Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 303 of 410
Found at i:93842568 original size:54 final size:54
Alignment explanation
Indices: 93842503--93842887 Score: 285
Period size: 54 Copynumber: 7.1 Consensus size: 54
93842493 TTTCATCCTA
* * *
93842503 CAAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
* ** * * * *
93842557 CAATGGTATTTTCATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-TCAAGGGTATTTCAGTAATTTTGTAAAC
* *** ***
93842613 CAGGGGTATTTTGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
* ** ** *
93842667 C-AGTGGTATTTTGGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
* ** * * * *
93842720 TAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAG-CATTTT-TACAAA
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTA-AAC
* ** * **
93842773 CTA-GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
* * ** * *** * *
93842826 CGAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
93842880 CAAGGGTA
1 CAAGGGTA
93842888 AAACAGTAAT
Statistics
Matches: 257, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
52 31 0.12
53 58 0.23
54 117 0.46
55 14 0.05
56 37 0.14
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGTAAAC
Found at i:93842816 original size:79 final size:79
Alignment explanation
Indices: 93842616--93842846 Score: 302
Period size: 80 Copynumber: 2.9 Consensus size: 79
93842606 TGTAAATCAG
* * *
93842616 GGGTATTTTGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAACCAG-GGTATTTTAG
*
93842681 TAATTTTACAAACTA
65 CAATTTTACAAACTA
*
93842696 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAACC-AGGGTATTTTAG
*
93842761 CATTTTTACAAACTA
65 CAATTTTACAAACTA
** * ** **
93842776 -GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAACC-AGGGTATTTTAG
*
93842840 TAATTTT
65 CAATTTT
93842847 GTAAATCGAG
Statistics
Matches: 133, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 60 0.45
80 71 0.53
81 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAACCAGGGTATTTTAGC
AATTTTACAAACTA
Found at i:93842847 original size:27 final size:27
Alignment explanation
Indices: 93842503--93842887 Score: 217
Period size: 27 Copynumber: 14.3 Consensus size: 27
93842493 TTTCATCCTA
* * * * *
93842503 CAAGGGTATTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
93842530 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
93842557 CAATGGTATTTTCA-TAATTTTTAGAAAGT
1 CAAGGGTATTTT-AGTAA-TTTTATAAA-T
* *
93842586 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
93842613 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*** * * *
93842640 TGGGGGTATTTCAGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
93842666 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAT
* * *
93842693 CTAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
93842720 TAAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
93842747 CAAGGGTATTTTAGCATTTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
93842773 CTA-GGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAT
* * * *
93842799 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
93842826 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** * *
93842853 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
93842880 CAAGGGTA
1 CAAGGGTA
93842888 AAACAGTAAT
Statistics
Matches: 288, Mismatches: 58, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
25 16 0.06
26 29 0.10
27 215 0.75
28 14 0.05
29 13 0.05
30 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:93842888 original size:27 final size:27
Alignment explanation
Indices: 93842838--93842968 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
93842828 AGGGTATTTT
*
93842838 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
93842865 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
93842892 AGTAATTCTATAAATCGAGGTTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
93842919 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
93842946 GGTAATTCTATAAATTGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
93842969 CTTTGGTAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:93842995 original size:54 final size:54
Alignment explanation
Indices: 93842811--93842968 Score: 199
Period size: 54 Copynumber: 2.9 Consensus size: 54
93842801 AGGGTATTTT
* * **** * *
93842811 GGTAATTTTGTAAACCGAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
* * *
93842865 AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGTTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
* *
93842919 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
93842969 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:93843005 original size:81 final size:81
