Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 30 of 410
Found at i:7492707 original size:11 final size:11
Alignment explanation
Indices: 7492672--7492723 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7492662 TTATAAATAA
7492672 AATGTAT-AAT
1 AATGTATAAAT
* *
7492682 AATATAAATAAT
1 AATGTATA-AAT
7492694 AATGTATAAAT
1 AATGTATAAAT
*
7492705 AATGTAAAAAT
1 AATGTATAAAT
*
7492716 AATATATA
1 AATGTATA
7492724 TTATTTTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 5 0.15
11 19 0.58
12 9 0.27
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (11 bp):
AATGTATAAAT
Found at i:7495651 original size:16 final size:16
Alignment explanation
Indices: 7495627--7495678 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
7495617 TGGTTCACTA
*
7495627 TAATGGAATAGGGTTG
1 TAATGGAATAGAGTTG
*
7495643 TAATTGAATAGAGTTG
1 TAATGGAATAGAGTTG
* *
7495659 TAATGGAATAAAGCTG
1 TAATGGAATAGAGTTG
7495675 TAAT
1 TAAT
7495679 CAGTAAGTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.38, C:0.02, G:0.27, T:0.33
Consensus pattern (16 bp):
TAATGGAATAGAGTTG
Found at i:7495885 original size:14 final size:14
Alignment explanation
Indices: 7495849--7495889 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
7495839 GTTATTAAAT
*
7495849 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
7495862 -TTATTAAAAATAA
1 TTTAATAAAAATAA
7495875 TTTAATAAAAATAA
1 TTTAATAAAAATAA
7495889 T
1 T
7495890 AAATAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:7495938 original size:58 final size:57
Alignment explanation
Indices: 7495845--7495983 Score: 190
Period size: 58 Copynumber: 2.4 Consensus size: 57
7495835 TATTGTTATT
* *
7495845 AAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACT-
1 AAATTTTAATATAATTATTATTAAAAATAACTTAAT-AAAATAATAAATAATTTAA-TA
* * * *
7495903 ATATTTTAACATAATTATTATTAAATATAACTTAATAAAATAATATATAATTTAATA
1 AAATTTTAATATAATTATTATTAAAAATAACTTAATAAAATAATAAATAATTTAATA
7495960 AAATTCTTAATATAATTATTATTA
1 AAATT-TTAATATAATTATTATTA
7495984 TATAAATTAA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
56 1 0.01
57 22 0.31
58 48 0.68
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (57 bp):
AAATTTTAATATAATTATTATTAAAAATAACTTAATAAAATAATAAATAATTTAATA
Found at i:7509900 original size:16 final size:17
Alignment explanation
Indices: 7509869--7509901 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7509859 TTCATAAGTA
7509869 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
7509886 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7509902 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7510259 original size:46 final size:46
Alignment explanation
Indices: 7510199--7510598 Score: 579
Period size: 46 Copynumber: 8.7 Consensus size: 46
7510189 GCATAGTGTT
* * *
7510199 TTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATGGTATC
* * * * *
7510245 TTTCGACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
* *** *
7510291 TTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
* *
7510337 TTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
* *
7510383 TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCGTGGTATC
1 TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
*
7510429 TTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
7510475 TTTCAACCATGGTCTTA-TACATTTCATATCAGGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACT-CATTTCATATCAGGTTGCCATGGTATC
* *
7510521 TTTCAACCATGCTCTTACACATTTCATATCAGGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
*
7510567 TTTCAACCATGGTCTTACACATTTCATATCAG
1 TTTCAACCATGGTCTTACTCATTTCATATCAG
7510599 AGAGCACACT
Statistics
Matches: 328, Mismatches: 23, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
45 4 0.01
46 324 0.99
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATC
Found at i:7515503 original size:49 final size:49
Alignment explanation
Indices: 7515382--7515751 Score: 237
Period size: 49 Copynumber: 7.7 Consensus size: 49
7515372 GGGATAAGAT
* * * ** * *
7515382 GCCGACGCCATGTCCCATACATGGTCTTACACTGGCTAGC--ATATCAAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTTTCATATATCGAG
* * * *
7515430 GTCGATGTCATGTCCCAGATAGGTCTTACACT-GACTTTCATATATAGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CTTTCATATATCGAG
* *
7515479 GCCGATGCCGTGTCCCAGACAGGTCTTACACTAGCTTTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCGAG
* * *
7515527 TGCCGATGCCATGTCCCATACTGGTCTTACACTAGCTTGT-ATATCTCGAG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-TCATATATCGAG
* * * * * * *
7515577 GCCAATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCGAG
* * * * * * *
7515623 GCCGATG-TAGGTCCCAGACATGTCTTACACTGGCTTGTAATATCTCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-TCATATATCGAG
* * * * * *
7515672 GCTGATG-TATGTCCCAGACATGTCTTACACT-GACTCTCAGA-AT-GTG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CTTTCATATATCGAG
* * *
7515718 GCTGAT-ACATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGC
7515752 ACACATATCA
Statistics
Matches: 262, Mismatches: 46, Indels: 30
0.78 0.14 0.09
Matches are distributed among these distances:
46 68 0.26
47 18 0.07
48 46 0.18
49 127 0.48
50 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATATCGAG
Found at i:7515689 original size:95 final size:96
Alignment explanation
Indices: 7515390--7515710 Score: 273
Period size: 95 Copynumber: 3.3 Consensus size: 96
7515380 ATGCCGACGC
* * ** * * * *
7515390 CATGTCCCATACATGGTCTTACACTGGCTAGCAT-ATCAAAGTCGATGTCATGTCCCAGA-TAGG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCATCAATGCCGATGCCAGGTCCCAGACT-GG
* *
7515453 TCTTACACT-GACTT-TCATATAT-AGAGGCCGATG
64 TCTTACACTAG-CTTGT-ATATCTCA-AGGCCAATG
* * * ** * *
7515486 CCGTGTCCCAGACAGGTCTTACACTAGCTTTCATCTATCGGTGCCGATGCCATGTCCCATACTGG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCATC-ATCAATGCCGATGCCAGGTCCCAGACTGG
*
7515551 TCTTACACTAGCTTGTATATCTCGAGGCCAATG
64 TCTTACACTAGCTTGTATATCTCAAGGCCAATG
* *
7515584 CATGTCCCAGACATGTCTTACACTAGCTCTCGTC-TCAATGCCGATG-TAGGTCCCAGACAT-GT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCATCAATGCCGATGCCAGGTCCCAGAC-TGGT
* **
7515646 CTTACACTGGCTTGTAATATCTCAAGGCTGATG
65 CTTACACTAGCTTGT-ATATCTCAAGGCCAATG
*
7515679 TATGTCCCAGACATGTCTTACACT-GACTCTCA
1 CATGTCCCAGACATGTCTTACACTAG-CTCTCA
7515711 GAATGTGGCT
Statistics
Matches: 185, Mismatches: 30, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
94 26 0.14
95 53 0.29
96 16 0.09
97 41 0.22
98 46 0.25
99 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (96 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCATCAATGCCGATGCCAGGTCCCAGACTGGTC
TTACACTAGCTTGTATATCTCAAGGCCAATG
Found at i:7515732 original size:95 final size:93
Alignment explanation
Indices: 7515527--7515751 Score: 240
Period size: 95 Copynumber: 2.4 Consensus size: 93
7515517 CATCTATCGG
* * *
7515527 TGCCGATGCCATGTCCCATAC-TGGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCC
1 TGCCGAT-ACATGTCCCAGACAT-GTCTTACACTAGCTTGTATATCTCAAGGCCAATGCATGTCC
**
7515591 CAGACATGTCTTACACTAGCTCTCGTCTCAA
64 CAGACATGTCTTACACTAGCTCTCGAAT-AA
** * * ** *
7515622 TGCCGATGTAGGTCCCAGACATGTCTTACACTGGCTTGTAATATCTCAAGGCTGATGTATGTCCC
1 TGCCGATACATGTCCCAGACATGTCTTACACTAGCTTGT-ATATCTCAAGGCCAATGCATGTCCC
*
7515687 AGACATGTCTTACACT-GACTCTCAGAAT-G
65 AGACATGTCTTACACTAG-CTCTC-GAATAA
*
7515716 TGGCTGATACATGTCCCAGACATGTCTTACACTAGC
1 T-GCCGATACATGTCCCAGACATGTCTTACACTAGC
7515752 ACACATATCA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
94 27 0.25
95 79 0.73
96 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
TGCCGATACATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAATGCATGTCCCA
GACATGTCTTACACTAGCTCTCGAATAA
Found at i:7520053 original size:47 final size:46
Alignment explanation
Indices: 7519977--7520295 Score: 238
Period size: 47 Copynumber: 6.8 Consensus size: 46
7519967 TGGGTAAAGT
* * *
7519977 GCCGATACCATGTCCCAAACACGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCATATCTCAA
* * * *
7520024 GTCAATGCCATGTCCCAAACATGGTCTTACGA-TGGCT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTAC-ACTGGCTCAT-ATCTC-AA
* * * *
7520072 GTCGATG-CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATATCTC-AA
* * * * *
7520118 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCCCCTGTCTCCAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATATCT-CAA
* * * ** *
7520164 GCCGATGCCATGTCTCAGACATGTCTTACACTAGCCCCCATCTCCAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATATCT-CAA
* * *
7520211 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATAATGT--G
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGG--CTCAT-ATCTCAA
* *
7520259 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCA
7520296 CACACGAATA
Statistics
Matches: 230, Mismatches: 30, Indels: 27
0.80 0.10 0.09
Matches are distributed among these distances:
44 4 0.02
45 1 0.00
46 74 0.32
47 122 0.53
48 24 0.10
50 2 0.01
51 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATATCTCAA
Found at i:7520215 original size:93 final size:94
Alignment explanation
Indices: 7520074--7520243 Score: 227
Period size: 93 Copynumber: 1.8 Consensus size: 94
7520064 ATCTCGTAGT
* ** ** *
7520074 CGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGCCGATG-CATGTCCCAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCCACATCTCCAGGCCGATGCCATGTCCCAGACA
7520138 T-GTCTTACACTAGCCCCTGTCTCCATGC
66 TGGTCTTACACTAGCCCCTGTCTCCATGC
* * *
7520166 CGATGCCATGTCTCAGACATGTCTTACACTAGCCCCCATCTCCATGCCGATGCCATGTCCCAGAC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCCCACATCTCCAGGCCGATGCCATGTCCCAGAC
*
7520231 ATGGTTTTACACT
65 ATGGTCTTACACT
7520244 GGCTCTCATA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
92 5 0.08
93 37 0.57
94 14 0.22
95 9 0.14
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.27
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCCACATCTCCAGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCCCCTGTCTCCATGC
Found at i:7522264 original size:5 final size:4
Alignment explanation
Indices: 7522250--7522300 Score: 57
Period size: 4 Copynumber: 11.5 Consensus size: 4
7522240 CCCAATTTTC
7522250 TTTA TTTA TTTTA TTTTAA TTTAA TTTA TTTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA -TTTA -TTT-A TTT-A TTTA -TTTA TTTA TTTA TTTA TTTA
