Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 300 of 410
Found at i:92805275 original size:71 final size:71
Alignment explanation
Indices: 92805187--92805421 Score: 470
Period size: 71 Copynumber: 3.3 Consensus size: 71
92805177 GAGATGTATC
92805187 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
92805252 AGGACA
66 AGGACA
92805258 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
92805323 AGGACA
66 AGGACA
92805329 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
92805394 AGGACA
66 AGGACA
92805400 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
92805422 AGACAAATCG
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 164 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:92807785 original size:29 final size:29
Alignment explanation
Indices: 92807752--92807911 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
92807742 GTGACGAGAT
92807752 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
92807781 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
92807810 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
92807839 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
92807868 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
92807897 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
92807912 GAAATCGAGT
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 2 0.02
29 106 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:92822151 original size:47 final size:47
Alignment explanation
Indices: 92822079--92822253 Score: 197
Period size: 47 Copynumber: 3.7 Consensus size: 47
92822069 AATCGATAAG
* * * * **
92822079 TACCTATATCATGGCTTGTAGCCAAATTAAGGTAACTTATCCCATCA
1 TACCTATATCATGGCTCGTATCCAAATCAAGGTAACTCATCCCAAAA
* * *
92822126 TACCTATACCATGGCTCGTATCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATATCATGGCTCGTATCCAAATCAAGGTAACTCATCCCAAAA
* * *
92822173 TACCTATATCATGGCCCGTATCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATATCATGGCTCGTATCCAAATCAAGGTAACTCATCCCAAAA
* * * * *
92822220 TACATAAATCATGGCCCATAGCCAAATCAAGGTA
1 TACCTATATCATGGCTCGTATCCAAATCAAGGTA
92822254 GTATTCGCAC
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (47 bp):
TACCTATATCATGGCTCGTATCCAAATCAAGGTAACTCATCCCAAAA
Found at i:92827581 original size:21 final size:21
Alignment explanation
Indices: 92827555--92827595 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
92827545 ATCTGCTCAA
*
92827555 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
92827576 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
92827596 TCGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:92831920 original size:18 final size:18
Alignment explanation
Indices: 92831897--92831933 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92831887 ATCACTTAAC
92831897 AACTATGTAACTAAAAAA
1 AACTATGTAACTAAAAAA
92831915 AACTATGTAACTAAAAAA
1 AACTATGTAACTAAAAAA
92831933 A
1 A
92831934 GATATTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (18 bp):
AACTATGTAACTAAAAAA
Found at i:92838703 original size:23 final size:22
Alignment explanation
Indices: 92838676--92838807 Score: 120
Period size: 23 Copynumber: 5.8 Consensus size: 22
92838666 GGACTCACCA
*
92838676 CAGCTCATTGGAGCTTACCGATT
1 CAGCTCATTAGAGCTTACCG-TT
* * * *
92838699 TAGCTCGTAAGAGCTTACTGCTT
1 CAGCTCATTAGAGCTTACCG-TT
* *
92838722 CAGCTCATTGGAGCTTATCGATT
1 CAGCTCATTAGAGCTTACCG-TT
* *
92838745 CAGCTCAATAGAGCTTACTGTT
1 CAGCTCATTAGAGCTTACCGTT
* * *
92838767 AAGCTTAATAGAGCTTACCGTTT
1 CAGCTCATTAGAGCTTACCG-TT
92838790 CAGCTCATTAGAGCTTAC
1 CAGCTCATTAGAGCTTAC
92838808 TATCCATCAG
Statistics
Matches: 85, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
22 19 0.22
23 66 0.78
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (22 bp):
CAGCTCATTAGAGCTTACCGTT
Found at i:92838744 original size:46 final size:44
Alignment explanation
Indices: 92838676--92838808 Score: 142
Period size: 46 Copynumber: 2.9 Consensus size: 44
92838666 GGACTCACCA
92838676 CAGCTCATTGGAGCTTACCGATTTAGCTCGTAAGAGCTTACTGCTT
1 CAGCTCATTGGAGCTTACCGATTTAGCTC-TAAGAGCTTACTG-TT
* * *
92838722 CAGCTCATTGGAGCTTATCGATTCAGCTCAATAGAGCTTACTGTT
1 CAGCTCATTGGAGCTTACCGATTTAGCTCTA-AGAGCTTACTGTT
* * * * *
92838767 AAGCTTAATAGAGCTTACCG-TTTCAGCTCATTAGAGCTTACT
1 CAGCTCATTGGAGCTTACCGATTT-AGCTC-TAAGAGCTTACT
92838809 ATCCATCAGC
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
44 2 0.03
45 33 0.45
46 38 0.52
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (44 bp):
CAGCTCATTGGAGCTTACCGATTTAGCTCTAAGAGCTTACTGTT
Found at i:92838796 original size:45 final size:46
Alignment explanation
Indices: 92838677--92838808 Score: 135
Period size: 45 Copynumber: 2.9 Consensus size: 46
92838667 GACTCACCAC
* * * *
92838677 AGCTCATTGGAGCTTACCGATTT-AGCTC-GTAAGAGCTTACTGCTTC
1 AGCTCAATAGAGCTTACCG-TTTCAGCTCAAT-AGAGCTTACTGCTTA
* * * *
92838723 AGCTCATTGGAGCTTATCGATTCAGCTCAATAGAGCTTACTG-TTA
1 AGCTCAATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGCTTA
* *
92838768 AGCTTAATAGAGCTTACCGTTTCAGCTCATTAGAGCTTACT
1 AGCTCAATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACT
92838809 ATCCATCAGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
45 39 0.53
46 34 0.46
47 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (46 bp):
AGCTCAATAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGCTTA
Found at i:92846856 original size:46 final size:46
Alignment explanation
Indices: 92846688--92846860 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
92846678 TGTAACCCGC
** * * * * * *
92846688 CCATAAGTGAACTTAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
* * * *
92846734 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TT-CA-GAC-ATTTGCAT
*
92846784 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
92846827 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
92846861 GGATGCCCAA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 2 0.02
45 1 0.01
46 56 0.55
47 24 0.24
49 2 0.02
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
Found at i:92846882 original size:46 final size:46
Alignment explanation
Indices: 92846739--92846882 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
92846729 CGCATCCATA
92846739 AGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCCTA--TACATC-CT
* * * * *
92846788 --CGAACTCGGACTCAACTCAACGAGTTCAGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
92846831 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
92846878 AGTGA
1 AGTGA
92846883 CATGTCACTT
Statistics
Matches: 76, Mismatches: 12, Indels: 17
0.72 0.11 0.16
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 35 0.46
47 26 0.34
48 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:92849289 original size:15 final size:15
Alignment explanation
Indices: 92849263--92849311 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
92849253 CAAAGATAAC
92849263 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
92849276 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
92849291 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
92849306 AAGAAA
1 AAGAAA
92849312 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
13 6 0.19
14 2 0.06
15 23 0.74
ACGTcount: A:0.59, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:92849320 original size:15 final size:15
Alignment explanation
Indices: 92849273--92849320 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
92849263 AAGAAACCGA
92849273 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
92849287 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
92849303 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
92849318 ATA
1 ATA
92849321 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92852677 original size:29 final size:29
Alignment explanation
Indices: 92852644--92852717 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
92852634 GTGACGAGAT
92852644 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
92852673 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
92852702 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92852718 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:92852733 original size:29 final size:29
Alignment explanation
Indices: 92852701--92852776 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
92852691 CTGGAAATAT
* *
92852701 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
92852730 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
92852759 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
92852777 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:92860553 original size:29 final size:29
Alignment explanation
Indices: 92860520--92860593 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
92860510 GTGACGAGAT
92860520 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
92860549 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
92860578 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92860594 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:92860609 original size:29 final size:28
Alignment explanation
Indices: 92860577--92860651 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
92860567 CTGGAAATAT
* *
92860577 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
92860606 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
92860634 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
92860652 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:92860620 original size:58 final size:57
Alignment explanation
Indices: 92860520--92860651 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
92860510 GTGACGAGAT
* * * * * *
92860520 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
