Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 298 of 410
Found at i:92129118 original size:28 final size:28
Alignment explanation
Indices: 92129087--92129157 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
92129077 GAGTCCATAG
92129087 ATATATTTAATTAAT-ATTTA-TGATTTAA
1 ATATATTTAATTAATGA-TTAGTGATTT-A
*
92129115 ATATAGTATAA-TAATGATTAGTGATTTA
1 ATATA-TTTAATTAATGATTAGTGATTTA
*
92129143 ATAGATTTAATTAAT
1 ATATATTTAATTAAT
92129158 TGGTAAGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
27 4 0.11
28 21 0.58
29 11 0.31
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (28 bp):
ATATATTTAATTAATGATTAGTGATTTA
Found at i:92130523 original size:15 final size:15
Alignment explanation
Indices: 92130499--92130528 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92130489 GACTAGATTA
92130499 AAAAAAATAAAATAT
1 AAAAAAATAAAATAT
*
92130514 AAAAATATAAAATAT
1 AAAAAAATAAAATAT
92130529 TATTTGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAAAATAAAATAT
Found at i:92134495 original size:5 final size:5
Alignment explanation
Indices: 92134485--92134510 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
92134475 ATTTTTTATA
92134485 TGTAT TGTAT TGTAT TGTAT TGTAT T
1 TGTAT TGTAT TGTAT TGTAT TGTAT T
92134511 AAATGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (5 bp):
TGTAT
Found at i:92138606 original size:21 final size:22
Alignment explanation
Indices: 92138566--92138606 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
92138556 TGGGCATTAC
*
92138566 CAAAGATCCCAAATACAAAAAT
1 CAAAGATCCCAAAGACAAAAAT
*
92138588 CAAA-ATCCCAAAGAGAAAA
1 CAAAGATCCCAAAGACAAAA
92138607 TTAGAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.61, C:0.22, G:0.07, T:0.10
Consensus pattern (22 bp):
CAAAGATCCCAAAGACAAAAAT
Found at i:92139881 original size:25 final size:26
Alignment explanation
Indices: 92139853--92139903 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
92139843 ATATGCAATC
92139853 TTAGATATGAT-TGCAATCTTAGATA
1 TTAGATATGATATGCAATCTTAGATA
92139878 TTAGATATGATATGCAATCTTAGATA
1 TTAGATATGATATGCAATCTTAGATA
92139904 CGATACAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (26 bp):
TTAGATATGATATGCAATCTTAGATA
Found at i:92139962 original size:17 final size:19
Alignment explanation
Indices: 92139840--92139955 Score: 132
Period size: 19 Copynumber: 5.9 Consensus size: 19
92139830 ATAATCTTCA
92139840 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92139859 ATGAT-TGCAATCTTAGATATTAGAT
1 ATGATATGCAATC-------TTAGAT
92139884 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
92139903 ACGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92139920 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
92139938 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
92139956 AGATATGATT
Statistics
Matches: 84, Mismatches: 2, Indels: 22
0.78 0.02 0.20
Matches are distributed among these distances:
17 15 0.18
18 23 0.27
19 28 0.33
25 11 0.13
26 7 0.08
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:92139981 original size:22 final size:22
Alignment explanation
Indices: 92139840--92139978 Score: 94
Period size: 18 Copynumber: 6.8 Consensus size: 22
92139830 ATAATCTTCA
92139840 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92139859 ATGAT-TGCAATCTTAGATATTAGAT
1 ATGATATGCAATCTTAG--A--AGAT
92139884 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
92139903 ACGATA--CAATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
92139920 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
92139938 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
92139960 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
92139979 GATTTAATTT
Statistics
Matches: 97, Mismatches: 4, Indels: 34
0.72 0.03 0.25
Matches are distributed among these distances:
17 13 0.13
18 23 0.24
19 23 0.24
22 8 0.08
23 12 0.12
25 9 0.09
26 9 0.09
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:92145535 original size:19 final size:19
Alignment explanation
Indices: 92145508--92145556 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
92145498 CTTCTATTTC
92145508 AAAAAAAAAAG-GAAAAAAG
1 AAAAAAAAAAGAG-AAAAAG
*
92145527 AAAAGAAAAAGAGAAAAAG
1 AAAAAAAAAAGAGAAAAAG
92145546 AAAAAATAAAA
1 AAAAAA-AAAA
92145557 AATGGAGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAAGAGAAAAAG
Found at i:92145557 original size:13 final size:12
Alignment explanation
Indices: 92145508--92145557 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
92145498 CTTCTATTTC
*
92145508 AAAAAAAAAAGG
1 AAAAAAAAAAAG
*
92145520 AAAAAAGAAAAG
1 AAAAAAAAAAAG
92145532 AAAAAGAGAAAAAG
1 AAAAA-A-AAAAAG
92145546 AAAAAATAAAAA
1 AAAAAA-AAAAA
92145558 ATGGAGAGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
12 15 0.47
13 7 0.22
14 10 0.31
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:92146605 original size:44 final size:45
Alignment explanation
Indices: 92146463--92146756 Score: 203
Period size: 44 Copynumber: 6.6 Consensus size: 45
92146453 TAAAGAAACA
92146463 AGATTTGGCATCCCTGTGTTTATAGGGAA-ATAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
* ** * * * **
92146508 AGATCTAACA-CTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
** *
92146553 A-ACATGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* *
92146596 AGATTTGGCATCTCTGTGTTTATAGGGAA-TAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * * * ***
92146640 AGATCTGACAT-TCTAGTGCTTACA-GCAAAACAGATCAAAGATTTT
1 AGATTTGGCATCCCT-GTGTTTATAGGGAACA-AGATCGAAGATAGC
** * *
92146685 A-ACATAGCATCCCTGTGTTTATAGGGAACAAGGT-GAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* *
92146728 AGATTTGGCATCCCTGTATTTACAGGGAA
1 AGATTTGGCATCCCTGTGTTTATAGGGAA
92146757 TAAATCAAAG
Statistics
Matches: 184, Mismatches: 52, Indels: 27
0.70 0.20 0.10
Matches are distributed among these distances:
43 24 0.13
44 108 0.59
45 52 0.28
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (45 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
Found at i:92146701 original size:132 final size:132
Alignment explanation
Indices: 92146463--92146781 Score: 478
Period size: 132 Copynumber: 2.4 Consensus size: 132
92146453 TAAAGAAACA
*
92146463 AGATTTGGCATCCCTGTGTTTATAGGGAAATAGATCGAAGATAGCAGATCTAACACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGG-AATAGATCGAAGATAGCAGATCTGACACTCCTGTGCT
* * * * *
92146528 TACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
65 TACAGCAAAACAGATCAAAGATTTCAACATAGCATCCCTGTGTTTATAGGGAACAAGGTGAAGAT
92146593 AGC
130 AGC
* *
92146596 AGATTTGGCATCTCTGTGTTTATAGGGAATAGATCGAAGATAGCAGATCTGACA-TTCTAGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGGAATAGATCGAAGATAGCAGATCTGACACTCCT-GTGCT
*
92146660 TACAGCAAAACAGATCAAAGATTTTAACATAGCATCCCTGTGTTTATAGGGAACAAGGTGAAGAT
65 TACAGCAAAACAGATCAAAGATTTCAACATAGCATCCCTGTGTTTATAGGGAACAAGGTGAAGAT
92146725 AGC
130 AGC
* * * *
92146728 AGATTTGGCATCCCTGTATTTACAGGGAATAAATCAAAGACATAGCAGATCTGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAATAGATCGAAG--ATAGCAGATCTGA
92146782 TTTTCGGATG
Statistics
Matches: 169, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
131 3 0.02
132 127 0.75
133 26 0.15
134 13 0.08
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAATAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCAAAACAGATCAAAGATTTCAACATAGCATCCCTGTGTTTATAGGGAACAAGGTGAAGATA
GC
Found at i:92146950 original size:175 final size:175
Alignment explanation
Indices: 92146729--92147304 Score: 886
Period size: 175 Copynumber: 3.3 Consensus size: 175
92146719 GAAGATAGCA
* * * * * * *
92146729 GATTTGGCATCCCTGTATTTACAGGGAATAAATCAAAGACATAGCAGATCTGATTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
* *
92146794 TTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAAAGCAGGA-ACA
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCA-GATACA
* * * *
92146858 TAGCAGGTGTAACCTTCAGATG-TTTATACTGAAGCAGATCCATGAT
130 TAGCAGATCTAACCTTCAGATGATTT-TACTGAAGTAGATCCAAGAT
*
92146904 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
* * *
92146969 CTCACACCAAAGCAGATCTAAGATAACAGATCTGGCATCTCCATTTTGATGGAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACAT
92147034 AGCAGATCTAACCTTCAGATGATTTTACTGAAGTAGATCCAAGAT
131 AGCAGATCTAACCTTCAGATGATTTTACTGAAGTAGATCCAAGAT
* *
92147079 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAAATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
* *
92147144 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCTATTTCGACAGAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACAT
*
92147209 AGTAGATCTAACCTTCAGATGATTTTACTGAAGTAGATCCAAGAT
131 AGCAGATCTAACCTTCAGATGATTTTACTGAAGTAGATCCAAGAT
* * * *
92147254 GATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAACAGATTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTT
92147305 AGCTTTCATG
Statistics
Matches: 369, Mismatches: 30, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
174 2 0.01
175 364 0.99
176 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (175 bp):
GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACAT
AGCAGATCTAACCTTCAGATGATTTTACTGAAGTAGATCCAAGAT
Found at i:92147835 original size:18 final size:18
Alignment explanation
Indices: 92147790--92147873 Score: 134
Period size: 18 Copynumber: 4.7 Consensus size: 18
92147780 TTCAATGAAA
92147790 TGCAATCTTAGATATGA-
1 TGCAATCTTAGATATGAT
* *
92147807 TACAATTTTAGATATGAT
1 TGCAATCTTAGATATGAT
92147825 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
92147843 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
92147861 ATGCAATCTTAGA
1 -TGCAATCTTAGA
92147874 AGATATGATT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
17 15 0.25
18 34 0.56
19 12 0.20
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (18 bp):
TGCAATCTTAGATATGAT
Found at i:92147899 original size:22 final size:22
Alignment explanation
Indices: 92147816--92147896 Score: 79
Period size: 18 Copynumber: 4.0 Consensus size: 22
92147806 ATACAATTTT
92147816 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
92147834 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