7522299 TT
1 TT
7522301 ATTATTATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
4 23 0.52
5 20 0.45
6 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:7522270 original size:24 final size:24
Alignment explanation
Indices: 7522254--7522306 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 24
7522244 ATTTTCTTTA
7522254 TTTATTTTATTTTAATTTAATTTAT
1 TTTA-TTTATTTTAATTTAATTTAT
7522279 TTTATTTA-TTT-ATTT-ATTTAT
1 TTTATTTATTTTAATTTAATTTAT
7522300 TATTATT
1 T-TTATT
7522307 ATTAAGTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 7 0.26
22 9 0.33
23 3 0.11
24 4 0.15
25 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTATTTATTTTAATTTAATTTAT
Found at i:7522316 original size:24 final size:22
Alignment explanation
Indices: 7522250--7522316 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
7522240 CCCAATTTTC
7522250 TTTATTTATTTTATT-TTAAT-
1 TTTATTTATTTTATTATTAATA
*
7522270 TTAATTTATTTTATTTATT--TA
1 TTTATTTATTTTA-TTATTAATA
7522291 TTTATTTATTATTATTATTAAGTA
1 TTTATTTATT-TTATTATTAA-TA
7522315 TT
1 TT
7522317 CTTGTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 13 0.34
21 16 0.42
22 5 0.13
24 4 0.11
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.70
Consensus pattern (22 bp):
TTTATTTATTTTATTATTAATA
Found at i:7527708 original size:2 final size:2
Alignment explanation
Indices: 7527675--7527700 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7527665 ATGAAAACAT
7527675 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7527701 AGTATATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7529318 original size:19 final size:20
Alignment explanation
Indices: 7529288--7529332 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
7529278 TTCAATTTAA
7529288 TATT-TTTT-ATATTCATT-T
1 TATTATTTTGATA-TCATTGT
7529306 T-TTATTTTGATATCATTGT
1 TATTATTTTGATATCATTGT
7529325 TATTATTT
1 TATTATTT
7529333 CATTCGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.09
18 10 0.43
19 5 0.22
20 6 0.26
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (20 bp):
TATTATTTTGATATCATTGT
Found at i:7530907 original size:17 final size:19
Alignment explanation
Indices: 7530871--7530912 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7530861 TATAAATTCG
7530871 AAAAATAAATTTGAGTAAA
1 AAAAATAAATTTGAGTAAA
*
7530890 AAAAATATATTT-AG-AAA
1 AAAAATAAATTTGAGTAAA
7530907 AAAAAT
1 AAAAAT
7530913 TGGGTATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 2 0.09
19 11 0.50
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (19 bp):
AAAAATAAATTTGAGTAAA
Found at i:7537833 original size:16 final size:15
Alignment explanation
Indices: 7537808--7537841 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7537798 ACAATAAAGT
7537808 ATATAAAATATTAAA
1 ATATAAAATATTAAA
*
7537823 ATATCAAAATATTAGA
1 ATAT-AAAATATTAAA
7537839 ATA
1 ATA
7537842 ATAATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (15 bp):
ATATAAAATATTAAA
Found at i:7538038 original size:22 final size:22
Alignment explanation
Indices: 7538002--7538043 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7537992 TATGGTGTAA
* *
7538002 AAAATACATATATAATATAATT
1 AAAATACATACATAAGATAATT
*
7538024 AAAATATATACATAAGATAA
1 AAAATACATACATAAGATAA
7538044 CATGTAGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:7538085 original size:15 final size:14
Alignment explanation
Indices: 7538054--7538118 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
7538044 CATGTAGAGA
7538054 AAATATATATATAT
1 AAATATATATATAT
7538068 AAATA-ATATAGTATT
1 AAATATATATA-TA-T
* *
7538083 AAAGATATATACAT
1 AAATATATATATAT
7538097 AAA-ATAGTATA-AT
1 AAATATA-TATATAT
*
7538110 ATATATATA
1 AAATATATA
7538119 CGTAATATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 14 0.33
14 18 0.42
15 6 0.14
16 5 0.12
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (14 bp):
AAATATATATATAT
Found at i:7538090 original size:25 final size:25
Alignment explanation
Indices: 7538062--7538182 Score: 83
Period size: 25 Copynumber: 5.0 Consensus size: 25
7538052 GAAAATATAT
*
7538062 ATATATAAATAATATAGTATTAA-AG
1 ATATATACATAATATAGTA-TAATAG
* *
7538087 ATATATACATAAAATAGTATAATAT
1 ATATATACATAATATAGTATAATAG
* * *
7538112 ATATATACGTAATATAGAAT-TTAG
1 ATATATACATAATATAGTATAATAG
* * *
7538136 A-ATATACCTAGTATA-T-TAAAAG
1 ATATATACATAATATAGTATAATAG
*
7538158 AATATATATATATATATA-TATAATA
1 -ATATATACATA-ATATAGTATAATA
7538183 TTAAGAAATA
Statistics
Matches: 73, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
21 1 0.01
22 2 0.03
23 13 0.18
24 13 0.18
25 40 0.55
26 4 0.05
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (25 bp):
ATATATACATAATATAGTATAATAG
Found at i:7539377 original size:16 final size:16
Alignment explanation
Indices: 7539340--7539378 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7539330 AGTTTTAAAT
*
7539340 CCAAAATTATTCGAAC
1 CCAAAATAATTCGAAC
**
7539356 ATAAAATAATTCGAAC
1 CCAAAATAATTCGAAC
7539372 CCAAAAT
1 CCAAAAT
7539379 TAACCCAAAT
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (16 bp):
CCAAAATAATTCGAAC
Found at i:7542264 original size:18 final size:18
Alignment explanation
Indices: 7542212--7542264 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
7542202 AAAATATAAG
*
7542212 AAATATTAAAAT-ACATA
1 AAATATTAAAATAACAAA
*
7542229 AAATGATTAACATAAACAAA
1 AAAT-ATTAAAAT-AACAAA
*
7542249 AAATCTTAAAATAACA
1 AAATATTAAAATAACA
7542265 TGAAAAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 4 0.14
18 11 0.38
19 6 0.21
20 8 0.28
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.25
Consensus pattern (18 bp):
AAATATTAAAATAACAAA
Found at i:7544505 original size:27 final size:28
Alignment explanation
Indices: 7544467--7544606 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
7544457 AGCATGGCTG
* *
7544467 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
7544493 TCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
7544521 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
7544548 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
7544575 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
7544602 CCAGA
1 CCAGA
7544607 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 4 0.04
27 84 0.81
28 16 0.15
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:7546262 original size:26 final size:26
Alignment explanation
Indices: 7546226--7546309 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7546216 CATGAAATTC
7546226 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7546252 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7546278 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7546304 TTATCA
1 TTATCA
7546310 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7553223 original size:22 final size:22
Alignment explanation
Indices: 7553198--7553254 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 22
7553188 TTAGTCCCAT
*
7553198 TATTTATTTATTTTTGTTTTAA
1 TATTTATTTATTTATGTTTTAA
7553220 TATTTA-TT-TTTATGTTTTAA
1 TATTTATTTATTTATGTTTTAA
*
7553240 -ATGTATTTGATTTAT
1 TATTTATTT-ATTTAT
7553255 TATATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 4 0.13
20 13 0.43
21 2 0.07
22 11 0.37
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (22 bp):
TATTTATTTATTTATGTTTTAA
Found at i:7553246 original size:19 final size:19
Alignment explanation
Indices: 7553208--7553247 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7553198 TATTTATTTA
*
7553208 TTTTTGTTTTAATATTTAT
1 TTTTTGTTTTAATATGTAT
7553227 TTTTATGTTTTAA-ATGTAT
1 TTTT-TGTTTTAATATGTAT
7553246 TT
1 TT
7553248 GATTTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTTGTTTTAATATGTAT
Found at i:7553257 original size:25 final size:23
Alignment explanation
Indices: 7553220--7553265 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
7553210 TTTGTTTTAA
*
7553220 TATTTATTTTTATGTTTTAAATG
1 TATTTATTTTTATATTTTAAATG
7553243 TATTTGATTTATTATATTTTAAA
1 TATTT-ATTT-TTATATTTTAAA
7553266 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
TATTTATTTTTATATTTTAAATG
Found at i:7554656 original size:3 final size:3
Alignment explanation
Indices: 7554648--7554836 Score: 98
Period size: 3 Copynumber: 63.7 Consensus size: 3
7554638 AGTTTTATAT
* * * *
7554648 TTA TTA TTA TTG TTA -TA TTTA TTA TTA TTT TTA GTA TTT TTA TT-
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * *
7554692 TCTG TTA TTA CTG TTA CTA TTT TTT TTA TTA GTA TTG TTA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * *** *
7554738 TTA TTA TTA TTA CCA TTA TTA TTA TTA TT- TTA TCA CTA CCG TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
7554785 TTA TTA -TA GTA TTA TTA GTA CTA TTA TTA CTA TTA TTT TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7554832 TTA TT
1 TTA TT
7554837 TTTTTAAAAC
Statistics
Matches: 137, Mismatches: 43, Indels: 12
0.71 0.22 0.06
Matches are distributed among these distances:
2 7 0.05
3 127 0.93
4 3 0.02
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:7554966 original size:20 final size:21
Alignment explanation
Indices: 7554929--7554968 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7554919 ATTTCCTTTG
7554929 TTATTTCAATTATTATTTTAT
1 TTATTTCAATTATTATTTTAT
*
7554950 TTATTTC-ATTTTTATTTTA
1 TTATTTCAATTATTATTTTA
7554969 CTTTTGTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTATTTCAATTATTATTTTAT
Found at i:7562649 original size:41 final size:41
Alignment explanation
Indices: 7562573--7562729 Score: 244
Period size: 41 Copynumber: 3.9 Consensus size: 41
7562563 TATTTTACCA
* * * *
7562573 AAAACGCCACTAAAAA-CAGAGCAATAGCGGGGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
*
7562613 AAAACGCCCCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
* *
7562654 AAAACGCCGTTAAAAATAAGAGCATTAGCGGTGCTTTTGGT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
7562695 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCT
1 AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCT
7562730 AAAAAATCAG
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 15 0.14
41 92 0.86
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGT
Found at i:7562734 original size:24 final size:25
Alignment explanation