Alignment explanation
Indices: 93842797--93843006 Score: 213
Period size: 81 Copynumber: 2.6 Consensus size: 81
93842787 AATTTTACTG
* * * * *
93842797 ATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
*
93842862 AACAGTAATTCTGTAA
66 AACAGTAATTCTATAA
* **** * * *** *
93842878 ATCAAGGGTAAAACAGTAATTCTATAAATCGAGGTTAAAACGGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
*
93842943 AACGGTAATTCTATAA
66 AACAGTAATTCTATAA
* * * * *
93842959 ATTGAGGGTACTTTGGTAATTTTACAATTTGAGGGTATTTCAGTAATT
1 ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATT
93843007 TGGTAAACTA
Statistics
Matches: 95, Mismatches: 34, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAA
AACAGTAATTCTATAA
Found at i:93845201 original size:13 final size:13
Alignment explanation
Indices: 93845183--93845208 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93845173 TTTGGGTGTA
93845183 AAGGAAAGCTAAG
1 AAGGAAAGCTAAG
93845196 AAGGAAAGCTAAG
1 AAGGAAAGCTAAG
93845209 CCCAAGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.31, T:0.08
Consensus pattern (13 bp):
AAGGAAAGCTAAG
Found at i:93847630 original size:14 final size:14
Alignment explanation
Indices: 93847611--93847637 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
93847601 CATAATCGAT
93847611 AAAATTTTCATATC
1 AAAATTTTCATATC
93847625 AAAATTTTCATAT
1 AAAATTTTCATAT
93847638 GGCATTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATTTTCATATC
Found at i:93855713 original size:93 final size:93
Alignment explanation
Indices: 93855605--93855774 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
93855595 GCCCATAAGT
* *** *
93855605 GAACTCGAACTCAACTCAGCGAGCTT-GGGTGTTCGGATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
93855669 ACGAGCTCGGATGCCTAGTTAGATCTCCC
65 ACGAGCTCGGATGCCTAGTTAGATCTCCC
*
93855698 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
93855763 CGAGTTCGGATG
66 CGAGCTCGGATG
93855775 TCCAAACATC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTAGATCTCCC
Found at i:93855765 original size:46 final size:45
Alignment explanation
Indices: 93855597--93855772 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
93855587 TGTAACCCGC
* * ***
93855597 CCATAAGTGAACTCGAACTCAACTCAGCGAGCTT-GGGTGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTC-GAT
* *
93855643 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTAGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGAT
***
93855693 -C-T-CCCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCG-AT
93855736 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93855773 TGTCCAAACA
Statistics
Matches: 105, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAT
Found at i:93855791 original size:46 final size:45
Alignment explanation
Indices: 93855648--93855791 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
93855638 CGGATCCATA
* *
93855648 AGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCTAGTTAGAT-CT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCC-A---ACATCCT
*** ** * *
93855695 CCCGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCAACATCC-T
93855740 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCC-AACATCCT
93855787 AGTGA
1 AGTGA
93855792 CATGTCACTT
Statistics
Matches: 75, Mismatches: 16, Indels: 13
0.72 0.15 0.12
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 36 0.48
47 29 0.39
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCAACATCCT
Found at i:93858271 original size:14 final size:15
Alignment explanation
Indices: 93858247--93858283 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
93858237 GTTTGTGGTA
93858247 TAAGAGTTTTGAG-TT
1 TAAG-GTTTTGAGATT
93858262 TAAGGTTTTGAGATT
1 TAAGGTTTTGAGATT
93858277 TAAGGTT
1 TAAGGTT
93858284 CAAAGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (15 bp):
TAAGGTTTTGAGATT
Found at i:93858317 original size:20 final size:20
Alignment explanation
Indices: 93858288--93858363 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
93858278 AAGGTTCAAA
*
93858288 GTTTATGGTTTAGGGTTAGG
1 GTTTAGGGTTTAGGGTTAGG
* *
93858308 GTTTAGGGTTTAAGGTTTTA-T
1 GTTTAGGGTTT-AGG-GTTAGG
* * * *
93858329 GTCTATGGCTTAGGTTTAGG
1 GTTTAGGGTTTAGGGTTAGG
93858349 GTTTAGGGTTTAGGG
1 GTTTAGGGTTTAGGG
93858364 AAGATCAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
19 4 0.10
20 24 0.57
21 11 0.26
22 3 0.07
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.45
Consensus pattern (20 bp):
GTTTAGGGTTTAGGGTTAGG
Found at i:93858323 original size:41 final size:41
Alignment explanation
Indices: 93858275--93858360 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
93858265 GGTTTTGAGA
* *
