Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 299 of 410
Found at i:92405750 original size:43 final size:42
Alignment explanation
Indices: 92405663--92405772 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
92405653 AAACTTCGTA
* * *
92405663 TAAGACCATATCTGGGATATGGCATCGATATGAGACATCGTG
1 TAAGACCATATCTGGGATATAGCATCGATATGAGACACCATG
* * *
92405705 TAAGACCATAACTGGGTTATCAGCATCGATATGTGATC-CCATG
1 TAAGACCATATCTGGGATAT-AGCATCGATATGAGA-CACCATG
*
92405748 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATAGCAT
92405773 TGAGATCTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 22 0.39
43 34 0.60
44 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATAGCATCGATATGAGACACCATG
Found at i:92406265 original size:317 final size:315
Alignment explanation
Indices: 92405685--92406632 Score: 1566
Period size: 317 Copynumber: 3.0 Consensus size: 315
92405675 TGGGATATGG
*
92405685 CATCGATATGAGACATCGTGTAAGACCATAACTGGGTTATC-AGCATCGATATGTGATCCCATGT
1 CATCGATATGAGACATCGTGTAAGACCATAGCTGGGTTATCGA-CATCGATATGTGATCCCATGT
* *
92405749 AAGACCATATCTGGGATATGGCATTGAGATCTTACTATGTGTATTAGATTTCCCGAGTATCCTTT
65 AAGACCATATCTGGGATATGGCATTGACATCTTACTATGTGTATTAGATTTCCCAAGTATCCTTT
* * *
92405814 GGTATTCCAAGAGGTTCAACGGGTAATCCAAAGATTATGGCAAAGAAATGACAGGGTATGATCAT
130 AGTATTCCAAGAGGTTCAACGGGTAATCCAAAGATTATGTCAAAGAAATGACAAGGTATGATCAT
*
92405879 GTTGGAAAGGTACAGGTATGTCTACAAAGCTCATAAATATTGAGATTATGAATTGATGAGACCTC
195 GTTGGAAAGGTACA-GTATGTC-ACAAAGCTCATAAATATTGAGATTATGAATCGATGAGACCTC
*
92405944 GGTAAGAAGTGAATGAATGTATCATGATCATGAGTTTTATAT-TACATTATGTAAATGA
258 GGTAAGAAGTGAATGAATGTATCATGATCATGAGTTTTAT-TGTACACTATGTAAATGA
* *
92406002 CATCAATATGAGACATCGTGTAAGACCATAGCTGGGCTATCGACATCGATATGTGATCCCATGTA
1 CATCGATATGAGACATCGTGTAAGACCATAGCTGGGTTATCGACATCGATATGTGATCCCATGTA
92406067 AGACCATATCTGGGATATGGCATTGACATCTTACTATGTGTATTAGATTTCCCAAGTATCCTTTA
66 AGACCATATCTGGGATATGGCATTGACATCTTACTATGTGTATTAGATTTCCCAAGTATCCTTTA
*
92406132 GTATTCCAAGAGGTTCAACGGGTAATCCAAAGATTATGTCAAAGAAATGAAAAGGTATGATCATG
131 GTATTCCAAGAGGTTCAACGGGTAATCCAAAGATTATGTCAAAGAAATGACAAGGTATGATCATG
* *
92406197 TTGGAAAGATACATGTATGTACACAAAGCTCATAAATATTGAGATTATGAATCGATGAGTCCTCG
196 TTGGAAAGGTACA-GTATGT-CACAAAGCTCATAAATATTGAGATTATGAATCGATGAGACCTCG
92406262 GTAAGAAGTGAATGAATGTATCATGATCATGAGTTTTATTGTACACTATGTAAATGA
259 GTAAGAAGTGAATGAATGTATCATGATCATGAGTTTTATTGTACACTATGTAAATGA
* * *
92406319 CATCGATATGAGACATCGTGTAAGACCATAGTTAGGTTATCGACATTGATATGTGATCCCATGTA
1 CATCGATATGAGACATCGTGTAAGACCATAGCTGGGTTATCGACATCGATATGTGATCCCATGTA
* * * *
92406384 AGACCATATTTGGGATATGACATTGACATCTTATTATGTGTATTAGATTTCCCAGGTATCCTTTA
66 AGACCATATCTGGGATATGGCATTGACATCTTACTATGTGTATTAGATTTCCCAAGTATCCTTTA
*
92406449 GTATTCCAAGAGGTTCAACGGGTAATTCAAAGATTATGTCAAAGAAATGACAAGGTATGATCATG
131 GTATTCCAAGAGGTTCAACGGGTAATCCAAAGATTATGTCAAAGAAATGACAAGGTATGATCATG
* * * *
92406514 TTGGAAGGGTACAG---GT-ACAAAGCTTATAAATATTGAGATTATGAATCGATGAGACCTTGGC
196 TTGGAAAGGTACAGTATGTCACAAAGCTCATAAATATTGAGATTATGAATCGATGAGACCTCGGT
*
92406575 AAAAAGTGAATGAATGTATCATGATCATGAGTTTTATTGTACACTATGTAAATGA
261 AAGAAGTGAATGAATGTATCATGATCATGAGTTTTATTGTACACTATGTAAATGA
92406630 CAT
1 CAT
92406633 GATTTAAGAT
Statistics
Matches: 596, Mismatches: 32, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
311 98 0.16
313 2 0.00
316 2 0.00
317 492 0.83
318 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (315 bp):
CATCGATATGAGACATCGTGTAAGACCATAGCTGGGTTATCGACATCGATATGTGATCCCATGTA
AGACCATATCTGGGATATGGCATTGACATCTTACTATGTGTATTAGATTTCCCAAGTATCCTTTA
GTATTCCAAGAGGTTCAACGGGTAATCCAAAGATTATGTCAAAGAAATGACAAGGTATGATCATG
TTGGAAAGGTACAGTATGTCACAAAGCTCATAAATATTGAGATTATGAATCGATGAGACCTCGGT
AAGAAGTGAATGAATGTATCATGATCATGAGTTTTATTGTACACTATGTAAATGA
Found at i:92407922 original size:17 final size:17
Alignment explanation
Indices: 92407900--92407933 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
92407890 AACTAACATT
*
92407900 AAAATGCAATTACAATA
1 AAAATGCAATGACAATA
92407917 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
92407934 TGCACTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.12, G:0.09, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:92412623 original size:21 final size:21
Alignment explanation
Indices: 92412581--92412624 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
92412571 CTAATTCTGG
* *
92412581 TGTGGATGCATTTAGATTTGT
1 TGTGGATGCATTAAGATGTGT
92412602 TGTGGATGCATCTAAG-TGTGT
1 TGTGGATGCAT-TAAGATGTGT
92412623 TG
1 TG
92412625 ATTGTAGTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.18, C:0.07, G:0.32, T:0.43
Consensus pattern (21 bp):
TGTGGATGCATTAAGATGTGT
Found at i:92427068 original size:43 final size:43
Alignment explanation
Indices: 92427007--92427093 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
92426997 TCTTCATGTG
92427007 TTAGATTCATCTTGACGGGCTTTATGTCACAAATTCGTTCCCC
1 TTAGATTCATCTTGACGGGCTTTATGTCACAAATTCGTTCCCC
92427050 TTAGATTCATCTTGACGGGCTTTATGTCACAAATTCGTTCCCC
1 TTAGATTCATCTTGACGGGCTTTATGTCACAAATTCGTTCCCC
92427093 T
1 T
92427094 CCTGTAATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (43 bp):
TTAGATTCATCTTGACGGGCTTTATGTCACAAATTCGTTCCCC
Found at i:92430367 original size:21 final size:21
Alignment explanation
Indices: 92430330--92430373 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
92430320 GTAGTTTGGT
*
92430330 TAGCCATATTATAGAATAAGC
1 TAGCCATATTACAGAATAAGC
* *
92430351 TAGCCATATTACGGAATACGC
1 TAGCCATATTACAGAATAAGC
92430372 TA
1 TA
92430374 CCCAACAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (21 bp):
TAGCCATATTACAGAATAAGC
Found at i:92451920 original size:14 final size:14
Alignment explanation
Indices: 92451901--92451930 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
92451891 AAGAGAGAAT
*
92451901 GATGATGGATGAGG
1 GATGATGAATGAGG
92451915 GATGATGAATGAGG
1 GATGATGAATGAGG
92451929 GA
1 GA
92451931 ACGAAGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:92461012 original size:43 final size:43
Alignment explanation
Indices: 92460946--92461081 Score: 159
Period size: 43 Copynumber: 3.2 Consensus size: 43
92460936 AACTTGTACA
* * *
92460946 ATGCCAACATCTTAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCTAGACATGGTCTTACATGAAATCAAATATCG
* * * *
92460989 ATGCCACTATCCTAGACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAATATCCTAGACATGGTCTTACATGAAATCAAATATCG
* *
92461031 ATGCCAATGTCCCAGACATGGTCTTACATGCAAATCACAA-ATCG
1 ATGCCAATATCCTAGACATGGTCTTACATG-AAATCA-AATATCG
92461075 ATGCCAA
1 ATGCCAA
92461082 CGTCCCAGAT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 27 0.35
43 40 0.52
44 10 0.13
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATATCCTAGACATGGTCTTACATGAAATCAAATATCG
Found at i:92461087 original size:44 final size:42
Alignment explanation
Indices: 92460959--92461102 Score: 148
Period size: 44 Copynumber: 3.4 Consensus size: 42
92460949 CCAACATCTT
* * *
92460959 AGACATGGTCTTACATGTAATCAAATATCGATGCC-ACTATCCT
1 AGACATGGTCTTACATGAAATCAAA-ATCGATGCCAAC-GTCCC
* * * *
92461002 AGACAAGGTCTTACACGAAATC-ATATACGATGCCAATGTCCC
1 AGACATGGTCTTACATGAAATCAAAAT-CGATGCCAACGTCCC
92461044 AGACATGGTCTTACATGCAAATCACAAATCGATGCCAACGTCCC
1 AGACATGGTCTTACATG-AAATCA-AAATCGATGCCAACGTCCC
**
92461088 AGATGTGGTCTTACA
1 AGACATGGTCTTACA
92461103 CGATAACACA
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.31
43 25 0.30
44 27 0.33
45 3 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACATGAAATCAAAATCGATGCCAACGTCCC
Found at i:92465615 original size:2 final size:2
Alignment explanation
Indices: 92465608--92465636 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92465598 GAGACTAGTC
92465608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92465637 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92497096 original size:49 final size:48
Alignment explanation
Indices: 92497023--92497266 Score: 272
Period size: 49 Copynumber: 4.9 Consensus size: 48
92497013 AGCCGAAGCT
* * * *
92497023 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAC
*
92497071 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAC
** * * *
92497122 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCATAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCA-A--C
* * * * * *
92497173 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA-C
*
92497222 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
92497267 TCACAATAGG
Statistics
Matches: 165, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
48 3 0.02
49 80 0.48
50 41 0.25
51 41 0.25
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAC
Found at i:92501627 original size:14 final size:15
Alignment explanation
Indices: 92501587--92501625 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
92501577 TTCAAATATT
92501587 GCATATATAAATTTA
1 GCATATATAAATTTA
* *
92501602 -CATATTTCAATTTA
1 GCATATATAAATTTA
92501616 GCATATATAA
1 GCATATATAA
92501626 TTCACATTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (15 bp):
GCATATATAAATTTA
Found at i:92507234 original size:43 final size:42
Alignment explanation
Indices: 92507136--92507252 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
92507126 TAGAATTACT
* *
92507136 GAGATTATGTGTAAGACCATATCTAGGATATGGTATCGATAT
1 GAGATTATGTGTAAGACCATATCTAGGATATGATATCGATAC
* * *
92507178 GAGACTT-CGTGTAAGACCATAGT-TGGGCTATTGATATCGATAC
1 GAGA-TTATGTGTAAGACCATA-TCTAGGATA-TGATATCGATAC
* * *
92507221 GAGATTATATGTAAGATCATATCTGGGATATG
1 GAGATTATGTGTAAGACCATATCTAGGATATG
92507253 GAATTGGTAC
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (42 bp):
GAGATTATGTGTAAGACCATATCTAGGATATGATATCGATAC
Found at i:92507598 original size:14 final size:14
Alignment explanation
Indices: 92507575--92507607 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
92507565 AGCATTGAAA
92507575 GAAA-TAAACTTAT
1 GAAATTAAACTTAT
92507588 GAAATTAAACTTAT
1 GAAATTAAACTTAT
92507602 GAAATT
1 GAAATT
92507608 CTTAGTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (14 bp):
GAAATTAAACTTAT
Found at i:92509868 original size:27 final size:27
Alignment explanation
Indices: 92509801--92509912 Score: 154
Period size: 28 Copynumber: 4.1 Consensus size: 27
92509791 GGAAGCGTTA
*
92509801 TGGTGGCTATGCCATAAATATCTGTTTC
1 TGGTGGCTATGCCACAAATATCTG-TTC
92509829 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTATGCCACAAATATCTGTTC
*
92509856 TGGTGGCTCTGCCACAAATATCTGTATC
1 TGGTGGCTATGCCACAAATATCTGT-TC
* * *
92509884 TGGTGACTCTGTCAC-AATATCTGTTC
1 TGGTGGCTATGCCACAAATATCTGTTC
92509910 TGG
1 TGG
92509913 CAGCCGTGCT
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
26 5 0.06
27 36 0.46
28 38 0.48
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
TGGTGGCTATGCCACAAATATCTGTTC
Found at i:92509886 original size:55 final size:54
Alignment explanation
Indices: 92509801--92509912 Score: 161
Period size: 55 Copynumber: 2.1 Consensus size: 54
92509791 GGAAGCGTTA
* * *
92509801 TGGTGGCTATGCCATAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTC
* * *
92509856 TGGTGGCTCTGCCACAAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTC
1 TGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATGCCACAATATCTGTTC
92509910 TGG
1 TGG
92509913 CAGCCGTGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
54 14 0.27
55 37 0.73
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (54 bp):
TGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATGCCACAATATCTGTTC
Found at i:92513975 original size:48 final size:48
Alignment explanation
Indices: 92513920--92514598 Score: 1241
Period size: 48 Copynumber: 14.1 Consensus size: 48
92513910 ACACATCGCC
*
92513920 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
92513968 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
92514018 TATATATTTCACATTATCCATTCGGCTTTACCATATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
92514066 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514114 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514162 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
92514210 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514258 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
92514306 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514354 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514402 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514450 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92514498 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
92514546 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
92514594 TACAT
1 TACAT
92514599 CAATTTCCGC
Statistics
Matches: 612, Mismatches: 17, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
48 567 0.93
50 45 0.07
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:92518404 original size:28 final size:28
Alignment explanation
Indices: 92518373--92518466 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 28
92518363 AAACAGCATG
*
92518373 CAGTACCAGTCTGGGCCTTAGCCCTATA
1 CAGTACCAGTGTGGGCCTTAGCCCTATA
*
92518401 CAGTATCAGTGCAGTGTGGGCCTTAGCCTTATA
1 CAGTA-C----CAGTGTGGGCCTTAGCCCTATA
* *
92518434 CAGTATCAGTGTGGGCCTAAGCCC-AGTA
1 CAGTACCAGTGTGGGCCTTAGCCCTA-TA
92518462 CAGTA
1 CAGTA
92518467 TCGGAACAGT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
27 1 0.02
28 28 0.51
29 1 0.02
33 25 0.45
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (28 bp):
CAGTACCAGTGTGGGCCTTAGCCCTATA
Found at i:92518426 original size:33 final size:33
Alignment explanation
Indices: 92518379--92518444 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
92518369 CATGCAGTAC
92518379 CAGTCTGGGCCTTAGCCCTATACAGTATCAGTG
1 CAGTCTGGGCCTTAGCCCTATACAGTATCAGTG
* *
92518412 CAGTGTGGGCCTTAGCCTTATACAGTATCAGTG
1 CAGTCTGGGCCTTAGCCCTATACAGTATCAGTG
92518445 TGGGCCTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (33 bp):
CAGTCTGGGCCTTAGCCCTATACAGTATCAGTG
Found at i:92518659 original size:27 final size:26
Alignment explanation
Indices: 92518596--92518666 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 26
92518586 AACAAAGCTG
* *
92518596 CCAGAAACAGTAAATGTGGCAAGCCA
1 CCAGTAACAGTAAATGTGGCAAACCA
* * *
92518622 CCAGTATCAGTAATTGTGTCATAACCA
1 CCAGTAACAGTAAATGTGGCA-AACCA
*
92518649 CCAGTAACAGTGAATGTG
1 CCAGTAACAGTAAATGTG
92518667 ACATAGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 17 0.47
27 19 0.53
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
CCAGTAACAGTAAATGTGGCAAACCA
Found at i:92521900 original size:40 final size:40
Alignment explanation
Indices: 92521806--92521950 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
92521796 TACTCGAATG
* *
92521806 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
92521847 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
92521887 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
92521927 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
92521951 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 27 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:92526686 original size:17 final size:19
Alignment explanation
Indices: 92526644--92526687 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
92526634 ATGAAATTTT
*
92526644 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
92526663 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
92526681 AA-TATTA
1 AATTATTA
92526688 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:92526718 original size:12 final size:12
Alignment explanation
Indices: 92526701--92526725 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92526691 TATGTATGTT
92526701 TGAAAATTTTTA
1 TGAAAATTTTTA
92526713 TGAAAATTTTTA
1 TGAAAATTTTTA
92526725 T
1 T
92526726 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:92528512 original size:28 final size:28
Alignment explanation
Indices: 92528480--92528548 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
92528470 GCGTAGATCA
92528480 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
92528508 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
92528536 CGATA-TACCCCTA
1 CGAAATTACCCCTA
92528549 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:92530414 original size:50 final size:49
Alignment explanation
Indices: 92530327--92530614 Score: 312
Period size: 50 Copynumber: 5.8 Consensus size: 49
92530317 AATGACCCAT
* *
92530327 TGTGA-GTACACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCATA
1 TGTGAGGT-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
* * * * * *
92530376 CTGTTAAGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-A
1 -TGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGA
** * **
92530426 TGACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA
1 TG--TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
**
92530477 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA
1 T-GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
*
92530527 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGA
1 T-GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
* * *
92530577 T-TGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TGTG-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
92530615 TGCGTATCAG
Statistics
Matches: 207, Mismatches: 24, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
48 2 0.01
49 33 0.16
50 130 0.63
51 41 0.20
52 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
Found at i:92530510 original size:101 final size:98
Alignment explanation
Indices: 92530335--92530626 Score: 370
Period size: 101 Copynumber: 2.9 Consensus size: 98
92530325 ATTGTGAGTA
* * *
92530335 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG-TAGGTCGCATGTGTAGTACT
**
92530400 AAGTGCAGGCTACTATGCGTACTCA-ATGACTTCGAT
64 AAGTGCAGGCTACTATGCGTA-TCAGATG-CTGAGAT
** * *
92530436 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GT-AGGTCGCATGTGTAGTACT
* * * * *
92530501 AAGTGCAGGCTACTACGTGTATTAGATGGTGAGGT
64 AAGTGCAGGCTACTATGCGTATCAGATGCTGAGAT
* *
92530536 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTAGGTCGCATGTGTAGTACTA
92530601 AGTGCAGGCTACTATGCGTATCAGAT
65 AGTGCAGGCTACTATGCGTATCAGAT
92530627 AGCTTCGGCT
Statistics
Matches: 164, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
99 40 0.24
100 47 0.29
101 77 0.47
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTAGGTCGCATGTGTAGTACTAA
GTGCAGGCTACTATGCGTATCAGATGCTGAGAT
Found at i:92537940 original size:50 final size:50
Alignment explanation
Indices: 92537865--92538090 Score: 253
Period size: 50 Copynumber: 4.5 Consensus size: 50
92537855 TGAGTACACG
* *
92537865 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** *
92537915 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * *
92537966 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * *
92538016 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
92538065 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
92538091 TGCGTATCAG
Statistics
Matches: 151, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 33 0.22
50 74 0.49
51 35 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:92538036 original size:101 final size:97
Alignment explanation
Indices: 92537861--92538102 Score: 288
Period size: 101 Copynumber: 2.4 Consensus size: 97
92537851 ATTGTGAGTA
* * * *
92537861 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
*
92537926 AAGTGCAGGCTACTATGCGTACTC-AATGACTTCGAT
65 AAGTGCAGGCTACTACGCGTAC-CGAATG--TT-GAT
* *
92537962 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTGAAGTCACATGTGTAGTACT
* * *
92538027 AAGTGCAGGCTACTACGTGTACCGGATTGTTGGT
65 AAGTGCAGGCTACTACGCGTACC-GAATGTTGAT
* * * *
92538061 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
92538103 AGCTTCGGCT
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
99 40 0.32
100 4 0.03
101 77 0.62
102 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (97 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCGAATGTTGAT
Found at i:92540456 original size:12 final size:12
Alignment explanation
Indices: 92540441--92540473 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
92540431 ATATATAATG
92540441 TATAATAAAATT
1 TATAATAAAATT
92540453 TATAAATAAAATT
1 TAT-AATAAAATT
92540466 TATAATAA
1 TATAATAA
92540474 TATAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TATAATAAAATT
Found at i:92540486 original size:17 final size:17
Alignment explanation
Indices: 92540466--92540500 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
92540456 AAATAAAATT
*
92540466 TATAATAATATAAATAA
1 TATAATAATAAAAATAA
92540483 TATAATAATAAAAATAA
1 TATAATAATAAAAATAA
92540500 T
1 T
92540501 TTGATATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TATAATAATAAAAATAA
Found at i:92547452 original size:47 final size:47
Alignment explanation
Indices: 92547401--92547511 Score: 195
Period size: 47 Copynumber: 2.4 Consensus size: 47
92547391 TAGTATTAAT
*
92547401 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
92547448 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
92547495 AATGTGATAAGTCCGAA
1 TATGTGATAAGGCCGAA
92547512 GGGCATTTGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:92549541 original size:38 final size:38
Alignment explanation
Indices: 92549439--92549543 Score: 115
Period size: 38 Copynumber: 2.8 Consensus size: 38
92549429 AATCCGAGTT
* * * *
92549439 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
* *
92549477 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGA
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
*
92549515 TTAAGACCC-ACTGGCT-TCATATAGAGATT
1 TAAAGACCCGA-TGGCTAT-ATATAGAGATT
92549544 TCATCCGAGC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
37 2 0.04
38 54 0.96
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
Found at i:92549629 original size:40 final size:40
Alignment explanation
Indices: 92549574--92549886 Score: 545
Period size: 40 Copynumber: 7.8 Consensus size: 40
92549564 GACGATGATT
* *
92549574 CGGGCTAAGTCCCGAAGGGCATTCGTGCCAGTGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
92549614 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
*
92549654 CGGGCTGAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
*
92549694 CGGGCTAAATCCCGAAGGGCATTCGTGCCGATGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
92549734 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