92147852 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
92147874 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
92147897 GATTTAATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
18 27 0.48
19 9 0.16
22 8 0.14
23 12 0.21
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:92153653 original size:27 final size:27
Alignment explanation
Indices: 92153615--92153666 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
92153605 TAAGACCTCA
92153615 GTTTGTAAAATTACCGAAATACCCCCT
1 GTTTGTAAAATTACCGAAATACCCCCT
*
92153642 GTTTGTAAAATTACCGGAATACCCC
1 GTTTGTAAAATTACCGAAATACCCC
92153667 TGTAGGGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (27 bp):
GTTTGTAAAATTACCGAAATACCCCCT
Found at i:92153676 original size:27 final size:27
Alignment explanation
Indices: 92153619--92153679 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
92153609 ACCTCAGTTT
**
92153619 GTAAAATTACCGAAATACCCCCTGTTT
1 GTAAAATTACCGAAATACCCCCTGTGG
*
92153646 GTAAAATTACCGGAATA-CCCCTGTAGG
1 GTAAAATTACCGAAATACCCCCTGT-GG
92153673 GTAAAAT
1 GTAAAAT
92153680 GACTGTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCCTGTGG
Found at i:92154142 original size:27 final size:27
Alignment explanation
Indices: 92154085--92154184 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
92154075 ATTATGGTTT
* * ** * *
92154085 TGTGCAAATCGTATTTACCAATGGCTA
1 TGTGCCAATCATATTTACTGATGACTC
* *
92154112 TGTGCCTATCATATTTATTGATGACTC
1 TGTGCCAATCATATTTACTGATGACTC
* * *
92154139 TGTGTCAATCATATTTACTGATGGCTG
1 TGTGCCAATCATATTTACTGATGACTC
* *
92154166 TGTGCCGATTATA-TTACTG
1 TGTGCCAATCATATTTACTG
92154185 TCGCTGATGG
Statistics
Matches: 57, Mismatches: 16, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
26 6 0.11
27 51 0.89
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
TGTGCCAATCATATTTACTGATGACTC
Found at i:92154508 original size:27 final size:26
Alignment explanation
Indices: 92154452--92154508 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
92154442 TGTTACTAAG
* * *
92154452 ATGGGCTAGGCCCAATTGATTCTGTT
1 ATGGGCTAGACCCAAATGATTCTGTA
92154478 ATGGGCTATGACCCAAATGATAT-TGTA
1 ATGGGCTA-GACCCAAATGAT-TCTGTA
92154505 ATGG
1 ATGG
92154509 CCTTTGGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 8 0.31
27 17 0.65
28 1 0.04
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (26 bp):
ATGGGCTAGACCCAAATGATTCTGTA
Found at i:92157346 original size:35 final size:35
Alignment explanation
Indices: 92157307--92157376 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
92157297 TGCGAGGTAA
*
92157307 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTAGGTATCAATGATAGTTTCACT
92157342 GTTATTTGAACTTAGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTAGGTATCAATGATAGTTTCACT
92157377 AACACTTTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (35 bp):
GTTATTTGAACTTAGGTATCAATGATAGTTTCACT
Found at i:92158055 original size:3 final size:3
Alignment explanation
Indices: 92158047--92158119 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
92158037 AAACCTAGTT
92158047 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92158095 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
92158120 AAGCTACCTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:92162752 original size:29 final size:28
Alignment explanation
Indices: 92162707--92162761 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
92162697 AAGTTATACC
92162707 AATTTGGCCTCGAGCCATGAATATCAGCT
1 AATTTGGCCTCGAGCCATG-ATATCAGCT
* *
92162736 AATTTGGCTTCGGGCCATGATATCAG
1 AATTTGGCCTCGAGCCATGATATCAG
92162762 TATTTCGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (28 bp):
AATTTGGCCTCGAGCCATGATATCAGCT
Found at i:92163910 original size:18 final size:18
Alignment explanation
Indices: 92163872--92163910 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
92163862 AATTTGGTTA
* **
92163872 TTTTAATAAAATATTTCT
1 TTTTAATAAAATAATGAT
92163890 TTTTAATAAAATAATGAT
1 TTTTAATAAAATAATGAT
92163908 TTT
1 TTT
92163911 GGTCTTACGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTAATAAAATAATGAT
Found at i:92164486 original size:131 final size:129
Alignment explanation
Indices: 92164326--92164568 Score: 355
Period size: 131 Copynumber: 1.9 Consensus size: 129
92164316 TTTAGAGAGT
* *
92164326 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTG-AACAAGCAGGAAATCGCAACCCAGCACA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAG--GGAAATCGCAACCCAGCACA
*
92164390 ATAG-GCCAGGATTCCCCGAATCACCAAATATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAA
64 ATAGAG-CAGGATT-CCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAA
92164454 GAC
127 GAC
* *
92164457 ATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAAAAAAGGGAAATCGCAACCCAGCACGAT
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAGGGAAATCGCAACCCAGCACAAT
* ** *
92164522 AGAGCATGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTT
66 AGAGCAGGATTCCCGAATCACCAAACATCGAGTATTACCTTCGTTTT
92164569 AGAGAATTTT
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
129 32 0.32
130 29 0.29
131 35 0.35
132 5 0.05
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (129 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAGGGAAATCGCAACCCAGCACAAT
AGAGCAGGATTCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAAGAC
Found at i:92164582 original size:129 final size:130
Alignment explanation
Indices: 92164326--92164582 Score: 351
Period size: 129 Copynumber: 2.0 Consensus size: 130
92164316 TTTAGAGAGT
* *
92164326 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAGCAGGAAATCGCAACCCAGCACAA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAG-AGGAAATCGCAACCCAGCACAA
* *
92164391 TAGGCCAGGATTCCCCGAATCACCAAATATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAAGA
65 TAGGCCAGGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAATTATTAAAGA
92164456 C
130 C
* *
92164457 ATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAAAAA-AGGGAAATCGCAACCCAGCACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAGA-GGAAATCGCAACCCAGCACAA
* ** * *
92164521 TAGAG-CATGATT-CCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTT-AGAGAATTTTTAAA
65 TAG-GCCAGGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGA-AGAATTATTAAA
92164583 AGAATAATTA
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
128 1 0.01
129 43 0.38
130 29 0.26
131 39 0.35
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (130 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAGAGGAAATCGCAACCCAGCACAAT
AGGCCAGGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAATTATTAAAGAC
Found at i:92167053 original size:17 final size:17
Alignment explanation
Indices: 92167018--92167067 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
92167008 GTTATAATAT
*
92167018 TTTTTTTGATTTGTTTT-
1 TTTTTTTG-TCTGTTTTG
*
92167035 TTATTTT-TC-GTTTTG
1 TTTTTTTGTCTGTTTTG
92167050 TTTTTTTGTCTGTTTTG
1 TTTTTTTGTCTGTTTTG
92167067 T
1 T
92167068 CTTTGCACGG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
14 5 0.19
15 7 0.26
16 2 0.07
17 13 0.48
ACGTcount: A:0.04, C:0.04, G:0.14, T:0.78
Consensus pattern (17 bp):
TTTTTTTGTCTGTTTTG
Found at i:92167623 original size:45 final size:45
Alignment explanation
Indices: 92167536--92167624 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
92167526 GGTGGCTTAA
* * * *
92167536 ATCTGCTTCATTGCAACTTCAGGAAGACAAGACTCGCCATCTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGACTCACAATCTTCG
*
92167581 ATCTGCTCCACTGCAACTTCAGGGAGACAAGA-TCTACAATCTTC
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGACTC-ACAATCTTC
92167625 AGCCTACTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 2 0.05
45 36 0.95
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (45 bp):
ATCTGCTCCACTGCAACTTCAGGAAGACAAGACTCACAATCTTCG
Found at i:92167623 original size:133 final size:133
Alignment explanation
Indices: 92167468--92167748 Score: 409
Period size: 133 Copynumber: 2.1 Consensus size: 133
92167458 ACTACTGCTT
* ** * * * * *
92167468 AGGGAGACAAAATCTGTAATCTTCGGCCTACTCTACTACAACTTTAGGGAGCTAGGGTGGTGGCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
* * *
92167533 TAAATCTGCTTCATTGCAACTTCAGGAAGACAAGACTCGCCATCTTCGATCTGCTCCACTGCAAC
66 TAAATCTGCTTCACTACAACTTCAGGAAGACAAGACTCGCCATCTTCAATCTGCTCCACTGCAAC
92167598 TTC
131 TTC
92167601 AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
* * * *
92167666 TAAATCTGCTTCACTACAACTTCAGGAAGACAAGATTCGCCGTCTTCAATCTGTTCCACTGTAAC
66 TAAATCTGCTTCACTACAACTTCAGGAAGACAAGACTCGCCATCTTCAATCTGCTCCACTGCAAC
*
92167731 TTT
131 TTC
*
92167734 AGGGAGACGAGATCT
1 AGGGAGACAAGATCT
92167749 GTGAATTCAC
Statistics
Matches: 131, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (133 bp):
AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
TAAATCTGCTTCACTACAACTTCAGGAAGACAAGACTCGCCATCTTCAATCTGCTCCACTGCAAC
TTC
Found at i:92167635 original size:45 final size:45
Alignment explanation
Indices: 92167547--92167652 Score: 108
Period size: 45 Copynumber: 2.4 Consensus size: 45
92167537 TCTGCTTCAT
* * * * *
92167547 TGCAACTTCAGGAAGACAAGACTCGCCATCTTCGATCTGCTCCAC
1 TGCAACTTCAGGGAGACAAGACTCACAATCTTCGACCTACTCCAC
92167592 TGCAACTTCAGGGAGACAAGA-TCTACAATCTTC-AGCCTACTCCAC
1 TGCAACTTCAGGGAGACAAGACTC-ACAATCTTCGA-CCTACTCCAC
* * *
92167637 TACAAATTTAGGGAGA
1 TGCAACTTCAGGGAGA
92167653 TAAGGTGGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 3 0.06
45 48 0.94
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (45 bp):
TGCAACTTCAGGGAGACAAGACTCACAATCTTCGACCTACTCCAC
Found at i:92174611 original size:60 final size:60
Alignment explanation
Indices: 92174518--92174638 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
92174508 TACATGAGCG
92174518 TTGAATAGGTTCTGGTACAGCTCCCTATACGTCATGGGTATAGGGTTTAACTGTGGCCTT
1 TTGAATAGGTTCTGGTACAGCTCCCTATACGTCATGGGTATAGGGTTTAACTGTGGCCTT
92174578 TTGAATAGGTTCTGGTACAGCTCCCTATACGTCATGGGTATAGGGTTTAACTGTGGCCTT
1 TTGAATAGGTTCTGGTACAGCTCCCTATACGTCATGGGTATAGGGTTTAACTGTGGCCTT
92174638 T
1 T
92174639 CTGTGTTCTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (60 bp):