93858275 TTTAAGGTTCAAAGTTTATGGTTTAGGGTTAGGGTTTAGGG
1 TTTAAGGTTCAAAGTCTATGGCTTAGGGTTAGGGTTTAGGG
** * *
93858316 TTTAAGGTTTTATGTCTATGGCTTAGGTTTAGGGTTTAGGG
1 TTTAAGGTTCAAAGTCTATGGCTTAGGGTTAGGGTTTAGGG
93858357 TTTA
1 TTTA
93858361 GGGAAGATCA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.20, C:0.03, G:0.31, T:0.45
Consensus pattern (41 bp):
TTTAAGGTTCAAAGTCTATGGCTTAGGGTTAGGGTTTAGGG
Found at i:93858353 original size:7 final size:7
Alignment explanation
Indices: 93858288--93858363 Score: 68
Period size: 7 Copynumber: 11.1 Consensus size: 7
93858278 AAGGTTCAAA
*
93858288 GTTTATG
1 GTTTAGG
93858295 GTTTAGG
1 GTTTAGG
93858302 G-TTAGG
1 GTTTAGG
93858308 GTTTAGG
1 GTTTAGG
93858315 GTTTAAGG
1 GTTT-AGG
* *
93858323 TTTTA-T
1 GTTTAGG
* *
93858329 GTCTATG
1 GTTTAGG
*
93858336 GCTTA-G
1 GTTTAGG
93858342 GTTTAGG
1 GTTTAGG
93858349 GTTTAGG
1 GTTTAGG
93858356 GTTTAGG
1 GTTTAGG
93858363 G
1 G
93858364 AAGATCAAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
6 14 0.25
7 36 0.64
8 6 0.11
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:93859640 original size:25 final size:27
Alignment explanation
Indices: 93859589--93859643 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
93859579 AAATTTGTAA
* * *
93859589 CCCAACCTTTTTTCCTCTTCTTTTTTC
1 CCCAACCTTTTCTCCTCTTATTCTTTC
93859616 CCCAACCTTTTCT-C-CTTATTCTTTC
1 CCCAACCTTTTCTCCTCTTATTCTTTC
93859641 CCC
1 CCC
93859644 CCCCCCGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 12 0.48
26 1 0.04
27 12 0.48
ACGTcount: A:0.09, C:0.42, G:0.00, T:0.49
Consensus pattern (27 bp):
CCCAACCTTTTCTCCTCTTATTCTTTC
Found at i:93859645 original size:27 final size:27
Alignment explanation
Indices: 93859589--93859646 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
93859579 AAATTTGTAA
* * **
93859589 CCCAACCTTTTTTCCTCTTCTTTTTTC
1 CCCAACCTTTTCTCCTATTCTTTTCCC
*
93859616 CCCAACCTTTTCTCCTTATTCTTTCCCC
1 CCCAACCTTTTCTCC-TATTCTTTTCCC
93859644 CCC
1 CCC
93859647 CCCGAAATCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.47
Consensus pattern (27 bp):
CCCAACCTTTTCTCCTATTCTTTTCCC
Found at i:93859867 original size:10 final size:10
Alignment explanation
Indices: 93859848--93859882 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
93859838 GAAAAATGGA
*
93859848 TATGGGTGTT
1 TATGGTTGTT
93859858 TATGGTTGTT
1 TATGGTTGTT
93859868 TATGGTTGTT
1 TATGGTTGTT
*
93859878 CATGG
1 TATGG
93859883 CTATTCACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.11, C:0.03, G:0.34, T:0.51
Consensus pattern (10 bp):
TATGGTTGTT
Found at i:93861260 original size:43 final size:42
Alignment explanation
Indices: 93861212--93861314 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 42
93861202 CAATACTGAC
* ** * *
93861212 GTCCCAGACGTGGTCTTACATGTA-ATTGAATGTCGATGCCTAT
1 GTCCCAGACATGGTCTTACATG-ACATCAAATAT-GATGCCGAT
*
93861255 GTCCCAGACAAGGTCTTACATGACATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACATGACATCAAATATGATGCCGAT
93861297 GTCCCAGACATGGTCTTA
1 GTCCCAGACATGGTCTTA
93861315 TACGTAAATC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGACATCAAATATGATGCCGAT
Found at i:93863627 original size:13 final size:14
Alignment explanation
Indices: 93863611--93863639 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93863601 TTTTAAATAT
93863611 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
93863624 TTATAATGGTTTAA
1 TTATAATGGTTTAA
93863638 TT
1 TT
93863640 CATCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:93864450 original size:43 final size:43
Alignment explanation
Indices: 93864398--93864621 Score: 218
Period size: 43 Copynumber: 5.2 Consensus size: 43
93864388 AAGCACTACC
* * * *
93864398 AAAGCTCACGTTTTTTAGCGGCATTTATGTGAAAAGAGCTGCT
1 AAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGAGCTGCT
* * ** **
93864441 AAAGGTCACGTTCTTCAGCAGCGTTTGTGTGAAAAGTTCCACT
1 AAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGAGCTGCT
*
93864484 AAAGGTCACATTCTTTAGCGGCGTTTGTGTG-AAAG-GCTCCGCT
1 AAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGAGCT--GCT
* * * * * * * *
93864527 AAAGATCACATTCTTTAGTGGCTTTTTTGTGAAAGGCGTTGCT
1 AAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGAGCTGCT
* * *
93864570 CAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCCGCT
1 AAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGAGCTGCT
93864613 AAAGGTCAC
1 AAAGGTCAC
93864622 TTTTTTAACA
Statistics
Matches: 145, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 135 0.93
44 3 0.02
45 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
AAAGGTCACGTTCTTTAGCGGCGTTTGTGTGAAAAGAGCTGCT
Found at i:93882464 original size:45 final size:45
Alignment explanation