* *
92549774 CGGGCTAAATCCCAAAGGGTATTCGTGCCGGTGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
* *
92549814 CGGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTATATC
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
*
92549854 CGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
92549887 ATGTGTATTC
Statistics
Matches: 260, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (40 bp):
CGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATC
Found at i:92558001 original size:47 final size:47
Alignment explanation
Indices: 92557950--92558054 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
92557940 TAGTATTAAT
*
92557950 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
92557997 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
92558044 AATGTGATAAG
1 TATGTGATAAG
92558055 TCGAAGGGCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:92563874 original size:29 final size:29
Alignment explanation
Indices: 92563834--92563907 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
92563824 TGATTTAAGC
* *
92563834 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACAGTCCAAACT
* * *
92563863 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACAGTCCAAACT
*
92563892 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
92563908 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACAGTCCAAACT
Found at i:92571855 original size:29 final size:28
Alignment explanation
Indices: 92571823--92571894 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
92571813 TTTAAGCCCA
*
92571823 CACACATAGTGCCATATAGTCCAAACTCG
1 CACAC-TAGTGCCATACAGTCCAAACTCG
* * *
92571852 CACACTTAGTGCCATACATTTCAAGCTCG
1 CACAC-TAGTGCCATACAGTCCAAACTCG
92571881 CACACTCAGTGCCA
1 CACACT-AGTGCCA
92571895 ATCTCGTCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.31, C:0.33, G:0.14, T:0.22
Consensus pattern (28 bp):
CACACTAGTGCCATACAGTCCAAACTCG
Found at i:92577580 original size:44 final size:44
Alignment explanation
Indices: 92577527--92578412 Score: 1066
Period size: 44 Copynumber: 20.3 Consensus size: 44
92577517 AGATGACATC
* *
92577527 TGGCATCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAAATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92577571 TGGTATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92577615 TGGTATCTCTGTATTGTCAGAGAACAGATCAAAGATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92577659 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAATATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92577703 TGGCGTCTCTGTATTGTCAAAGAGCAGATCAAATATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * * *
92577747 TGGCATCTCTGTAGTGACAGAGAGTAGATCGAAGAT-G-ACATC
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
** * *
92577789 TGGCATCTCTGTATTAACAGAGAGCAGACCAAAGATAGAAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
92577833 TGGCATCTCTGTATTGTCAGAGAGAAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92577877 TGGTATCTCTGTATTGTTAGAGAACAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * *
92577921 TGACATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAAATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * *
92577965 TGGCGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * ** * *
92578009 TGGCATCTCTGTAGTGACAGAGAGTAGATTGAAGAT-G-ACATC
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* *
92578051 TGGCATCTCTGTATTGACGGAGAGCAGAT-AGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCA-AAGATAGCAGATT
* * * * * *
92578095 TGGCATCTCTGTAGTGACAGAGAGTAGATCGAAGAT-G-ACATC
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
** * * *
92578137 TGGCATCTCTGTATTAACGGAGAGCAGATCGAAGATAACAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92578181 TGGCATCTCTGTATTGTCAAAGAGCATATCAAAGATAGTAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
92578225 TGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
92578269 TGGCATCTCTGTATTGTTAGAGAGCAGATCAAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * *
92578313 TGGTATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
* * * * * * *
92578357 TGGCGTCTTTGTATTATTAGAGAGCAGATCGAGGATAGCTGATT
1 TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
*
92578401 TGACATCTCTGT
1 TGGCATCTCTGT
92578413 GTTGGTGGAG
Statistics
Matches: 723, Mismatches: 111, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
42 103 0.14
43 5 0.01
44 615 0.85
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (44 bp):
TGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATT
Found at i:92577980 original size:262 final size:262
Alignment explanation
Indices: 92577508--92578412 Score: 1208
Period size: 262 Copynumber: 3.5 Consensus size: 262
92577498 AGGGGATAAT
* *
92577508 GTAGATC-ACAGATGACATCTGGCATCTCTGTATTGTCAAAGAGCAGATCAAAGATAGCAA-ATT
1 GTAGATCGA-AGATGACATCTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAG-AAGATT
* * *
92577571 TGGTATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATTTGGTATCTCTGTATTGTCAGA
64 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
92577636 GAACAGATCAAAGATAGTAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAATATAGTAGA
129 GAACAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGA
* *
92577701 TTTGGCGTCTCTGTATTGTCAAAGAGCAGATCAAATATAGCAGATTTGGCATCTCTGTAGTGACA
194 TTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACA
92577766 GAGA
259 GAGA
* *
92577770 GTAGATCGAAGATGACATCTGGCATCTCTGTATTAACAGAGAGCAGACCAAAGATAGAAGATTTG
1 GTAGATCGAAGATGACATCTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAGAAGATTTG
* * * *
92577835 GCATCTCTGTATTGTCAGAGAGAAGATCAAAGATAGCAGATTTGGTATCTCTGTATTGTTAGAGA
66 GCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
* ** *
92577900 ACAGATCAAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAAATT
131 ACAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATT
* * *
92577965 TGGCGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTAGTGACAGA
196 TGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACAGA
92578030 GA
261 GA
* * *
92578032 GTAGATTGAAGATGACATCTGGCATCTCTGTATTGACGGAGAGCAGAT-AGAAGATAGCAGATTT
1 GTAGATCGAAGATGACATCTGGCATCTCTGTATTGACAGAGAGCAGATCA-AAGATAGAAGATTT
* * * * * ** *
92578096 GGCATCTCTGTAGTGACAGAGAGTAGATCGAAGAT-G-ACATCTGGCATCTCTGTATTAACGGAG
65 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* * * * * *
92578159 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGTCAAAGAGCATATCAAAGATAGTAGAT
130 AACAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGAT
* **
92578224 TTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTTAG
195 TTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACAG
92578289 AGA
260 AGA
* * * * * * * * *
92578292 GCAGATCAAAGATAGCAGATTTGGTATCTCTATATTGTCAGAGAGCAGATCGAAGATAGCAGATT
1 GTAGATCGAAGAT-G-ACATCTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAGAAGATT
* * * * * * *
92578357 TGGCGTCTTTGTATTATTAGAGAGCAGATCGAGGATAGCTGATTTGACATCTCTGT
64 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT
92578413 GTTGGTGGAG
Statistics
Matches: 561, Mismatches: 74, Indels: 14
0.86 0.11 0.02
Matches are distributed among these distances:
260 147 0.26
261 5 0.01
262 394 0.70
263 2 0.00
264 13 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (262 bp):
GTAGATCGAAGATGACATCTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAGAAGATTTG
GCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGA
ACAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGTAGATT
TGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTAGTGACAGA
GA
Found at i:92580028 original size:12 final size:12
Alignment explanation
Indices: 92580013--92580048 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
92580003 ATTATTTATA
92580013 TTATTATACATT
1 TTATTATACATT
*
92580025 TTATTTATAAATT
1 TTA-TTATACATT
92580038 TTATTATACAT
1 TTATTATACAT
92580049 CATATTTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATACATT
Found at i:92580194 original size:28 final size:27
Alignment explanation
Indices: 92580146--92580198 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
92580136 TTTCTTAATT
*
92580146 ATTATTAAATAATATATATATATATATC
1 ATTATTAAATAATATACATAT-TATATC
92580174 ATTATTAAATAAT-TAGCATATTATA
1 ATTATTAAATAATATA-CATATTATA
92580199 CAAAGTTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (27 bp):
ATTATTAAATAATATACATATTATATC
Found at i:92582972 original size:43 final size:42
Alignment explanation
Indices: 92582874--92582991 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
92582864 TTAGGATTAC
* *
92582874 TGAGATTATGTGTAAGACCATATCTGGGATATGACATCGACA
1 TGAGATTATATGTAAGACCATAGCTGGGATATGACATCGACA
* * * *
92582916 TGAGACTT-CATGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTATATGTAAGACCATAGCTGGGATA-TGACATCGACA
* *
92582959 TGAGATTATATGTAAGACCATATCTAGGATATG
1 TGAGATTATATGTAAGACCATAGCTGGGATATG
92582992 GCATTGGTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGATTATATGTAAGACCATAGCTGGGATATGACATCGACA
Found at i:92584620 original size:3 final size:3
Alignment explanation
Indices: 92584612--92584717 Score: 126
Period size: 3 Copynumber: 35.3 Consensus size: 3
92584602 CAATAACAAG
*
92584612 AAT AAT AAT -GT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
92584657 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT -AT AAGT AAC AAC CAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
92584702 AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT A
92584718 TTGAAATGAA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
2 3 0.03
3 83 0.91
4 5 0.05
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:92597584 original size:12 final size:12
Alignment explanation
Indices: 92597567--92597591 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92597557 GACACCGTAG
92597567 CTAGGGTTTGTT
1 CTAGGGTTTGTT
92597579 CTAGGGTTTGTT
1 CTAGGGTTTGTT
92597591 C
1 C
92597592 AACATTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.12, G:0.32, T:0.48
Consensus pattern (12 bp):
CTAGGGTTTGTT
Found at i:92599910 original size:39 final size:40
Alignment explanation
Indices: 92599806--92599972 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
92599796 CAATTGAATG
* *
92599806 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCG--TT
* * *
92599847 -TGTCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
* *
92599886 ATATCCGGGCTAATA-CCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
* *
92599925 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
92599965 ATATCCGG
1 ATATCCGG
92599973 TTGTATTCGA
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 40 0.36
40 69 0.63
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
Found at i:92599938 original size:79 final size:79
Alignment explanation
Indices: 92599806--92599972 Score: 221
Period size: 79 Copynumber: 2.1 Consensus size: 79
92599796 CAATTGAATG
* * *
92599806 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTGTCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
92599871 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
92599886 ATATCCGGGCTAATA-CCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