TTGAATAGGTTCTGGTACAGCTCCCTATACGTCATGGGTATAGGGTTTAACTGTGGCCTT
Found at i:92179628 original size:129 final size:128
Alignment explanation
Indices: 92179372--92179625 Score: 352
Period size: 128 Copynumber: 2.0 Consensus size: 128
92179362 TTTAGAGAGT
* * *
92179372 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAGCAGGAAATCGCAACCCAGCACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAG-AGGAAATCACAACCCAGCACGA
* * *
92179437 TAGGGCAAGATTCCCCGAATCACCAAATATCGAGTATTACCTTCGTTTTGAAGTTTTTAAAGAC
65 TAGAGCAAGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAATTTTTAAAGAC
*
92179501 ATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAAAAA-AGGGAAATCACAACCCAGCACGA
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAGA-GGAAATCACAACCCAGCACGA
* ** *
92179565 TAGAGCATGATT-CCC-AATTGCCAAACATCGAGTATTGCCTTCGTTTTAGAGAATTTTTAAA
65 TAGAGCAAGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTT-GA-AATTTTTAAA
92179626 AGAATAATTA
Statistics
Matches: 111, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
126 28 0.25
127 6 0.05
128 39 0.35
129 38 0.34
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (128 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAGAGGAAATCACAACCCAGCACGAT
AGAGCAAGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAATTTTTAAAGAC
Found at i:92181601 original size:43 final size:42
Alignment explanation
Indices: 92181545--92181665 Score: 145
Period size: 41 Copynumber: 2.9 Consensus size: 42
92181535 GCTAAAACTT
* * *
92181545 TAAAGACCAGGACTTATAGTGGCACTTATATAAAAAACGCCGC
1 TAAAGACAAGGACTTATAGAGGC-CTTATTTAAAAAACGCCGC
* * *
92181588 TAATGACAAGGACTTATAGCGG-CTTTTTTAAAAAACGCCGC
1 TAAAGACAAGGACTTATAGAGGCCTTATTTAAAAAACGCCGC
* *
92181629 TAAAGACCAGTACTTATAGAGGCGCTTATTTAAAAAA
1 TAAAGACAAGGACTTATAGAGGC-CTTATTTAAAAAA
92181666 AAGCCGCGAA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
41 35 0.53
43 31 0.47
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (42 bp):
TAAAGACAAGGACTTATAGAGGCCTTATTTAAAAAACGCCGC
Found at i:92181704 original size:43 final size:44
Alignment explanation
Indices: 92181609--92181848 Score: 265
Period size: 43 Copynumber: 5.5 Consensus size: 44
92181599 ACTTATAGCG
* * ** * *
92181609 GCTTTTTTAAAAAA-CGCCGCT-AAAGACCAGTACTTATAGAGGC
1 GCTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTT-TAGTGGC
* ** * *
92181652 GCTTATTTAAAAAAAAGCCGCGAAAAGTCTTGTTCTTTAGTGGC
1 GCTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGC
*
92181696 G-TTTTTTAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGC
1 GCTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGC
*
92181739 GTTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGC
1 GCTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGC
* * * * *
92181783 G-TTTTTTTAAAAAGTGCCACTAAAAGTCCTGGTCTTTAGCGGC
1 GCTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGC
*
92181826 GCTTTTTTAAAAAA-CGCCGCTAA
1 GCTTTTTTAAAAAAGCGCCACTAA
92181849 TTTGCCCAGT
Statistics
Matches: 172, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
43 97 0.56
44 65 0.38
45 10 0.06
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (44 bp):
GCTTTTTTAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGC
Found at i:92181748 original size:87 final size:87
Alignment explanation
Indices: 92181611--92181839 Score: 291
Period size: 87 Copynumber: 2.6 Consensus size: 87
92181601 TTATAGCGGC
* * * * *
92181611 TTTTTTAAAAAA-CGCCGCT-AAAGACCAGTACTTATAGAGGCGCTTATTTAAAAAAAAGCCGCG
1 TTTTTTAAAAAAGCGCCGCTAAAAGTCCTGTTCTT-TAGAGGCGCTTTTTTAAAAAAAAGCCACG
92181674 AAAAGTCTTGTTCTTTAGTGGCG
65 AAAAGTCTTGTTCTTTAGTGGCG
* * * ** *
92181697 TTTTTTAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGCGTTTTTTTAAAAAAGCGCCACTA
1 TTTTTTAAAAAAGCGCCGCTAAAAGTCCTGTTCTTTAGAGGCGCTTTTTTAAAAAAAAGCCACGA
92181762 AAAGTCTTGTTCTTTAGTGGCG
66 AAAGTCTTGTTCTTTAGTGGCG
* * * * *
92181784 TTTTTTTAAAAAGTGCCACTAAAAGTCCTGGTCTTTAGCGGCGCTTTTTTAAAAAA
1 TTTTTTAAAAAAGCGCCGCTAAAAGTCCTGTTCTTTAGAGGCGCTTTTTTAAAAAA
92181840 CGCCGCTAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
86 12 0.10
87 101 0.82
88 10 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (87 bp):
TTTTTTAAAAAAGCGCCGCTAAAAGTCCTGTTCTTTAGAGGCGCTTTTTTAAAAAAAAGCCACGA
AAAGTCTTGTTCTTTAGTGGCG
Found at i:92182166 original size:21 final size:21
Alignment explanation
Indices: 92182142--92182181 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
92182132 GTTCTGCTCT
92182142 GCCTCCCTCGCTGCTGCCTCC
1 GCCTCCCTCGCTGCTGCCTCC
92182163 GCCTCCCTCGCTGCTGCCT
1 GCCTCCCTCGCTGCTGCCT
92182182 TCGCTCTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.55, G:0.20, T:0.25
Consensus pattern (21 bp):
GCCTCCCTCGCTGCTGCCTCC
Found at i:92190864 original size:28 final size:28
Alignment explanation
Indices: 92190799--92190899 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
92190789 ATAGTGAATC
*
92190799 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
92190828 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
92190856 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
92190886 CGCACACTTAGTGC
1 CGCACACTTAGTGC
92190900 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:92193167 original size:40 final size:40
Alignment explanation
Indices: 92193123--92193203 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
92193113 CATGCTTGTT
92193123 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
1 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
92193163 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
1 CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
92193203 C
1 C
92193204 TTATATATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (40 bp):
CATGGAAGGAGTTGCTCAAATGGCTTCCAAAGCTTTTCAA
Found at i:92194544 original size:83 final size:82
Alignment explanation
Indices: 92194413--92194615 Score: 282
Period size: 83 Copynumber: 2.5 Consensus size: 82
92194403 CTTTTTTTTC
* * * * *
92194413 TTTTTGTGGCGTTTTTTAAAAAAAACGCCGGTACTCCCCTAAAAATCCAATTAAAACGACGTCGT
1 TTTTTGCGGCGTTTTTT-TAAAAAACGCCGCTACTCTCCTAAAAATCCAATTAAAACGACGCCGT
92194478 TTTCGTTAAACTACTATGT
65 TTTCGTT-AACTACTATGT
* *
92194497 TTTTTGCGGCGTTTTTTTGAAAAACGCCGCTACTCTCCTAAATATCCAATTAAAACGACGCCGTT
1 TTTTTGCGGCGTTTTTTTAAAAAACGCCGCTACTCTCCTAAAAATCCAATTAAAACGACGCCGTT
*
92194562 TTCGTTAACTGCTATGT
66 TTCGTTAACTACTATGT
* *
92194579 TTTTTGCGGC-TTTTTTTAAATAAACGCCACTAATCTC
1 TTTTTGCGGCGTTTTTTTAAA-AAACGCCGCTACTCTC
92194616 TTAGTTTTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
81 9 0.08
82 34 0.32
83 48 0.45
84 16 0.15
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (82 bp):
TTTTTGCGGCGTTTTTTTAAAAAACGCCGCTACTCTCCTAAAAATCCAATTAAAACGACGCCGTT
TTCGTTAACTACTATGT
Found at i:92195029 original size:14 final size:14
Alignment explanation
Indices: 92195012--92195043 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
92195002 TAAACCTCAT
92195012 ACCCCAAACCATAA
1 ACCCCAAACCATAA
*
92195026 ACCCCAAATCATAA
1 ACCCCAAACCATAA
92195040 ACCC
1 ACCC
92195044 TAGACCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.44, G:0.00, T:0.09
Consensus pattern (14 bp):
ACCCCAAACCATAA
Found at i:92195578 original size:41 final size:41
Alignment explanation
Indices: 92195511--92195594 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 41
92195501 TTATATGACT
*
92195511 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTATGGTC
**
92195552 TTTAGCGGCGCTTTTATTAAAA-CGCCGCTAATGCTATGGTC
1 TTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTATGGTC
92195593 TT
1 TT
92195595 CAGCTCTGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
41 30 0.77
42 9 0.23
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTATGGTC
Found at i:92195653 original size:40 final size:39
Alignment explanation
Indices: 92195597--92195709 Score: 136
Period size: 41 Copynumber: 2.8 Consensus size: 39
92195587 ATGGTCTTCA
*
92195597 GCTCTGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAAT
1 GCTCT-GTTTTTAGCGGCGTTTTACCAAAA-CGCCGCTAAT
* * *
92195638 GCTCTGTTTTTAGCGGTGCTTTTTACTAAAACGCCGCTATT
1 GCTCTGTTTTTAGC-G-GCGTTTTACCAAAACGCCGCTAAT
*
92195679 GCTCTGTTTTTAGCGGCGTCTTACCCAAAAC
1 GCTCTGTTTTTAGCGGCGTTTTA-CCAAAAC
92195710 ACCACTATTC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
39 6 0.10
40 15 0.24
41 29 0.47
42 12 0.19
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (39 bp):
GCTCTGTTTTTAGCGGCGTTTTACCAAAACGCCGCTAAT
Found at i:92202996 original size:5 final size:5
Alignment explanation
Indices: 92202986--92203011 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
92202976 ATTTCTATAC
92202986 TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT T
92203012 TATGTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TAATT
Found at i:92205657 original size:22 final size:21
Alignment explanation
Indices: 92205627--92205692 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
92205617 TACAAATTAA
92205627 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
92205649 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
92205670 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
92205689 ATCT
1 ATCT
92205693 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:92205679 original size:19 final size:19
Alignment explanation
Indices: 92205644--92205741 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
92205634 AGATTACAAG
92205644 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
92205665 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92205684 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
92205701 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92205720 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
92205739 ATC
1 ATC
92205742 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:92205708 original size:36 final size:37
Alignment explanation
Indices: 92205644--92205741 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
92205634 AGATTACAAG
92205644 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
92205684 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