Indices: 93882400--93882486 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
93882390 CCAAAACATG
93882400 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
* *
93882445 TGTCACATATATCATGAACTCAGACCACAACTCAATGGGTTC
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTC
93882487 AGATTACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:93883609 original size:13 final size:13
Alignment explanation
Indices: 93883588--93883658 Score: 72
Period size: 13 Copynumber: 5.5 Consensus size: 13
93883578 AAATTTTTCC
*
93883588 AAAGCACTTCTTA
1 AAAGCACTTCTCA
*
93883601 AAAGTACTTCTCA
1 AAAGCACTTCTCA
*
93883614 AAAGCACTTTTCCA
1 AAAGCACTTCT-CA
* *
93883628 CAA-CACTTTTCA
1 AAAGCACTTCTCA
*
93883640 AAAGCACTTTTCA
1 AAAGCACTTCTCA
93883653 AAAGCA
1 AAAGCA
93883659 ATGAAGAACT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
12 4 0.08
13 42 0.84
14 4 0.08
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.28
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:93883635 original size:39 final size:39
Alignment explanation
Indices: 93883582--93883658 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
93883572 ACACTTAAAT
*
93883582 TTTTCCAAAGCACTTCTT-AAAAGTACTTCTCAAAAGCAC
1 TTTTCCAAAGCACTT-TTCAAAAGCACTTCTCAAAAGCAC
*
93883621 TTTTCCACAA-CACTTTTCAAAAGCACTTTTCAAAAGCA
1 TTTTCCA-AAGCACTTTTCAAAAGCACTTCTCAAAAGCA
93883659 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 2 0.06
39 30 0.88
40 2 0.06
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (39 bp):
TTTTCCAAAGCACTTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:93888905 original size:40 final size:39
Alignment explanation
Indices: 93888755--93888926 Score: 245
Period size: 39 Copynumber: 4.4 Consensus size: 39
93888745 GAATGTTCGA
*
93888755 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
93888794 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
93888833 ATGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * *
93888872 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTT
* * *
93888912 ATCATAACCGGGCTA
1 GTGATATCCGGGCTA
93888927 TGTTCCGAAG
Statistics
Matches: 118, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.74
40 31 0.26
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:93902783 original size:41 final size:41
Alignment explanation
Indices: 93902738--93902855 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
93902728 TGAAAGATAA
93902738 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
93902779 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93902809 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
93902850 ATGTAG
1 ATGTAG
93902856 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:93902794 original size:71 final size:71
Alignment explanation
Indices: 93902706--93902869 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93902696 GAGATGTATC
93902706 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93902771 AGGACA
66 AGGACA
93902777 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
93902842 AGGACA
66 AGGACA
93902848 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
93902870 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:93904711 original size:40 final size:40
Alignment explanation
Indices: 93904666--93904833 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
93904656 CGGAATATAA
93904666 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
93904706 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
93904746 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
93904786 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
93904826 CCGGATAT
1 CCGGATAT
93904834 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:93931736 original size:40 final size:40
Alignment explanation
Indices: 93931692--93931767 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
93931682 ACTATGTTTG
* ** * *
93931692 GCACTTAATGTGCGTTTTATAATAGCTTCGGCTATAAATA
1 GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATAAATA
93931732 GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATA
1 GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATA
93931768 TGAGGCACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (40 bp):
GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATAAATA
Found at i:93931776 original size:40 final size:38
Alignment explanation
Indices: 93931691--93931803 Score: 95
Period size: 40 Copynumber: 2.8 Consensus size: 38
93931681 AACTATGTTT
* * *
93931691 GGCACTTAATGTGCGTTTTATAATAGCTTCGGCTATAAATA
1 GGCAC-TAATGTGCG-ATTAGAATAGCTTCAGCTAT-AATA
93931732 -GCACTCAATGTGCGAATTAGAATAGCTTCAGCTAT-ATGA
1 GGCACT-AATGTGCG-ATTAGAATAGCTTCAGCTATAAT-A