92599949 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
92599965 ATATCCGG
1 ATATCCGG
92599973 TTGTATTCGA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
78 2 0.03
79 61 0.79
80 14 0.18
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:92607703 original size:40 final size:40
Alignment explanation
Indices: 92607647--92607814 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
92607637 CAATTGAATG
* *
92607647 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
92607688 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
92607727 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
92607767 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
92607807 ATATCCGG
1 ATATCCGG
92607815 TTGTATCCGA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:92607780 original size:80 final size:79
Alignment explanation
Indices: 92607647--92607814 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
92607637 CAATTGAATG
* *
92607647 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
92607712 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
92607727 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
92607791 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
92607807 ATATCCGG
1 ATATCCGG
92607815 TTGTATCCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:92609342 original size:14 final size:14
Alignment explanation
Indices: 92609323--92609349 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92609313 CTATGTTTAT
92609323 TATGTGTGAAATTA
1 TATGTGTGAAATTA
92609337 TATGTGTGAAATT
1 TATGTGTGAAATT
92609350 TCCGTGCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TATGTGTGAAATTA
Found at i:92610091 original size:8 final size:9
Alignment explanation
Indices: 92610067--92610092 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
92610057 GGGACTAAAT
92610067 TGTAAAAAG
1 TGTAAAAAG
92610076 TGTAAAAAG
1 TGTAAAAAG
92610085 TGTAAAAA
1 TGTAAAAA
92610093 TGTTAGGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.23
Consensus pattern (9 bp):
TGTAAAAAG
Found at i:92610553 original size:41 final size:44
Alignment explanation
Indices: 92610461--92610615 Score: 181
Period size: 45 Copynumber: 3.5 Consensus size: 44
92610451 GATATGTGTT
* * * *
92610461 ACGTCTGGGACATTGGCATTGATATATGTGGTTACGTGTAATACC
1 ACGTCTGGGACATCGGCA-TCATATATGTGATTACGTGTAAGACC
*
92610506 ATGTCTGGGACATCGGCATCATAT-T-TGATT-CGTGTAAGACC
1 ACGTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACC
* * * *
92610547 ACGTCTGGGATATTGGCATCGATATATGTGCTTACGTGTAAGACT
1 ACGTCTGGGACATCGGCATC-ATATATGTGATTACGTGTAAGACC
*
92610592 ATGTCTGGGACATCGGCATCATAT
1 ACGTCTGGGACATCGGCATCATAT
92610616 TTGATTCATC
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 27 0.29
42 8 0.09
43 2 0.02
44 13 0.14
45 43 0.46
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
ACGTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACC
Found at i:92610598 original size:45 final size:44
Alignment explanation
Indices: 92610463--92610656 Score: 188
Period size: 41 Copynumber: 4.5 Consensus size: 44
92610453 TATGTGTTAC
* * * *
92610463 GTCTGGGACATTGGCATTGATATATGTGGTTACGTGTAATACCAT
1 GTCTGGGACATCGGCA-TCATATATGTGATTACGTGTAAGACCAT
*
92610508 GTCTGGGACATCGGCATCATAT-T-TGATT-CGTGTAAGACCAC
1 GTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACCAT
* * * *
92610549 GTCTGGGATATTGGCATCGATATATGTGCTTACGTGTAAGACTAT
1 GTCTGGGACATCGGCATC-ATATATGTGATTACGTGTAAGACCAT
* * *
92610594 GTCTGGGACATCGGCATCATAT-T-TGATT-CATCTAAGACCCT
1 GTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACCAT
92610635 GT-TGGGACAGT-GGCATCGATAT
1 GTCTGGGACA-TCGGCATC-ATAT
92610657 GAGACAGCAT
Statistics
Matches: 126, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
40 13 0.10
41 43 0.34
42 12 0.10
43 3 0.02
44 13 0.10
45 42 0.33
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
GTCTGGGACATCGGCATCATATATGTGATTACGTGTAAGACCAT
Found at i:92610606 original size:86 final size:86
Alignment explanation
Indices: 92610461--92610656 Score: 297
Period size: 86 Copynumber: 2.3 Consensus size: 86
92610451 GATATGTGTT
* * *
92610461 ACGTCTGGGACATTGGCATTGATATATGTGGTTACGTGTAATACCATGTCTGGGACATCGGCATC
1 ACGTCTGGGACATTGGCATCGATATATGTGCTTACGTGTAAGACCATGTCTGGGACATCGGCATC
* *
92610526 ATATTTGATTCGTGTAAGACC
66 ATATTTGATTCATCTAAGACC
* *
92610547 ACGTCTGGGATATTGGCATCGATATATGTGCTTACGTGTAAGACTATGTCTGGGACATCGGCATC
1 ACGTCTGGGACATTGGCATCGATATATGTGCTTACGTGTAAGACCATGTCTGGGACATCGGCATC
92610612 ATATTTGATTCATCTAAGACC
66 ATATTTGATTCATCTAAGACC
*
92610633 -CTGT-TGGGACAGTGGCATCGATAT
1 AC-GTCTGGGACATTGGCATCGATAT
92610657 GAGACAGCAT
Statistics
Matches: 100, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
85 19 0.19
86 81 0.81
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (86 bp):
ACGTCTGGGACATTGGCATCGATATATGTGCTTACGTGTAAGACCATGTCTGGGACATCGGCATC
ATATTTGATTCATCTAAGACC
Found at i:92620246 original size:11 final size:11
Alignment explanation
Indices: 92620230--92620254 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92620220 ATTTTGAGAT
92620230 ACTACTATATA
1 ACTACTATATA
92620241 ACTACTATATA
1 ACTACTATATA
92620252 ACT
1 ACT
92620255 TGAGACTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (11 bp):
ACTACTATATA
Found at i:92626870 original size:15 final size:15
Alignment explanation
Indices: 92626838--92626866 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
92626828 ATTTTCTATG
92626838 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
92626853 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
92626867 ATTTTCACGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:92628029 original size:45 final size:42
Alignment explanation
Indices: 92627980--92628222 Score: 188
Period size: 45 Copynumber: 5.7 Consensus size: 42
92627970 TGTGTTTTCA
* * *
92627980 TGTAAGACCGCATCTGGGACGTTGGCATCGATATATGTGGTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATAT-T-TGATT-CG
* * * * *
92628025 TGTAAGACCATGTCTGGGACATCGACATCG-TATTTGATTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTCG
* * *
92628066 TGTAATACCACGTCTGGGACGTTGGCATCGATATATGTGGTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATAT-T-TGATT-CG
* * *
92628111 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTCG
* ** * *
92628152 TGTAAGACC-CTATCTGGGACAG-TGGCATCGATATGAGATAGCA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGAT-TCG
* *
92628195 TGTAAGACCACATCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
92628223 TGTTCGATAT
Statistics
Matches: 159, Mismatches: 29, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
41 51 0.32
42 18 0.11
43 27 0.17
44 11 0.07
45 52 0.33
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTCG
Found at i:92628081 original size:41 final size:41
Alignment explanation
Indices: 92628024--92628181 Score: 183
Period size: 41 Copynumber: 3.8 Consensus size: 41
92628014 ATGTGGTTAC
*
92628024 GTGTAAGACCATGTCTGGGACATCGACATCGTATTTGATTT
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTT
* * * * *
92628065 GTGTAATACCACGTCTGGGACGTTGGCATCGATATATGTGGTTAT
1 GTGTAAGACCATGTCTGGGACATCGGCATCG-TAT-T-TGATT-T
*
92628110 GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTT
* *
92628151 GTGTAAGACCCTATCTGGGACAGT-GGCATCG
1 GTGTAAGACCATGTCTGGGACA-TCGGCATCG
92628182 ATATGAGATA
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
41 53 0.54
42 8 0.08
43 2 0.02
44 7 0.07
45 28 0.29
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTT
Found at i:92628125 original size:86 final size:86
Alignment explanation
Indices: 92627980--92628185 Score: 319
Period size: 86 Copynumber: 2.4 Consensus size: 86
92627970 TGTGTTTTCA
92627980 TGTAAGACCGC-ATCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTGGGA
1 TGTAAGACC-CTATCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTGGGA
*
92628044 CATCGACATCGTATTTGATTTG
65 CATCGACATCGTATTTGATTCG
* * *
92628066 TGTAATACCAC-GTCTGGGACGTTGGCATCGATATATGTGGTTATGTGTAAGACCATGTCTGGGA
1 TGTAAGACC-CTATCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTGGGA
*
92628130 CATCGGCATCGTATTTGATTCG
65 CATCGACATCGTATTTGATTCG
92628152 TGTAAGACCCTATCTGGGACAG-TGGCATCGATAT
1 TGTAAGACCCTATCTGGGAC-GTTGGCATCGATAT
92628186 GAGATAGCAT
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
85 1 0.01
86 108 0.98
87 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (86 bp):
TGTAAGACCCTATCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTGGGAC
ATCGACATCGTATTTGATTCG
Found at i:92629283 original size:6 final size:6
Alignment explanation
Indices: 92629272--92629296 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92629262 ATTCGGCAAT
92629272 TGTATA TGTATA TGTATA TGTATA T
1 TGTATA TGTATA TGTATA TGTATA T
92629297 TAATTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:92635129 original size:30 final size:30
Alignment explanation
Indices: 92635093--92635193 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
92635083 GACAAGATTG
* * *
92635093 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
92635123 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
92635151 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
92635180 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92635194 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:92635205 original size:29 final size:28
Alignment explanation
Indices: 92635122--92635197 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
92635112 AAAATTGTAC
* *
92635122 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
92635150 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
92635179 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
92635198 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:92643016 original size:30 final size:30
Alignment explanation
Indices: 92642980--92643080 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
92642970 GACAAGATTG
* * *
92642980 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
92643010 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
92643038 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
92643067 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92643081 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:92643092 original size:29 final size:28
Alignment explanation
Indices: 92643009--92643084 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
92642999 AAAATTGTAC
* *
92643009 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
92643037 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
92643066 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
92643085 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:92655372 original size:40 final size:40
Alignment explanation
Indices: 92655306--92655449 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
92655296 AAATTGAATG
* * *
92655306 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
92655345 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * **
92655385 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
92655425 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
92655450 TTTGTGCACA