92860578 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
92860635 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
92860652 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:92863387 original size:93 final size:93
Alignment explanation
Indices: 92863227--92863398 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
92863217 GCCCATAAGT
* * *
92863227 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92863292 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
92863320 GAACTCAGACTCGACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92863385 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
92863399 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92863394 original size:46 final size:46
Alignment explanation
Indices: 92863219--92863394 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
92863209 TGTAACCCGC
* * *
92863219 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
92863265 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * * *
92863315 CTC-T---CGAACTCAGACTCGACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
92863358 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
92863395 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 62 0.58
47 26 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:92867271 original size:28 final size:28
Alignment explanation
Indices: 92867240--92867293 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
92867230 CCATCACAGA
* * *
92867240 AACAGTATTAGGTGGGCCTTAGCCCATT
1 AACAGAATCAGGTGGGCCTAAGCCCATT
92867268 AACAGAATCAGGTGGGCCTAAGCCCA
1 AACAGAATCAGGTGGGCCTAAGCCCA
92867294 ATACAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTAAGCCCATT
Found at i:92869780 original size:85 final size:84
Alignment explanation
Indices: 92869635--92869797 Score: 186
Period size: 85 Copynumber: 1.9 Consensus size: 84
92869625 CATAAACAGG
* * * * *
92869635 TACAATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATGTCGATGCCTCTATCCCAGACA
1 TACAATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAA-GTCGAGGCCTCTATCCCAAACA
*
92869700 -AGGTCTTGCACGAAATCAAA
65 CA-GTCTTACACGAAATCAAA
* * * *
92869720 TACAATGCCGATGTCCCAGACATGGTCTTATACGTACATCTCAA-TCGAGGCCTGTGTCCCAAAC
1 TACAATGCCGACGTCCCAGACATGGTCTTACACGTA-AT-TCAAGTCGAGGCCTCTATCCCAAAC
92869784 ACAGTCTTACACGA
64 ACAGTCTTACACGA
92869798 TATCTCAGAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
85 58 0.89
86 3 0.05
87 4 0.06
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (84 bp):
TACAATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAAGTCGAGGCCTCTATCCCAAACAC
AGTCTTACACGAAATCAAA
Found at i:92874316 original size:25 final size:25
Alignment explanation
Indices: 92874271--92874321 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
92874261 ACTCTTCTCA
* *
92874271 TCTCTTCACTTCTCTCACATTTTTC
1 TCTCTTCACTTCCCTCACATTATTC
*
92874296 TCTCTTCATTTCCCT-ATCATTATTC
1 TCTCTTCACTTCCCTCA-CATTATTC
92874321 T
1 T
92874322 TCATTCCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.53
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCACATTATTC
Found at i:92881914 original size:42 final size:42
Alignment explanation
Indices: 92881758--92881914 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 42
92881748 ACCAATCCAC
* * * * *
92881758 ATCCCAGATATAGTCTTACATGTAATCTCGTATTGATGCCAAT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCC-AT
* * * * * * *
92881801 AGCCTAGTTATGGTCTTCCACGAAGTCTCATATCGATACCGT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAT
*
92881843 ATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGCCAT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAT
*
92881885 ATCCTAGATATGGTCTTACAC-ATAATCTCA
1 ATCCCAGATATGGTCTTACACGA-AATCTCA
92881915 ATAACCCTAA
Statistics
Matches: 93, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 63 0.68
43 29 0.31
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAT
Found at i:92882744 original size:12 final size:13
Alignment explanation
Indices: 92882727--92882755 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
92882717 AGATGGACAA
92882727 AATTTGGC-TTTT
1 AATTTGGCTTTTT
92882739 AATTTGGCTTTTT
1 AATTTGGCTTTTT
92882752 AATT
1 AATT
92882756 CATTTAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:92888138 original size:37 final size:37
Alignment explanation
Indices: 92888088--92888164 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
92888078 CGAAACCTTG
92888088 TCTTCCAATACTTGAGTAAGGCCAATTGCTCTTAGTC
1 TCTTCCAATACTTGAGTAAGGCCAATTGCTCTTAGTC
92888125 TCTTCCAATACTTGAGTAAGGCCAATTGCTCTTAGTC
1 TCTTCCAATACTTGAGTAAGGCCAATTGCTCTTAGTC
92888162 TCT
1 TCT
92888165 CAAAGGGTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (37 bp):
TCTTCCAATACTTGAGTAAGGCCAATTGCTCTTAGTC
Found at i:92897666 original size:44 final size:42
Alignment explanation
Indices: 92897604--92897721 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
92897594 TGATGTATTT
* * *
92897604 TACCAATGCCATGTCCCAGACATGGTCTTACATGGAAATCTCA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA-AGAAACCTCA
* * **
92897647 TATCGATGCCAATATCCCAG-CTATGGTCTTACAAGATGCCTCA
1 TACCGATGCC-ATGTCCCAGAC-ATGGTCTTACAAGAAACCTCA
*
92897690 TGCCGATGCCATGTCCCAGACATGGTCTTACA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA
92897722 CTGGCTCATA
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 19 0.31
43 24 0.39
44 19 0.31
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (42 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACAAGAAACCTCA
Found at i:92897816 original size:95 final size:96
Alignment explanation
Indices: 92897698--92897912 Score: 256
Period size: 95 Copynumber: 2.2 Consensus size: 96
92897688 CATGCCGATG
* * ** * * *
92897698 CCATGTCCCAGACATGGTCTTACACTGGCTCATATAATGATGTCGATGCCATGAT-CCAGACAT-
1 CCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGCCAATGCCATG-TCCCAAACATG
* * *
92897761 GTCTTACACTGGCTCACATAACAATACT-GATA
65 GTCTTACACGGGATCACATAACAAT-CTCAATA
92897793 CCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGCCAATGCCATGTCCCAAACATGG
1 CCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGCCAATGCCATGTCCCAAACATGG
* * * *
92897858 TCTTATACGGGATCACATAATAATGTCAATG
66 TCTTACACGGGATCACATAACAATCTCAATA
*
92897889 CCATATCCCAGATATGGTCTTACA
1 CCATATCCCAGACATGGTCTTACA
92897913 TGGTTACACA
Statistics
Matches: 102, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
94 1 0.01
95 55 0.54
96 46 0.45
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (96 bp):
CCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGCCAATGCCATGTCCCAAACATGG
TCTTACACGGGATCACATAACAATCTCAATA
Found at i:92897924 original size:48 final size:48
Alignment explanation
Indices: 92897695--92897912 Score: 253
Period size: 48 Copynumber: 4.6 Consensus size: 48
92897685 CCTCATGCCG
* * ** *
92897695 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATAATGATGTCG
1 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCA
* *
92897743 ATGCCATGAT-CCAGACAT-GTCTTACACTGGCTCACATAACAAT-ACTG
1 ATGCCAT-ATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC-A
* *
92897790 ATACCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGCCA
1 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCA
* * * * * *
92897838 ATGCCATGTCCCAAACATGGTCTTATACGGGATCACATAATAATGTCA
1 ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCA
*
92897886 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGACATGGTCTTACA
92897913 TGGTTACACA
Statistics
Matches: 145, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
46 3 0.02
47 37 0.26
48 103 0.71
49 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCA
Found at i:92911048 original size:40 final size:40
Alignment explanation
Indices: 92910993--92911076 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
92910983 CACAGTATGT
*
92910993 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACGG
1 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACAG
92911033 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACAG
1 AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACAG
92911073 AGAA
1 AGAA
92911077 CGAGCAAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.52, C:0.17, G:0.21, T:0.10
Consensus pattern (40 bp):
AGAAACCAAAGAGAAATAACGCGAAGCTTAAGATACACAG
Found at i:92914267 original size:40 final size:40
Alignment explanation
Indices: 92914159--92914328 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
92914149 CGGGATTTAA
* * * * *
92914159 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
92914199 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92914239 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92914279 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
92914319 CCGGATATAT
1 CCGGATATAT
92914329 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:92930239 original size:43 final size:43
Alignment explanation
Indices: 92930192--92930285 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
92930182 CTCAGATAGG
* * * *
92930192 GTCTTACACGAAATC-GATTAACGATGCCAATGTCCTATACATT
1 GTCTTACACGAAATCTCAAT-ACAATGCCAATGTCCTAGACATT
***
92930235 GTCTTACATTTAATCTCAATACAATGCCAATGTCCTAGACATT
1 GTCTTACACGAAATCTCAATACAATGCCAATGTCCTAGACATT
92930278 GTCTTACA
1 GTCTTACA
92930286 TGTAATTGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 41 0.95
44 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (43 bp):
GTCTTACACGAAATCTCAATACAATGCCAATGTCCTAGACATT
Found at i:92935621 original size:27 final size:27
Alignment explanation
Indices: 92935583--92935774 Score: 231
Period size: 27 Copynumber: 7.1 Consensus size: 27
92935573 GGTCGTTATC
*
92935583 TGACCGTAATACCCCTGTTGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