Indices: 7562702--7562754 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
7562692 GGTAAAACGC
*
7562702 CGCT-AAAAATAAGAGCATTAGCGG
1 CGCTAAAAAATAAGAGCAATAGCGG
*
7562726 CGCTAAAAAATCAGAGCAATAGCGG
1 CGCTAAAAAATAAGAGCAATAGCGG
7562751 CGCT
1 CGCT
7562755 TTTGGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 4 0.15
25 22 0.85
ACGTcount: A:0.40, C:0.21, G:0.25, T:0.15
Consensus pattern (25 bp):
CGCTAAAAAATAAGAGCAATAGCGG
Found at i:7562749 original size:66 final size:66
Alignment explanation
Indices: 7562665--7562790 Score: 216
Period size: 66 Copynumber: 1.9 Consensus size: 66
7562655 AAACGCCGTT
* *
7562665 AAAAATAAGAGCATTAGCGGTGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCT
1 AAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCT
7562730 A
66 A
* *
7562731 AAAAATCAGAGCAATAGCGGCGCTTTTGGTAAAACGTCGCTAAAAATAAGAGCATTAGCG
1 AAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCG
7562791 ATGCTTTTGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.21
Consensus pattern (66 bp):
AAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCT
A
Found at i:7562750 original size:107 final size:106
Alignment explanation
Indices: 7562624--7562835 Score: 352
Period size: 107 Copynumber: 2.0 Consensus size: 106
7562614 AAACGCCCCT
* * *
7562624 AAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGTTAAAAATAAGAGCATTAGCGGTGCT
1 AAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGATGCT
7562689 TTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTA
66 TTTGGTAAAACGCCGCTAAAAATAAGAGCATT-GCGGCGCTA
* *
7562731 AAAAATCAGAGCAATAGCGGCGCTTTTGGTAAAACGTCGCTAAAAATAAGAGCATTAGCGATGCT
1 AAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGATGCT
* *
7562796 TTTGGTAAAACGTCGCTAAAAATAAGAGTATTGCGGCGCT
66 TTTGGTAAAACGCCGCTAAAAATAAGAGCATTGCGGCGCT
7562836 TTTGGTAAAA
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
106 8 0.08
107 90 0.92
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (106 bp):
AAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGATGCT
TTTGGTAAAACGCCGCTAAAAATAAGAGCATTGCGGCGCTA
Found at i:7562848 original size:40 final size:41
Alignment explanation
Indices: 7562726--7562857 Score: 203
Period size: 41 Copynumber: 3.2 Consensus size: 41
7562716 GCATTAGCGG
* *
7562726 CGCTAAAAAATCAGAGCAATAGCGGCGCTTTTGGTAAAACGT
1 CGCT-AAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGT
**
7562768 CGCTAAAAATAAGAGCATTAGCGATGCTTTTGGTAAAACGT
1 CGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGT
*
7562809 CGCTAAAAATAAGAGTATT-GCGGCGCTTTTGGTAAAACGT
1 CGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGT
7562849 CGCTAAAAA
1 CGCTAAAAA
7562858 ATTTAGGGTT
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 28 0.34
41 51 0.61
42 4 0.05
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (41 bp):
CGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGT
Found at i:7562859 original size:148 final size:147
Alignment explanation
Indices: 7562584--7562857 Score: 442
Period size: 148 Copynumber: 1.9 Consensus size: 147
7562574 AAACGCCACT
* *
7562584 AAAAACAGAGCAATAGCGGGGCTTTTGGTAAAACGCCCCTAAAAATAAGAGCATTAGCGGCGCTT
1 AAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCCCTAAAAATAAGAGCATTAGCGACGCTT
* *
7562649 TTGGTAAAACGCCGTTAAAAATAAGAGCATTAGCGGTGCTTTTGGTAAAACGCCGCTAAAAATAA
66 TTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAA
7562714 GAGCATTAGCGGCGCTA
131 GAGCATTAGCGGCGCTA
* * *
7562731 AAAAATCAGAGCAATAGCGGCGCTTTTGGTAAAACGTCGCTAAAAATAAGAGCATTAGCGATGCT
1 AAAAA-CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCCCTAAAAATAAGAGCATTAGCGACGCT
* * *
7562796 TTTGGTAAAACGTCGCTAAAAATAAGAGTATT-GCGGCGCTTTTGGTAAAACGTCGCTAAAAA
65 TTTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
7562858 ATTTAGGGTT
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
147 33 0.28
148 83 0.72
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (147 bp):
AAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCCCTAAAAATAAGAGCATTAGCGACGCTT
TTGGTAAAACGCCGCTAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAA
GAGCATTAGCGGCGCTA
Found at i:7562955 original size:21 final size:22
Alignment explanation
Indices: 7562931--7562974 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
7562921 GGTTTATGTA
*
7562931 TTATGGTTTAAGGGTT-GGGGT
1 TTATGATTTAAGGGTTAGGGGT
7562952 TTATGATTTAAGGGTTAGGGGT
1 TTATGATTTAAGGGTTAGGGGT
7562974 T
1 T
7562975 AGGGGTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (22 bp):
TTATGATTTAAGGGTTAGGGGT
Found at i:7563230 original size:21 final size:21
Alignment explanation
Indices: 7563204--7563247 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7563194 TTATGGTTAG
* *
7563204 GGGATATAGTTTAGGGTTTAA
1 GGGATATACTTTAGGGATTAA
7563225 GGGATATACTTTAGGGATTAA
1 GGGATATACTTTAGGGATTAA
7563246 GG
1 GG
7563248 TTATAGGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34
Consensus pattern (21 bp):
GGGATATACTTTAGGGATTAA
Found at i:7563584 original size:15 final size:15
Alignment explanation
Indices: 7563564--7563610 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
7563554 TCCCCGATTT
7563564 CCCCAACTTCTTCTC
1 CCCCAACTTCTTCTC
*
7563579 CCCCAA---ATT-TC
1 CCCCAACTTCTTCTC
7563590 CCCCAACTTCTTCTC
1 CCCCAACTTCTTCTC
7563605 CCCCAA
1 CCCCAA
7563611 AATTTTTACC
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 8 0.31
12 2 0.08
14 2 0.08
15 14 0.54
ACGTcount: A:0.19, C:0.53, G:0.00, T:0.28
Consensus pattern (15 bp):
CCCCAACTTCTTCTC
Found at i:7563597 original size:26 final size:25
Alignment explanation
Indices: 7563560--7563611 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
7563550 AATTTCCCCG
7563560 ATTTCCCCAACTTCTTCTCCCCCAA
1 ATTTCCCCAACTTCTTCTCCCCCAA
7563585 ATTTCCCCCAACTTCTTCTCCCCCAA
1 ATTT-CCCCAACTTCTTCTCCCCCAA
7563611 A
1 A
7563612 ATTTTTACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.21, C:0.48, G:0.00, T:0.31
Consensus pattern (25 bp):
ATTTCCCCAACTTCTTCTCCCCCAA
Found at i:7569062 original size:26 final size:26
Alignment explanation
Indices: 7568960--7569061 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
7568950 CATGAAATTC
7568960 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7568986 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7569012 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
7569038 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
7569062 TTTATCAATT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7573252 original size:25 final size:26
Alignment explanation
Indices: 7573215--7573266 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7573205 TCAAACATGC
7573215 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
7573241 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
7573266 A
1 A
7573267 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:7574786 original size:26 final size:26
Alignment explanation
Indices: 7574750--7574858 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7574740 CATGAAATTC
7574750 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7574776 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7574802 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
7574828 TTATCATGGAACATTTACCTAA-CTA
1 TTATCATGAAACATTTACCTAACCCA
7574853 TTATCA
1 TTATCA
7574859 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 9 0.11
26 72 0.89
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7575722 original size:183 final size:183
Alignment explanation
Indices: 7575414--7575782 Score: 684
Period size: 183 Copynumber: 2.0 Consensus size: 183
7575404 GATATAGTTC
* *
7575414 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA
7575479 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
7575544 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* * *
7575597 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTTCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA
7575662 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
7575727 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
7575780 CAT
1 CAT
7575783 CTGTTCTAGG
Statistics
Matches: 180, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 180 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGATTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:7576899 original size:273 final size:274
Alignment explanation
Indices: 7576258--7577357 Score: 2051
Period size: 275 Copynumber: 4.0 Consensus size: 274
7576248 CCAACCTTAT
* *
7576258 TTTAAATATTTTAAAGATTCAAAGTATATAAGCTGAAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
7576323 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
7576388 AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
7576453 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
7576518 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
*
7576533 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
7576598 GCAAGATATAATGGATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
7576663 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
7576728 AAAATTAAACTACGATTC-TTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
7576792 GTTTGATTTTAATA
261 GTTTGATTTTAATA
*
7576806 TTTAAATATTTTAAAGATTCAAAGTATATATGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
7576871 GCAAGATATAATGGATCCTCCCTAGGTGTAACAGCGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
7576936 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
7577001 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
7577066 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
* *
7577081 TTTAAATATTTTAAAGATTCGAAGTATATAGGTTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
7577146 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
* * * *
7577211 AAAGATTTGAACATAGTTCTATTGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
7577276 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
7577340 GTTTGATTTTAATA
261 GTTTGATTTTAATA
7577354 TTTA
1 TTTA
7577358 TGATTATTTT
Statistics
Matches: 806, Mismatches: 17, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
273 304 0.38
274 29 0.04
275 473 0.59
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (274 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAAT
GTTTGATTTTAATA
Found at i:7577294 original size:548 final size:548
Alignment explanation
Indices: 7576258--7577357 Score: 2076
Period size: 548 Copynumber: 2.0 Consensus size: 548
7576248 CCAACCTTAT
7576258 TTTAAATATTTTAAAGATTCAAAGTATATAAGCTGAAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAAGCTGAAAACCTGACGGGTTGCCTTATATCGAGCT
7576323 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
7576388 AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
7576453 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
7576518 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTT
261 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTT
*
7576583 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCTTAGGTGTAACAACGCCACGTATGATGAA
326 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAA
7576648 TCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
391 TCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
7576713 TCCAATTTACTTATAAAAATTAAACTACGATTC-TTTTTATATTATTATATTCAAATTACTATTT
456 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTA-TT
7576777 TTTTATATTAATAATGTTTGATTTTAATA
520 TTTTATATTAATAATGTTTGATTTTAATA
* *
7576806 TTTAAATATTTTAAAGATTCAAAGTATATATGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAAGCTGAAAACCTGACGGGTTGCCTTATATCGAGCT
*
7576871 GCAAGATATAATGGATCCTCCCTAGGTGTAACAGCGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
7576936 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
7577001 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
* * *
7577066 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCGAAGTATATAGGTTGGAAACCTGACGGGTT
261 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTT
7577131 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAA
326 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAA
* * * *
7577196 TCTTAAAAAATTCAAAAAGATTTGAACATAGTTCTATTGAGCTCATTTACTATTGAATATTTATT
391 TCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
7577261 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTT
456 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTT
7577326 TTTATATTAATAATGTTTGATTTTAATA
521 TTTATATTAATAATGTTTGATTTTAATA
7577354 TTTA
1 TTTA
7577358 TGATTATTTT
Statistics
Matches: 539, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
548 511 0.95
549 28 0.05
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (548 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAAGCTGAAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTT
GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAA
TCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTT
TTTATATTAATAATGTTTGATTTTAATA
Found at i:7577373 original size:70 final size:69
Alignment explanation
Indices: 7577286--7577445 Score: 257
Period size: 70 Copynumber: 2.3 Consensus size: 69
7577276 AAAATTAAAC
*
7577286 TACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTTA
1 TACGATTATTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTTA
7577351 ATATT
66 ATA-T
* *
7577356 TATGATTATTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTTT
1 TACGATTATTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTTA
*
7577421 TTAT
66 ATAT
*
7577425 TACGATTCTTTTTTTATATTA
1 TACGATT-ATTTTTTATATTA
7577446 ATATGTACTT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
69 7 0.08
70 76 0.92
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (69 bp):
TACGATTATTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTGATTTTA
ATAT
Found at i:7577734 original size:9 final size:9
Alignment explanation
Indices: 7577693--7578082 Score: 132
Period size: 9 Copynumber: 42.4 Consensus size: 9
7577683 ATTTGATATC
*
7577693 ATAATTTAT
1 ATAACTTAT
*
7577702 ATAACTTAC
1 ATAACTTAT
* *
7577711 AAAACGTT-C
1 ATAAC-TTAT
7577720 ATAACTTAT
1 ATAACTTAT
*
7577729 ATAACTTAG
1 ATAACTTAT
*
7577738 ATAA-ATAT
1 ATAACTTAT
*
7577746 ATAACTTAC
1 ATAACTTAT
*
7577755 ATAACTTAC
1 ATAACTTAT
7577764 ATAACTTAAAT
1 ATAACTT--AT
**
7577775 ATATTTTATAT
1 ATA-ACT-TAT
* *
7577786 CATAATTTAC
1 -ATAACTTAT
*
7577796 ATAACTTAC
1 ATAACTTAT
7577805 ATAACTTAT
1 ATAACTTAT
*
7577814 ATAACTTAG
1 ATAACTTAT
*
7577823 ATAA-ATAT
1 ATAACTTAT
* *
7577831 ATAATTTAC
1 ATAACTTAT
*
7577840 ATAA-ATAT
1 ATAACTTAT
* *
7577848 ATATCATAT
1 ATAACTTAT
*
7577857 CATAACTTAC
1 -ATAACTTAT
*
7577867 ATAACTTAC
1 ATAACTTAT
*
7577876 ATAAATATAT
1 ATAACT-TAT
* *
7577886 TTGA--TAT
1 ATAACTTAT
*
7577893 CATAATTTAT
1 -ATAACTTAT
*
7577903 ATAACTTAC
1 ATAACTTAT
* * *
7577912 AAAACGTAC
1 ATAACTTAT
7577921 ATAACTTAT
1 ATAACTTAT
*
7577930 ATAACTTAG
1 ATAACTTAT
*
7577939 ATAA-ATAT
1 ATAACTTAT
*
7577947 ATAACTTAC
1 ATAACTTAT
*
7577956 ATAACTTAC
1 ATAACTTAT
7577965 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
7577978 ATATTTTATAT
1 ATA-ACT-TAT
* *
7577989 CATAATTTAC
1 -ATAACTTAT
*
7577999 ATAACTTAC
1 ATAACTTAT
7578008 ATAACTTAT
1 ATAACTTAT
*
7578017 ATAACTTAG
1 ATAACTTAT
*
7578026 ATAA-ATAT
1 ATAACTTAT
* *
7578034 ATAATTTAC
1 ATAACTTAT
*
7578043 ATAA-ATAT
1 ATAACTTAT
* *
7578051 ATATCATAT
1 ATAACTTAT
*
7578060 CATAACTTAC
1 -ATAACTTAT
*
7578070 ATAACTTAC
1 ATAACTTAT
7578079 ATAA
1 ATAA
7578083 TACTTAAATA
Statistics
Matches: 292, Mismatches: 64, Indels: 50
0.72 0.16 0.12
Matches are distributed among these distances:
7 3 0.01
8 38 0.13
9 194 0.66
10 26 0.09
11 16 0.05
12 10 0.03
13 5 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.39
Consensus pattern (9 bp):
ATAACTTAT
Found at i:7577760 original size:53 final size:52
Alignment explanation
Indices: 7577688--7578083 Score: 289
Period size: 53 Copynumber: 7.7 Consensus size: 52
7577678 AATATATTTG
* * *
7577688 ATATCATAATTTATATAACTTACAAAACGTT-CATAACTTATATAACTTAGATAA
1 ATAT-ATAACTTACATAACTTACATAAC-TTACATAA-TTATATAACTTAGATAA
* * * *
7577742 ATATATAACTTACATAACTTACATAACTTAAATATATTTTATATCATA-AT--
1 ATATATAACTTACATAACTTACATAACTTACATA-ATTATATAACTTAGATAA
* * * * * * *
7577792 TTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAA
1 ATATATAACTTACATAACTTACATAACTTACATAATTATATAACTTAGATAA
* * *
7577844 ATATATATCATATCATAACTTACATAACTTACATAA--ATAT-A-TTTGAT--
1 ATATATAACTTA-CATAACTTACATAACTTACATAATTATATAACTTAGATAA
* * * * *
7577891 AT-CATAATTTATATAACTTACAAAACGTACATAACTTATATAACTTAGATAA
1 ATATATAACTTACATAACTTACATAACTTACATAA-TTATATAACTTAGATAA
* * * *
7577943 ATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATA-AT--
1 ATATATAACTTACATAACTTACAT-A-ACTTACATA-ATTATATAACTTAGATAA
* * * * * * *
7577995 TTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAA
1 ATATATAACTTACATAACTTACATAACTTACATAATTATATAACTTAGATAA
* *
7578047 ATATATATCATATCATAACTTACATAACTTACATAAT
1 ATATATAACTTA-CATAACTTACATAACTTACATAAT
7578084 ACTTAAATAT
Statistics
Matches: 264, Mismatches: 57, Indels: 43
0.73 0.16 0.12
Matches are distributed among these distances:
45 20 0.08
46 5 0.02
47 2 0.01
48 4 0.02
49 21 0.08
50 48 0.18
51 5 0.02
52 43 0.16
53 91 0.34
54 8 0.03
55 16 0.06
56 1 0.00
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.39
Consensus pattern (52 bp):
ATATATAACTTACATAACTTACATAACTTACATAATTATATAACTTAGATAA
Found at i:7577869 original size:71 final size:70
Alignment explanation
Indices: 7577718--7578082 Score: 351
Period size: 71 Copynumber: 5.3 Consensus size: 70
7577708 TACAAAACGT
* * * * * * * *
7577718 TCATAACTTATATAACTTAGATAAATATATAACTTACATAACT-TA-CA-TAACTTAAATATATT
1 TCATAACTTACATAACTTACATAAATATATAACTTAGATAAATATATAATTTACATAAATATATA
*
7577780 TTATA
66 TCATA
* *
7577785 TCATAATTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATAT
1 TCATAACTTACATAACTTACATAA-ATATATAACTTAGATAAATATATAATTTACATAAATATAT
7577850 ATCATA
65 ATCATA
* * * * *
7577856 TCATAACTTACATAACTTACATAAATATAT---TT-GAT--AT-CATAATTTATATAACTTACAA
1 TCATAACTTACATAACTTACATAAATATATAACTTAGATAAATATATAATTTACATAA-ATATAT
* *
7577914 AACGTA
65 ATCATA
* * * * * *
7577920 -CATAACTTATATAACTTAGATAAATATATAACTTACATAACTTACATAA--TACTTAAATATAT
1 TCATAACTTACATAACTTACATAAATATATAACTTAGATAA-ATATATAATTTACATAAATATAT
* *
7577982 TTTATA
65 ATCATA
* *
7577988 TCATAATTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATAT
1 TCATAACTTACATAACTTACATAA-ATATATAACTTAGATAAATATATAATTTACATAAATATAT
7578053 ATCATA
65 ATCATA
7578059 TCATAACTTACATAACTTACATAA
1 TCATAACTTACATAACTTACATAA
7578083 TACTTAAATA
Statistics
Matches: 237, Mismatches: 44, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
63 39 0.16
64 9 0.04
66 5 0.02
67 25 0.11
68 21 0.09
69 33 0.14
70 22 0.09
71 83 0.35
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.39
Consensus pattern (70 bp):
TCATAACTTACATAACTTACATAAATATATAACTTAGATAAATATATAATTTACATAAATATATA
TCATA
Found at i:7577949 original size:17 final size:17
Alignment explanation
Indices: 7577927--7578082 Score: 93
Period size: 17 Copynumber: 8.9 Consensus size: 17
7577917 GTACATAACT
*
7577927 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
7577944 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
7577962 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
7577977 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* *
7577996 TACATAACTTACATAACT
1 TATATAACTTACATAA-A
*
7578014 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
7578031 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
7578048 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
7578067 TACATAACTTACATAA
1 TATATAACTTACATAA
7578083 TACTTAAATA
Statistics
Matches: 105, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.38
18 40 0.38
19 14 0.13
20 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:7577963 original size:201 final size:203
Alignment explanation
Indices: 7577665--7578082 Score: 799
Period size: 203 Copynumber: 2.1 Consensus size: 203
7577655 ATAAAAAATG
*
7577665 TACATAA--TACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTTCATAACTTA
1 TACATAACTTACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTA
7577728 TATAACTTAGATAAATATATAACTTACATAACTTACAT-A-ACTTAAATATATTTTATATCATAA
66 TATAACTTAGATAAATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAA
7577791 TTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATA
131 TTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATA
7577856 TCATAACT
196 TCATAACT