*
93931771 GGCACTAAGTGTGTGATATAGAGATAGCTTCAG
1 GGCACTAA-TGTGCGAT-TAGA-ATAGCTTCAG
93931804 TTTAATGTGA
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
38 2 0.03
39 6 0.10
40 43 0.70
41 10 0.16
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (38 bp):
GGCACTAATGTGCGATTAGAATAGCTTCAGCTATAATA
Found at i:93941570 original size:27 final size:26
Alignment explanation
Indices: 93941470--93941572 Score: 134
Period size: 26 Copynumber: 3.9 Consensus size: 26
93941460 AAATCACCGA
* * *
93941470 AATACCCCACTAGGGTAAAATAACTAT
1 AATACCCTA-TAGGGTAAAATGACTGT
*
93941497 AATACACTATAGGGTAAAATGACTGT
1 AATACCCTATAGGGTAAAATGACTGT
*
93941523 AATACCCTGTAGGGTAAAATGACTGT
1 AATACCCTATAGGGTAAAATGACTGT
*
93941549 AATACCCCTATAAGGTAAAATGAC
1 AATA-CCCTATAGGGTAAAATGAC
93941573 AATTTTGCTC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 43 0.64
27 24 0.36
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (26 bp):
AATACCCTATAGGGTAAAATGACTGT
Found at i:93941636 original size:81 final size:81
Alignment explanation
Indices: 93941551--93941751 Score: 253
Period size: 81 Copynumber: 2.5 Consensus size: 81
93941541 ATGACTGTAA
* * *
93941551 TACCCCTATAAGGTAAAATGACAATTTTGCTCTTATGTGGCAAAATGACCATTTTGCCCTTATAT
1 TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACCATTTTGCCCTTATAT
93941616 GTTAAAAT-GACAATTT
66 GTTAAAATGGA-AATTT
* * ** * * * *
93941632 TACCCTTATGTGATAAAATGATGATTTTGCCCTTATGTGGTAAAATGACTATTTTGTCCTTATGT
1 TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACCATTTTGCCCTTATAT
*
93941697 GTTAAAATGGAGATTT
66 GTTAAAATGGAAATTT
* *
93941713 T-TCCTTATCTGGTAAAATGACAATTTTGCCCTTATGTGG
1 TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGG
93941752 TAGGATGACT
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 33 0.32
81 67 0.66
82 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.39
Consensus pattern (81 bp):
TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACCATTTTGCCCTTATAT
GTTAAAATGGAAATTT
Found at i:93941766 original size:27 final size:27
Alignment explanation
Indices: 93941562--93941753 Score: 226
Period size: 27 Copynumber: 7.1 Consensus size: 27
93941552 ACCCCTATAA
*
93941562 GGTAAAATGACAATTTTGCTCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* * *
93941589 GGCAAAATGACCATTTTGCCCTTATAT
1 GGTAAAATGACAATTTTGCCCTTATGT
* *
93941616 GTTAAAATGACAATTTTACCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* **
93941643 GATAAAATGATGATTTTGCCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* *
93941670 GGTAAAATGACTATTTTGTCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* * * *
93941697 GTTAAAATGGA-GATTTT-TCCTTATCT
1 GGTAAAAT-GACAATTTTGCCCTTATGT
93941723 GGTAAAATGACAATTTTGCCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
93941750 GGTA
1 GGTA
93941754 GGATGACTTT
Statistics
Matches: 138, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
25 2 0.01
26 20 0.14
27 114 0.83
28 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACAATTTTGCCCTTATGT
Found at i:93942168 original size:18 final size:18
Alignment explanation
Indices: 93942101--93942175 Score: 71
Period size: 18 Copynumber: 4.1 Consensus size: 18
93942091 AGGACTTGCA
*
93942101 TACTGTTTACTGTTATTACA
1 TACTGTTTACTGTTATT--G
* *
93942121 TACT-ATTACTGCTATTG
1 TACTGTTTACTGTTATTG
* *
93942138 CACTTTTTACTGTTATTG
1 TACTGTTTACTGTTATTG
*
93942156 TACTGTTTACTGTTACTG
1 TACTGTTTACTGTTATTG
93942174 TA
1 TA
93942176 ATGGGCCAAG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
17 3 0.07
18 28 0.62
19 10 0.22
20 4 0.09
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TACTGTTTACTGTTATTG
Found at i:93945419 original size:18 final size:18
Alignment explanation
Indices: 93945396--93945432 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
93945386 GGTTCCTCCA
93945396 ACCTGCATTATAAGTATT
1 ACCTGCATTATAAGTATT
93945414 ACCTGCATTATAAGTATT
1 ACCTGCATTATAAGTATT
93945432 A
1 A
93945433 TTGTATGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (18 bp):
ACCTGCATTATAAGTATT
Found at i:93946811 original size:13 final size:13
Alignment explanation
Indices: 93946793--93946817 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93946783 GTTGTTTATT
93946793 AAACTAATTAACG
1 AAACTAATTAACG
93946806 AAACTAATTAAC
1 AAACTAATTAAC
93946818 TAACTAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24
Consensus pattern (13 bp):
AAACTAATTAACG
Found at i:93948839 original size:71 final size:71
Alignment explanation
Indices: 93948751--93948914 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93948741 CGATTTGTCT
93948751 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
93948816 CTTTCA
66 CTTTCA