92935610 TGACTGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
92935637 TAACCGTAATACCCTTGTATGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
92935664 TGACCGTAACACCCCTCTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
92935691 TGATCGTAATGCCCCTGTAAGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
92935718 TGACTGTAATGCCCCTGTAGGTTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
92935745 TGACCGTAATACCCCTATATGGTAATA
1 TGACCGTAATACCCCTGTAGGGTAAAA
92935772 TGA
1 TGA
92935775 TGATTATGCC
Statistics
Matches: 137, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:92935993 original size:27 final size:27
Alignment explanation
Indices: 92935911--92935995 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
92935901 ATGGAGGAAG
*
92935911 TACTG-TACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGTCACATT
* * *
92935937 CACT-ATTACTGGTGGCTATGTCATAAT
1 TACTGA-TACTGGTGGCTATGTCACATT
* *
92935964 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGATACTGGTGGCTATGTCACATT
92935991 TACTG
1 TACTG
92935996 TTCTGGAAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.06
27 43 0.91
28 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGTCACATT
Found at i:92937843 original size:22 final size:22
Alignment explanation
Indices: 92937812--92937863 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
92937802 TACTTACTTA
*
92937812 ATTTTTTTAGATAATTACATTT
1 ATTTTCTTAGATAATTACATTT
92937834 ATTTTCTTAGATAATTACATTT
1 ATTTTCTTAGATAATTACATTT
92937856 ATTTTCTT
1 ATTTTCTT
92937864 TAAATTAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.60
Consensus pattern (22 bp):
ATTTTCTTAGATAATTACATTT
Found at i:92938555 original size:40 final size:40
Alignment explanation
Indices: 92938477--92938555 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
92938467 CGGCGCAGTT
* ** *
92938477 TAAAAAACGCCACTATAGATTAAGTATTAGCGATGCTTTC
1 TAAAAAACGCCACTATAGATCAAACATTAGCGACGCTTTC
* * *
92938517 TAAAAAATGTCACTATAGATCAAACATTAGCTACGCTTT
1 TAAAAAACGCCACTATAGATCAAACATTAGCGACGCTTT
92938556 TTTTTAAACA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (40 bp):
TAAAAAACGCCACTATAGATCAAACATTAGCGACGCTTTC
Found at i:92941172 original size:43 final size:42
Alignment explanation
Indices: 92941106--92941190 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 42
92941096 AGTTCATTAT
* * * *
92941106 AAGATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACC
1 AAGATTTACTTGATTAAGAAAATGCATTATAT-GTTTATTACC
*
92941149 AAGATTTACTTGATTAAGAAAATGCATTGTATGTTTATTACC
1 AAGATTTACTTGATTAAGAAAATGCATTATATGTTTATTACC
92941191 TTGCAATGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 9 0.24
43 28 0.76
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.44
Consensus pattern (42 bp):
AAGATTTACTTGATTAAGAAAATGCATTATATGTTTATTACC
Found at i:92941410 original size:15 final size:15
Alignment explanation
Indices: 92941390--92941420 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92941380 TTGGTCAAAG
92941390 GAATATTCATTAGCA
1 GAATATTCATTAGCA
92941405 GAATATTCATTAGCA
1 GAATATTCATTAGCA
92941420 G
1 G
92941421 CTTAATCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (15 bp):
GAATATTCATTAGCA
Found at i:92941987 original size:42 final size:42
Alignment explanation
Indices: 92941929--92942019 Score: 137
Period size: 42 Copynumber: 2.1 Consensus size: 42
92941919 TTTTGCAGCA
* *
92941929 GCGTTTATGCGAAAAGCGCCACTAAAGGTCGTGTTCTATAGCG
1 GCGTTTGTG-GAAAAGCGCCACTAAAGGTCATGTTCTATAGCG
* *
92941972 GTGTTTGTGGAAAAGCGCCGCTAAAGGTCATGTTCTATAGCG
1 GCGTTTGTGGAAAAGCGCCACTAAAGGTCATGTTCTATAGCG
92942014 GCGTTT
1 GCGTTT
92942020 TTTACATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 36 0.84
43 7 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (42 bp):
GCGTTTGTGGAAAAGCGCCACTAAAGGTCATGTTCTATAGCG
Found at i:92944056 original size:31 final size:31
Alignment explanation
Indices: 92944018--92944079 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
92944008 TTTACAAAGA
*
92944018 AAGAGAGGATGGTGGATGAGAAGTAGATAGG
1 AAGAGAGGATGATGGATGAGAAGTAGATAGG
*
92944049 AAGAGAGGATGATGGATGAGAAGTGGATAGG
1 AAGAGAGGATGATGGATGAGAAGTAGATAGG
92944080 GAAAGGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.45, T:0.16
Consensus pattern (31 bp):
AAGAGAGGATGATGGATGAGAAGTAGATAGG
Found at i:92946534 original size:29 final size:29
Alignment explanation
Indices: 92946497--92946555 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
92946487 TATTTATAAC
*
92946497 TTATTTATT-TAAATTGTATATATATTATT
1 TTATGTATTATAAATTGTATAT-TATTATT
* *
92946526 TTATGTATTATATATTTTATATTATTATT
1 TTATGTATTATAAATTGTATATTATTATT
92946555 T
1 T
92946556 ACTTATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (29 bp):
TTATGTATTATAAATTGTATATTATTATT
Found at i:92946543 original size:16 final size:18
Alignment explanation
Indices: 92946511--92946545 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
92946501 TTATTTAAAT
92946511 TGTATATATATTATTTTA
1 TGTATATATATTATTTTA
92946529 TGTAT-TATA-TATTTTA
1 TGTATATATATTATTTTA
92946545 T
1 T
92946546 ATTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (18 bp):
TGTATATATATTATTTTA
Found at i:92946545 original size:21 final size:21
Alignment explanation
Indices: 92946513--92946576 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
92946503 ATTTAAATTG
*
92946513 TATATATATTATTTTATGTA-T
1 TATATATTTTATTTTAT-TATT
*
92946534 TATATATTTTATATTATTATT
1 TATATATTTTATTTTATTATT
*
92946555 TACTTATATTTTATTATATTAT
1 TA--TATATTTTATTTTATTAT
92946577 ATTACTTCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.06
21 18 0.50
23 16 0.44
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TATATATTTTATTTTATTATT
Found at i:92946548 original size:23 final size:26
Alignment explanation
Indices: 92946522--92946588 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
92946512 GTATATATAT
92946522 TATT-TTATGTA-TTATATATT-TTA
1 TATTATTATGTACTTATATATTATTA
* *
92946545 TATTATTATTTACTTATATTTTATTA
1 TATTATTATGTACTTATATATTATTA
92946571 TATTA-TAT-TACTTCATAT
1 TATTATTATGTACTT-ATAT
92946589 TTTTCTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.11
24 11 0.29
25 15 0.39
26 8 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (26 bp):
TATTATTATGTACTTATATATTATTA
Found at i:92946580 original size:5 final size:5
Alignment explanation
Indices: 92946513--92946580 Score: 52
Period size: 5 Copynumber: 13.4 Consensus size: 5
92946503 ATTTAAATTG
* *
92946513 TATA- TATAT TATTT TATGTAT TATA- TATTT TATAT TATTAT T-TACT
1 TATAT TATAT TATAT TA--TAT TATAT TATAT TATAT TA-TAT TATA-T
*
92946559 TATAT TTTAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TA
92946581 CTTCATATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
4 9 0.18
5 32 0.63
6 6 0.12
7 4 0.08
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (5 bp):
TATAT
Found at i:92946598 original size:23 final size:23
Alignment explanation
Indices: 92946536--92946591 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 23
92946526 TTATGTATTA
92946536 TATATTTTA-TATTATTATTTACT
1 TATATTTTATTA-TATTATTTACT
92946559 TATATTTTATTATATTATATTACT
1 TATATTTTATTATATTAT-TTACT
92946583 TCATATTTT
1 T-ATATTTT
92946592 TCTATTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 15 0.50
24 8 0.27
25 7 0.23
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (23 bp):
TATATTTTATTATATTATTTACT
Found at i:92946692 original size:24 final size:27
Alignment explanation
Indices: 92946634--92946705 Score: 82
Period size: 24 Copynumber: 2.9 Consensus size: 27
92946624 ATCATTACTT
92946634 ATTATT-TATTATATTATATTTTTATC
1 ATTATTATATTATATTATATTTTTATC
* *
92946660 A-CATAATATT-TA-TATATTTTTA-C
1 ATTATTATATTATATTATATTTTTATC
*
92946683 ATTATTATATTATTTTATATTTT
1 ATTATTATATTATATTATATTTT
92946706 AACAATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
23 2 0.05
24 17 0.46
25 5 0.14
26 13 0.35
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTATTATATTATATTATATTTTTATC
Found at i:92946714 original size:23 final size:24
Alignment explanation
Indices: 92946640--92946726 Score: 72
Period size: 23 Copynumber: 3.6 Consensus size: 24
92946630 ACTTATTATT
* * *
92946640 TATTATATTATATTTTTATCACATA
1 TATTATTTTATA-TTTTAACATATA
*
92946665 -A-TATTTATATATTTTTACATTATTA
1 TATTATTT-TATATTTTAACA-TA-TA
92946690 TATTATTTTATATTTTAACA-ATA
1 TATTATTTTATATTTTAACATATA
*
92946713 TATTATTTCATATT
1 TATTATTTTATATT
92946727 ATTATTATCT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
23 25 0.49
24 7 0.14
25 2 0.04
26 12 0.24
27 5 0.10
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.59
Consensus pattern (24 bp):
TATTATTTTATATTTTAACATATA
Found at i:92946720 original size:50 final size:50
Alignment explanation
Indices: 92946622--92946750 Score: 126
Period size: 50 Copynumber: 2.6 Consensus size: 50
92946612 TATTTAACAT
* * *
92946622 ATATCATTACTTATTATT-TATTATATTATATTTTTATCACATAATATTT-
1 ATATTATTA-TTATTATTATATTATTTTATATTTTTAACACATAATATTTC
*
92946671 ATA-TATTTTTACATTATTATATTATTTTATA-TTTTAACA-ATATATTATTTC
1 ATATTATTATT--ATTATTATATTATTTTATATTTTTAACACATA-A-TATTTC
92946722 ATATTATTATTATCTATTATATT-TTTTAT
1 ATATTATTATTAT-TATTATATTATTTTAT
92946751 GTATATTGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
47 2 0.03
48 6 0.09
49 17 0.25
50 24 0.36
51 12 0.18
52 6 0.09
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (50 bp):
ATATTATTATTATTATTATATTATTTTATATTTTTAACACATAATATTTC
Found at i:92946728 original size:28 final size:26
Alignment explanation
Indices: 92946634--92946728 Score: 74
Period size: 26 Copynumber: 3.7 Consensus size: 26
92946624 ATCATTACTT
*
92946634 ATTATT-TATTATATTATATTTTTATC
1 ATTATTATATTATATTATA-TTTTAAC
* * *
92946660 A-CATAATATT-TA-TATATTTTTAC