7577864 TACATAACTTACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTA
1 TACATAACTTACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTA
7577929 TATAACTTAGATAAATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAA
66 TATAACTTAGATAAATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAA
7577994 TTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATA
131 TTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATA
7578059 TCATAACT
196 TCATAACT
7578067 TACATAACTTACATAA
1 TACATAACTTACATAA
7578083 TACTTAAATA
Statistics
Matches: 214, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
199 7 0.03
201 93 0.43
202 1 0.00
203 113 0.53
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (203 bp):
TACATAACTTACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACTTA
TATAACTTAGATAAATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAA
TTTACATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATA
TCATAACT
Found at i:7578021 original size:87 final size:89
Alignment explanation
Indices: 7577853--7578046 Score: 261
Period size: 87 Copynumber: 2.2 Consensus size: 89
7577843 AATATATATC
**
7577853 ATATCATAACTTACATAACTTACATAAATATATTTGATATCATAATTTATATAACTTACAAAACG
1 ATAT-ATAACTTACATAACTTACATAAATATATTAAATATCATAATTTATATAACTTACAAAACG
7577918 TACATAACTTATATAACTTAGATAA
65 TACATAACTTATATAACTTAGATAA
* * * *
7577943 ATATATAACTTACATAACTTACAT-AATA-CTTAAATAT-AT-TTTATATCATAATTTACATAAC
1 ATATATAACTTACATAACTTACATAAATATATTAAATATCATAATT-TAT-ATAACTTACAAAAC
*
7578004 TTACATAACTTATATAACTTAGATAA
64 GTACATAACTTATATAACTTAGATAA
*
7578030 ATATATAATTTACATAA
1 ATATATAACTTACATAA
7578047 ATATATATCA
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
85 2 0.02
86 5 0.05
87 59 0.63
88 4 0.04
89 20 0.21
90 4 0.04
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (89 bp):
ATATATAACTTACATAACTTACATAAATATATTAAATATCATAATTTATATAACTTACAAAACGT
ACATAACTTATATAACTTAGATAA
Found at i:7581288 original size:26 final size:26
Alignment explanation
Indices: 7581252--7581409 Score: 246
Period size: 26 Copynumber: 6.1 Consensus size: 26
7581242 GAAATTCTTA
7581252 CATGAAACATTTACCTAA-CTCATTAT
1 CATGAAACATTTACCTAACCT-ATTAT
*
7581278 CATGAAACATTTACCTAACCCATTAT
1 CATGAAACATTTACCTAACCTATTAT
*
7581304 CATGGAACATTTACCTAACCTATTAT
1 CATGAAACATTTACCTAACCTATTAT
* *
7581330 CATGAAGCATTTACCTAACCCATTAT
1 CATGAAACATTTACCTAACCTATTAT
*
7581356 CATGGAACATTTACCTAACCTATTAT
1 CATGAAACATTTACCTAACCTATTAT
*
7581382 CATGGAACATTTACCTAACCTATTAT
1 CATGAAACATTTACCTAACCTATTAT
7581408 CA
1 CA
7581410 ATTTGTATCA
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
26 121 0.99
27 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
CATGAAACATTTACCTAACCTATTAT
Found at i:7581381 original size:78 final size:78
Alignment explanation
Indices: 7581252--7581409 Score: 280
Period size: 78 Copynumber: 2.0 Consensus size: 78
7581242 GAAATTCTTA
*
7581252 CATGAAACATTTACCTAACTCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTA
1 CATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTA
7581317 CCTAACCTATTAT
66 CCTAACCTATTAT
* * *
7581330 CATGAAGCATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTA
1 CATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTA
7581395 CCTAACCTATTAT
66 CCTAACCTATTAT
7581408 CA
1 CA
7581410 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (78 bp):
CATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTA
CCTAACCTATTAT
Found at i:7587033 original size:31 final size:31
Alignment explanation
Indices: 7586987--7587053 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
7586977 TGGTTGTATT
* *
7586987 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
7587018 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
7587049 TTTTA
1 TTTTA
7587054 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:7587154 original size:43 final size:43
Alignment explanation
Indices: 7587127--7587476 Score: 529
Period size: 43 Copynumber: 8.1 Consensus size: 43
7587117 GTAAAAAAAG
*
7587127 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCTCAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
7587170 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
7587213 CGCCGCTAAAAGCCTTGGCCTCTAGCAGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
7587256 CGCCGCTAAAAGCCTTGGCCTCTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
7587299 CGCCGCTAAAAGCCTTGACCTCTAGCGGCGCTTTCCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
7587342 CCCCGCTAAAAGCCTTGACCTGTAGCGGCGCTTTCCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
7587385 CGCCGCTAAAAGCCTTGACCTTTAGTGGTGCTTTCCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
7587428 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCCAATAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCG-CTTTTCCC-ACAAA
7587473 CGCC
1 CGCC
7587477 ACAAATTTTT
Statistics
Matches: 285, Mismatches: 20, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
43 272 0.95
44 6 0.02
45 7 0.02
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:7592233 original size:132 final size:131
Alignment explanation
Indices: 7591985--7592267 Score: 370
Period size: 132 Copynumber: 2.2 Consensus size: 131
7591975 TGGTGAATTC
* * * *
7591985 ACAGATCTTATCTCCCTAAATAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCGTGG
1 ACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGATGAATCTTATCTTCCCGAGG
* * * *
7592050 TAGTAGGGAAGCAGATTTAGGCCACTAGCCTTATCTCCTTAAGCAGTAGTGGAGAAGGCTGAAGA
66 TAGCAAGGAAGCAGATTTAAGCCACTAGCCTTATCTCCTTAAGCAGCAGTGGAGAAGGCTGAAGA
7592115 TT
131 -T
* * * *
7592117 GCAGATCTTATCTCCCTAAGCAGTAGTGGGGTAGATCAAAGACGATGAATCTTATCTTCCCGAGG
1 ACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGATGAATCTTATCTTCCCGAGG
* * ** * * *
7592182 TAGCAAGGAAGCAGATTTAAGCCACTAGCCTTATCTCTTTGAGTTGCAGTGGAGCAGGTTGAATA
66 TAGCAAGGAAGCAGATTTAAGCCACTAGCCTTATCTCCTTAAGCAGCAGTGGAGAAGGCTGAAGA
7592247 T
131 T
7592248 ACA-AGTCTTATCTCCCTAAA
1 ACAGA-TCTTATCTCCCTAAA
7592268 ATTACAGTGA
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
130 1 0.01
131 17 0.13
132 111 0.86
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (131 bp):
ACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGATGAATCTTATCTTCCCGAGG
TAGCAAGGAAGCAGATTTAAGCCACTAGCCTTATCTCCTTAAGCAGCAGTGGAGAAGGCTGAAGA
T
Found at i:7592334 original size:45 final size:44
Alignment explanation
Indices: 7592223--7592511 Score: 117
Period size: 44 Copynumber: 6.5 Consensus size: 44
7592213 TATCTCTTTG
* * *
7592223 AGTTGCAGTGGAGCAGGTTGAATATACAAGTCTTATCTCCCTAA
1 AGTTGCAGTGGAACAGGTTGAAGATACAAATCTTATCTCCCTAA
* * * *
7592267 AATTACAGT-GAAGCAGGCTGAAGATAGCAAATCTTA-CTTCCCTGA
1 AGTTGCAGTGGAA-CAGGTTGAAGATA-CAAATCTTATC-TCCCTAA
* * * *
7592312 AGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTCATCTCTCTAA
1 AGTTGCAGTGGAACAGGTTGAAG----A-TACAAATCTTATCTCCCTAA
* ** * * * *
7592361 AGTTACAGTAGG-GTAGATT-AA-A-ACAAACCTTATCTCCTTGA
1 AGTTGCAGT-GGAACAGGTTGAAGATACAAATCTTATCTCCCTAA
* * * * * * * *
7592402 TGTTGCAGTGGAGCAGGTTAAAG-TCTCTAGTCTTATCTCCTTGA
1 AGTTGCAGTGGAACAGGTTGAAGAT-ACAAATCTTATCTCCCTAA
* ** * ** *
7592446 AGTTGCAGTGGAGCAGACTAAAGCCAC-AATCCTTATCTCCCTGA
1 AGTTGCAGTGGAACAGGTTGAAGATACAAAT-CTTATCTCCCTAA
*
7592490 AGTTGCAGTGGAGCAGGTTGAA
1 AGTTGCAGTGGAACAGGTTGAA
7592512 ATTACCAATT
Statistics
Matches: 185, Mismatches: 42, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
40 2 0.01
41 25 0.14
42 2 0.01
43 5 0.03
44 86 0.46
45 29 0.16
46 3 0.02
48 2 0.01
49 26 0.14
50 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
AGTTGCAGTGGAACAGGTTGAAGATACAAATCTTATCTCCCTAA
Found at i:7592439 original size:44 final size:44
Alignment explanation
Indices: 7592383--7592508 Score: 164
Period size: 44 Copynumber: 2.9 Consensus size: 44
7592373 GTAGATTAAA
* * *
7592383 ACAAACCTTATCTCCTTGATGTTGCAGTGGAGCAGGTTAAAGTC
1 ACAATCCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCC
* * **
7592427 TCTAGT-CTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGCC
1 AC-AATCCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCC
*
7592471 ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
1 ACAATCCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTT
7592509 GAAATTACCA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 2 0.03
44 65 0.96
45 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29
Consensus pattern (44 bp):
ACAATCCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCC
Found at i:7593840 original size:3 final size:3
Alignment explanation
Indices: 7593832--7594017 Score: 92
Period size: 3 Copynumber: 62.7 Consensus size: 3
7593822 AGTTTTATAT
* * * * *
7593832 TTA TTA TTA TTG TTA -TA TTTA TTA TTT TTT TTA GTA TTT TTA TT-
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
7593876 TCTG TTA TTG TTG TTA CTA TTA TTT TTA TTA GTA TTG TTA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * ***
7593922 TTA TTA TTA CCA CTA TTA TTA TTA TT- TTA TCA CTA CCG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * *
7593969 TTA -TA GAA TTA TTA GTA TTA TTA TTA CTA TTA TTT TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7594016 TT
1 TT
7594018 TTTTAAAACC
Statistics
Matches: 135, Mismatches: 42, Indels: 12
0.71 0.22 0.06
Matches are distributed among these distances:
2 7 0.05
3 125 0.93
4 3 0.02
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7593937 original size:42 final size:42
Alignment explanation
Indices: 7593851--7593947 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
7593841 TTGTTATATT
* * * * ***
7593851 TATTATTTTTTTTAGTATTTTTATTTCTGTTATTGTTGTTAC
1 TATTATTTTTATTAGTATTGTTATTTCTATTATTATTACCAC
7593893 TATTATTTTTATTAGTATTGTTATTAT-TATTATTATTACCAC
1 TATTATTTTTATTAGTATTGTTATT-TCTATTATTATTACCAC
*
7593935 TATTATTATTATT
1 TATTATTTTTATT
7593948 TTATCACTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.24, C:0.05, G:0.06, T:0.65
Consensus pattern (42 bp):
TATTATTTTTATTAGTATTGTTATTTCTATTATTATTACCAC
Found at i:7594133 original size:21 final size:20
Alignment explanation
Indices: 7594109--7594148 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
7594099 ATTTCCTTTG
7594109 TTATTTCAATTATTATTTTAT
1 TTATTTCAATT-TTATTTTAT
7594130 TTATTTCAATTTTATTTTA