92205720 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
92205742 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:92206331 original size:44 final size:43
Alignment explanation
Indices: 92206297--92206391 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
92206287 GTTTATTTGA
** *
92206297 AAAAACGCTGCTAAAGATCAAGACCTTTAGCGGCGCTTTCCCT
1 AAAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTACCT
* *
92206340 ACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCCT
1 AAAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTACCT
*
92206383 ACAAACGCC
1 AAAAACGCC
92206392 GCTTAGCGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.21
Consensus pattern (43 bp):
AAAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTACCT
Found at i:92206347 original size:43 final size:43
Alignment explanation
Indices: 92206307--92206391 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
92206297 AAAAACGCTG
92206307 CTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTACAAACGCCA
1 CTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTACAAACGCCA
*
92206350 CTAAAGATCAAGACCTTTAGCGGCGCTTTTCCTACAAACGCC
1 CTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTACAAACGCC
92206392 GCTTAGCGAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.22
Consensus pattern (43 bp):
CTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTACAAACGCCA
Found at i:92206406 original size:28 final size:28
Alignment explanation
Indices: 92206366--92206422 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
92206356 ATCAAGACCT
*
92206366 TTAGCGGCGCTTTTCCTACAAACGCCGC
1 TTAGCGACGCTTTTCCTACAAACGCCGC
*
92206394 TTAGCGACGCTTTTCCTAGAAACGCCGC
1 TTAGCGACGCTTTTCCTACAAACGCCGC
92206422 T
1 T
92206423 AAAGATCACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.26
Consensus pattern (28 bp):
TTAGCGACGCTTTTCCTACAAACGCCGC
Found at i:92206417 original size:71 final size:71
Alignment explanation
Indices: 92206323--92206465 Score: 216
Period size: 71 Copynumber: 2.0 Consensus size: 71
92206313 ATCAAGACCT
* *
92206323 TTAGCGGCGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTC-CTACAA
1 TTAGCGACGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCTC-AAAA
92206387 ACGCCGC
65 ACGCCGC
* * * *
92206394 TTAGCGACGCTTTTCCTAGAAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCTCAAAAA
1 TTAGCGACGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCTCAAAAA
92206459 CGCCGC
66 CGCCGC
92206465 T
1 T
92206466 AAAAGTCATG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
71 64 0.98
72 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (71 bp):
TTAGCGACGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTTCTCAAAAA
CGCCGC
Found at i:92208270 original size:27 final size:27
Alignment explanation
Indices: 92208179--92208289 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
92208169 AGCATGGCTG
*
92208179 CCAGAACAGATA-ATGT-GACAGAGTCA
1 CCAGAACAGATATATGTAG-CAGAGCCA
* *
92208205 CCAGATACAGATA-ATCGTGGTAGAGCCA
1 CCAGA-ACAGATATAT-GTAGCAGAGCCA
92208233 CCAGAACAGATATATGTAGCAGAGCCA
1 CCAGAACAGATATATGTAGCAGAGCCA
** * * *
92208260 CCAGATTAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTAGCAGAGCCA
92208287 CCA
1 CCA
92208290 CAACGCTTCC
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.07
27 51 0.71
28 15 0.21
29 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATATATGTAGCAGAGCCA
Found at i:92208271 original size:54 final size:54
Alignment explanation
Indices: 92208179--92208289 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
92208169 AGCATGGCTG
* *
92208179 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
92208233 CCAGAACAGATATATGT-AGCAGAGCCACCAGAT-TAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGA-CAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
92208287 CCA
1 CCA
92208290 CAACGCTTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:92209943 original size:26 final size:26
Alignment explanation
Indices: 92209907--92210016 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
92209897 ACATGAAATT
92209907 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
92209933 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
92209959 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
92209985 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
92210011 TTATCA
1 TTATCA
92210017 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:92210783 original size:15 final size:15
Alignment explanation
Indices: 92210763--92210792 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92210753 CTCAGATGAA
*
92210763 CAAAAATGGTACATC
1 CAAAAATGGAACATC
92210778 CAAAAATGGAACATC
1 CAAAAATGGAACATC
92210793 GAAACATCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.13, T:0.17
Consensus pattern (15 bp):
CAAAAATGGAACATC
Found at i:92214990 original size:18 final size:19
Alignment explanation
Indices: 92214953--92214991 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
92214943 AAATCATATT
92214953 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
92214972 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
92214990 TA
1 TA
92214992 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:92215573 original size:24 final size:24
Alignment explanation
Indices: 92215545--92215593 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
92215535 CCAAAATAAC
92215545 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
92215569 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
92215593 A
1 A
92215594 CAAATATACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:92215591 original size:12 final size:12
Alignment explanation
Indices: 92215552--92215592 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
92215542 AACAATTAAT
92215552 TTTTATATAAAC
1 TTTTATATAAAC
* * *
92215564 TTTTAAATTAAT
1 TTTTATATAAAC
92215576 TTTTATATAAAC
1 TTTTATATAAAC
92215588 TTTTA
1 TTTTA
92215593 ACAAATATAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:92216055 original size:41 final size:40
Alignment explanation
Indices: 92216010--92216129 Score: 125
Period size: 41 Copynumber: 2.9 Consensus size: 40
92216000 TTATATAACT
* * *
92216010 TTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTA-CAAAAACGCCGCTAATGCTCTGATC
*** *
92216051 TTTAGCGGCGTTTTTGGTAAAACGCCGCTAATGCTCT-ATT
1 TTTAGCGGCG-TTTTACAAAAACGCCGCTAATGCTCTGATC
*
92216091 TTTAGCGGCGTTTTAACAAAAAACGCCGCTATTGCTCTG
1 TTTAGCGGCGTTTT-AC-AAAAACGCCGCTAATGCTCTG
92216130 TGTTTTACAA
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
39 4 0.06
40 11 0.17
41 45 0.70
42 4 0.06
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACAAAAACGCCGCTAATGCTCTGATC
Found at i:92216561 original size:206 final size:206
Alignment explanation
Indices: 92216192--92217073 Score: 1275
Period size: 206 Copynumber: 4.3 Consensus size: 206
92216182 TTCCTGTAGT
* * * *
92216192 GTAAGCTCGTGAAAA-CCAAATCAACTATGTCTTCGATTTGATCCTTGTAAGCACAAGGATACCA
1 GTAAGCACGT-AAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
* * * * *
92216256 AACCATCTTAGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCG
65 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCG
92216321 TCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAG
130 TCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAG
92216386 ATTTGCTTCATC
195 ATTTGCTTCATC
* * * * *
92216398 ATAAGCACGTAAAAGCCAAATCAGCTATATTTTCGATTTGTTCCTTGTAAGCAAAAGAATGCCAA
1 GTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
*
92216463 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCAT-CTCTTCG
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTC-TGCTCTCCG
* * *
92216527 TCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGAAAATACAAAGATGCAAAATCATCTTAG
130 TCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAG
92216592 ATTTGCTTCATC
195 ATTTGCTTCATC
* * *
92216604 GTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCCTGTAAGCACAAGAATGCCAA
1 GTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
*
92216669 ATCATCTTGGATCTGCTTCAGTATAAACATTTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
* * * *
92216734 CAAATATGGAGACGCCAAACTTCAATTTGTTCTCTGACAATATAGAGATGACAAATCATCTTAGA
131 CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA
*
92216799 TTTGCTTCATT
196 TTTGCTTCATC
*
92216810 GTAAGCACGT----G---AA--AGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAA
1 GTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
* * * ** * *
92216866 ATCACCTTGGATCTGCTTCAATATAAACATATGAAGGCCAAATTTGCTATGTGTCTGCTCTCCGT
66 ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
* *
92216931 CGAATATGGAGACGCCAAACTTTGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGA
131 CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA
* *
92216996 TTTGCTTTAGC
196 TTTGCTTCATC
* * * *
92217007 GTAAAC-CGTGAAAGCCAAATTAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAA
1 GTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
92217071 ATC
66 ATC
92217074 TGCTATCTTC
Statistics
Matches: 610, Mismatches: 54, Indels: 25
0.89 0.08 0.04
Matches are distributed among these distances:
196 3 0.00
197 172 0.28
199 2 0.00
200 1 0.00
202 1 0.00
203 2 0.00
205 49 0.08
206 379 0.62
207 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
GTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
ATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGT
CGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA
TTTGCTTCATC
Found at i:92217091 original size:44 final size:43
Alignment explanation
Indices: 92217035--92217377 Score: 234
Period size: 44 Copynumber: 7.8 Consensus size: 43
92217025 ATTAGCTATG
* * * *
92217035 TCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTA
1 TCTTCAACTTGTTCCCTATAAACACAAGGATGCC-AATCTGCTA
* * **
92217079 TCTTCAACTTGTTCCCTATAAACACAGGGGTGCC-ATGCTGAAA
1 TCTTCAACTTGTTCCCTATAAACACAAGGATGCCAAT-CTGCTA
* * * * *
92217122 TCTTCGA-TCTGCTTCGCTGTAAGCAC-AGGAATGTCAGATCTGCTA
1 TCTTCAACT-TG-TTCCCTATAAACACAAGG-ATGCCA-ATCTGCTA
** *
92217167 TCTTTGATTTGTTCCCTATAAACAC-AGAGATGCCAAATCTGCTA