1 ATTATTATATTATATTATATTTTAAC
*
92946683 ATTATTATATTATTTTATATTTTAAC
1 ATTATTATATTATATTATATTTTAAC
92946709 AATATATTAT-TTCATATTAT
1 -AT-TATTATATT-ATATTAT
92946729 TATTATCTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
23 6 0.11
24 11 0.21
25 5 0.09
26 15 0.28
27 4 0.08
28 12 0.23
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (26 bp):
ATTATTATATTATATTATATTTTAAC
Found at i:92946728 original size:41 final size:41
Alignment explanation
Indices: 92946671--92946749 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 41
92946661 CATAATATTT
*
92946671 ATATATTTTTACATTATTA-TAT-TATTTTATATTTTAACA
1 ATATATTTTTACATTATTATTATCTATTATATATTTTAACA
* *
92946710 ATATATTATTTCATATTATTATTATCTATTATATTTTTTA
1 ATATATT-TTT-ACATTATTATTATCTATTATATATTTTA
92946750 TGTATATTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 7 0.21
40 3 0.09
41 8 0.24
42 3 0.09
43 12 0.36
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (41 bp):
ATATATTTTTACATTATTATTATCTATTATATATTTTAACA
Found at i:92949531 original size:29 final size:28
Alignment explanation
Indices: 92949497--92949599 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
92949487 TAATCGATCA
*
92949497 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* *
92949526 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
92949555 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
92949584 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
92949600 ATCTTGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.05
29 61 0.94
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:92957621 original size:29 final size:29
Alignment explanation
Indices: 92957579--92957680 Score: 118
Period size: 29 Copynumber: 3.5 Consensus size: 29
92957569 AATCGATCAT
* * *
92957579 GCACACTTAATGCCATGTGATTTAAGCTC
1 GCACACTTAGTGCCATATAATTTAAGCTC
* *
92957608 GCACACATAGTGCCATATAATTTAAGTTC
1 GCACACTTAGTGCCATATAATTTAAGCTC
*
92957637 GCACACTTAGTGCCATACT--TTTCAAGCTT
1 GCACACTTAGTGCCATA-TAATTT-AAGCTC
92957666 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
92957681 ATCTTGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 3 0.05
29 59 0.94
30 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATAATTTAAGCTC
Found at i:92964503 original size:40 final size:40
Alignment explanation
Indices: 92964401--92964584 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
92964391 AAATTGAATG
* * * * *
92964401 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
92964441 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
92964481 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
92964521 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
92964561 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
92964585 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:92964609 original size:80 final size:80
Alignment explanation
Indices: 92964443--92964629 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
92964433 TGAAAATTAT
* * *
92964443 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
92964508 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
92964523 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
92964587 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
92964604 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
92964630 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:92972604 original size:40 final size:40
Alignment explanation
Indices: 92972502--92972685 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
92972492 AAATTGAATG
* * * * *
92972502 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
92972542 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
92972582 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
92972622 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
92972662 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
92972686 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:92972710 original size:80 final size:80
Alignment explanation
Indices: 92972544--92972730 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
92972534 TGAAAATTAT
* * *
92972544 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
92972609 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
92972624 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
92972688 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
92972705 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
92972731 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:92981931 original size:205 final size:206
Alignment explanation
Indices: 92981506--92982056 Score: 829
Period size: 205 Copynumber: 2.7 Consensus size: 206
92981496 GCAGATATGG
*
92981506 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATTGAAATCATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCT
*
92981571 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAA
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * **
92981636 AGAACAAATCGAAGTTTGGCGTCTCCATATTCAACGGAGAGCAGATACATAGCAGATCTGGCCTT
130 AGAACAAATCAAAGTTTGGCATCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTT
* * * *
92981701 TAGCTGTTTATA
195 CAGATGATTAGA
* *
92981713 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
* *
92981778 ATTTAGCTTTCACGTGCTTACG-TGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
92981842 GAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAG-GACAGACACATAGTAGATCTAACCTT
131 GAACAAATCAAAGTTTGGCATCTCCATATTCAACGGAGAG-CAGACACATAGCAGATCTAACCTT
92981906 CAGATGATTAGA
195 CAGATGATTAGA
* * *
92981918 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGA-CATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
* * * * *
92981982 GATTTGGTTTTCGCATGCTTACGTTGAAGCAAATCTAAGATGATTTGGCAACTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
92982047 AGAACAAATC
130 AGAACAAATC
92982057 GAAGAAGATT
Statistics
Matches: 313, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
204 1 0.00
205 179 0.57
206 127 0.41
207 6 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCATCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:92982101 original size:41 final size:40
Alignment explanation
Indices: 92982009--92982102 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
92981999 CTTACGTTGA
* * *
92982009 AGCAAATCTAAGATGATTTGGCAACTCTGTATTGTCAGAG
1 AGCAAATCGAAGAAGATTTGGCAACTCTGTATTGGCAGAG
* ** *
92982049 AACAAATCGAAGAAGATTTGGCGTCTCTGTGTTCGGCAGAG
1 AGCAAATCGAAGAAGATTTGGCAACTCTGTATT-GGCAGAG
*
92982090 AGCAGATCGAAGA
1 AGCAAATCGAAGA
92982103 TATCAACATG
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 27 0.61
41 17 0.39
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (40 bp):
AGCAAATCGAAGAAGATTTGGCAACTCTGTATTGGCAGAG
Found at i:92983792 original size:21 final size:20
Alignment explanation
Indices: 92983768--92983835 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
92983758 TTTTAAATTG
92983768 TATATATATTATTTTATGTAT
1 TATATATATTATTTTAT-TAT
* *
92983789 TATATATTTTATATTATTAT
1 TATATATATTATTTTATTAT
92983809 T-TACT-TA-TATTTTATTA-
1 TATA-TATATTATTTTATTAT
92983826 TAT-TATATTA
1 TATATATATTA
92983836 CTTCATATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
16 1 0.03
17 3 0.08
18 12 0.31
19 3 0.08
20 5 0.13
21 15 0.38
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (20 bp):
TATATATATTATTTTATTAT
Found at i:92983798 original size:16 final size:18
Alignment explanation
Indices: 92983766--92983800 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
92983756 TATTTTAAAT
92983766 TGTATATATATTATTTTA
1 TGTATATATATTATTTTA
92983784 TGTAT-TATA-TATTTTA
1 TGTATATATATTATTTTA
92983800 T
1 T
92983801 ATTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (18 bp):
TGTATATATATTATTTTA
Found at i:92983803 original size:23 final size:26
Alignment explanation
Indices: 92983777--92983843 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
92983767 GTATATATAT
92983777 TATT-TTATGTA-TTATATATT-TTA
1 TATTATTATGTACTTATATATTATTA
* *
92983800 TATTATTATTTACTTATATTTTATTA
1 TATTATTATGTACTTATATATTATTA
92983826 TATTA-TAT-TACTTCATAT
1 TATTATTATGTACTT-ATAT
92983844 TTTTCTATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.11
24 11 0.29
25 15 0.39
26 8 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (26 bp):
TATTATTATGTACTTATATATTATTA
Found at i:92983835 original size:5 final size:5
Alignment explanation
Indices: 92983768--92983835 Score: 52
Period size: 5 Copynumber: 13.4 Consensus size: 5
92983758 TTTTAAATTG
* *
92983768 TATA- TATAT TATTT TATGTAT TATA- TATTT TATAT TATTAT T-TACT
1 TATAT TATAT TATAT TA--TAT TATAT TATAT TATAT TA-TAT TATA-T
*
92983814 TATAT TTTAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TA
92983836 CTTCATATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
4 9 0.18
5 32 0.63
6 6 0.12
7 4 0.08
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (5 bp):
TATAT
Found at i:92983909 original size:65 final size:66
Alignment explanation
Indices: 92983825--92983980 Score: 169
Period size: 65 Copynumber: 2.4 Consensus size: 66
92983815 ATATTTTATT
*
92983825 ATATTA-TATTACT-TCATATTTTT-CTATAATCATATTAATATATATTTTAAC-ATATATCATT
1 ATATTATTATTACTATTATATTTTTAC-ATAATCATATTAATATATATTTTAACAATATATCATT
92983886 AC
65 AC
* * * * * *
92983888 TTATTATTTATTA-TATTATATTTTTACATTATTATATTATTTTATATTTTAACAATATATTATT
1 ATATTA-TTATTACTATTATATTTTTACATAATCATATTAATATATATTTTAACAATATATCATT
*
92983952 TC
65 AC
92983954 ATATTATTATTATCTATTATATATTTT
1 ATATTATTATTA-CTATTATAT-TTTT
92983981 TTTATGTATA
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
63 5 0.07
64 1 0.01
65 42 0.55
66 16 0.21
67 8 0.11
68 4 0.05
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (66 bp):