1 TTATTTCAATTTTATTTTA
7594149 CTTTTGTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTTCAATTTTATTTTAT
Found at i:7594185 original size:15 final size:14
Alignment explanation
Indices: 7594155--7594193 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
7594145 TTTACTTTTG
7594155 TCCTCATTATTATTA
1 TCCT-ATTATTATTA
*
7594170 TCTTATTATATATTA
1 TCCTATTAT-TATTA
7594185 TCCTATTAT
1 TCCTATTAT
7594194 GTACCTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.56
Consensus pattern (14 bp):
TCCTATTATTATTA
Found at i:7594338 original size:62 final size:62
Alignment explanation
Indices: 7594199--7594326 Score: 238
Period size: 62 Copynumber: 2.1 Consensus size: 62
7594189 ATTATGTACC
* *
7594199 TATTCATTTATTTATTTATGTCTTTATATACCTGCAAGTTATGTTCTTTGTTATTATTATTG
1 TATTCATTTATTTATTTATGTCTTTATATACCTGCAAGTTATGTTATTCGTTATTATTATTG
7594261 TATTCATTTATTTATTTATGTCTTTATATACCTGCAAGTTATGTTATTCGTTATTATTATTG
1 TATTCATTTATTTATTTATGTCTTTATATACCTGCAAGTTATGTTATTCGTTATTATTATTG
7594323 TATT
1 TATT
7594327 TGCATTATTA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (62 bp):
TATTCATTTATTTATTTATGTCTTTATATACCTGCAAGTTATGTTATTCGTTATTATTATTG
Found at i:7595746 original size:40 final size:36
Alignment explanation
Indices: 7595653--7595725 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
7595643 TTGGTCCTGT
7595653 GTTAGAATTCCAGATGTATTACAATTCTAAGTGGTG
1 GTTAGAATTCCAGATGTATTACAATTCTAAGTGGTG
7595689 GTTAGAATTCCAGATGTATTACAATTCTAAGTGGTG
1 GTTAGAATTCCAGATGTATTACAATTCTAAGTGGTG
7595725 G
1 G
7595726 GTGGTTAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (36 bp):
GTTAGAATTCCAGATGTATTACAATTCTAAGTGGTG
Found at i:7597962 original size:2 final size:2
Alignment explanation
Indices: 7597955--7597991 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
7597945 AAACCATAAC
* *
7597955 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7597992 GTATTGTACC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:7600362 original size:46 final size:46
Alignment explanation
Indices: 7600295--7600464 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
7600285 TAACCCGCCC
* *
7600295 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
7600341 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
7600389 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
7600434 TAGGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
7600465 AGATGCTCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 57 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:7600413 original size:93 final size:93
Alignment explanation
Indices: 7600300--7600470 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
7600290 CGCCCTAAGT
* * * *
7600300 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7600365 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* *
7600393 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7600458 CGAGTTCAGATGC
66 CGAGTTCAGATGC
7600471 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:7602177 original size:19 final size:20
Alignment explanation
Indices: 7602142--7602184 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
7602132 CAGAGGTAAT
*
7602142 CTTT-TAAAATTTCTTTC-A
1 CTTTCTAAAATTTATTTCTA
*
7602160 CTTTCTAAATTTTATTTCTA
1 CTTTCTAAAATTTATTTCTA
7602180 CTTTC
1 CTTTC
7602185 GTTGGTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (20 bp):
CTTTCTAAAATTTATTTCTA
Found at i:7603244 original size:110 final size:111
Alignment explanation
Indices: 7603042--7603263 Score: 356
Period size: 110 Copynumber: 2.0 Consensus size: 111
7603032 TTGGCTCTTA
* * *
7603042 CATTGTAGGGGAGAAAAGATGAGCCTAGGAAATTTTTGTATACTTTTTGTCAATTGAAGACTCGT
1 CATTGCAGGGGACAAAAGATGAGCCTAGGAAATTTTTGTATACTTTTTGTCAATTAAAGACTCGT
* *
7603107 TCATGATCTTTGCAACCTCTATCAAATATCGAGTGTGATGCGAACC
66 TCATGATCTTTGCAACCTCTATCAAATATCAAGTGTGATACGAACC
* * *
7603153 CATTGCAGGGGACAAAAGATGAGCCTGGGAAATTTTTGTATA-TTTTTTTCAATTAAAGGCTCGT
1 CATTGCAGGGGACAAAAGATGAGCCTAGGAAATTTTTGTATACTTTTTGTCAATTAAAGACTCGT
*
7603217 TCATGATCTTTGCAACCTCTATCAAATATTAAGTGTGATACGAACC
66 TCATGATCTTTGCAACCTCTATCAAATATCAAGTGTGATACGAACC
7603263 C
1 C
7603264 CCTTATGCTA
Statistics
Matches: 102, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
110 63 0.62
111 39 0.38
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (111 bp):
CATTGCAGGGGACAAAAGATGAGCCTAGGAAATTTTTGTATACTTTTTGTCAATTAAAGACTCGT
TCATGATCTTTGCAACCTCTATCAAATATCAAGTGTGATACGAACC
Found at i:7605256 original size:105 final size:104
Alignment explanation
Indices: 7604921--7605271 Score: 461
Period size: 105 Copynumber: 3.4 Consensus size: 104
7604911 CCAGCACTAG
* * * * * * *
7604921 ATAGGTTGTGATCTTAAATTAGTTAACATTTATAAAATCAACAGTGAAA-GTAAGTTATCGAGCT
1 ATAGGTTGCGATCTTAAATCAGCTAACCTTTATAAAATCAACTGT-AAACGTAGGTCATCGAGCT
*
7604985 GTTTAGAGTTGCGATCTTAATTCAGCTAACTCAAATATGA
65 GTTTAGAGTTGCGATCTTAAATCAGCTAACTCAAATATGA
* * * * *
7605025 ATAGGTTGCAATCTTAAATTAGCTAACCTTTATATAATCAGCTATAAACGTAGGTCATCGAGCTG
1 ATAGGTTGCGATCTTAAATCAGCTAACCTTTATAAAATCAACTGTAAACGTAGGTCATCGAGCTG
*
7605090 TTTAGGAGTTACGATCTTAAATCAGCTAACTCAAATATGA
66 TTTA-GAGTTGCGATCTTAAATCAGCTAACTCAAATATGA
*
7605130 ATAGGTTGCGATCTTAAATCAGCTAACCTTTATAAAATCAATTGTAAACGTAGGTCATCGAGCTG
1 ATAGGTTGCGATCTTAAATCAGCTAACCTTTATAAAATCAACTGTAAACGTAGGTCATCGAGCTG
* * * *
7605195 TTTAGAAGTTGTGATCTTAAATCAACTAACTCAAAGATAA
66 TTTAG-AGTTGCGATCTTAAATCAGCTAACTCAAATATGA
* * * *
7605235 ATAGGTTGCGATCTTAGATCAGTTAACTTTTTTAAAA
1 ATAGGTTGCGATCTTAAATCAGCTAACCTTTATAAAA
7605272 GTAGGATTTG
Statistics
Matches: 217, Mismatches: 27, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
103 3 0.01
104 56 0.26
105 158 0.73
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (104 bp):
ATAGGTTGCGATCTTAAATCAGCTAACCTTTATAAAATCAACTGTAAACGTAGGTCATCGAGCTG
TTTAGAGTTGCGATCTTAAATCAGCTAACTCAAATATGA
Found at i:7638318 original size:2 final size:2
Alignment explanation
Indices: 7638311--7638348 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
7638301 CATATTCTTT
*
7638311 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7638349 TTTATTCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7650002 original size:45 final size:45
Alignment explanation
Indices: 7649951--7650296 Score: 186
Period size: 45 Copynumber: 7.7 Consensus size: 45
7649941 TATCATCAGC
*
7649951 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGAT
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGATTAAACATACCCGAT
* * * ** *** ****
7649996 CTTATCTTCACTGAGCAGGAGTGAAGCAAATCGAGTTTTGGAGAAT
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGATTAAACATACCCG-AT
* * * ** *
7650042 CTTATCTCCACGT-A-CCGGCGATGGAGCAGATTCCA-AT-CACCAAT
1 CTTATCTTCAC-TAAGCAGGAG-TGGAGCAGATTAAACATAC-CCGAT
* *
7650086 CTTATCTTCATTAAGCAGGAGTGGAGCAGGTTAAACATACCCGAT
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGATTAAACATACCCGAT
* * * ** *** ****
7650131 CTTATCTTCACTGAGCAAGAGTGAAGCAGATCGAGTTTTGGAGAAT
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGATTAAACATACCCG-AT
* * * ** *
7650177 CTTATCTCCACGT-A-CCGGCGATGGAGCAGATTCCA-AT-CACCAAT
1 CTTATCTTCAC-TAAGCAGGAG-TGGAGCAGATTAAACATAC-CCGAT
*
7650221 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGAT
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGATTAAACATACCCGAT
* *
7650266 CTTATCTTCACTGAGCAGGAGTGAAGCAGAT
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGAT
7650297 CGAGTTTTGG
Statistics
Matches: 212, Mismatches: 73, Indels: 32
0.67 0.23 0.10
Matches are distributed among these distances:
43 2 0.01
44 47 0.22
45 116 0.55
46 45 0.21
47 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (45 bp):
CTTATCTTCACTAAGCAGGAGTGGAGCAGATTAAACATACCCGAT
Found at i:7650193 original size:135 final size:135
Alignment explanation
Indices: 7649951--7650654 Score: 978
Period size: 135 Copynumber: 5.2 Consensus size: 135
7649941 TATCATCAGC
7649951 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
*
7650016 GTGAAGCAAATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
66 GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
7650081 CCAAT
131 CCAAT
* *
7650086 CTTATCTTCATTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAAGA
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
7650151 GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
66 GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
7650216 CCAAT
131 CCAAT
7650221 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
*
7650286 GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGACGATGGAGCAGATTCCAATCA
66 GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
* *
7650351 TCAAC
131 CCAAT
* * * * * * * *
7650356 CTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATATACCAGATCTTATCTTCATTAAGAAGGA
1 CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
* * ** *
7650421 GTGAAGCAGATTGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATTAAACAGATTCCAATCA
66 GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
* *
7650486 TC-AG
131 CCAAT
* * * * * ** * *
7650490 CTTTATCTTCACTGAGCAGGAGTGGAACTGGCTAAATATACTAGGTCTTATCTTCGCTGAGCAGG
1 C-TTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGG
* * * * * * * * * * * * * * *
7650555 AGCGGAGCAGACCAAATTTCGGTGAATCTTATCTCCATGGATCGACAATGAAGCAGATTTCAACC
65 AGTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATC
7650620 ACCAAT
130 ACCAAT
*
7650626 CTTATCTTCACTAAGCAGGAGTAGAGCAG
1 CTTATCTTCACTAAGCAGGAGTGGAGCAG
7650655 ATCAGATTTC
Statistics
Matches: 513, Mismatches: 54, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
134 2 0.00
135 509 0.99
136 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (135 bp):
CTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAACATACCCGATCTTATCTTCACTGAGCAGGA
GTGAAGCAGATCGAGTTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCAATCA
CCAAT
Found at i:7652335 original size:2 final size:2
Alignment explanation
Indices: 7652330--7652368 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7652320 ACTTATAACT
7652330 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7652369 GTTTTTTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7653462 original size:26 final size:26
Alignment explanation
