGCCATTCTCAATATTT
1 GCACACCAAGTGCCATACTCAATATTT
91780577 -CACAC
1 GCACAC
91780582 ACTAAATGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (27 bp):
GCACACCAAGTGCCATACTCAATATTT
Found at i:91780596 original size:2 final size:2
Alignment explanation
Indices: 91780591--91780630 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
91780581 CACTAAATGC
* *
91780591 CA CA CA CA CA CA CA CG CA TA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
91780631 TATATATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.47, G:0.03, T:0.03
Consensus pattern (2 bp):
CA
Found at i:91780605 original size:22 final size:22
Alignment explanation
Indices: 91780577--91780628 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
91780567 CTCAATATTT
*
91780577 CACACACTAAATGC-CACACACA
1 CACACAC-AAATACACACACACA
**
91780599 CACACACGCATACACACACACA
1 CACACACAAATACACACACACA
91780621 CACACACA
1 CACACACA
91780629 CATATATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.46, C:0.44, G:0.04, T:0.06
Consensus pattern (22 bp):
CACACACAAATACACACACACA
Found at i:91783295 original size:27 final size:26
Alignment explanation
Indices: 91783258--91783368 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
91783248 AGCATGGCTG
* *
91783258 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
91783284 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
91783312 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
91783339 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
91783366 CCA
1 CCA
91783369 AAACGCTTCC
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.06
27 55 0.71
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:91783317 original size:54 final size:54
Alignment explanation
Indices: 91783258--91783368 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
91783248 AGCATGGCTG
*
91783258 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
91783312 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
91783366 CCA
1 CCA
91783369 AAACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:91783509 original size:26 final size:27
Alignment explanation
Indices: 91783473--91783549 Score: 104
Period size: 30 Copynumber: 2.8 Consensus size: 27
91783463 CAAAATTAAC
*
91783473 CCTA-GGGTATAACGGTAATTT-TACA
1 CCTAGGGGTATAACAGTAATTTCTACA
91783498 CCTAGGGGTATAACAGTAATTTTCCATACA
1 CCTAGGGGTATAACAGTAA-TTT-C-TACA
91783528 CCTAGGGGTATAACAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
91783550 AGCTACTTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
25 4 0.09
26 13 0.28
27 3 0.07
29 3 0.07
30 23 0.50
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTCTACA
Found at i:91785019 original size:26 final size:26
Alignment explanation
Indices: 91784983--91785066 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
91784973 CATGAAATTT
91784983 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91785009 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91785035 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91785061 TTATCA
1 TTATCA
91785067 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91787118 original size:20 final size:21
Alignment explanation
Indices: 91787081--91787119 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91787071 CAAATTTTCT
**
91787081 GTAAAAATTATTATGCTAATA
1 GTAAAAATTAGGATGCTAATA
91787102 GTAAAAATTAGGA-GCTAA
1 GTAAAAATTAGGATGCTAA
91787120 ATTTATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (21 bp):
GTAAAAATTAGGATGCTAATA
Found at i:91787204 original size:2 final size:2
Alignment explanation
Indices: 91787192--91787243 Score: 95
Period size: 2 Copynumber: 25.5 Consensus size: 2
91787182 AGTGACCAAA
91787192 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91787235 AT AT AT AT A
1 AT AT AT AT A
91787244 AAAGAAATTG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 47 0.96
3 2 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91793579 original size:31 final size:31
Alignment explanation
Indices: 91793543--91793613 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
91793533 GAAAAGCTTG
*
91793543 AAGTTCAGGCCCCAATATGAAAATAATTA-CC
1 AAGTTCAGGCCCCAATATGAAAACAA-TAGCC
* *
91793574 AAGTTCATGCCCTAATATGAAAACAATAGCC
1 AAGTTCAGGCCCCAATATGAAAACAATAGCC
91793605 AAGTTCAGG
1 AAGTTCAGG
91793614 GATGAACTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 2 0.06
31 33 0.94
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (31 bp):
AAGTTCAGGCCCCAATATGAAAACAATAGCC
Found at i:91794241 original size:29 final size:27
Alignment explanation
Indices: 91794177--91794241 Score: 67
Period size: 31 Copynumber: 2.3 Consensus size: 27
91794167 ATTTAATGTG
*
91794177 TATAATTACACAAAATCAAAATTCAAA
1 TATAATTACAAAAAATCAAAATTCAAA
* *
91794204 TATTAAATTACAAATTAAATCAAAATTTATA
1 TA-T-AATTACAAA--AAATCAAAATTCAAA
91794235 TATAATT
1 TATAATT
91794242 TTTATATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.06
28 1 0.03
29 12 0.39
30 1 0.03
31 15 0.48
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.35
Consensus pattern (27 bp):
TATAATTACAAAAAATCAAAATTCAAA
Found at i:91803517 original size:50 final size:50
Alignment explanation
Indices: 91803351--91803792 Score: 316
Period size: 50 Copynumber: 8.8 Consensus size: 50
91803341 ATGGTTTTAG
* * * * *
91803351 ATCACGTGTGTAGTACTAAGTGCAGGTTTCTACGTGTACCAAATAGTTAG
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAC
* ** * * * * ** * * * *
91803401 GTTGCATGTGTAGTATTAAATGCAGGCTACTATGCATACCTGACAACTT-C
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TAGTTAC
* * * *
91803451 AATCACATGTGTAGTACTAAGTACAGGCTACTACATGTATCAGATGGTTAC