1 TCTTCAACTTGTTCCCTATAAACACAAG-GATGCC-AATCTGCTA
* * **
92217211 TCTTCAACTTGTTCCCTATAAACATAGGGATGCC-ATGCTGAAA
1 TCTTCAACTTGTTCCCTATAAACACAAGGATGCCAAT-CTGCTA
* ***
92217254 TCTTCAACTTGTTCCCTATAAACACAGGGATGCC-ATGCTAAAA
1 TCTTCAACTTGTTCCCTATAAACACAAGGATGCCAAT-CTGCTA
* * * *
92217297 TCTTCGA-TCTGCTTCGCTATAAGCACAA-GAGTGTCAGATCTGCTA
1 TCTTCAACT-TG-TTCCCTATAAACACAAGGA-TGCCA-ATCTGCTA
* *
92217342 TCTTCGATTTGTTCCCTATAAACACAAGGATGCCAA
1 TCTTCAACTTGTTCCCTATAAACACAAGGATGCCAA
92217378 ATCTTGTTTC
Statistics
Matches: 239, Mismatches: 42, Indels: 37
0.75 0.13 0.12
Matches are distributed among these distances:
42 6 0.03
43 70 0.29
44 128 0.54
45 29 0.12
46 6 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
TCTTCAACTTGTTCCCTATAAACACAAGGATGCCAATCTGCTA
Found at i:92217201 original size:88 final size:88
Alignment explanation
Indices: 92217053--92217376 Score: 329
Period size: 88 Copynumber: 3.7 Consensus size: 88
92217043 TTGTTCCTTG
* * * *
92217053 TAAGCACAAGG-ATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGGTGCCATGC
1 TAAGCAC-AGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGC
*
92217117 TGAAATCTTCGATCTGCTTCGCTG
65 TGAAATCTTCGATCTGCTTCGCTA
** *
92217141 TAAGCACAGGAATGTCAGATCTGCTATCTTTGATTTGTTCCCTATAAACACAGAGATGCCAAAT-
1 TAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCC--ATG
** * *
92217205 CTGCTATCTTC-AACTTG-TTCCCTA
64 CTGAAATCTTCGATC-TGCTTCGCTA
* * * * ** *
92217229 TAAACATAGGGATG-C-CATGCTGAAATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGC
1 TAAGCACAGGAATGTCAGAT-CTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGC
*
92217292 TAAAATCTTCGATCTGCTTCGCTA
65 TGAAATCTTCGATCTGCTTCGCTA
* * * *
92217316 TAAGCACAAGAGTGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACA-AGGATGCCA
1 TAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAACACAGA-GATGCCA
92217377 AATCTTGTTT
Statistics
Matches: 187, Mismatches: 38, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
85 2 0.01
86 12 0.06
87 55 0.29
88 103 0.55
89 13 0.07
90 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (88 bp):
TAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATAAACACAGAGATGCCATGCT
GAAATCTTCGATCTGCTTCGCTA
Found at i:92218256 original size:10 final size:10
Alignment explanation
Indices: 92218243--92218267 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92218233 CATTTTTTTC
92218243 TTTTTTCTTT
1 TTTTTTCTTT
92218253 TTTTTTCTTT
1 TTTTTTCTTT
92218263 TTTTT
1 TTTTT
92218268 GAAATAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:92224899 original size:40 final size:40
Alignment explanation
Indices: 92224854--92225023 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
92224844 CGGAATACAA
*
92224854 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
92224894 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
92224934 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
92224974 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
92225014 CCGGATATAA
1 CCGGATATAA
92225024 TTTCCAGCAT
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.02
40 115 0.98
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:92225044 original size:80 final size:81
Alignment explanation
Indices: 92224870--92225059 Score: 208
Period size: 80 Copynumber: 2.4 Consensus size: 81
92224860 ATAACCACGT
* * *
92224870 GCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACGAATGCCTTCGGGTCTTAAC
**
92224934 CCGGATAGAACGACTT
66 CCGGATAGAACGACCA
* *
92224950 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTAGCAC-AATTGCCTTCGGGTCTTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACGAA-TGCCTTCGGGTCTTA
* ***
92225012 ACCCGGATATAATTTCCA
64 ACCCGGATAGAACGACCA
* * *
92225030 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
92225060 ATCATTCAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 87 0.93
81 2 0.02
82 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (81 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACGAATGCCTTCGGGTCTTAAC
CCGGATAGAACGACCA
Found at i:92235097 original size:13 final size:13
Alignment explanation
Indices: 92235079--92235112 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
92235069 CTGGGATATC
92235079 AAAACAAGAATTA
1 AAAACAAGAATTA
*
92235092 AAAACACATAATTA
1 AAAACA-AGAATTA
92235106 AAAACAA
1 AAAACAA
92235113 ATTAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.71, C:0.12, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAACAAGAATTA
Found at i:92239559 original size:55 final size:54
Alignment explanation
Indices: 92239491--92239597 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
92239481 ACAAGTCCGA
* * * *
92239491 CCACGGGTGTTCCACACGGGCGTGTCGCACGCCTGTGTTGTTTTGGCAGGCTCAC
1 CCACGGGTCTTCCACAAGGCCGTGTCG-ACGCCCGTGTTGTTTTGGCAGGCTCAC
* *
92239546 CCACGGTTCTTCCACAAGGCCGTGTCGATGCCCGTGTTGTTTTGGCAGGCTC
1 CCACGGGTCTTCCACAAGGCCGTGTCGACGCCCGTGTTGTTTTGGCAGGCTC
92239598 GACCATGGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 23 0.50
55 23 0.50
ACGTcount: A:0.11, C:0.31, G:0.31, T:0.27
Consensus pattern (54 bp):
CCACGGGTCTTCCACAAGGCCGTGTCGACGCCCGTGTTGTTTTGGCAGGCTCAC
Found at i:92243265 original size:13 final size:13
Alignment explanation
Indices: 92243247--92243281 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
92243237 TTAGGATATC
92243247 AAAACAAGAATTA
1 AAAACAAGAATTA
*
92243260 AAAACACATAATTA
1 AAAACA-AGAATTA
92243274 AAAACAAG
1 AAAACAAG
92243282 TTAAATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.69, C:0.11, G:0.06, T:0.14
Consensus pattern (13 bp):
AAAACAAGAATTA
Found at i:92247863 original size:15 final size:15
Alignment explanation
Indices: 92247844--92247873 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
92247834 TAGGATTTTA
92247844 AAAAACTAAAATAAAT
1 AAAAA-TAAAATAAAT
92247860 AAAAATAAAATAAA
1 AAAAATAAAATAAA
92247874 AGTTCCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAATAAAATAAAT
Found at i:92255460 original size:27 final size:27
Alignment explanation
Indices: 92255430--92255489 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
92255420 CAAATTGTAA
92255430 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
****
92255457 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
92255484 AATTAC
1 AATTAC
92255490 TGTTTTACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTATAG
Found at i:92255494 original size:27 final size:27
Alignment explanation
Indices: 92255441--92255567 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
92255431 ATTACCAAAG
* * *
92255441 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
92255468 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
92255495 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
92255522 TACCCTCGATTTACAAAATTACTATAA
1 TACCCTCGATTTACAAAATTACTGTTT
* *
92255549 TACCCTTGGTTTACAAAAT
1 TACCCTCGATTTACAAAAT
92255568 GACCAAAATG
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:92255628 original size:26 final size:27
Alignment explanation
Indices: 92255588--92255880 Score: 211
Period size: 27 Copynumber: 10.8 Consensus size: 27
92255578 CCCTCGATCA
*
92255588 GTAAAATTACCAAAATACCC-TAGTCT
1 GTAAAATTACCAAAATACCCTTAGTTT
* * * *
92255614 GTAAAATTGCTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCTTAGTTT
** *
92255641 GTAAAATTACTGAAATACCCTTAATTT
1 GTAAAATTACCAAAATACCCTTAGTTT
*
92255668 GTAAAATTACCGAAATACCCTTAGTTT
1 GTAAAATTACCAAAATACCCTTAGTTT
*
92255695 GTAAAATTACCAAAATACCAC-TGGTTT
1 GTAAAATTACCAAAATACC-CTTAGTTT
* * * *
92255722 GTGAAATTATCGAAATA-CCTTCAATTT
1 GTAAAATTACCAAAATACCCTT-AGTTT
* *
92255749 GTAAAATTACCAAAATACCCCT-GATT
1 GTAAAATTACCAAAATACCCTTAGTTT
*
92255775 -TACAAAGTTA-CAGAAATACCCTTGACTTT
1 GTA-AAA-TTACCA-AAATACCCTT-AGTTT
* *** * *
92255804 CTAAAAATTATGGAAATACCATTGGTTT
1 GT-AAAATTACCAAAATACCCTTAGTTT
** **
92255832 ACAAAATTACTGAAATACCCTTAGTTT
1 GTAAAATTACCAAAATACCCTTAGTTT
* * *
92255859 GTAGATTTACCAAAACACCCTT
1 GTAAAATTACCAAAATACCCTT
92255881 GTAGGATGAA
Statistics
Matches: 209, Mismatches: 45, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
25 3 0.01
26 27 0.13
27 153 0.73
28 7 0.03
29 14 0.07
30 4 0.02
31 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCTTAGTTT
Found at i:92255695 original size:54 final size:53
Alignment explanation
Indices: 92255588--92255879 Score: 235
Period size: 54 Copynumber: 5.4 Consensus size: 53
92255578 CCCTCGATCA
* * * ** * *
92255588 GTAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTTAGTTT
** **
92255641 GTAAAATTACTGAAATACCCTTAATTTGTAAAATTACCGAAATACCCTTAGTTT
1 GTAAAATTACCAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTTAGTTT
* * *
92255695 GTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATA-CCTTCAATTT
1 GTAAAATTACCAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTT-AGTTT
* ** * * *
92255749 GTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTT
1 GTAAAATTACCAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTT-AGTTT
* *** * ** *
92255804 CTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTAGTTT
1 GT-AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTTAGTTT
* * *
92255859 GTAGATTTACCAAAACACCCT
1 GTAAAATTACCAAAATACCCT
92255880 TGTAGGATGA
Statistics
Matches: 190, Mismatches: 42, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
53 23 0.12
54 111 0.58
55 19 0.10
56 37 0.19
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (53 bp):
GTAAAATTACCAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTTAGTTT
Found at i:92255722 original size:81 final size:80
Alignment explanation
Indices: 92255588--92255879 Score: 272
Period size: 81 Copynumber: 3.6 Consensus size: 80
92255578 CCCTCGATCA
* * *
92255588 GTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTA-C
1 GTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATA-CCCTGGTTTGTAAAATTATC
92255651 TGAAATACCCTTAATTT
65 -GAAATACCCTTAATTT
* *
92255668 GTAAAATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATC
1 GTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACC-CTGGTTTGTAAAATTATC
92255733 GAAATA-CCTTCAATTT