Indices: 7653425--7653533 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7653415 TGATACAAAT
7653425 TGATAA-AGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7653450 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7653476 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7653502 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7653528 TGATAA
1 TGATAA
7653534 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 6 0.07
26 75 0.93
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7660386 original size:14 final size:15
Alignment explanation
Indices: 7660350--7660386 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7660340 CATAAATATT
7660350 TATATT-TAATGTAA
1 TATATTATAATGTAA
7660364 TATTATTATAAT-TAA
1 TA-TATTATAATGTAA
7660379 TATATTAT
1 TATATTAT
7660387 TTTTCTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 9 0.43
16 4 0.19
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TATATTATAATGTAA
Found at i:7660387 original size:20 final size:20
Alignment explanation
Indices: 7660349--7660387 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7660339 ACATAAATAT
* *
7660349 TTATATTTAATGTAATATTA
1 TTATAATTAATATAATATTA
*
7660369 TTATAATTAATATATTATT
1 TTATAATTAATATAATATT
7660388 TTTCTTTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TTATAATTAATATAATATTA
Found at i:7660682 original size:10 final size:10
Alignment explanation
Indices: 7660667--7660713 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
7660657 ATATTCAAAT
7660667 AAATATATAA
1 AAATATATAA
7660677 AAATATATAA
1 AAATATATAA
* * *
7660687 ATATTTTTAA
1 AAATATATAA
*
7660697 AAATATATGA
1 AAATATATAA
7660707 AAATATA
1 AAATATA
7660714 ATAACAAAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (10 bp):
AAATATATAA
Found at i:7660691 original size:30 final size:30
Alignment explanation
Indices: 7660655--7660713 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
7660645 CTAATTTTAA
7660655 AAATA-TTCAAATAAATATATAAAAATATAT
1 AAATATTTCAAA-AAATATATAAAAATATAT
** *
7660685 AAATATTTTTAAAAATATATGAAAATATA
1 AAATATTTCAAAAAATATATAAAAATATA
7660714 ATAACAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (30 bp):
AAATATTTCAAAAAATATATAAAAATATAT
Found at i:7665554 original size:27 final size:28
Alignment explanation
Indices: 7665510--7665565 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
7665500 CTTGAACTAT
* *
7665510 AACTTCTTTTTTTAATTTTGGTACTTGA
1 AACTTCTTTTTCTAATTTTAGTACTTGA
*
7665538 AACTT-TTTTTCTCATTTTAGTACTTGA
1 AACTTCTTTTTCTAATTTTAGTACTTGA
7665565 A
1 A
7665566 TTATCATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.55
Consensus pattern (28 bp):
AACTTCTTTTTCTAATTTTAGTACTTGA
Found at i:7670762 original size:21 final size:21
Alignment explanation
Indices: 7670738--7670779 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7670728 CGAGGCACTA
7670738 ATGATTTATCGATTGGCTCTG
1 ATGATTTATCGATTGGCTCTG
7670759 ATGATTTATCGATTGGCTCTG
1 ATGATTTATCGATTGGCTCTG
7670780 CTAAAACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.24, T:0.43
Consensus pattern (21 bp):
ATGATTTATCGATTGGCTCTG
Found at i:7672823 original size:92 final size:92
Alignment explanation
Indices: 7672663--7672844 Score: 292
Period size: 92 Copynumber: 2.0 Consensus size: 92
7672653 TTTTGTGCCT
* * *
7672663 TTTAAGGGGTCTACGACCGCTTAACCCTTATTTATTCTTACTATATGCTAAAATCTTTTCCACGA
1 TTTAAGGGGTCTACGACCGCTCAACCCTTATTTATTCTTACTATATGCTAAAAGCTTTTCCACAA
7672728 TTTTAACTGAGGCTAAAGAACGAAATC
66 TTTTAACTGAGGCTAAAGAACGAAATC
* * * *
7672755 TTTAAGGGGTCTACGACCTCTCAACCCTTATTTATTCTTACTATATGTTGAAGGCTTTTCCACAA
1 TTTAAGGGGTCTACGACCGCTCAACCCTTATTTATTCTTACTATATGCTAAAAGCTTTTCCACAA
*
7672820 TTTTAACTGAGTCTAAAGAACGAAA
66 TTTTAACTGAGGCTAAAGAACGAAA
7672845 CTTAATATGG
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 82 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (92 bp):
TTTAAGGGGTCTACGACCGCTCAACCCTTATTTATTCTTACTATATGCTAAAAGCTTTTCCACAA
TTTTAACTGAGGCTAAAGAACGAAATC
Found at i:7675344 original size:21 final size:20
Alignment explanation
Indices: 7675316--7675354 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
7675306 TTTGGGATTA
7675316 AAATATGAAAATGATAATCC
1 AAATATGAAAATGATAATCC
7675336 AAATGATGAAAATGATAAT
1 AAAT-ATGAAAATGATAAT
7675355 TATTTTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.13, T:0.26
Consensus pattern (20 bp):
AAATATGAAAATGATAATCC
Found at i:7677796 original size:19 final size:18
Alignment explanation
Indices: 7677767--7677819 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
7677757 AATATTAAAT
7677767 TAAATTATTTTTAAAAAA
1 TAAATTATTTTTAAAAAA
*
7677785 TAAATTATTTTTTAAAAA
1 TAAATTATTTTTAAAAAA
*
7677803 T-TA-T-TTTTTAAAAAA
1 TAAATTATTTTTAAAAAA
7677818 TA
1 TA
7677820 TTTTACTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 11 0.35
16 1 0.03
17 1 0.03
18 18 0.58
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAATTATTTTTAAAAAA
Found at i:7677816 original size:15 final size:14
Alignment explanation
Indices: 7677786--7677823 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
7677776 TTTAAAAAAT
7677786 AAATTATTTTTTAA
1 AAATTATTTTTTAA
7677800 AAATTATTTTTTAA
1 AAATTATTTTTTAA
*
7677814 AAAATATTTT
1 AAATTATTTT
7677824 ACTGTATCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AAATTATTTTTTAA
Found at i:7683681 original size:9 final size:9
Alignment explanation
Indices: 7683663--7683719 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
7683653 TTTGGTTAAA
7683663 AATTAACCG
1 AATTAACCG
*
7683672 AATTACCCG
1 AATTAACCG
7683681 AATTAACCG
1 AATTAACCG
7683690 AATTAACCG
1 AATTAACCG
*
7683699 -ATTACCCG
1 AATTAACCG
*
7683707 AATTACCCG
1 AATTAACCG
7683716 AATT
1 AATT
7683720 GAATCACTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
8 7 0.16
9 37 0.84
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:7683708 original size:26 final size:27
Alignment explanation
Indices: 7683663--7683719 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
7683653 TTTGGTTAAA
7683663 AATTAACCGAATTACCCGAATTAACCG
1 AATTAACCGAATTACCCGAATTAACCG
*
7683690 AATTAACCG-ATTACCCGAATTACCCG
1 AATTAACCGAATTACCCGAATTAACCG
7683716 AATT
1 AATT
7683720 GAATCACTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.25
Consensus pattern (27 bp):
AATTAACCGAATTACCCGAATTAACCG
Found at i:7683749 original size:17 final size:17
Alignment explanation
Indices: 7683727--7683824 Score: 70
Period size: 17 Copynumber: 5.4 Consensus size: 17
7683717 ATTGAATCAC
7683727 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
7683744 TACATAAGACTTTGAATCAC
1 TACAT-A-A-TTAAAAACAT
*
7683764 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
* * *
7683781 TACATAAGTCTATGAATCAC
1 TACATAA-T-TA-AAAACAT
7683801 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
7683818 TACATAA
1 TACATAA
7683825 GTCTTGAAAT
Statistics
Matches: 59, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
17 28 0.47
18 5 0.08
19 5 0.08
20 21 0.36
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:7683846 original size:37 final size:36
Alignment explanation
Indices: 7683718--7683832 Score: 194
Period size: 37 Copynumber: 3.1 Consensus size: 36
7683708 ATTACCCGAA
*
7683718 TTGAATCACTACATAATTAAAAACATTACATAAGAC
1 TTGAATCACTACATAATTAAAAACATTACATAAGTC
*
7683754 TTTGAATCACTACATAATTAAAAATATTACATAAGTC
1 -TTGAATCACTACATAATTAAAAACATTACATAAGTC
7683791 TATGAATCACTACATAATTAAAAACATTACATAAGTC
1 T-TGAATCACTACATAATTAAAAACATTACATAAGTC
7683828 TTGAA
1 TTGAA
7683833 ATTAACACTT
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
36 5 0.07
37 69 0.93
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (36 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTC
Found at i:7686387 original size:19 final size:19
Alignment explanation
Indices: 7686363--7686401 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7686353 ATCTTAAACT
7686363 AAATAAATGACAACAATAA
1 AAATAAATGACAACAATAA
* * *
7686382 AAATAATTTACAGCAATAA
1 AAATAAATGACAACAATAA
7686401 A
1 A
7686402 TTACAGTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (19 bp):
AAATAAATGACAACAATAA
Found at i:7687516 original size:9 final size:9
Alignment explanation
Indices: 7687488--7687545 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
7687478 GCTATGATAC
*
7687488 TTTTGAAGG
1 TTTTGAAGA
*
7687497 TTTTGGGAGA
1 TTTT-GAAGA
7687507 TTTTGAAGA
1 TTTTGAAGA
*
7687516 TTTTGAAGG
1 TTTTGAAGA
7687525 TTTTGAGAGA
1 TTTTGA-AGA
7687535 -TTTGAA-A
1 TTTTGAAGA
7687542 TTTT
1 TTTT
7687546 CAATTAGGGG
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
7 1 0.02
8 4 0.10
9 27 0.66
10 9 0.22
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (9 bp):
TTTTGAAGA
Found at i:7687528 original size:28 final size:26
Alignment explanation
Indices: 7687488--7687545 Score: 89
Period size: 28 Copynumber: 2.2 Consensus size: 26
7687478 GCTATGATAC
*
7687488 TTTTGAAGGTTTTGGGAGATTTTGAAGA
1 TTTTGAAGGTTTTGAGAGA-TTTGAA-A
7687516 TTTTGAAGGTTTTGAGAGATTTGAAA
1 TTTTGAAGGTTTTGAGAGATTTGAAA
7687542 TTTT
1 TTTT
7687546 CAATTAGGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.17
27 6 0.21
28 18 0.62
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (26 bp):
TTTTGAAGGTTTTGAGAGATTTGAAA
Found at i:7687722 original size:13 final size:13
Alignment explanation
Indices: 7687704--7687737 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7687694 ATTTGTATTG
*
7687704 GGTTGGGTAATTA
1 GGTTGGGTAAATA
*
7687717 GGTTGGGTAAATG
1 GGTTGGGTAAATA
7687730 GGTTGGGT
1 GGTTGGGT
7687738 TGGGTTGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.35
Consensus pattern (13 bp):
GGTTGGGTAAATA
Found at i:7688126 original size:5 final size:5
Alignment explanation
Indices: 7688116--7688142 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7688106 TTTAAGCCTT
7688116 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
7688143 GGTGTTTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:7688954 original size:19 final size:21
Alignment explanation
Indices: 7688910--7688959 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
7688900 TCATCACCTA
*
7688910 AAAATTTAAAAAATACTATAT
1 AAAATATAAAAAATACTATAT
*
7688931 AAAATCTAAAAAATAC-A-AT
1 AAAATATAAAAAATACTATAT
*
7688950 TAAATATAAA
1 AAAATATAAA