93948822 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
93948887 CTTTCA
66 CTTTCA
93948893 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
93948915 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:93948952 original size:71 final size:70
Alignment explanation
Indices: 93948751--93948948 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
93948741 CGATTTGTCT
* * * *
93948751 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
93948816 CTTTCA
65 CTTTCA
* * * *
93948822 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
93948887 CTTTCA
65 CTTTCA
* *
93948893 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
93948949 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:93956130 original size:40 final size:40
Alignment explanation
Indices: 93956048--93956214 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
93956038 AAATTGAATG
* * ** *
93956048 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACT
* * * *
93956087 ATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* *
93956127 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
93956167 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
93956207 ATATCCGG
1 ATATCCGG
93956215 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 17 0.17
40 84 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:93962312 original size:71 final size:71
Alignment explanation
Indices: 93962224--93962387 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
93962214 CGATTTGTCT
93962224 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
93962289 CTTTCA
66 CTTTCA
93962295 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
93962360 CTTTCA
66 CTTTCA
93962366 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
93962388 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:93962425 original size:71 final size:70
Alignment explanation
Indices: 93962224--93962421 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
93962214 CGATTTGTCT
* * * *
93962224 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
93962289 CTTTCA
65 CTTTCA
* * * *
93962295 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
93962360 CTTTCA
65 CTTTCA
* *
93962366 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
93962422 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:93965518 original size:13 final size:12
Alignment explanation
Indices: 93965499--93965530 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
93965489 GGTTGTTTAT
93965499 TAACTAATTAAC
1 TAACTAATTAAC
93965511 TAAACTAATTAAC
1 T-AACTAATTAAC
93965524 TAACTAA
1 TAACTAA
93965531 ACTAAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (12 bp):
TAACTAATTAAC
Found at i:93969835 original size:29 final size:29
Alignment explanation
Indices: 93969774--93969872 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
93969764 AATGAGATTG
93969774 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
93969802 GCACTAAGTGTGTGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
93969831 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
93969859 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
93969873 GACTTACTGT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 33 0.49
29 33 0.49
30 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:93977839 original size:12 final size:12
Alignment explanation
Indices: 93977822--93977846 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93977812 GTGGAGATGC
93977822 ATCGAATATCAT
1 ATCGAATATCAT
93977834 ATCGAATATCAT
1 ATCGAATATCAT
93977846 A
1 A
93977847 CGAGATGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATCGAATATCAT
Found at i:93979111 original size:11 final size:11
Alignment explanation
Indices: 93979095--93979148 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
93979085 AAAGGAAAAT
*
93979095 AATAAAATTGA
1 AATAAAATAGA
93979106 AATAAAAATAGA
1 AAT-AAAATAGA
*
93979118 AATAAAAATAAA
1 AAT-AAAATAGA
*
93979130 AATAAAAATAAA
1 AAT-AAAATAGA
93979142 AATAAAA
1 AATAAAA
93979149 AGATAAGAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.17
12 33 0.82
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (11 bp):
AATAAAATAGA
Found at i:93979114 original size:6 final size:6
Alignment explanation
Indices: 93979105--93979149 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
93979095 AATAAAATTG
*
93979105 AAATAA AAATAG AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
93979150 GATAAGAGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:93986412 original size:39 final size:39
Alignment explanation
Indices: 93986319--93986467 Score: 156
Period size: 40 Copynumber: 3.8 Consensus size: 39