65 GAAATACCCTT-AATTT
* * * *
92255749 GTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CAGAAATACCCTTGACTTTCTAAAAA
1 GTAAAATTACCAAAATACCCTTAGTTTGTA-AAA-TTACCA-AAATACCC-TG-GTTTGT-AAAA
* * **
92255811 TTATGGAAATACCATTGGTTT
60 TTATCGAAATACCCTTAATTT
** ** * * *
92255832 ACAAAATTACTGAAATACCCTTAGTTTGTAGATTTACCAAAACACCCT
1 GTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCT
92255880 TGTAGGATGA
Statistics
Matches: 174, Mismatches: 24, Indels: 26
0.78 0.11 0.12
Matches are distributed among these distances:
79 2 0.01
80 34 0.20
81 78 0.45
82 6 0.03
83 43 0.25
84 9 0.05
85 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTGGTTTGTAAAATTATCG
AAATACCCTTAATTT
Found at i:92255981 original size:27 final size:26
Alignment explanation
Indices: 92255920--92256003 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
92255910 TAGGTAAAAA
*
92255920 GACCGTAAAGCCCATGTAGGATAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
**
92255947 GATTGTAAAGTCCCTGTAGGGTAAAGT
1 GACCGTAAAG-CCCTGTAGGGTAAAGT
* * *
92255974 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
92256001 GAC
1 GAC
92256004 GAATATGCCC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
27 43 0.91
28 4 0.09
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:92256886 original size:52 final size:52
Alignment explanation
Indices: 92256804--92256952 Score: 248
Period size: 52 Copynumber: 2.9 Consensus size: 52
92256794 GAGGAAGTGC
* ** *
92256804 AAAAGGGCTTATGCCTCAGTTTACATAAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
92256856 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
92256908 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
92256953 ATTAAAGAGG
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 10 0.11
51 25 0.27
52 58 0.62
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:92256927 original size:25 final size:26
Alignment explanation
Indices: 92256804--92256952 Score: 214
Period size: 26 Copynumber: 5.8 Consensus size: 26
92256794 GAGGAAGTGC
*
92256804 AAAAGGGCTTATGCCTCAGTTTACAT-
1 AAAAGGGCTTATGCCCCAGTTTAC-TG
* *
92256830 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
92256856 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
92256882 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
92256908 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
92256933 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92256953 ATTAAAGAGG
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
25 34 0.30
26 78 0.70
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:92257161 original size:42 final size:42
Alignment explanation
Indices: 92257096--92257183 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
92257086 TAGTCTCTGC
* * ** * *
92257096 AAATGGGCTTGCATACATTCATTGGTATTTCATCTGATATTG
1 AAATCGGCTTGCATACATCCATTGACATTACATATGATATTG
92257138 AAATCGGCTTGCATACATCCATTGACATTACATATGATATTG
1 AAATCGGCTTGCATACATCCATTGACATTACATATGATATTG
92257180 AAAT
1 AAAT
92257184 GGACCTAAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (42 bp):
AAATCGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:92257288 original size:31 final size:31
Alignment explanation
Indices: 92257211--92257289 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
92257201 CGTTTACAGT
*
92257211 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
92257242 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
92257273 AAAGGATTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
92257290 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:92262926 original size:23 final size:22
Alignment explanation
Indices: 92262843--92262952 Score: 89
Period size: 23 Copynumber: 4.8 Consensus size: 22
92262833 GACTCACCAC
*
92262843 AGCTCGTATGAGCTTACCGATTT
1 AGCTCGTATGAGCTTA-CTATTT
* *
92262866 AGTTCGTAAGAGCTTACTATTTTT
1 AGCTCGTATGAGCTTACTA--TTT
* *
92262890 AGCTCAT-TCAAGCTTACTATTTT
1 AGCTCGTAT-GAGCTTACTA-TTT
* *
92262913 AGCTCGTATGAGCTTACTAGTC
1 AGCTCGTATGAGCTTACTATTT
92262935 AGCTCG-ATAGAGCTTACT
1 AGCTCGTAT-GAGCTTACT
92262953 GTTTCAACTC
Statistics
Matches: 71, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.03
22 18 0.25
23 33 0.46
24 18 0.25
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (22 bp):
AGCTCGTATGAGCTTACTATTT
Found at i:92273542 original size:46 final size:46
Alignment explanation
Indices: 92273475--92273649 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 46
92273465 TGTAACCCGC
*
92273475 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTAT
* * * *
92273521 CCATAAGCGAACTCAGACTCAACTCAATGAGCTC-AG-ATGCCTAGTT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTA--T
* *** * * * * *
92273567 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCAT-AAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTAT
* * *
92273614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGG
92273650 ATGCCCAAAC
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
44 5 0.05
45 1 0.01
46 63 0.62
47 28 0.28
49 4 0.04
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTAT
Found at i:92273609 original size:93 final size:93
Alignment explanation
Indices: 92273483--92273654 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
92273473 GCCCATAAGT
* * *
92273483 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTATCCATAAGCGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGCGAACTCAGACTCAACTCAA
*
92273548 TGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * * *
92273576 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGCGAACTCAGACTCAACTCAA
* *
92273641 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
92273655 CAAACATCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGCGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:92273669 original size:46 final size:46
Alignment explanation
Indices: 92273576--92273661 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 46
92273566 TACATCTCTC
* * **
92273576 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCAGACATGCCCAAACATAAGT
*
92273622 GAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCAAACAT
1 GAACTCGGACTCAACTCAACGAGTTCAGACATGCCCAAACAT
92273662 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 8 0.23
45 1 0.03
46 26 0.74
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACATGCCCAAACATAAGT
Found at i:92284282 original size:28 final size:28
Alignment explanation
Indices: 92284217--92284315 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
92284207 CATGAGATTG
* * *
92284217 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
92284246 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
92284274 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
92284302 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92284316 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:92292297 original size:28 final size:28
Alignment explanation
Indices: 92292232--92292330 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
92292222 CATGAGATTG
* * *
92292232 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
92292261 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
92292289 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
92292317 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92292331 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:92295608 original size:28 final size:27
Alignment explanation
Indices: 92295542--92295611 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
92295532 ATAGTGAGTC
*
92295542 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
92295569 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
92295597 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
92295612 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:92295684 original size:42 final size:42
Alignment explanation
Indices: 92295620--92295726 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
92295610 CTGTACAAAT
*
92295620 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
92295662 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
92295704 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
92295727 GAAATCAACA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:92298341 original size:54 final size:54
Alignment explanation
Indices: 92298224--92298345 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 54
92298214 TTTTTTTAAG
* * *
92298224 TTAGTAAGTTACACGGCCGAGCACACAGCCTGCAACACAGCCGTGTGTGACAAG
1 TTAGTGAGTTACACGGCCGAGCACACAGCCTGCAACACAGCCGTGTATGACAAC
* * * *
92298278 TTAGAGAGTTACACTGCCTG-GCACACGGCCTGCGACACAG-C-TGTATGACCATAC
1 TTAGTGAGTTACACGGCC-GAGCACACAGCCTGCAACACAGCCGTGTATGA-CA-AC
92298332 TTAGTGAGTTACAC
1 TTAGTGAGTTACAC
92298346 ATGTGGGTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
52 6 0.11
53 3 0.05
54 47 0.82
55 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (54 bp):
TTAGTGAGTTACACGGCCGAGCACACAGCCTGCAACACAGCCGTGTATGACAAC
Found at i:92299367 original size:26 final size:26
Alignment explanation
Indices: 92299338--92299445 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
92299328 TGGTTCAAAT
92299338 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
92299364 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
92299390 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
92299416 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
92299442 TGAT
1 TGAT
92299446 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:92303558 original size:4 final size:4
Alignment explanation
Indices: 92303539--92303572 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
92303529 CCGGGCCTTA
92303539 AAAT CAAAT GAAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT -AAAT -AAAT AAAT AAAT AAAT AAAT AAAT
92303573 GATTGTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:92303566 original size:12 final size:13
Alignment explanation
Indices: 92303539--92303574 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
92303529 CCGGGCCTTA
92303539 AAATCAAATGAAAT
1 AAAT-AAATGAAAT
92303553 AAATAAAT-AAAT
1 AAATAAATGAAAT
92303565 AAATAAATGA