7688960 TTAATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 10 0.38
20 1 0.04
21 15 0.58
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATATAAAAAATACTATAT
Found at i:7704969 original size:2 final size:2
Alignment explanation
Indices: 7704962--7704988 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7704952 AAGGCCCTAT
7704962 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7704989 CTGATTCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7712169 original size:40 final size:40
Alignment explanation
Indices: 7712111--7712189 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
7712101 TAATTTGCAT
* *
7712111 TCTGTGTCTGATTAGGCTAAGGCCCTAATATATTTCTGAC
1 TCTGTATCTGATTAGGCTAAGGCCCTAATATATATCTGAC
* *
7712151 TCTGTATCTGATTGGGCTAAGGCCCTATTATATATCTGA
1 TCTGTATCTGATTAGGCTAAGGCCCTAATATATATCTGA
7712190 TTCTACAACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (40 bp):
TCTGTATCTGATTAGGCTAAGGCCCTAATATATATCTGAC
Found at i:7712207 original size:40 final size:40
Alignment explanation
Indices: 7712125--7712215 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 40
7712115 TGTCTGATTA
* ** * * *
7712125 GGCTAAGGCCCTAATATATTTCTGACTCTGTATCTGATTG
1 GGCTAAGGCCCTAATATATATCTGACTCTACAACCGAGTG
* *
7712165 GGCTAAGGCCCTATTATATATCTGATTCTACAACCGAGTG
1 GGCTAAGGCCCTAATATATATCTGACTCTACAACCGAGTG
7712205 GGCTAAGGCCC
1 GGCTAAGGCCC
7712216 AAACAATTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (40 bp):
GGCTAAGGCCCTAATATATATCTGACTCTACAACCGAGTG
Found at i:7717088 original size:8 final size:8
Alignment explanation
Indices: 7717075--7717103 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7717065 TTATGTTTAG
7717075 TATATTAT
1 TATATTAT
7717083 TATATTAT
1 TATATTAT
7717091 TATATTAT
1 TATATTAT
7717099 TATAT
1 TATAT
7717104 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:7717136 original size:5 final size:5
Alignment explanation
Indices: 7717126--7717182 Score: 98
Period size: 5 Copynumber: 11.4 Consensus size: 5
7717116 TTATGTTTTA
7717126 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
7717175 ATATAT AT
1 AT-TAT AT
7717183 ATAAACTAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.08
5 41 0.82
6 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:7717185 original size:10 final size:10
Alignment explanation
Indices: 7717128--7717185 Score: 60
Period size: 9 Copynumber: 6.6 Consensus size: 10
7717118 ATGTTTTAAT
7717128 TATAT-TATA
1 TATATATATA
7717137 T-TATAT-TA
1 TATATATATA
7717145 TAT-TATAT-
1 TATATATATA
7717153 TATAT-TATA
1 TATATATATA
7717162 T-TATATATA
1 TATATATATA
7717171 T-TATATATA
1 TATATATATA
7717180 TATATA
1 TATATA
7717186 AACTAAAGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
8 18 0.43
9 20 0.48
10 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TATATATATA
Found at i:7718469 original size:15 final size:15
Alignment explanation
Indices: 7718449--7718505 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
7718439 CGATGAATTT
7718449 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
7718464 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
7718479 ATTGAATTTATATTG
1 ATTGAATTTATATTG
7718494 ATTGAA-TTATAT
1 ATTGAATTTATAT
7718506 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:7718925 original size:21 final size:21
Alignment explanation
Indices: 7718890--7718983 Score: 125
Period size: 21 Copynumber: 4.4 Consensus size: 21
7718880 GCACTTTATA
7718890 TGTCGTATTTCAGGCACCTCGTG
1 TGTCGTA--TCAGGCACCTCGTG
7718913 TGTCGTATCAGGCACCTCGTG
1 TGTCGTATCAGGCACCTCGTG
7718934 TGTCGTATCAGGCACCTCGTG
1 TGTCGTATCAGGCACCTCGTG
* * * **
7718955 TGTCGTTTTAGGCACTTTATG
1 TGTCGTATCAGGCACCTCGTG
7718976 TGTCGTAT
1 TGTCGTAT
7718984 ACTGATCAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 58 0.89
23 7 0.11
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTCGTATCAGGCACCTCGTG
Found at i:7727473 original size:23 final size:23
Alignment explanation
Indices: 7727447--7727492 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7727437 ATGTAATCCT
7727447 AGATATGA-TATGTAATCTTTAGA
1 AGATATGATTATGTAAT-TTTAGA
*
7727470 AGATATGATTCTGTAATTTTAGA
1 AGATATGATTATGTAATTTTAGA
7727493 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.37, C:0.04, G:0.17, T:0.41
Consensus pattern (23 bp):
AGATATGATTATGTAATTTTAGA
Found at i:7728164 original size:13 final size:13
Alignment explanation
Indices: 7728146--7728176 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7728136 TTTCTTTTAT
7728146 ATATAATAATATA
1 ATATAATAATATA
7728159 ATATAATAATATA
1 ATATAATAATATA
7728172 ATATA
1 ATATA
7728177 CTTAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATATAATAATATA
Found at i:7733479 original size:4 final size:4
Alignment explanation
Indices: 7733470--7733519 Score: 100
Period size: 4 Copynumber: 12.5 Consensus size: 4
7733460 AAGTACTCCA
7733470 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
7733518 AT
1 AT
7733520 AAATTTTGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:7734062 original size:2 final size:2
Alignment explanation
Indices: 7734055--7734081 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7734045 TTCGATTATC
7734055 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7734082 TTCTTATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7734325 original size:45 final size:45
Alignment explanation
Indices: 7734260--7734364 Score: 138
Period size: 45 Copynumber: 2.3 Consensus size: 45
7734250 AGTACCTAAT
** * *
7734260 CAGTAATCAGTAACGGTATTCAACACACAAAGTGTTAAATCTGTAA
1 CAGTAA-CAGTAACAATATTCAACACACAAAGTGTCAAATCGGTAA
* * *
7734306 CAGTAACGGTAACAATATTCGACACACAAAGTGTCGAATCGGTAA
1 CAGTAACAGTAACAATATTCAACACACAAAGTGTCAAATCGGTAA
7734351 CAGTAACAGTAACA
1 CAGTAACAGTAACA
7734365 GTAACAGTAG
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 45 0.88
46 6 0.12
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (45 bp):
CAGTAACAGTAACAATATTCAACACACAAAGTGTCAAATCGGTAA
Found at i:7734358 original size:6 final size:6
Alignment explanation
Indices: 7734347--7734373 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7734337 TGTCGAATCG
7734347 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
7734374 GTCGGCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:7734655 original size:40 final size:40
Alignment explanation
Indices: 7734579--7734659 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
7734569 CTTCATTAGA
* ** *
7734579 AATTTTACAGTTCAATGCAATATACGTAACATTATTCAGT
1 AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
* * *
7734619 AATTTCACAGTTCAATTCAGTATTCAAAACAATATTCAGT
1 AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
7734659 A
1 A
7734660 TCCCATAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
Found at i:7735457 original size:5 final size:5
Alignment explanation
Indices: 7735447--7735502 Score: 82
Period size: 5 Copynumber: 11.6 Consensus size: 5
7735437 TTTATGTATA
7735447 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT AATAAT AT-A- ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT
7735495 ATAAT ATA
1 ATAAT ATA
7735503 CTTAATTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
3 2 0.04
4 4 0.09
5 39 0.83
6 2 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:7736855 original size:24 final size:24
Alignment explanation
Indices: 7736810--7736855 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
7736800 ATTTTTTTGA
* *
7736810 TTGACATGTATTAGGTATCTTTAC
1 TTGACATGTATTAGGCACCTTTAC
* *
7736834 TTGACATGTGTTATGCACCTTT
1 TTGACATGTATTAGGCACCTTT
7736856 GAATAACGTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (24 bp):
TTGACATGTATTAGGCACCTTTAC
Found at i:7746591 original size:16 final size:17
Alignment explanation
Indices: 7746570--7746603 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7746560 TAGGAAAGTA
7746570 ATTTAGTTAT-ATTTTT
1 ATTTAGTTATCATTTTT
*
7746586 ATTTAGTTTTCATTTTT
1 ATTTAGTTATCATTTTT
7746603 A
1 A
7746604 GTTCATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.68
Consensus pattern (17 bp):
ATTTAGTTATCATTTTT
Found at i:7747119 original size:23 final size:22
Alignment explanation
Indices: 7747093--7747144 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
7747083 TGATTCCTAC
*
7747093 TTAGTTTATTTTCTATTTATAAT
1 TTAGTTTATTTTC-ATATATAAT
* *
7747116 TTAGGTTTCTTTTCATATGTAAT
1 TTA-GTTTATTTTCATATATAAT
7747139 TTAGTT
1 TTAGTT
7747145 AGTTCACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 3 0.12
23 13 0.52
24 9 0.36
ACGTcount: A:0.23, C:0.06, G:0.10, T:0.62
Consensus pattern (22 bp):
TTAGTTTATTTTCATATATAAT
Found at i:7749896 original size:24 final size:24
Alignment explanation
Indices: 7749844--7749889 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7749834 TCTAGCTTTG
7749844 ATTTTGATTTTAATATTAATTTTT
1 ATTTTGATTTTAATATTAATTTTT
* *
7749868 ATTTTGATTTTACTTTTAATTT
1 ATTTTGATTTTAATATTAATTT
7749890 GTTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
ATTTTGATTTTAATATTAATTTTT
Found at i:7756285 original size:20 final size:19
Alignment explanation
Indices: 7756249--7756290 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7756239 GGTTGTTTTC
7756249 TTTTGCTTTCTGATTTTGGT
1 TTTTGCTTTCTGATTTT-GT
*
7756269 TTTTGCTTTATTG-TTTTGT
1 TTTTGCTTT-CTGATTTTGT
7756288 TTT
1 TTT
7756291 GGTTTGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 13 0.65
21 2 0.10
ACGTcount: A:0.05, C:0.07, G:0.17, T:0.71
Consensus pattern (19 bp):
TTTTGCTTTCTGATTTTGT
Found at i:7759777 original size:15 final size:14
Alignment explanation
Indices: 7759752--7759789 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
7759742 GTTTGCCAGT
7759752 AAAATATTTTTTAA
1 AAAATATTTTTTAA
*
7759766 AAAATAATTTTTAA
1 AAAATATTTTTTAA
7759780 AAAATGATTT
1 AAAAT-ATTT
7759790 ATTTTTTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAAATATTTTTTAA
Found at i:7759795 original size:18 final size:18
Alignment explanation
Indices: 7759772--7759813 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7759762 TTAAAAAATA
7759772 ATTTTTAAAAAATGATTT
1 ATTTTTAAAAAATGATTT
** *
7759790 ATTTTTTGAGAATGATTT
1 ATTTTTAAAAAATGATTT
7759808 ATTTTT
1 ATTTTT
7759814 TGGTGTTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
ATTTTTAAAAAATGATTT
Done.