1 -ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAC
* * * * *
91803502 ATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGGCA-ACTT-C
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAG-ATAGTTAC
* * * *
91803552 AATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAG
1 -ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAC
* * * * *
91803603 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAG
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAC
* * * * * * * * * *
91803653 GTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGACAACTT-C
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TAGTTAC
* * * *
91803703 AATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAG
1 -ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAC
* * *
91803754 GTCACGTGTGTAGTACTAAGTGTAAGCTACTACGTGTAT
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAT
91803793 TGGATTGTTG
Statistics
Matches: 296, Mismatches: 85, Indels: 22
0.73 0.21 0.05
Matches are distributed among these distances:
49 1 0.00
50 184 0.62
51 110 0.37
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (50 bp):
ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAC
Found at i:91803613 original size:151 final size:151
Alignment explanation
Indices: 91803453--91803842 Score: 557
Period size: 151 Copynumber: 2.6 Consensus size: 151
91803443 ACAACTTCAA
* * * * ** * *
91803453 TCACATGTGTAGTACTAAGTACAGGCTACTACATGTATCAGATGGTTACATCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTGTAGTAC
*
91803518 TAAGTGCAGGCTACTATGCGTACCCGGCAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
66 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
* *
91803583 TACGTGTATCATATGGTTAGG
131 TACGTATATCAGATGGTTAGG
* * * *
91803604 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTGTAGTAC
* *
91803669 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCATGTGTGTAGTACTAAGTGCAGGCTAC
66 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
91803734 TACGTATATCAGATGGTTAGG
131 TACGTATATCAGATGGTTAGG
* * ** * *
91803755 TCACGTGTGTAGTACTAAGTGTAAGCTACTACGTGTATTGGATTGTT-GGTCGCATGTGTTGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTGTAGTAC
*
91803819 CAAGTGCAGGCTACTATGCGTACC
66 TAAGTGCAGGCTACTATGCGTACC
91803843 AGATAGCTTC
Statistics
Matches: 211, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
150 38 0.18
151 173 0.82
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
TACGTATATCAGATGGTTAGG
Found at i:91803642 original size:101 final size:101
Alignment explanation
Indices: 91803351--91803634 Score: 374
Period size: 101 Copynumber: 2.8 Consensus size: 101
91803341 ATGGTTTTAG
* * * *
91803351 ATCACGTGTGTAGTACTAAGTGCAGGTTTCTACGTGTACCAAATAGTTAGGT--TGCATGTGTAG
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCATG--TGTGTAG
* * * *
91803414 TATTAAATGCAGGCTACTATGCATACCTGACAACTTCA
64 TACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA
* * * * ** *
91803452 ATCACATGTGTAGTACTAAGTACAGGCTACTACATGTATCAGATGGTTACATCACGTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCATGTGTGTAGTA
*
91803517 CTAAGTGCAGGCTACTATGCGTACCCGGCAACTTCA
66 CTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA
* *
91803553 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGTCATGTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCATGTGTGTAGTA
91803618 CTAAGTGCAGGCTACTA
66 CTAAGTGCAGGCTACTA
91803635 CGTGTACCAA
Statistics
Matches: 157, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
101 156 0.99
103 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (101 bp):
ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCATGTGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA
Found at i:91803811 original size:101 final size:100
Alignment explanation
Indices: 91803347--91803834 Score: 316
Period size: 101 Copynumber: 4.9 Consensus size: 100
91803337 TAAGATGGTT
* * * * * * *
91803347 TTAGATCACGTGTGTAGTACTAAGTGCAGGTTTCTACGTGTACCAAATAGTTAGGTTGCA--TGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAGTT-GG-TCCATGTGT
* * * * * *
91803410 GTAGTATTAAATGCAGGCTACTATGCATACCTGACA-AC
64 GTAGTACTAAGTGCAGGCTACTACGTATACC--AAATAG
* * * * * * ** *
91803448 TTCA-ATCACATGTGTAGTACTAAGTACAGGCTACTACATGTATCAGATGGTTACAT-CACGTGT
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAGTT-GGTCCATGTGT
** *
91803511 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGGCAACT--
64 GTAGTACTAAGTGCAGGCTACTA--CGTATAC--CAAATAG
* * * *
91803550 TCA-ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGT-CATGTGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAGTT-GGTCCATGTGTG
*
91803613 TAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
65 TAGTACTAAGTGCAGGCTACTACGTATACCAAATAG
* * * * * * * * * * **
91803649 TTAGGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAAT-CATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGA-TAGTT-GGTCCATGTGT
* * *
91803713 GTAGTACTAAGTGCAGGCTACTACGTATATCAGATGG
64 GTAGTACTAAGTGCAGGCTACTACGTATACCAAATAG
* ** *
91803750 TTAGGTCACGTGTGTAGTACTAAGTGTAAGCTACTACGTGTATTGGATTGTTGGTCGCATGTGT-
1 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAGTTGGTC-CATGTGTG
*
91803814 T-GTACCAAGTGCAGGCTACTA
65 TAGTACTAAGTGCAGGCTACTA
91803835 TGCGTACCAG
Statistics
Matches: 305, Mismatches: 68, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
97 4 0.01
99 28 0.09
100 37 0.12
101 229 0.75
102 2 0.01
103 4 0.01
105 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (100 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAGTTGGTCCATGTGTGT
AGTACTAAGTGCAGGCTACTACGTATACCAAATAG
Done.