1 AAATAAATGA
92303575 TTGTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.57
13 5 0.24
14 4 0.19
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (13 bp):
AAATAAATGAAAT
Found at i:92303732 original size:20 final size:21
Alignment explanation
Indices: 92303702--92303740 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
92303692 ACCCAACAAA
*
92303702 CCCAGACTTAAACTAGACCAG
1 CCCAGACTTAAACCAGACCAG
92303723 CCCA-ACTTAAACCAGACC
1 CCCAGACTTAAACCAGACC
92303741 CAAACAGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.13
Consensus pattern (21 bp):
CCCAGACTTAAACCAGACCAG
Found at i:92304858 original size:46 final size:46
Alignment explanation
Indices: 92304808--92304978 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
92304798 GTTGAGCATA
92304808 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * * *
92304854 CGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
92304901 CGAACTCGTTAAGTTGAGTCCGAGTTTACTTATGGATGCGAATG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
*
92304946 TCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 -CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92304979 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 55 0.55
47 26 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:92304940 original size:93 final size:93
Alignment explanation
Indices: 92304803--92304973 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
92304793 GGATGGTTGA
*
92304803 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-TCCGAACTCGTTGAG
1 GCATACGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCT-CGAACTCGTTGAG
92304867 TTGAGTCCAAGTTCGTGAAATGTAACTAG
65 TTGAGTCCAAGTTCGTGAAATGTAACTAG
* * *
92304896 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTTACTTATGGATGCGAATGCTCGAGCTCGTTGAGT
1 GCATACGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCGAACTCGTTGAGT
*
92304961 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
92304974 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATACGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:92314537 original size:40 final size:39
Alignment explanation
Indices: 92314356--92314537 Score: 161
Period size: 40 Copynumber: 4.6 Consensus size: 39
92314346 GACTCGCTCA
** * **
92314356 AATGCCTTCGGGACGAAGCCCGGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * * *
92314395 GAATGCCTTCGGGACTTAACTCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
92314435 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * * *
92314473 GAATGCCTT-TGGATCCTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCAC
*
92314514 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92314538 CATCATTCGA
Statistics
Matches: 113, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
38 23 0.20
39 20 0.18
40 63 0.56
41 7 0.06
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
Found at i:92320704 original size:17 final size:18
Alignment explanation
Indices: 92320662--92320710 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
92320652 AGTTGAAAAG
92320662 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
92320681 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
92320698 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
92320711 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:92321591 original size:40 final size:40
Alignment explanation
Indices: 92321525--92321691 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92321515 AAATTGAATG
* * *
92321525 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92321564 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
92321604 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92321644 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92321684 ATATCCGG
1 ATATCCGG
92321692 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92328700 original size:17 final size:18
Alignment explanation
Indices: 92328658--92328706 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
92328648 AGTTGAAAAG
92328658 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
92328677 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
92328694 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
92328707 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:92329591 original size:40 final size:40
Alignment explanation
Indices: 92329525--92329691 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
92329515 AAATTGAATG
* * *
92329525 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
92329564 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
92329604 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
92329644 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
92329684 ATATCCGG
1 ATATCCGG
92329692 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:92333662 original size:40 final size:40
Alignment explanation
Indices: 92333631--92333725 Score: 131
Period size: 38 Copynumber: 2.4 Consensus size: 40
92333621 GGTTATAGCG
*
92333631 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCAGGTTTAGTA
* * * *
92333671 ACTTGCAC-AATGCCTTCGGG-CTTAGCCCAGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCAGGTTTAGTA
92333709 ACTCGCACGAATGCCTT
1 ACTCGCACGAATGCCTT
92333726 TGGATCCTAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 21 0.44
39 20 0.42
40 7 0.15
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCAGGTTTAGTA
Found at i:92333688 original size:39 final size:40
Alignment explanation
Indices: 92333600--92333781 Score: 149
Period size: 40 Copynumber: 4.6 Consensus size: 40
92333590 GACTCGCTCA
* ** ** *
92333600 AATGCCTTCAGGACGAAGCCCGG-TTATAGCGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACG
* *
92333640 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * *
92333679 AATGCCTTCGGG-CTTAGCCCAGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * * * *
92333718 AATGCCTT-TGGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACG
*
92333758 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92333782 CATCATTCGA
Statistics
Matches: 112, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
38 23 0.21
39 20 0.18
40 60 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
Found at i:92333724 original size:78 final size:80
Alignment explanation
Indices: 92333631--92333778 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 80
92333621 GGTTATAGCG
* * * *
92333631 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTT-GGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
92333693 TAGCCCAGATTTATTA
65 TAGCCCAGATTTATTA
* ** *
92333709 ACTCGCACGAATGCCTTTGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTGGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
92333774 AGCCC
66 AGCCC
92333779 GGACATCATT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
77 3 0.05
78 33 0.56
79 15 0.25
80 8 0.14
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTGGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCAGATTTATTA
Found at i:92336836 original size:25 final size:24
Alignment explanation
Indices: 92336790--92336849 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
92336780 GTTATTTTTT
*
92336790 TATT-TTAAAAAACTATACATATAA
1 TATTATTAAAATACTATACATAT-A
**
92336814 TATTATTAAAATACTATTTATATA
1 TATTATTAAAATACTATACATATA
92336838 T-TTATATAAAAT
1 TATTAT-TAAAAT
92336850 TTTTATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 4 0.13
24 12 0.39
25 15 0.48
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (24 bp):
TATTATTAAAATACTATACATATA
Found at i:92336871 original size:14 final size:14
Alignment explanation
Indices: 92336852--92336898 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
92336842 TATAAAATTT
92336852 TTATTTATCATATA
1 TTATTTATCATATA
*
92336866 TTATTT-TCCTATA
1 TTATTTATCATATA
* *
92336879 TATATTTATTATATT
1 T-TATTTATCATATA
92336894 TTATT
1 TTATT
92336899 ATATAACATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 7 0.26
14 15 0.56
15 5 0.19
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (14 bp):
TTATTTATCATATA
Found at i:92336913 original size:45 final size:46
Alignment explanation
Indices: 92336831--92336951 Score: 113
Period size: 45 Copynumber: 2.6 Consensus size: 46
92336821 AAAATACTAT
* * * *
92336831 TTATATATTTATATAAAATTT-TTATTTATCATATATTAT-TTTCCTA
1 TTATATATTTAT-TATATTTTATTATATAACATATATTATATTT-CTA
* *
92336877 -TATATATTTATTATATTTTATTATATAACATTTATTATATTTTTA
1 TTATATATTTATTATATTTTATTATATAACATATATTATATTTCTA
*
92336922 TTATATATTACTTATTATTTTTTATTATAT
1 TTATATA-T--TTATTATATTTTATTATAT
92336952 GTTATGTATA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
44 6 0.10
45 28 0.45
46 9 0.15
47 1 0.02
49 18 0.29
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (46 bp):
TTATATATTTATTATATTTTATTATATAACATATATTATATTTCTA
Found at i:92336914 original size:24 final size:24
Alignment explanation
Indices: 92336882--92336951 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
92336872 TCCTATATAT
92336882 ATTTATTATATTTTATTATATAAC
1 ATTTATTATATTTTATTATATAAC
**
92336906 ATTTATTATATTTTTATTATATATT
1 ATTTATTATA-TTTTATTATATAAC
* *
92336931 ACTTATTATTTTTTATTATAT
1 ATTTATTATATTTTATTATAT
92336952 GTTATGTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (24 bp):
ATTTATTATATTTTATTATATAAC
Found at i:92336946 original size:35 final size:34
Alignment explanation
Indices: 92336864--92336951 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
92336854 ATTTATCATA
* *
92336864 TATTATTTTCCTA-TATATATTTATTATATTTTAT
1 TATTATTTT-TTATTATATATTTATTATATATTAT
*** *
92336898 TATATAACATTTATTATATTTTTATTATATATTACT
1 TAT-TATTTTTTATTATATATTTATTATATATTA-T
92336934 TATTATTTTTTATTATAT
1 TATTATTTTTTATTATAT
92336952 GTTATGTATA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
34 5 0.12
35 33 0.79
36 4 0.10
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (34 bp):
TATTATTTTTTATTATATATTTATTATATATTAT
Found at i:92336999 original size:28 final size:29
Alignment explanation
Indices: 92336968--92337025 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
92336958 TATATCGTAT
*