ATATTATTATTACTATTATATTTTTACATAATCATATTAATATATATTTTAACAATATATCATTA
C
Found at i:92983932 original size:26 final size:26
Alignment explanation
Indices: 92983890--92983980 Score: 84
Period size: 26 Copynumber: 3.6 Consensus size: 26
92983880 ATCATTACTT
*
92983890 ATTATT-TATTATATTATATTTTTAC
1 ATTATTATATTATTTTATATTTTTAC
*
92983915 ATTATTATATTATTTTATATTTTAAC
1 ATTATTATATTATTTTATATTTTTAC
* * *
92983941 A--A-TATATTATTTCATATTATTATT
1 ATTATTATATTATTTTATATTTTTA-C
92983965 ATCTATTATA-TATTTT
1 AT-TATTATATTATTTT
92983981 TTTATGTATA
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
23 17 0.32
24 2 0.04
25 6 0.11
26 18 0.34
27 6 0.11
28 4 0.08
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTATTATATTATTTTATATTTTTAC
Found at i:92983935 original size:75 final size:73
Alignment explanation
Indices: 92983772--92983935 Score: 158
Period size: 75 Copynumber: 2.2 Consensus size: 73
92983762 AAATTGTATA
* * * *
92983772 TATATTATTTTAT-GTATTATATATTTTATATTATTATTTACTTATATTTTATTATATTATATTA
1 TATATTATTTTATATTAATATATATTTTACATTATCATTTACTTATATTTTATTATATTATATTA
92983836 CTTCATAT
66 CTTCATAT
* * *
92983844 T-TTTCTATAATCATATTAATATATATTTTAACATATATCA-TTACTTAT-TATTTATTATATTA
1 TATAT-TAT-TTTATATTAATATATATTTT-ACAT-TATCATTTACTTATAT-TTTATTATATTA
*
92983906 TATT-TTTACATTAT
61 TATTACTT-CA-TAT
92983920 TATATTATTTTATATT
1 TATATTATTTTATATT
92983936 TTAACAATAT
Statistics
Matches: 72, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
71 2 0.03
72 4 0.06
73 3 0.04
74 15 0.21
75 35 0.49
76 11 0.15
77 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (73 bp):
TATATTATTTTATATTAATATATATTTTACATTATCATTTACTTATATTTTATTATATTATATTA
CTTCATAT
Found at i:92984170 original size:21 final size:22
Alignment explanation
Indices: 92984136--92984179 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
92984126 TATTTCAAAA
92984136 TTCATTATTAATT-AATATGTT
1 TTCATTATTAATTAAATATGTT
92984157 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
92984179 T
1 T
92984180 ATTATCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:92989099 original size:43 final size:42
Alignment explanation
Indices: 92989026--92989118 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 42
92989016 TGGCCCATAG
**
92989026 GCCCATTTCAATATCACATATAATGTCAATGAAAAGAATGCAA
1 GCCCATTTCAATATCACATATAATACCAATG-AAAGAATGCAA
* *
92989069 GCCCATTTCAATATCACATGA-AATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAT-ATAATACCAATGAAAGAATGCAA
*
92989111 ACCCATTT
1 GCCCATTT
92989119 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
42 16 0.36
43 27 0.61
44 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATATAATACCAATGAAAGAATGCAA
Found at i:92989290 original size:23 final size:23
Alignment explanation
Indices: 92989260--92989424 Score: 251
Period size: 23 Copynumber: 7.1 Consensus size: 23
92989250 CCTTGCCTCT
*
92989260 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
92989283 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* * *
92989306 TTTTGATCACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
92989330 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
92989353 TTTTGATAACTGGGGCATAA-CCC
1 -TTTAATAACTGGGGCATAAGCCC
92989376 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
92989399 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
92989422 TTT
1 TTT
92989425 TTCACTTCCT
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.14
23 73 0.57
24 37 0.29
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:92989322 original size:47 final size:47
Alignment explanation
Indices: 92989258--92989424 Score: 266
Period size: 47 Copynumber: 3.6 Consensus size: 47
92989248 GGCCTTGCCT
* * *
92989258 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
92989305 CTTTTGATCACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
92989352 CTTTTGATAACTGGGGCATAA-CCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
92989398 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTGATAACTGGGGCATAAGCCCTTT
92989425 TTCACTTCCT
Statistics
Matches: 111, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
45 18 0.16
46 32 0.29
47 61 0.55
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:92989497 original size:9 final size:9
Alignment explanation
Indices: 92989483--92989539 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
92989473 ATCTCATGTG
92989483 CATATCATA
1 CATATCATA
*
92989492 CATATCATGTG
1 CATATCA--TA
92989503 CATATCATA
1 CATATCATA
* *
92989512 CATGTCATGTG
1 CATATCA--TA
92989523 CATATCATA
1 CATATCATA
92989532 CATATCAT
1 CATATCAT
92989540 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:92989499 original size:20 final size:20
Alignment explanation
Indices: 92989471--92989541 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
92989461 GCATTTATGA
*
92989471 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
92989491 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
92989511 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
92989531 ACATATCATGT
1 ACATATCATGT
92989542 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:92989506 original size:11 final size:11
Alignment explanation
Indices: 92989476--92989530 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
92989466 TATGAACATC
92989476 TCATGTGCATA
1 TCATGTGCATA
*
92989487 TCA--TACATA
1 TCATGTGCATA
92989496 TCATGTGCATA
1 TCATGTGCATA
* *
92989507 TCA--TACATG
1 TCATGTGCATA
92989516 TCATGTGCATA
1 TCATGTGCATA
92989527 TCAT
1 TCAT
92989531 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:92989606 original size:25 final size:25
Alignment explanation
Indices: 92989578--92989625 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
92989568 ATATATAAAC
* * *
92989578 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGATCATTTTTA
92989603 CCTAGGGGCAAAATGATCATTTT
1 CCTAGGGGCAAAATGATCATTTT
92989626 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGATCATTTTTA
Found at i:92990821 original size:27 final size:27
Alignment explanation
Indices: 92990786--92990842 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
92990776 GGGCATATTC
* *
92990786 GTCATTTTATCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
92990813 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
92990840 GTC
1 GTC
92990843 TTTTTACCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:92990934 original size:27 final size:27
Alignment explanation
Indices: 92990904--92990955 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
92990894 GTAAATCAAC
92990904 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
92990931 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
92990956 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:92991075 original size:27 final size:27
Alignment explanation
Indices: 92990912--92991106 Score: 126
Period size: 27 Copynumber: 7.1 Consensus size: 27
92990902 ACAAACCAAA
* * * *
92990912 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
92990939 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * * *
92990968 GGTATTTCT-GTAACTTTGTAAATTAGG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * **
92990995 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
92991022 GGT-TTTTCGGTAATTTCACAAACCAAG
1 GGTATTTT-AGTAATTTTATAAATCAAG
*
92991049 GGTATTTTAGTAATTTTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** *
92991076 GGTAAAATAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
92991103 GGTA
1 GGTA
92991107 AAACAGCAAT
Statistics
Matches: 132, Mismatches: 29, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
26 5 0.04
27 94 0.71
28 18 0.14
29 15 0.11
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:92991401 original size:27 final size:27
Alignment explanation
Indices: 92991058--92991403 Score: 385
Period size: 27 Copynumber: 12.8 Consensus size: 27
92991048 GGGTATTTTA
* * **
92991058 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTATGTAAATCAGGGGTAAAACG
* * * *
92991085 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTATGTAAATCAGGGGTAAAACG
* **
92991112 GCAATTCCGTAAATC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
* *
92991139 GTAATTCTGTAAGTC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
* *
92991166 ATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
*
92991193 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
92991220 GTAATTCTGTAAGTC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
*
92991247 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
92991274 GTGATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
92991301 GTAATTCTGTAAGTC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
*
92991328 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
*
92991355 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
92991382 GTAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCAGGGGTA
92991404 CTTTGGTAAT
Statistics
Matches: 276, Mismatches: 37, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 271 0.98
28 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (27 bp):
GTAATTATGTAAATCAGGGGTAAAACG
Found at i:92991430 original size:27 final size:27
Alignment explanation
Indices: 92991400--92991498 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
92991390 GTAAATCGGG
*
92991400 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAA
* *
92991427 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAA
* * *
92991454 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCGGTAATTTTACAAATCGAA
92991480 GGGTATTTCGGTAATTTTA
1 -GGTATTTCGGTAATTTTA
92991499 GTAAACTAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.08
27 55 0.92
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAA
Found at i:92991438 original size:54 final size:53
Alignment explanation
Indices: 92991392--92991496 Score: 124
Period size: 54 Copynumber: 2.0 Consensus size: 53
92991382 GTAATTCTGT
* * *
92991392 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
92991446 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
92991497 TAGTAAACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
53 11 0.25
54 33 0.75
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.37
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:92991439 original size:81 final size:81
Alignment explanation
Indices: 92991058--92991403 Score: 516
Period size: 81 Copynumber: 4.3 Consensus size: 81
92991048 GGGTATTTTA
* * * * * * * * * **
92991058 GTAATTTTGTAAATCAAGGGTAAAA-TAGTAATTCTATAAATCAAGGGTAAAACAGCAATTCCGT
1 GTAATTCTGTAAGTCGAGGGTAAAACGA-TAATTATGTAAATCAGGGGTAAAACGGTAATTATGT
*
92991122 AAA-TCGAGGGTAAAACG
65 AAATTAG-GGGTAAAACG
*
92991139 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATTAGGGGTAAAACGGTAATTATGTA
1 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTA
92991204 AATTAGGGGTAAAACG
66 AATTAGGGGTAAAACG
*
92991220 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTGATTATGTA
1 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTA
92991285 AATTAGGGGTAAAACG
66 AATTAGGGGTAAAACG
92991301 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTA
1 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTA
92991366 AATTAGGGGTAAAACG
66 AATTAGGGGTAAAACG
* *
92991382 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAGTCGAGGGTA
92991404 CTTTGGTAAT
Statistics
Matches: 245, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
81 242 0.99
82 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (81 bp):
GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTA
AATTAGGGGTAAAACG
Found at i:92991512 original size:27 final size:27
Alignment explanation
Indices: 92991409--92991513 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 27
92991399 GGGTACTTTG
* * *
92991409 GTAATTTTACAAGTCGAAG-GTATTTCG
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
92991436 GTAAATTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
92991463 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
92991490 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
92991514 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:92996235 original size:45 final size:45
Alignment explanation
Indices: 92996131--92996349 Score: 284
Period size: 45 Copynumber: 4.9 Consensus size: 45
92996121 TGAATTCATC
* * * *
92996131 CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-AT-TTCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCT
* * *
92996173 CACCAGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATCA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* *
92996218 CACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGTATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* *
92996263 CACCGACATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* *
92996308 TACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
92996350 CCGTACAATA
Statistics
Matches: 153, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 9 0.06
43 16 0.10
44 4 0.03
45 123 0.80
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
Found at i:92998474 original size:36 final size:36
Alignment explanation
Indices: 92998428--92998506 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
92998418 CTCTTTCAAT
92998428 TCTCTTTAGCATTTTCCATTCCCCAAGCCTAGCATCA
1 TCTC-TTAGCATTTTCCATTCCCCAAGCCTAGCATCA
92998465 TCTCTTAGCATTTTCCATTCCCCAAGCCTAGCATCA
1 TCTCTTAGCATTTTCCATTCCCCAAGCCTAGCATCA
92998501 TCTCTT
1 TCTCTT
92998507 CATAGAGATT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 38 0.90
37 4 0.10
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.37
Consensus pattern (36 bp):
TCTCTTAGCATTTTCCATTCCCCAAGCCTAGCATCA
Found at i:93004822 original size:19 final size:18
Alignment explanation
Indices: 93004785--93004828 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
93004775 ATACATACAG
93004785 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
93004802 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
93004821 TACTAATT
1 TAATAATT
93004829 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:93009017 original size:19 final size:18
Alignment explanation
Indices: 93008980--93009023 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
93008970 ATACATACAG
93008980 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
93008997 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
93009016 TACTAATT
1 TAATAATT
93009024 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:93011965 original size:40 final size:40
Alignment explanation
Indices: 93011891--93012110 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
93011881 AAGTATCTTT
* *
93011891 GGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
* **
93011930 GGGTCTTAGCCCGGATATAGTCACTAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
93011970 GGGACTTAGCCCAGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
*
93012010 GGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTTC
* *
93012053 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
93012093 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
93012111 CATCCGAATA
Statistics
Matches: 160, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 8 0.05
40 115 0.72
41 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:93012083 original size:83 final size:80
Alignment explanation
Indices: 93011891--93012110 Score: 300
Period size: 83 Copynumber: 2.7 Consensus size: 80
93011881 AAGTATCTTT
* * * *
93011891 GGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
**
93011955 AGCATGAATGCCTTC
66 AGCACAAATGCCTTC
* * *
93011970 GGGACTTAGCCCAGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAAC
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-AC
93012034 TACTCGCACAAATGCCTTC
65 TA---GCACAAATGCCTTC
*
93012053 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
93012111 CATCCGAATA
Statistics
Matches: 123, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 9 0.07
80 48 0.39
83 66 0.54
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (80 bp):
GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
AGCACAAATGCCTTC
Found at i:93015753 original size:39 final size:39
Alignment explanation
Indices: 93015672--93015834 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
93015662 TATGGTAACC
* *
93015672 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
93015712 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
93015751 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
93015790 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
93015829 CGCACA
1 CGCACA
93015835 TTCATACACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:93021977 original size:77 final size:80
Alignment explanation
Indices: 93021844--93022025 Score: 232
Period size: 77 Copynumber: 2.3 Consensus size: 80
93021834 CGAATGATGT
*
93021844 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
93021908 GTGCGAGTTACTA-AA
65 GTGCGAGTTACTATAA
* * **
93021923 TCC-GGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -CCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
93021984 TGTGCGAGTTACTATAA
64 TGTGCGAGTTACTATAA
*
93022001 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
93022026 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
76 1 0.01
77 52 0.58
78 15 0.17
79 7 0.08
80 15 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:93022032 original size:40 final size:40
Alignment explanation
Indices: 93021843--93022025 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
93021833 TCGAATGATG
* * *
93021843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
93021883 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
93021923 TCC-GGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93021960 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93022001 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93022026 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
37 30 0.23
38 6 0.05
39 6 0.05
40 77 0.60
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93029973 original size:76 final size:80
Alignment explanation
Indices: 93029841--93030021 Score: 223
Period size: 76 Copynumber: 2.3 Consensus size: 80
93029831 CGAATGATGT
*
93029841 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCA-TT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
93029904 GTGCGAGTTACTA-AA
65 GTGCGAGTTACTATAA
* * **
93029919 TCC-GGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -CCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
93029980 TGTGCGAGTTACTATAA
64 TGTGCGAGTTACTATAA
*
93029997 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
93030022 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
75 1 0.01
76 34 0.38
77 24 0.27
78 15 0.17
79 2 0.02
80 13 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:93030028 original size:40 final size:40
Alignment explanation
Indices: 93029840--93030021 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
93029830 TCGAATGATG
* * *
93029840 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
93029880 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
93029919 TCC-GGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93029956 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93029997 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93030022 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
36 9 0.07
37 20 0.16
38 12 0.09
39 11 0.09
40 72 0.57