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 16 0.18
40 73 0.82
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:92655472 original size:40 final size:40
Alignment explanation
Indices: 92655344--92655456 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
92655334 TGCTGGAAAT
* * * *
92655344 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAC
* *
92655384 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAC
*
92655424 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGC
92655457 ACATGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAC
Found at i:92660881 original size:24 final size:24
Alignment explanation
Indices: 92660854--92660901 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
92660844 CGCATCCTCC
* *
92660854 TCTTCCTCTTCGCTCTC-ATGTGTT
1 TCTTCCTATT-GCTCCCAATGTGTT
92660878 TCTTCCTATTGCTCCCAATGTGTT
1 TCTTCCTATTGCTCCCAATGTGTT
92660902 GGCCTAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.08, C:0.31, G:0.12, T:0.48
Consensus pattern (24 bp):
TCTTCCTATTGCTCCCAATGTGTT
Found at i:92666575 original size:47 final size:47
Alignment explanation
Indices: 92666520--92666650 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
92666510 TACAATTAAC
* * *
92666520 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
* * *
92666567 GAGTACCTATCCCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
* * *
92666614 AAATACCTATATCATAGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
92666651 TTATTTGCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
Found at i:92670115 original size:22 final size:21
Alignment explanation
Indices: 92670051--92670134 Score: 96
Period size: 23 Copynumber: 3.8 Consensus size: 21
92670041 CATAGCTCGT
*
92670051 AAGAGCTTACTATTTCAGCTCA
1 AAGAGCTTACT-GTTCAGCTCA
**
92670073 TTGAAGCTTACTGATTCAGCTCGA
1 AAG-AGCTTACTG-TTCAGCTC-A
92670097 AAGAGCTTACTGTTCAGCTCA
1 AAGAGCTTACTGTTCAGCTCA
92670118 ATAGAGCTTACTGTTCA
1 A-AGAGCTTACTGTTCA
92670135 TCAGCTCAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
21 2 0.04
22 24 0.45
23 25 0.47
24 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (21 bp):
AAGAGCTTACTGTTCAGCTCA
Found at i:92671614 original size:41 final size:41
Alignment explanation
Indices: 92671569--92671650 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
92671559 TGGATATATG
92671569 ATTGTTTTGAATTGAGTTACAAGTCCGGTAATGCCTCTTAA
1 ATTGTTTTGAATTGAGTTACAAGTCCGGTAATGCCTCTTAA
92671610 ATTGTTTTGAATTGAGTTACAAGTCCGGTAATGCCTCTTAA
1 ATTGTTTTGAATTGAGTTACAAGTCCGGTAATGCCTCTTAA
92671651 CCTATTCTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (41 bp):
ATTGTTTTGAATTGAGTTACAAGTCCGGTAATGCCTCTTAA
Found at i:92673566 original size:91 final size:91
Alignment explanation
Indices: 92673350--92673651 Score: 360
Period size: 91 Copynumber: 3.3 Consensus size: 91
92673340 TTATGAAAGC
* * ** * *
92673350 CAGTGTAAGACTATGTCTGGGACATGCAT-AGGCCACATTATGA-AAGCCAGTGTAAGACTATGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCA-GCCTCAAGAT-ATAAGCTAGTGTAAGAC-GTGT
* * *
92673413 CTGGGACATGGCATCGGCAATGAGA-AGAGAG
63 CTGGGACAT-GCATCGGCTATGAGATA-TG-T
92673444 CTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCAAGATATAAGCTAGTGTAAGACGTGTCT
1 C-AGTGTAAGACCATGTCTGGGACATGCATCAGCCTCAAGATATAAGCTAGTGTAAGACGTGTCT
* *
92673508 GGGACATGCATCTGCTACGAGATATGT
65 GGGACATGCATCGGCTATGAGATATGT
* * * * *
92673535 CAGTGTAAGACCATGTCTAGGACATGCATCAGCCTCGAGATGTAAGCTAGTGTAAGACGTGTTTA
1 CAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCAAGATATAAGCTAGTGTAAGACGTGTCTG
*
92673600 GGACATGCATCGGCTATGAGATGTGT
66 GGACATGCATCGGCTATGAGATATGT
92673626 CAGTGTAAGACCATGTCTGGGACATG
1 CAGTGTAAGACCATGTCTGGGACATG
92673652 GTATCGGCAC
Statistics
Matches: 183, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
90 9 0.05
91 98 0.54
92 13 0.07
93 14 0.08
94 39 0.21
95 10 0.05
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (91 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCAAGATATAAGCTAGTGTAAGACGTGTCTG
GGACATGCATCGGCTATGAGATATGT
Found at i:92673621 original size:46 final size:46
Alignment explanation
Indices: 92673302--92673709 Score: 293
Period size: 47 Copynumber: 8.7 Consensus size: 46
92673292 ATATTTGTGT
* * * * *
92673302 GCTAGTGTAAGACATGTTTGGGACATGCATAGGCCAC-ATTATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGTAA
* * * * *
92673348 GCCAGTGTAAGACTATGTCTGGGACATGCATAGGCCAC-ATTATGAAA
1 GCTAGTGTAAGAC-ATGTCTGGGACATGCATCGGCTACGA-GATGTAA
* * * *
92673395 GCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCAATGAGAAG-AGA
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTACGAGATGTA-A
* * *
92673443 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CAAGATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATGTAA
* * *
92673489 GCTAGTGTAAGACGTGTCTGGGACATGCATCTGCTACGAGA--TAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAA
* *
92673533 G-TCAGTGTAAGACCATGTCTAGGACATGCATCAGCCT-CGAGATGTAA
1 GCT-AGTGTAAGA-CATGTCTGGGACATGCATC-GGCTACGAGATGTAA
* * * *
92673580 GCTAGTGTAAGACGTGTTTAGGACATGCATCGGCTATGAGATGT--
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAA
* *
92673624 G-TCAGTGTAAGACCATGTCTGGGACATGGTATCGGC-ACG-GATACGGGAGA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGAT---GTA-A
*
92673674 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
92673710 GTCAATTTCG
Statistics
Matches: 302, Mismatches: 36, Indels: 44
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.01
44 25 0.08
45 40 0.13
46 88 0.29
47 89 0.29
48 24 0.08
49 1 0.00
50 32 0.11
51 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTAA
Found at i:92681063 original size:21 final size:21
Alignment explanation
Indices: 92681022--92681065 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
92681012 ACGACCTAAT
*
92681022 TAAATAAAAAGGATAATTAAA
1 TAAATAAAAAGGATAAATAAA
*
92681043 TAAAT-AAAATGATACAATAAA
1 TAAATAAAAAGGATA-AATAAA
92681064 TA
1 TA
92681066 CTAAAGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (21 bp):
TAAATAAAAAGGATAAATAAA
Found at i:92691621 original size:56 final size:56
Alignment explanation
Indices: 92691564--92691827 Score: 343
Period size: 56 Copynumber: 4.7 Consensus size: 56
92691554 CATACAGGGT
* * * *
92691564 CTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGT
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
92691620 CTTACTCGCACACATATATCAGAGTCACATATCGTTGCCAATGT-TTGAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATT-AAACGTGGA
* ** * * *
92691676 CTTACTCGCACATATATATTGGAATCATATATCGATGTCAACGTATTAAATC-TGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAA-CGTGGA
* * *
92691732 CTTACTCGCACACTTATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
92691788 CTTACTCACACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCA
92691828 GATATACATC
Statistics
Matches: 178, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
55 3 0.02
56 172 0.97
57 3 0.02
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:92691736 original size:112 final size:112
Alignment explanation
Indices: 92691564--92691827 Score: 411
Period size: 112 Copynumber: 2.4 Consensus size: 112
92691554 CATACAGGGT
* * * *
92691564 CTTACTCGTACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGC
1 CTTACTCGCACATATATATCAGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
* *
92691629 ACACATATATCAGAGTCACATATCGTTGCCAATGTTTGAAACGTGGA
66 ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
** * *
92691676 CTTACTCGCACATATATATTGGAATCATATATCGATGTCAACGTATTAAATCTGGACTTACTCGC
1 CTTACTCGCACATATATATCAGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
*
92691741 ACACTTATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
66 ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
* *
92691788 CTTACTCACACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACATATATATCAGAATCACATATCGATGCCA
92691828 GATATACATC
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 135 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (112 bp):
CTTACTCGCACATATATATCAGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
Found at i:92702275 original size:24 final size:24
Alignment explanation
Indices: 92702241--92702315 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
92702231 ATGAATTGGC
92702241 AAAAGCTGAAATACCGAAATGCCG
1 AAAAGCTGAAATACCGAAATGCCG
* * *
92702265 AAAAGCCGAAA-AGCCGAAAAGCTG
1 AAAAGCTGAAATA-CCGAAATGCCG
* *
92702289 AAAAGCTGAAATGCCGAAATGTCG
1 AAAAGCTGAAATACCGAAATGCCG
92702313 AAA
1 AAA
92702316 GTTGGGCTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.48, C:0.19, G:0.23, T:0.11
Consensus pattern (24 bp):
AAAAGCTGAAATACCGAAATGCCG
Found at i:92702309 original size:8 final size:8
Alignment explanation
Indices: 92702241--92702307 Score: 73
Period size: 8 Copynumber: 8.4 Consensus size: 8
92702231 ATGAATTGGC
*
92702241 AAAAGCTG
1 AAAAGCCG
92702249 AAATA-CCG
1 AAA-AGCCG
*
92702257 AAATGCCG
1 AAAAGCCG
92702265 AAAAGCCG
1 AAAAGCCG
92702273 AAAAGCCG
1 AAAAGCCG
*
92702281 AAAAGCTG
1 AAAAGCCG
*
92702289 AAAAGCTG
1 AAAAGCCG
*
92702297 AAATGCCG
1 AAAAGCCG
92702305 AAA
1 AAA
92702308 TGTCGAAAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
8 50 0.98
9 1 0.02
ACGTcount: A:0.49, C:0.19, G:0.22, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:92702314 original size:8 final size:8
Alignment explanation
Indices: 92702248--92702315 Score: 64
Period size: 8 Copynumber: 8.5 Consensus size: 8
92702238 GGCAAAAGCT
*
92702248 GAAATACC
1 GAAATGCC
92702256 GAAATGCC
1 GAAATGCC
*
92702264 GAAAAGCC
1 GAAATGCC
*
92702272 GAAAAGCC
1 GAAATGCC
* *
92702280 GAAAAGCT
1 GAAATGCC
* *
92702288 GAAAAGCT
1 GAAATGCC
92702296 GAAATGCC
1 GAAATGCC
*
92702304 GAAATGTC
1 GAAATGCC
92702312 GAAA
1 GAAA
92702316 GTTGGGCTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 54 1.00
ACGTcount: A:0.47, C:0.19, G:0.24, T:0.10
Consensus pattern (8 bp):
GAAATGCC
Found at i:92702437 original size:10 final size:9
Alignment explanation
Indices: 92702418--92702457 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
92702408 GTTGAGAATT
92702418 GGCCAAATG
1 GGCCAAATG
92702427 GGCCAAAATG
1 GGCC-AAATG
*
92702437 GGCTAAATG
1 GGCCAAATG
*
92702446 GGCCTAATG
1 GGCCAAATG
92702455 GGC
1 GGC
92702458 TATTAGGCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.30, C:0.20, G:0.35, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:92702581 original size:29 final size:29
Alignment explanation
Indices: 92702539--92702650 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
92702529 ATAATATGAT
92702539 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * *
92702568 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* *
92702597 CTGGGCC-AGATGGGCCATATGAATGAG-A
1 TTGGGCCTA-ATGGGCCATATGAATGTGAA
* *
92702625 TTGGGCCCAATGGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
92702651 ATGTACGGGT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
28 23 0.33
29 47 0.67
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGAA
Found at i:92702621 original size:58 final size:57
Alignment explanation
Indices: 92702531--92702643 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