92336968 ATTATCCATTATATTATTTAT-GTTTTAA
1 ATTATCCATTATATTATTTATAATTTTAA
*
92336996 ATTATTCATTATATTATTTATAATTTTAA
1 ATTATCCATTATATTATTTATAATTTTAA
92337025 A
1 A
92337026 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 20 0.74
29 7 0.26
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (29 bp):
ATTATCCATTATATTATTTATAATTTTAA
Found at i:92349229 original size:23 final size:22
Alignment explanation
Indices: 92349203--92349246 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
92349193 GAGGTTTCAA
92349203 AAATCAAAAAAGAAAAAAAAAAC
1 AAAT-AAAAAAGAAAAAAAAAAC
* **
92349226 AAATAGAAAATTAAAAAAAAA
1 AAATAAAAAAGAAAAAAAAAA
92349247 TAGAGAGGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.82, C:0.05, G:0.05, T:0.09
Consensus pattern (22 bp):
AAATAAAAAAGAAAAAAAAAAC
Found at i:92350511 original size:206 final size:206
Alignment explanation
Indices: 92350143--92350658 Score: 764
Period size: 206 Copynumber: 2.5 Consensus size: 206
92350133 GCAGAACTGG
*
92350143 CTGAAGCAAGATCGAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * * *
92350208 GATTTGGTTTTCGCGTGCGTACACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTTTTAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
92350273 AGAACGAATCAAAGTTTGGCGTCTCTATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTT
130 AGAACAAATCAAAGTATGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAACCTT
* * * *
92350338 CAGATGTTTATA
195 CAAACGATTAGA
* *
92350350 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAATGAGCAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
92350415 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
92350480 GAACAAATCGAAGTATGGCATCTCCATATTCGATGGAGAGCAGACATATAGCAGATCTAACTTTC
131 GAACAAATCAAAGTATGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAACCTTC
92350545 AAACGATTAGA
196 AAACGATTAGA
* *
92350556 CTGAAGCAGATCCAAGATGATTTGGCATCATTGTGCTTACAAGGAGCAAATCGAAGACATAG-TA
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT-
* * * *
92350620 GATTTGGCTTTCACATGTTTACGCTGAAGCAAATCTAAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAG
92350659 CATCTCTGTA
Statistics
Matches: 279, Mismatches: 29, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
205 1 0.00
206 271 0.97
207 7 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTATGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCCAACCTTC
AAACGATTAGA
Found at i:92351079 original size:20 final size:21
Alignment explanation
Indices: 92351049--92351087 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
92351039 ACCCAGCAAA
*
92351049 CCCAGACTTAAACTAGACCAG
1 CCCAGACTTAAACCAGACCAG
92351070 CCCA-ACTTAAACCAGACC
1 CCCAGACTTAAACCAGACC
92351088 CAAACAGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.13
Consensus pattern (21 bp):
CCCAGACTTAAACCAGACCAG
Found at i:92352258 original size:24 final size:25
Alignment explanation
Indices: 92352204--92352255 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
92352194 TTGTTATTTT
92352204 TTATT-TTAAAAAACTATACATATA
1 TTATTATTAAAAAACTATACATATA
**
92352228 TTATTATTAAAAATACTATTTATATA
1 TTATTATTAAAAA-ACTATACATATA
92352254 TT
1 TT
92352256 TATATAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 7 0.29
26 12 0.50
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTATTAAAAAACTATACATATA
Found at i:92352334 original size:25 final size:25
Alignment explanation
Indices: 92352306--92352366 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
92352296 ATATTTATTA
*
92352306 TTTTATTATATAACATTTATTATAT
1 TTTTATTATATAACACTTATTATAT
** * *
92352331 TTTTATTATATATTACTTGTTATTT
1 TTTTATTATATAACACTTATTATAT
92352356 TTTTATTATAT
1 TTTTATTATAT
92352367 GTTATGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTATTATATAACACTTATTATAT
Found at i:92352413 original size:28 final size:29
Alignment explanation
Indices: 92352382--92352438 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
92352372 GTATATCGTG
*
92352382 TATTATCCATTATATTATTTAT-GTTTTA
1 TATTATCCATTATAATATTTATAGTTTTA
*
92352410 TATTATTCATTATAATATTTATAGTTTTA
1 TATTATCCATTATAATATTTATAGTTTTA
92352439 AAATTTGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (29 bp):
TATTATCCATTATAATATTTATAGTTTTA
Found at i:92360901 original size:80 final size:78
Alignment explanation
Indices: 92360735--92360930 Score: 191
Period size: 80 Copynumber: 2.4 Consensus size: 78
92360725 GAGAAATTGA
* * *
92360735 ATGATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGG
1 ATGATATCCGGGCTAAGCCCGAAGGC-ATTGTGC-GGAAATTATATCCGGGCTAAGACCCGAAGG
* *
92360800 CAATTGTGCTAGTGGC
64 CAATTGTGCAAAT-GC
** *
92360816 -T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAG
1 ATGATATCCGGGCTAAG-CCCGAAGGCATT-GTGCG-GAAATTATATCCGGGCTAAGACCCGAAG
*
92360879 GCATTTGTGCAAAT-C
63 GCAATTGTGCAAATGC
* * *
92360894 ATGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGG
1 ATGATATCCGGGCTAAG-CCCGAAGGCATT-GTGCGG
92360931 GTTACCATAA
Statistics
Matches: 96, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
78 1 0.01
79 20 0.21
80 75 0.78
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
ATGATATCCGGGCTAAGCCCGAAGGCATTGTGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAATGC
Found at i:92360902 original size:40 final size:39
Alignment explanation
Indices: 92360738--92360920 Score: 158
Period size: 40 Copynumber: 4.6 Consensus size: 39
92360728 AAATTGAATG
* *
92360738 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCAT
* * * *
92360777 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT--CAT
* * *
92360817 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCA-T
*
92360857 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCAT
* * *
92360896 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
92360921 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
37 4 0.03
38 3 0.03
39 16 0.13
40 96 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCAT
Found at i:92363848 original size:27 final size:27
Alignment explanation
Indices: 92363818--92363870 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
92363808 CCTGATATGA
*
92363818 AAAATTACC-AAAGTGCCCCCAGTTTGC
1 AAAATTACCGAAA-TACCCCCAGTTTGC
*
92363845 AAAATTACCGAAATACCCCTAGTTTG
1 AAAATTACCGAAATACCCCCAGTTTG
92363871 TAAGATGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCCAGTTTGC
Found at i:92366486 original size:28 final size:29
Alignment explanation
Indices: 92366432--92366574 Score: 89
Period size: 29 Copynumber: 5.0 Consensus size: 29
92366422 GCGTGAATAC
* ** *
92366432 AAGGTGATTTAGGCCTAGCGGGCCATAT-
1 AAGGTGATTTGGGCCTAATGGGACATATG
92366460 AAGGTGATTTGGGCCTAATGGGACATATG
1 AAGGTGATTTGGGCCTAATGGGACATATG
** * *
92366489 AATATGAATTGGGCTTAATGGG-C-TGAATG
1 AAGGTGATTTGGGCCTAATGGGACAT--ATG
* * * *
92366518 AATGTGAATTGGGCCTGATGGGCCATATG
1 AAGGTGATTTGGGCCTAATGGGACATATG
* * *
92366547 AATGAGA-TTGGGCC-AAGTGGGTCATATG
1 AAGGTGATTTGGGCCTAA-TGGGACATATG
92366575 CATGTATGTA
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
27 2 0.02
28 42 0.44
29 49 0.52
30 1 0.01
31 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (29 bp):
AAGGTGATTTGGGCCTAATGGGACATATG
Found at i:92366507 original size:29 final size:28
Alignment explanation
Indices: 92366468--92366574 Score: 96
Period size: 29 Copynumber: 3.7 Consensus size: 28
92366458 ATAAGGTGAT
92366468 TTGGGCCTAATGGGACATATGAATATGAA
1 TTGGGCCTAATGGG-CATATGAATATGAA
* *
92366497 TTGGGCTTAATGGGC-TGAATGAATGTGAA
1 TTGGGCCTAATGGGCAT--ATGAATATGAA
*
92366526 TTGGGCCTGATGGGCCATATG-A-ATGAGA
1 TTGGGCCTAATGGG-CATATGAATATGA-A
92366554 TTGGGCC-AAGTGGGTCATATG
1 TTGGGCCTAA-TGGG-CATATG
92366575 CATGTATGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
27 5 0.08
28 20 0.31
29 38 0.58
30 1 0.02
31 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.34, T:0.28
Consensus pattern (28 bp):
TTGGGCCTAATGGGCATATGAATATGAA
Found at i:92369020 original size:33 final size:33
Alignment explanation
Indices: 92368980--92369046 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
92368970 GAAGCTTTGA
* * *
92368980 AAGTATGTTTCAAAGGCGTGGTGTTTTGAAAGC
1 AAGTATGTTGCAAAGGCATGATGTTTTGAAAGC
92369013 AAGTATGTTGCAAAGGCATGATGTTTTGAAAGC
1 AAGTATGTTGCAAAGGCATGATGTTTTGAAAGC
92369046 A
1 A
92369047 TTTAATCTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.31
Consensus pattern (33 bp):
AAGTATGTTGCAAAGGCATGATGTTTTGAAAGC
Found at i:92369415 original size:34 final size:34
Alignment explanation
Indices: 92369377--92369453 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
92369367 AGTAACAGTC
*
92369377 CAGTAACAGT-TAGGACCTTAGCTCGA-TACAGTAT
1 CAGTAACAGTGT-GGACCTTAGC-CGATTACAGTAA
* * *
92369411 CAGTAGCAGTGTGGGCCTTAGCCTATTACAGTAA
1 CAGTAACAGTGTGGACCTTAGCCGATTACAGTAA
92369445 CAGTAACAG
1 CAGTAACAG
92369454 AAATGTAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
33 2 0.06
34 33 0.92
35 1 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTAACAGTGTGGACCTTAGCCGATTACAGTAA
Found at i:92373761 original size:20 final size:20
Alignment explanation
Indices: 92373736--92373773 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92373726 GTTTATTTGC
*
92373736 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
92373756 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
92373774 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:92405634 original size:42 final size:43
Alignment explanation
Indices: 92405574--92405720 Score: 145
Period size: 42 Copynumber: 3.5 Consensus size: 43
92405564 ATTGAGATCC
** ****
92405574 CGTATAAGACCATATCTGGGATATGGCATC-AGCATGTTGTTT
1 CGTATAAGACCATATCTGGGATATGGCATCAAAAATGAAACTT
* * *
92405616 CGTATAAGACCATGTCTGGGACATGGCTTCAAAAATGAAACTT
1 CGTATAAGACCATATCTGGGATATGGCATCAAAAATGAAACTT
* * * *
92405659 CGTATAAGACCATATCTGGGATATGGCATC-GATATGAGACAT
1 CGTATAAGACCATATCTGGGATATGGCATCAAAAATGAAACTT
* *
92405701 CGTGTAAGACCATAACTGGG
1 CGTATAAGACCATATCTGGG
92405721 TTATCAGCAT
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 53 0.62
43 33 0.38
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
CGTATAAGACCATATCTGGGATATGGCATCAAAAATGAAACTT
Done.