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93031651 original size:28 final size:26
Alignment explanation
Indices: 93031620--93031683 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
93031610 AATTACTTGA
* *
93031620 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
* *
93031648 ATACCCCTAGGTGCAAGATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
93031674 ATACCCCTAG
1 ATACCCCTAG
93031684 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:93031822 original size:27 final size:26
Alignment explanation
Indices: 93031792--93031892 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 26
93031782 AGCGTCCTGA
*
93031792 TGGCTATGCCACAATTATCTGATCTGG
1 TGGCTCTGCCAC-ATTATCTGATCTGG
* *
93031819 TGGCTCTGCCACATATATCTGTTCTAG
1 TGGCTCTGCCACAT-TATCTGATCTGG
*
93031846 TGGCTCTGCCATGATTATCTGTATCTGG
1 TGGCTCTGCCA-CATTATCTG-ATCTGG
* **
93031874 TGACTCTATCACATTATCT
1 TGGCTCTGCCACATTATCT
93031893 ATTCTGGCAG
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.03
27 45 0.74
28 14 0.23
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (26 bp):
TGGCTCTGCCACATTATCTGATCTGG
Found at i:93036296 original size:21 final size:20
Alignment explanation
Indices: 93036258--93036298 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
93036248 ATAAGTATGA
*
93036258 ATTTTAATATTTGATGATAG
1 ATTTTAATAGTTGATGATAG
*
93036278 ATTTTGAATAGTTGTTGATAG
1 ATTTT-AATAGTTGATGATAG
93036299 TTAAACAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (20 bp):
ATTTTAATAGTTGATGATAG
Found at i:93038096 original size:12 final size:12
Alignment explanation
Indices: 93038079--93038103 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93038069 GTTTGGCACT
93038079 GCCTAGCACACG
1 GCCTAGCACACG
93038091 GCCTAGCACACG
1 GCCTAGCACACG
93038103 G
1 G
93038104 TCGTGTGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:93040639 original size:29 final size:29
Alignment explanation
Indices: 93040549--93040708 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
93040539 ACTCGATTTC
* * **
93040549 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
93040578 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
93040606 CGCACACCCAGTGCCGTATATTTTCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
93040636 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93040665 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93040694 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
93040709 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 2 0.02
29 106 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:93048496 original size:57 final size:58
Alignment explanation
Indices: 93048435--93048564 Score: 165
Period size: 57 Copynumber: 2.3 Consensus size: 58
93048425 ATTTAAGCCC
* * * *
93048435 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTT-CAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
93048492 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
93048550 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
93048565 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 41 0.65
58 22 0.35
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:93048528 original size:29 final size:29
Alignment explanation
Indices: 93048406--93048564 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
93048396 ACTCGATTTC
* * **
93048406 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
93048435 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
93048463 CGCACACCCAGTGCCGTATATTT-CAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
93048492 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93048521 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93048550 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
93048565 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 24 0.22
29 85 0.78
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:93051771 original size:18 final size:18
Alignment explanation
Indices: 93051745--93051782 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
93051735 GGACACTAAG
93051745 AGCTATTATTAGTGATAA
1 AGCTATTATTAGTGATAA
*
93051763 AGCTGTTATTAGTGATAA
1 AGCTATTATTAGTGATAA
93051781 AG
1 AG
93051783 GTTCTCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (18 bp):
AGCTATTATTAGTGATAA
Found at i:93057588 original size:40 final size:40
Alignment explanation
Indices: 93057543--93057710 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
93057533 CGGAATATAA
93057543 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
93057583 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
93057623 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
93057663 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
93057703 CCGGATAT
1 CCGGATAT
93057711 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:93063128 original size:9 final size:9
Alignment explanation
Indices: 93063114--93063139 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
93063104 AGTATTACCG
93063114 AAACATTCA
1 AAACATTCA
93063123 AAACATTCA
1 AAACATTCA
93063132 AAACATTC
1 AAACATTC
93063140 TTCAATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (9 bp):
AAACATTCA
Found at i:93063531 original size:117 final size:117
Alignment explanation
Indices: 93063320--93063553 Score: 378
Period size: 117 Copynumber: 2.0 Consensus size: 117
93063310 CCCGTGTGGT
* * * * *
93063320 CTAGGGACACACACATGTGGTCAGGCCATGTACTGCACATGCTCGTATCCTTATCCCGTGTAACT
1 CTAGAGACACACACATGTGGTCAGGCCATGTACTACACATGCCCGTATCCCTAACCCGTGTAACT
*
93063385 CTCTGACTTTTAAAGCATGAAGAAATTGAAGTCACACGGCCAAGTCACACGC
66 CTCTGACTTTTAAAGCATGAAAAAATTGAAGTCACACGGCCAAGTCACACGC
* * *
93063437 CTAGAGACACGCACATGTGGTCAGGCCGTGTACTACACATGCCCGTGTCCCTAACCCGTGTAACT
1 CTAGAGACACACACATGTGGTCAGGCCATGTACTACACATGCCCGTATCCCTAACCCGTGTAACT
*
93063502 CTCTGACTTTTAATGCATGAAAAAATTGAAGTCACACGGCCAAGTCACACGC
66 CTCTGACTTTTAAAGCATGAAAAAATTGAAGTCACACGGCCAAGTCACACGC
93063554 TCGTGTGCTA
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
117 107 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (117 bp):
CTAGAGACACACACATGTGGTCAGGCCATGTACTACACATGCCCGTATCCCTAACCCGTGTAACT
CTCTGACTTTTAAAGCATGAAAAAATTGAAGTCACACGGCCAAGTCACACGC
Found at i:93066143 original size:7 final size:7
Alignment explanation
Indices: 93066131--93066157 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
93066121 AAAAATACTC
93066131 AATCTCT
1 AATCTCT
93066138 AATCTCT
1 AATCTCT
93066145 AATCTCT
1 AATCTCT
93066152 AATCTC
1 AATCTC
93066158 ATCGACAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (7 bp):
AATCTCT
Found at i:93072148 original size:27 final size:27
Alignment explanation
Indices: 93072110--93072165 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
93072100 TTTTTGAAAC
93072110 ACTTAGAAATTTTTCAAACTACAAGGG
1 ACTTAGAAATTTTTCAAACTACAAGGG
93072137 ACTTAGAAATTTTTCAAACTACAAGGG
1 ACTTAGAAATTTTTCAAACTACAAGGG
93072164 AC
1 AC
93072166 ACACGCGCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (27 bp):
ACTTAGAAATTTTTCAAACTACAAGGG
Found at i:93077002 original size:878 final size:878
Alignment explanation
Indices: 93075308--93077035 Score: 2951
Period size: 878 Copynumber: 2.0 Consensus size: 878
93075298 CATGAAGATA
* * *
93075308 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCGTTTCAAATCAGCATGCGAT
1 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCATTTCAAATCAGCATACAAT
93075373 TTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTCT
66 TTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTCT
* *
93075438 AATCAAATCAAGCCCGTGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGACATT
131 AATCAAATCAAGCCCATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGAAATT
*
93075503 TTCGACCATACAAAGCTTCATATGGTGCCATCTTTATGCTCGATTGAAAACTGTTGTTATACGCG
196 TTCGACCATACAAAGCTTCATATGGTGCCATCTTCATGCTCGATTGAAAACTGTTGTTATACGCG
* *
93075568 AATTCAACTAATGGCAAATATTTCTTCTAGTTTCTTTTAAATTCTAAAACACAATAATGAAGCAT
261 AATTCAACTAATGGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACACAATAACGAAGCAT
*
93075633 ATCTTCAAGAATCTAAATTACTCTTCCAGACTGAACATCGGTTTGCGGATGAAATGGGATACTAA
326 ATCTTCAAGAATCTAAATTACTCTTCCAGACTGAACATCGGTTTGCGGATGAAATGAGATACTAA
* *
93075698 ATTTCAACCGCGTACCCAAAGCTTCTTGCAGTTTCTTCCAAAATCGTGACGTAAACCTCGGATCT
391 ATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCCAAAATCGTGACGTAAACCTCGGATCT
* * * *
93075763 CTATCTGAAATAATTGAAACTAGCACCCGTGCAATCTAATGATCTCAGTAATATACAACTCTGCT
456 CTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGAAATATACAAATCTGCT
*
93075828 AATCTATCAAACGCATAGTATATACGTACCAGAATGAAATGTGTAGACTTTTTCAGTCGATCAAC
521 AATCTATCAAACGCATAGTATATACGTACCAGAATGAAATATGTAGACTTTTTCAGTCGATCAAC
* * * *
93075893 AGCAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGGCAAACCTGATACAAAATCCATCGTGAC
586 AGCAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCATAAC
*
93075958 TCTATCCCATTTCCACTCTGGTATCATTACTAGTTGTAACAATTCTGATGGCACCTAATGTTCAG
651 TCTATCCCATTTCCACTCTGGTATCATTACTAGTTGTAACAATCCTGATGGCACCTAATGTTCAG
*
93076023 CTTTAACTTGCTGACAAACCAAACATCTCGACACAAACTTAGAAATGTCTTGTTTCATGCCCGAC
716 CTTTAACTTGCTGACAAACCAAACATCTCGACACAAACTTAGAAATGTCTCGTTTCATGCCCGAC
* *
93076088 CACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCGAATGAACAGATAAACAATC
781 CACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCAAATGAACAGATAAACAACC
93076153 ACTGTTACAACTGATTTGAAATTTAATGTTTAG
846 ACTGTTACAACTGATTTGAAATTTAATGTTTAG
*
93076186 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAATGTCTTTGCATTTCAAATCCA-CATACAA
1 CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCATTTCAAAT-CAGCATACAA
93076250 TTTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTC
65 TTTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTC
*
93076315 TAATCAAATCAAGCCTATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGAAAT
130 TAATCAAATCAAGCCCATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGAAAT
* * * *
93076380 TTTCGACCATACAAAGCTTTATATGTTGCCATCTTCATGCTTGATTGAAAATTGTTGTTATACGC
195 TTTCGACCATACAAAGCTTCATATGGTGCCATCTTCATGCTCGATTGAAAACTGTTGTTATACGC
* *
93076445 GAATTCAACTAATGGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACATAGTAACGAAGCA
260 GAATTCAACTAATGGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACACAATAACGAAGCA
* ** *
93076510 TATCTTCAAGAATCTAAATTACTCTTTCAGACTGAATGTTGGTTTGCGGATGAAATGCAG-TACT
325 TATCTTCAAGAATCTAAATTACTCTTCCAGACTGAACATCGGTTTGCGGATGAAATG-AGATACT
* * *
93076574 AAATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCTAAAATTGTGATGTAAACCTCGGAT
389 AAATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCCAAAATCGTGACGTAAACCTCGGAT
*
93076639 CTCTATCCGAAATAATCGAAACTGGCACCCGTGCAATCTAATGATCTCAGAAATATACAAATCTG
454 CTCTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGAAATATACAAATCTG
* * *
93076704 CTAATCTATCAAGCGTATAGTCTATACGTACCAGAATGAAATATGTAGACTTTGTT-AGTCGATC
519 CTAATCTATCAAACGCATAGTATATACGTACCAGAATGAAATATGTAGACTTT-TTCAGTCGATC
93076768 AAC-GACAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCA
583 AACAG-CAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCA
*
93076832 TAACTCTATCCCATTTCCACTCTGGTATCATTACTGGTTGTAACAATCCTGATGGCACCTAATGT
647 TAACTCTATCCCATTTCCACTCTGGTATCATTACTAGTTGTAACAATCCTGATGGCACCTAATGT
*
93076897 TCAGCTTTAACTTGCTGACAAACCAAGCATCTCGACACAAACTTAGAAATGTCTCGTTTCATGCC
712 TCAGCTTTAACTTGCTGACAAACCAAACATCTCGACACAAACTTAGAAATGTCTCGTTTCATGCC
* * **
93076962 CGACCACCAGTATAATTATTTCAAATCATTATACATTTTTGTCCTCCTCAAATGAATGGATAAAC
777 CGACCACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCAAATGAACAGATAAAC
93077027 AACCACTGT
842 AACCACTGT
93077036 GTGCTTCGTG
Statistics
Matches: 797, Mismatches: 49, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
877 1 0.00
878 791 0.99
879 5 0.01
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.32
Consensus pattern (878 bp):
CTTTCAAAAATACTTTGTCACCGATTTGAAATTTAACGTCTTTGCATTTCAAATCAGCATACAAT
TTCTGTCGATCTGAAGCTACTTTCAAATTGTCGTGAATTACTTTCACCTTATCCTCACTCTCTCT
AATCAAATCAAGCCCATGAATCTTTTTCTCACTAAGCTCAGTCCAGTATAACAGAGTTTGAAATT
TTCGACCATACAAAGCTTCATATGGTGCCATCTTCATGCTCGATTGAAAACTGTTGTTATACGCG
AATTCAACTAATGGCAAATATTTCTTCTAGTTTCCTTTAAATTCTAAAACACAATAACGAAGCAT
ATCTTCAAGAATCTAAATTACTCTTCCAGACTGAACATCGGTTTGCGGATGAAATGAGATACTAA
ATTTCAACCGCGTACCCAAAGCTTCTTGCAATTCCTTCCAAAATCGTGACGTAAACCTCGGATCT
CTATCCGAAATAATCGAAACTAGCACCCGTGCAATCTAATGATCTCAGAAATATACAAATCTGCT
AATCTATCAAACGCATAGTATATACGTACCAGAATGAAATATGTAGACTTTTTCAGTCGATCAAC
AGCAACCCAAATAGCATCTTTCTTTTCGAAGACAGAGACAAACCCGATACAAAATCCATCATAAC
TCTATCCCATTTCCACTCTGGTATCATTACTAGTTGTAACAATCCTGATGGCACCTAATGTTCAG
CTTTAACTTGCTGACAAACCAAACATCTCGACACAAACTTAGAAATGTCTCGTTTCATGCCCGAC
CACCAGTATAATTACTTCAAATCATTATACATTTTTGTCCTCCCCAAATGAACAGATAAACAACC
ACTGTTACAACTGATTTGAAATTTAATGTTTAG
Found at i:93081235 original size:8 final size:8
Alignment explanation
Indices: 93081222--93081266 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
93081212 TCGACAAAGC
93081222 CGAAATGT
1 CGAAATGT
93081230 CGAAATGT
1 CGAAATGT
93081238 CGAAATGT
1 CGAAATGT
*
93081246 CGAAAAGT
1 CGAAATGT
*
93081254 CGAAATGC
1 CGAAATGT
93081262 CGAAA
1 CGAAA
93081267 AGCCAAAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (8 bp):
CGAAATGT
Found at i:93081243 original size:16 final size:16
Alignment explanation
Indices: 93081212--93081268 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
93081202 ACACAGTAGA
*
93081212 TCGACAAAGCCGAAATG
1 TCGA-AAAGTCGAAATG
*
93081229 TCGAAATGTCGAAATG
1 TCGAAAAGTCGAAATG
93081245 TCGAAAAGTCGAAATG
1 TCGAAAAGTCGAAATG
*
93081261 CCGAAAAG
1 TCGAAAAG
93081269 CCAAAAGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
16 32 0.89
17 4 0.11
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.16
Consensus pattern (16 bp):
TCGAAAAGTCGAAATG
Found at i:93081526 original size:28 final size:28
Alignment explanation
Indices: 93081495--93081561 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
93081485 ACTATGAAAC
* * * *
93081495 TGATTGAGCCTGGTGGGCTATGTGAATG
1 TGATTGGGCCTGATGGGCCATATGAATG
*
93081523 TGATTGGGCCCGATGGGCCATATGAATG
1 TGATTGGGCCTGATGGGCCATATGAATG
*
93081551 AGATTGGGCCT
1 TGATTGGGCCT
93081562 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.19, C:0.15, G:0.37, T:0.28
Consensus pattern (28 bp):
TGATTGGGCCTGATGGGCCATATGAATG
Found at i:93084067 original size:12 final size:12
Alignment explanation
Indices: 93084046--93084083 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
93084036 CACACGCCCA
*
93084046 TGTGCCAGGCCG
1 TGTGCAAGGCCG
93084058 TGTGCAAGGCCG
1 TGTGCAAGGCCG
93084070 TGTGCAAGGCCG
1 TGTGCAAGGCCG
93084082 TG
1 TG
93084084 CCAATCCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.18
Consensus pattern (12 bp):
TGTGCAAGGCCG
Found at i:93089373 original size:17 final size:17
Alignment explanation
Indices: 93089351--93089384 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93089341 AAAGTATGGT
93089351 AATTATATGCCATTGAA
1 AATTATATGCCATTGAA
*
93089368 AATTATATGTCATTGAA
1 AATTATATGCCATTGAA
93089385 TGAAATATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (17 bp):
AATTATATGCCATTGAA
Found at i:93090073 original size:2 final size:2
Alignment explanation
Indices: 93090066--93090098 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
93090056 AAAGATTCTA
93090066 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93090099 CAGACATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:93104763 original size:45 final size:46
Alignment explanation
Indices: 93104712--93104836 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
93104702 TGGTTGAGCA
*
93104712 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
93104757 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
93104803 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93104837 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 34 0.47
46 39 0.53
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:93112261 original size:46 final size:46
Alignment explanation
Indices: 93112208--93112330 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 46
93112198 TTGAGCATAT
* *
93112208 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGCCC
* * *
93112254 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGCCC
*
93112300 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
93112331 GGGGCGGGTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGCCC
Found at i:93114121 original size:26 final size:26
Alignment explanation
Indices: 93114091--93114143 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
93114081 TTTATAGTTT
93114091 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
93114117 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
93114143 T
1 T
93114144 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:93117194 original size:36 final size:36
Alignment explanation
Indices: 93117147--93117222 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
93117137 CTCTATATTT
*
93117147 TGGTATGTTTCGAATGGATTAGCTCTTATGAGCGTC
1 TGGTATGTTTCGAATGGATTAGCTCTTATGAGCATC
*
93117183 TGGTATGTTTCGGATGGATTAGCTCTTATGAGCATC
1 TGGTATGTTTCGAATGGATTAGCTCTTATGAGCATC
93117219 TGGT
1 TGGT
93117223 GCATTTTGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.18, C:0.13, G:0.29, T:0.39
Consensus pattern (36 bp):
TGGTATGTTTCGAATGGATTAGCTCTTATGAGCATC
Found at i:93123152 original size:20 final size:19
Alignment explanation
Indices: 93123101--93123152 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
93123091 TTTGATGGGA
*
93123101 TAAAT-TTTAAAAATAATT
1 TAAATATTTAAAAGTAATT
*
93123119 TTAATATATT-AAAGTAAATT
1 TAAATAT-TTAAAAGT-AATT
93123139 TAAATATTTAAAAG
1 TAAATATTTAAAAG
93123153 AGTTATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.15
19 7 0.26
20 16 0.59
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
TAAATATTTAAAAGTAATT
Found at i:93128469 original size:11 final size:11
Alignment explanation
Indices: 93128455--93128504 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
93128445 GCTCTTTTTC
93128455 TTTCCTTTGTT
1 TTTCCTTTGTT
*
93128466 TTT-CTTTGGGT
1 TTTCCTTT-GTT
93128477 TTT-CTTTGTT
1 TTTCCTTTGTT
93128487 TTTCCTTT-TAT
1 TTTCCTTTGT-T
93128498 TTTCCTT
1 TTTCCTT
93128505 AGGATTGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 10 0.29
11 24 0.71
ACGTcount: A:0.02, C:0.16, G:0.10, T:0.72
Consensus pattern (11 bp):
TTTCCTTTGTT
Found at i:93128471 original size:21 final size:20
Alignment explanation
Indices: 93128447--93128504 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 20
93128437 CTATGAGTGC
93128447 TCTTTTTCTTTCCTTTGTTTT
1 TCTTTTT-TTTCCTTTGTTTT
*
93128468 TCTTTGGGTTTT-CTTTGTTTT
1 TCTTT--TTTTTCCTTTGTTTT
93128489 TCCTTTTATTTTCCTT
1 T-CTTTT-TTTTCCTT
93128505 AGGATTGAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
21 19 0.63
22 10 0.33
23 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.09, T:0.72
Consensus pattern (20 bp):
TCTTTTTTTTCCTTTGTTTT
Found at i:93138047 original size:49 final size:49
Alignment explanation
Indices: 93137975--93138072 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
93137965 GAACACATAC
93137975 AAAATTTCTCTAAAATTTAAACATTCTTCCAACAGGTACAGGTCACACG
1 AAAATTTCTCTAAAATTTAAACATTCTTCCAACAGGTACAGGTCACACG
93138024 AAAATTTCTCTAAAATTTAAACATTCTTCCAACAGGTACAGGTCACACG
1 AAAATTTCTCTAAAATTTAAACATTCTTCCAACAGGTACAGGTCACACG
93138073 CCCGTGTGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (49 bp):
AAAATTTCTCTAAAATTTAAACATTCTTCCAACAGGTACAGGTCACACG
Done.