92702521 GCATGAGTAT
** * * *
92702531 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCCTAATGGGCCATATGAATGAG-ATTGGGCCCAATGGGCCATAAG
92702589 AATATGAACTGGGCC-AGATGGGCCATATGAATGAGATTGGGCCCAATGGGCCATA
1 AATATGAACTGGGCCTA-ATGGGCCATATGAATGAGATTGGGCCCAATGGGCCATA
92702644 TGCATGTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 19 0.39
58 30 0.61
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (57 bp):
AATATGAACTGGGCCTAATGGGCCATATGAATGAGATTGGGCCCAATGGGCCATAAG
Found at i:92706639 original size:25 final size:25
Alignment explanation
Indices: 92706586--92706665 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 25
92706576 CCAATTTGTA
92706586 AAATTAC-AGAAATACCCTTGTAGGGT
1 AAATTACTA-AAATACCC-TGTAGGGT
* *
92706612 AAATTGCTAAAATACCCCGTAGGGT
1 AAATTACTAAAATACCCTGTAGGGT
92706637 AAATTACTAAAATACTCCTGTAGGGT
1 AAATTACTAAAATAC-CCTGTAGGGT
92706663 AAA
1 AAA
92706666 ATGGCGTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 21 0.44
26 26 0.54
27 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.26
Consensus pattern (25 bp):
AAATTACTAAAATACCCTGTAGGGT
Found at i:92706947 original size:25 final size:25
Alignment explanation
Indices: 92706917--92707053 Score: 139
Period size: 25 Copynumber: 5.5 Consensus size: 25
92706907 TATTCTGATT
* *
92706917 ATGGCTTTGTCCCGATATGTTATTG
1 ATGGCTTTGTGCCAATATGTTATTG
* * *
92706942 AAGGCTTTGTGTCAATATGCTATTG
1 ATGGCTTTGTGCCAATATGTTATTG
* * *
92706967 AAGGCTTTGTGCTAGTATGTTATTG
1 ATGGCTTTGTGCCAATATGTTATTG
* *
92706992 ATGTCTTTGTGCCAATATGATATTG
1 ATGGCTTTGTGCCAATATGTTATTG
* ** * *
92707017 ATGGCTATGTGCTGATCTGTTATCG
1 ATGGCTTTGTGCCAATATGTTATTG
92707042 ATGGCTTTGTGC
1 ATGGCTTTGTGC
92707054 TAATCGTATT
Statistics
Matches: 90, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 90 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (25 bp):
ATGGCTTTGTGCCAATATGTTATTG
Found at i:92707000 original size:50 final size:50
Alignment explanation
Indices: 92706930--92707053 Score: 160
Period size: 50 Copynumber: 2.5 Consensus size: 50
92706920 GCTTTGTCCC
* * * *
92706930 GATATGTTATTGAAGGCTTTGTGTCAATATGCTATTGAAGGCTTTGTGCT
1 GATATGTTATTGATGGCTTTGTGCCAATATGATATTGAAGGCTATGTGCT
* *
92706980 -AGTATGTTATTGATGTCTTTGTGCCAATATGATATTGATGGCTATGTGCT
1 GA-TATGTTATTGATGGCTTTGTGCCAATATGATATTGAAGGCTATGTGCT
* *
92707030 GATCTGTTATCGATGGCTTTGTGC
1 GATATGTTATTGATGGCTTTGTGC
92707054 TAATCGTATT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
49 1 0.02
50 61 0.97
51 1 0.02
ACGTcount: A:0.20, C:0.11, G:0.26, T:0.43
Consensus pattern (50 bp):
GATATGTTATTGATGGCTTTGTGCCAATATGATATTGAAGGCTATGTGCT
Found at i:92715011 original size:63 final size:63
Alignment explanation
Indices: 92714943--92715071 Score: 249
Period size: 63 Copynumber: 2.0 Consensus size: 63
92714933 GGTTGATTGC
*
92714943 ATTCTGTCTTCTTAAATTGTTAAAATTGTGTTTATGTTGTTGTAGGCCTCGGTAAGATGCTTG
1 ATTCTGTCTTCTTAAATTGTTAAAATTGTGTTTATGTTGTTATAGGCCTCGGTAAGATGCTTG
92715006 ATTCTGTCTTCTTAAATTGTTAAAATTGTGTTTATGTTGTTATAGGCCTCGGTAAGATGCTTG
1 ATTCTGTCTTCTTAAATTGTTAAAATTGTGTTTATGTTGTTATAGGCCTCGGTAAGATGCTTG
92715069 ATT
1 ATT
92715072 AAGTAAAATC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.22, C:0.11, G:0.21, T:0.47
Consensus pattern (63 bp):
ATTCTGTCTTCTTAAATTGTTAAAATTGTGTTTATGTTGTTATAGGCCTCGGTAAGATGCTTG
Found at i:92719321 original size:30 final size:30
Alignment explanation
Indices: 92719263--92719321 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
92719253 ATTTTCGGGC
* **
92719263 TTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 TTAGGGGCAAAATGGTCATTTTACCAAAGT
**
92719293 TTAGGGGCAAAATGGTTGTTTTACCAAAG
1 TTAGGGGCAAAATGGTCATTTTACCAAAG
92719322 ATATAAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (30 bp):
TTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:92721293 original size:37 final size:37
Alignment explanation
Indices: 92721093--92721281 Score: 288
Period size: 37 Copynumber: 5.1 Consensus size: 37
92721083 ACCTTTAGCT
* * **
92721093 CGGACGTAATCTCCACACGAAGTTGTCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
92721130 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
92721167 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
* *
92721204 TGGACATACTCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
* *
92721241 CGGACATAATCTCCAAACGTAGTCATCGGGTCTCACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
92721278 CGGA
1 CGGA
92721282 ATATATTTCC
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 140 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:92721496 original size:47 final size:47
Alignment explanation
Indices: 92721444--92721864 Score: 617
Period size: 47 Copynumber: 9.0 Consensus size: 47
92721434 TTTCACACTA
* * ** * *
92721444 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92721491 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92721538 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
92721585 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
92721632 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92721679 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
92721726 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
92721773 GCCATTCGGCCTTATCAGACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
92721820 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
92721865 AAAATCCTAA
Statistics
Matches: 336, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 336 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:92721864 original size:94 final size:94
Alignment explanation
Indices: 92721444--92721843 Score: 683
Period size: 94 Copynumber: 4.3 Consensus size: 94
92721434 TTTCACACTA
* * *
92721444 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
92721509 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * * *
92721538 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTGGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * *
92721603 ATATATGCATGTTCACATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
92721632 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
92721697 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* *
92721726 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
92721791 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
92721820 GCCATTCGGCCTTATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
92721844 ACACATTCAC
Statistics
Matches: 285, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 285 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:92724982 original size:40 final size:40
Alignment explanation
Indices: 92724938--92725287 Score: 461
Period size: 40 Copynumber: 8.8 Consensus size: 40
92724928 CCAGCATGAT
* * * * *
92724938 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
92724978 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
92725018 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
92725058 TGCTCTTC-GGATTTAGCCCGGACATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
92725097 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
92725137 TGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
92725177 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
92725217 TGCTCTTC-GGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
92725256 TGCTCTTCGGGATTTAGCCCGGACATTTCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
92725288 CTCAATTCTC
Statistics
Matches: 268, Mismatches: 40, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
39 69 0.26
40 199 0.74
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:92725167 original size:119 final size:117
Alignment explanation
Indices: 92724938--92725287 Score: 475
Period size: 119 Copynumber: 2.9 Consensus size: 117
92724928 CCAGCATGAT
* * * * * *
92724938 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCATGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGATTTAGC-CGGATA
* * * * *
92725003 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
63 TATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
* * * *
92725058 TGCTCTTCGGATTTAGCCCGGACATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG-ATTTAG-CCGGATAT
92725123 ATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
64 ATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
* *
92725177 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGATAT
1 TGCTCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGATTTAG-CCGGATAT
*
92725242 ATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACATTTCACT
64 ATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACATATCACT
92725288 CTCAATTCTC
Statistics
Matches: 204, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
118 2 0.01
119 158 0.77
120 44 0.22
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (117 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGATTTAGCCGGATATAT
CACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACATATCACTAGCACGAA
Found at i:92725287 original size:159 final size:159
Alignment explanation
Indices: 92724938--92725287 Score: 565
Period size: 159 Copynumber: 2.2 Consensus size: 159
92724928 CCAGCATGAT
* * * * * * *
92724938 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCATGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCACGGACA
92725003 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
66 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
92725068 ATTTAGCCCGGACATATCACTAGCACGAA
131 ATTTAGCCCGGACATATCACTAGCACGAA
* * * *
92725097 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCACGGACA
92725162 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
66 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
*
92725227 ATTTAGCCCGGATATATCACTAGCACGAA
131 ATTTAGCCCGGACATATCACTAGCACGAA
* * *
92725256 TGCTCTTCGGGATTTAGCCCGGACATTTCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
92725288 CTCAATTCTC
Statistics
Matches: 173, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
159 173 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (159 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCACGGACA
TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
ATTTAGCCCGGACATATCACTAGCACGAA
Found at i:92726599 original size:37 final size:37
Alignment explanation
Indices: 92726556--92726737 Score: 256
Period size: 37 Copynumber: 4.9 Consensus size: 37
92726546 GCTCGGACGT
* * *
92726556 AATCTCCACACGAAGTTATCGGGTCTTACACGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
92726593 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
92726630 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* ** * *
92726667 ACTCTCCACACGTAGTCATCGGGTCTTATTCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
92726704 AATCTCCGCACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
92726738 ATATATTTCC
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:92726952 original size:47 final size:47
Alignment explanation
Indices: 92726900--92727320 Score: 617
Period size: 47 Copynumber: 9.0 Consensus size: 47
92726890 TTTCACACTA
* * ** * *
92726900 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92726947 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92726994 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
92727041 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
92727088 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92727135 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * * *
92727182 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCATATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
92727229 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
92727276 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
92727321 AAAATCCTAA
Statistics
Matches: 336, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 336 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:92727314 original size:94 final size:94
Alignment explanation
Indices: 92726900--92727299 Score: 683
Period size: 94 Copynumber: 4.3 Consensus size: 94
92726890 TTTCACACTA
* * *
92726900 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
92726965 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * * *
92726994 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTGGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * *
92727059 ATATATGCATGTTCACATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
92727088 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
92727153 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* *
92727182 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCATATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
92727247 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
92727276 GCCATTCGGCCTTATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
92727300 ACACATTCAC
Statistics
Matches: 285, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 285 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:92736685 original size:27 final size:26
Alignment explanation
Indices: 92736637--92736696 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
92736627 GCGAGGCTGC
*
92736637 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
92736664 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
92736690 CAAATAT
1 CAGATAT
92736697 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:92740691 original size:27 final size:27
Alignment explanation
Indices: 92740612--92740699 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
92740602 TAGTTTACCA
* *
92740612 AATTACTGAAATACCCTTGTAGGTTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
92740639 AAATACCAAAATACCCCTGTACGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
92740666 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
92740693 AATTACC
1 AATTACC
92740700 ATTTTGCCCC
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:92741500 original size:27 final size:26
Alignment explanation
Indices: 92741462--92741521 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
92741452 ATATATATAT
* *
92741462 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
92741488 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
92741515 ATATCTG
1 ATATCTG
92741522 GCAGCTTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:92743698 original size:40 final size:40
Alignment explanation
Indices: 92743639--92743765 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
92743629 TCGGATACAA
* * *
92743639 CCGGATATAACCACACGCACGAATGCCTTCGGGTTTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTATTAGC
* *
92743679 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTATTAGC
* *
92743719 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTATTAGC
92743759 CCGGATA
1 CCGGATA
92743766 AAGTCACTAG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTATTAGC
Found at i:92743779 original size:80 final size:80
Alignment explanation
Indices: 92743639--92743806 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
92743629 TCGGATACAA
* * *
92743639 CCGGATATAACCACACGCACGAATGCCTTCGGGTTTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
92743704 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
92743719 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
* *
92743782 TTCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
92743799 CCGGATAT
1 CCGGATAT
92743807 CATTCAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 74 0.96
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:92743788 original size:40 final size:39
Alignment explanation
Indices: 92743639--92743806 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 39
92743629 TCGGATACAA
* *
92743639 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTTTTAGC
1 CCGGATATAACAACTA-GCAC-AATGCCTTCGGGTCTTAGC
* * *
92743679 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
*
92743719 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* *
92743759 CCGGATA-AAGTC-ACTAGCACAATTTCCTTCGGGTCTTAAC
1 CCGGATATAA--CAACTAGCACAA-TGCCTTCGGGTCTTAGC
92743799 CCGGATAT
1 CCGGATAT
92743807 CATTCAATTG
Statistics
Matches: 112, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 4 0.04
40 107 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:92744004 original size:22 final size:22
Alignment explanation
Indices: 92743976--92744021 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
92743966 ATTACACATC
92743976 CATAATTTCATTTCACATAATT
1 CATAATTTCATTTCACATAATT
92743998 CATAATTTCATTTCACATAATT
1 CATAATTTCATTTCACATAATT
92744020 CA
1 CA
92744022 AGTAGGGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (22 bp):
CATAATTTCATTTCACATAATT
Found at i:92746910 original size:33 final size:33
Alignment explanation
Indices: 92746865--92746963 Score: 146
Period size: 33 Copynumber: 3.0 Consensus size: 33
92746855 CAAGCTCGTC
* *
92746865 AAGCATGGAAAAACACTGAATTTGATTCTTGTT
1 AAGCATGAAAAAACACCGAATTTGATTCTTGTT
*
92746898 AAGCATGAAAAAACACCGAATTTGATTCTTCTT
1 AAGCATGAAAAAACACCGAATTTGATTCTTGTT
*
92746931 AAGCATGGAAAAAA-ACCAAATTTGATTCTTGTT
1 AAGCAT-GAAAAAACACCGAATTTGATTCTTGTT
92746964 CCCTATCTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 53 0.88
34 7 0.12
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (33 bp):
AAGCATGAAAAAACACCGAATTTGATTCTTGTT
Found at i:92748481 original size:621 final size:621
Alignment explanation
Indices: 92747299--92748530 Score: 1879
Period size: 621 Copynumber: 2.0 Consensus size: 621
92747289 ATTAGCAACG
* * *
92747299 GTATCTGACGATACAATTGCCTTGCATAGCTTGCAAGATTATTGTGATTAAATTGTTTCAAGGTA
1 GTATCTGACGATACAATTGCCTTGCATAGCTTGCAAGATTATTGTAATTAAACTGTTTCAAGCTA
* * * **
92747364 AGGATACTTTGTTACCTCACATAGTCTTTTATGTTCTTATAAAATCGAGTTAATTGTTTGAATTG
66 AGGATACTTTGTTACCTCACATAATCTTTTATGTGCTTATAAAATCAAGTTAATCATTTGAATTG
** * * *
92747429 ACATATGGATATGTTTAAGAGATTATTTCAATTTAATAAGTATGTATGTGCTATAACATATTTTC
131 ACATATGGATATGTACAAGAGATTATTTCAATTTAATAAGTA-GTATATGCAATAACATATTTGC
* *
92747494 CTATTAATATTTGTTTAATCGATTGAATTGACATAGAGATATGTCCAAGAGATGAATGGATTTTG
195 CTATTAAGATTTGCTTAATCGATTGAATTGACATAGAGATATGTCCAAGAGATGAATGGATTTTG
* *
92747559 GTAGGTGAGTATGTTCATAAGTTAGCAAATTGCCAAGTTGCAGTGAATTTATTCATAAGAATATA
260 GTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTGCAGTGAATTTATTCATAAGAACATA
* * *
92747624 AACATGAGTTTAATAATTCTATGCGATGAAATGTAATTAATCTGCACAATTATGTCATCTTGATT
325 AACATGAGTTTAATAATTCTAAGCGAAGAAATGTAATTAATCTACACAATTATGTCATCTTGATT
* * *
92747689 AAAGTCGTATTTTGAAATCATGCATTTGAGATTTCTTTATTTAGTTTACTTAGTTTAAAGTTTGA
390 AAAGTCGTATTTTGAAATCATGCATTGGAGATTTATTTATTTAGTTTACTTAGTTTAAAATTTGA
*
92747754 GTTTTTAGTCACCTTCTTCAAAAAAATATTTTTCTTCACCAAAGTGTTTTAAATAGCATTCATAA
455 GTTTTTAATCACCTTCTTCAAAAAAATATTTTTCTTCACCAAAGTGTTTTAAATAGCATTCATAA
* * *
92747819 ATAGATCTTTTCACAGTCTCTGTGGGTATGATAACTCGACATTTACTTGTCACTTTATTACTTGT
520 ATAGATCTTTTCACAGTCCCTATGGGTACGATAACTCGACATTTACTTGTCACTTTATTACTTGT
*
92747884 TGCGATTGTGTACACTTGCACATTTCTGTTGTTTTAT
585 TGCGATTGCGTACACTTGCACATTTCTGTTGTTTTAT
* *
92747921 GTATCTGACGATACATTTTCCTTGCATAGCTTGCAAGATTATTGTAATTAAACTGTTTCAAGCTA
1 GTATCTGACGATACAATTGCCTTGCATAGCTTGCAAGATTATTGTAATTAAACTGTTTCAAGCTA
* * * *
92747986 GGGATACTTTGTTACCTCACATAATCTTTTATGTGCTTATTAGATTTAAG-TAATCATTTGAATT
66 AGGATACTTTGTTACCTCACATAATCTTTTATGTGCTTA-TAAAATCAAGTTAATCATTTGAATT
*
92748050 GACATA-GGAATATGTACAAGAGATTATTTCGATTTAATAAGTA-TATATGCAATAACATATTTG
130 GACATATGG-ATATGTACAAGAGATTATTTCAATTTAATAAGTAGTATATGCAATAACATATTTG
*
92748113 CCTATTAAGATTTGCTTAATCGGTTGAATTGACATA-AGGATATAGT-CAAGAGATGAATGGATT
194 CCTATTAAGATTTGCTTAATCGATTGAATTGACATAGA-GATAT-GTCCAAGAGATGAATGGATT
* * ** * *
92748176 TTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCGATTTGTTGTGAATTTATTCGTAATAAC
257 TTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTGCAGTGAATTTATTCATAAGAAC
**
92748241 ATAAACATGAGTTTAATAATTCTAAGTTAAGAAATGTAATTAATCTAACACAATTATGTCATCTT
322 ATAAACATGAGTTTAATAATTCTAAGCGAAGAAATGTAATTAATCT-ACACAATTATGTCATCTT
**
92748306 GATT-AAGATCGTATTTTGAAATTGTGCATTGGAGATTTATTTATTTAGTTTACTTAGTTTAAAA
386 GATTAAAG-TCGTATTTTGAAATCATGCATTGGAGATTTATTTATTTAGTTTACTTAGTTTAAAA
*
92748370 TCTT-AGTTTTTAATCACC-TCTTGAAACAAAATATTTTTCTTCACCAAAGTGTTTTAAATAGCA
450 T-TTGAGTTTTTAATCACCTTCTTCAAA-AAAATATTTTTCTTCACCAAAGTGTTTTAAATAGCA
*
92748433 TTCATAAGTA-ATTCTTTTCACAGTCCCTATGGGTACGATAACTCGACATTTACTTGTCACTTTA
513 TTCATAAATAGA-TCTTTTCACAGTCCCTATGGGTACGATAACTCGACATTTACTTGTCACTTTA
92748497 TTACTTGTTGCGATTGCGTACACTTGCACATTTC
577 TTACTTGTTGCGATTGCGTACACTTGCACATTTC
92748531 CATCGTCCAG
Statistics
Matches: 553, Mismatches: 48, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
619 1 0.00
620 182 0.33
621 217 0.39
622 147 0.27
623 6 0.01
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (621 bp):
GTATCTGACGATACAATTGCCTTGCATAGCTTGCAAGATTATTGTAATTAAACTGTTTCAAGCTA
AGGATACTTTGTTACCTCACATAATCTTTTATGTGCTTATAAAATCAAGTTAATCATTTGAATTG
ACATATGGATATGTACAAGAGATTATTTCAATTTAATAAGTAGTATATGCAATAACATATTTGCC
TATTAAGATTTGCTTAATCGATTGAATTGACATAGAGATATGTCCAAGAGATGAATGGATTTTGG
TAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTGCAGTGAATTTATTCATAAGAACATAA
ACATGAGTTTAATAATTCTAAGCGAAGAAATGTAATTAATCTACACAATTATGTCATCTTGATTA
AAGTCGTATTTTGAAATCATGCATTGGAGATTTATTTATTTAGTTTACTTAGTTTAAAATTTGAG
TTTTTAATCACCTTCTTCAAAAAAATATTTTTCTTCACCAAAGTGTTTTAAATAGCATTCATAAA
TAGATCTTTTCACAGTCCCTATGGGTACGATAACTCGACATTTACTTGTCACTTTATTACTTGTT
GCGATTGCGTACACTTGCACATTTCTGTTGTTTTAT
Found at i:92749017 original size:53 final size:53
Alignment explanation
Indices: 92748937--92749041 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
92748927 TTCCTTTTTA
* * * * *
92748937 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
92748990 AACTCACCATTGACATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
92749042 CGTAGTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (53 bp):
AACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:92754993 original size:13 final size:13
Alignment explanation
Indices: 92754975--92754999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92754965 CCGAGCACAC
92754975 GCCCATGTCCCTT
1 GCCCATGTCCCTT
92754988 GCCCATGTCCCT
1 GCCCATGTCCCT
92755000 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.16, T:0.28
Consensus pattern (13 bp):
GCCCATGTCCCTT
Found at i:92756007 original size:51 final size:51
Alignment explanation
Indices: 92755913--92756012 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
92755903 TTACCACATA
* **
92755913 ACATGTAACACATCCATAATGAACTCAAACCTCTCTATGAGCTCAGATGTT
1 ACATGTAACACATCCATAATGAACTCAAACCTCTCAACAAGCTCAGATGTT
* ** *
92755964 ACATG-AATCACATCCATTATGAACTCGGACCTCTCAACAAGCTCGGATG
1 ACATGTAA-CACATCCATAATGAACTCAAACCTCTCAACAAGCTCAGATG
92756013 CACGCATTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.05
51 39 0.95
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCAAACCTCTCAACAAGCTCAGATGTT
Found at i:92756055 original size:43 final size:42
Alignment explanation
Indices: 92755982--92756097 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 42
92755972 CACATCCATT
* * *
92755982 ATGAACTCGGACCTCTCAACAAGCTCGGATG-CACGCATTCATA
1 ATGAACTAGGACCTCTCAACGAGTTCGGATGCCACGCA-TC-TA
* * *
92756025 ATGAACTAGGACCTCTCAACGAGTTTGGATGCCACGTATCTC
1 ATGAACTAGGACCTCTCAACGAGTTCGGATGCCACGCATCTA
* *
92756067 ATGAACCCA-GACCTCTCAACGAGTTCAGATG
1 ATGAA-CTAGGACCTCTCAACGAGTTCGGATG
92756098 TTTTAGTTCC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
42 26 0.42
43 31 0.50
44 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (42 bp):
ATGAACTAGGACCTCTCAACGAGTTCGGATGCCACGCATCTA
Found at i:92760541 original size:39 final size:40
Alignment explanation
Indices: 92760417--92760562 Score: 150
Period size: 40 Copynumber: 3.7 Consensus size: 40
92760407 GAGCAATTGA
* * * * * ** *
92760417 ATGATATCCGGGCTAAGTCCCGAAGACATTTATGCTGATA
1 ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAATT
* * * *
92760457 ATTACATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTT
1 ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAATT
*
92760497 ATGATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAATT
1 ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAATT
* *
92760536 GTGATATCCGGGTTAAGTCCCGAAGGC
1 ATGATATCCGGGTTAAGACCCGAAGGC
92760563 CTTTGTGCGG
Statistics
Matches: 87, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 34 0.39
40 53 0.61
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
ATGATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAATT
Found at i:92760569 original size:79 final size:80
Alignment explanation
Indices: 92760417--92760602 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
92760407 GAGCAATTGA
* ** *
92760417 ATGATATCCGGGCTAAGTCCCGAAGACATTTATGCTGATAATTACATCCGGGTTAAGACCCGAAG
1 ATGATATCCGGGCTAAGTCCCGAAGGCATTTATGCAAATAATGACATCCGGGTTAAGACCCGAAG
92760482 GCAATTGTGCGAGTT
66 GCAATTGTGCGAGTT
* * ** * *
92760497 ATGATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAG
1 ATGATATCCGGGCTAAGTCCCGAAGGCATTTATGCAAATAATGACATCCGGGTTAAGACCCGAAG
** *
92760561 GCCTTTGTGCGGGTT
66 GCAATTGTGCGAGTT
** * *
92760576 ACCATAACCGGGCTATGTCCCGAAGGC
1 ATGATATCCGGGCTAAGTCCCGAAGGC
92760603 GTTTGAACGA
Statistics
Matches: 88, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
79 62 0.70
80 26 0.30
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATGATATCCGGGCTAAGTCCCGAAGGCATTTATGCAAATAATGACATCCGGGTTAAGACCCGAAG
GCAATTGTGCGAGTT
Found at i:92768687 original size:40 final size:39
Alignment explanation
Indices: 92768643--92768757 Score: 131
Period size: 39 Copynumber: 2.9 Consensus size: 39
92768633 TGATAATTAC
92768643 ATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTATGAT
1 ATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTATGAT
* * * *
92768683 ATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGAT
1 ATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTATGAT
* * ** *
92768722 ATCCGTGTTAAGTCTCGAAGGCCTTTGTGCGGGTTA
1 ATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTA
92768758 CCATAACCGG
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 34 0.56
40 27 0.44
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (39 bp):
ATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTATGAT
Found at i:92775021 original size:29 final size:29
Alignment explanation
Indices: 92774989--92775091 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
92774979 GTGACGAGAT
* *
92774989 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
92775018 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
92775047 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
92775076 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92775092 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:92783006 original size:29 final size:29
Alignment explanation
Indices: 92782974--92783076 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
92782964 GTGACGAGAT
* *
92782974 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
92783003 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
92783032 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
92783061 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92783077 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:92786331 original size:27 final size:27
Alignment explanation
Indices: 92786301--92786403 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 27
92786291 GGCTGCCAAA
* *
92786301 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
* *
92786328 ACAGATAATCATGGTAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
92786355 ACAGATATATGTGGCAGAGCCACTAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
92786383 -CAGATAATTGTGGCATAGCCA
1 ACAGATAA-TGTGGCAGAGCCA
92786404 TCAAGACGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.02
27 48 0.75
28 15 0.23
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:92789296 original size:30 final size:29
Alignment explanation
Indices: 92789202--92789303 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
92789192 TATAGTGAAT
* * *
92789202 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
92789231 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
92789259 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
92789289 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
92789304 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:92794776 original size:79 final size:81
Alignment explanation
Indices: 92794640--92794822 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
92794630 TCGAATGATG
* *
92794640 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
92794704 TGTGAGAGTTACTA-A
66 TGTGAGAGTTACTATA
* * **
92794719 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
92794781 TTTGTGCGAGTTACTATA
64 TTTGTGAGAGTTACTATA
* *
92794799 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
92794823 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGAGAGTTACTATA
Found at i:92794838 original size:40 final size:40
Alignment explanation
Indices: 92794641--92794824 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
92794631 CGAATGATGT
* * *
92794641 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
92794681 CCGGACTAAGAT-CCGAAGGCATTTGTGAGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
92794721 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92794759 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
92794800 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
92794825 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 82 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:92794846 original size:79 final size:79
Alignment explanation
Indices: 92794641--92794847 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
92794631 CGAATGATGT
* *
92794641 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
92794704 TGTGAGAGTTACTAATT
63 TGTGAGAGTTACTAATA
* *
92794721 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
*
92794783 TGTGCGAGTTACT-ATAA
63 TGTGAGAGTTACTAAT-A
* **
92794800 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
92794848 ATTCCAAAGG
Statistics
Matches: 108, Mismatches: 11, Indels: 17
0.79 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 62 0.57
80 43 0.40
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GAGAGTTACTAATA
Found at i:92795055 original size:22 final size:23
Alignment explanation
Indices: 92795030--92795075 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
92795020 CCTTATGTAT
92795030 GAATATA-GGGTTGGAATGTGAA
1 GAATATAGGGGTTGGAATGTGAA
92795052 GAATATAGGGGTTGGAATGTGAA
1 GAATATAGGGGTTGGAATGTGAA
92795075 G
1 G
92795076 TAGTAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.35, C:0.00, G:0.39, T:0.26
Consensus pattern (23 bp):
GAATATAGGGGTTGGAATGTGAA
Found at i:92802937 original size:40 final size:39
Alignment explanation
Indices: 92802746--92802930 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 39
92802736 TCGAATGATG
* *
92802746 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
92802786 TCCGGACTAAGAT-CCGAA-GCAATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGC-ATTTGTGCGAGTTACTAA
*
92802825 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTGAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
92802865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
92802905 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92802931 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
39 34 0.27
40 84 0.67
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:92802961 original size:79 final size:80
Alignment explanation
Indices: 92802747--92802963 Score: 218
Period size: 79 Copynumber: 2.7 Consensus size: 80
92802737 CGAATGATGT
*
92802747 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGA-TCCGAA-GCAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGGA-TAA-ATTCCGAAGGCAA
*
92802808 TTTGTGCGAGTTACTAATT
62 TTTGTGCGAGTTACTAATA
* * * *
92802827 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTGA-ATCCGGGTTAAGTCCCGAAGGC-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCT-ATATCC-GGATAAATTCCGAAGGCAAT
92802888 TTGTGCGAGTTACT-ATAA
63 TTGTGCGAGTTACTAAT-A
* **
92802906 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGATAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGATAAATTCCGAAGG
92802964 TACGTGATTC
Statistics
Matches: 113, Mismatches: 13, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
78 2 0.02
79 66 0.58
80 45 0.40
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGATAAATTCCGAAGGCAATTTG
TGCGAGTTACTAATA
Found at i:92805264 original size:41 final size:41
Alignment explanation
Indices: 92805219--92805407 Score: 102
Period size: 41 Copynumber: 5.1 Consensus size: 41
92805209 TGAAAGATAA
92805219 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
92805260 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
92805290 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
92805331 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
92805361 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
92805402 ATGTAG
1 ATGTAG
92805408 ACAAGAGAGC
Statistics
Matches: 102, Mismatches: 20, Indels: 52
0.59 0.11 0.30
Matches are distributed among these distances:
29 2 0.02
30 16 0.16
31 18 0.18
32 2 0.02
33 6 0.06
34 2 0.02
35 2 0.02
36 2 0.02
37 2 0.02
38 6 0.06
39 2 0.02
40 18 0.18
41 22 0.22
42 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Done.