93986309 ATTGAATGAT
* * * * * *
93986319 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
* * *
93986358 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 -ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
* *
93986398 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT-A
*
93986438 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
93986468 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
38 3 0.03
39 29 0.32
40 57 0.63
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
Found at i:93986482 original size:40 final size:38
Alignment explanation
Indices: 93986313--93986499 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
93986303 TGAGAAATTG
* * *
93986313 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
93986353 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
93986390 AGTAGCTA-ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
93986429 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
93986469 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
93986500 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 34 0.29
40 78 0.66
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:93994283 original size:39 final size:39
Alignment explanation
Indices: 93994190--93994338 Score: 156
Period size: 40 Copynumber: 3.8 Consensus size: 39
93994180 ATTGAATGAT
* * * * * *
93994190 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
* * *
93994229 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 -ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
* *
93994269 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT-A
*
93994309 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
93994339 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
38 3 0.03
39 29 0.32
40 57 0.63
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
Found at i:93994353 original size:40 final size:38
Alignment explanation
Indices: 93994184--93994370 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
93994174 TGAGAAATTG
* * *
93994184 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
93994224 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
93994261 AGTAGCTA-ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
93994300 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
93994340 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
93994371 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 34 0.29
40 78 0.66
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:94002117 original size:26 final size:26
Alignment explanation
Indices: 94002086--94002153 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
94002076 CATATGCTGA
**
94002086 TACTGGCAGCTTTGCTGCGTTACTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
* *
94002112 TACTGGCAGCTTTCCTGCGACATTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
*
94002138 TACTGGCAGTTTTGCT
1 TACTGGCAGCTTTGCT
94002154 ACGATATTGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGACACTAT
Found at i:94009454 original size:40 final size:40
Alignment explanation
Indices: 94009326--94009456 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
94009316 TATGCTGGAA
* * * * *
94009326 ATTATATCCGAGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
94009366 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
94009406 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
94009446 ATTATATCCGG
1 ATTATATCCGG
94009457 TTATATTCCG
Statistics
Matches: 71, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:94013102 original size:26 final size:26
Alignment explanation
Indices: 94013027--94013103 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
94013017 ATATATACTG
* *
94013027 TTACTAGCAGCTTTGTTGCGTTACTA
1 TTACTAGCAGCTTTGTTGCGATATTA
* * *
94013053 TTATTGGCAGCTTTGCTGCGATATTA
1 TTACTAGCAGCTTTGTTGCGATATTA
*
94013079 TTACTAGCAGCTTTGTTGTGATATT
1 TTACTAGCAGCTTTGTTGCGATATT
94013104 GGTGTGCTGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (26 bp):
TTACTAGCAGCTTTGTTGCGATATTA
Found at i:94017478 original size:54 final size:54
Alignment explanation
Indices: 94017390--94017492 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
94017380 GAAGCAGACG
* * *
94017390 CCCATGTCTCATGCTATGTAACCTTTAAACTAGGGACACATGGCCGTGTCCCAA
1 CCCATGTCTCACGCTATGTAACCTGTAAACTAGGGACACATGCCCGTGTCCCAA
* *
94017444 CCCATGTCCTCACGC-ATGTAACTCTGT-AAGTAGGGTCACATGCCCGTGT
1 CCCATGT-CTCACGCTATGTAAC-CTGTAAACTAGGGACACATGCCCGTGT
94017493 GTTGGCCGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
54 33 0.79
55 9 0.21
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (54 bp):
CCCATGTCTCACGCTATGTAACCTGTAAACTAGGGACACATGCCCGTGTCCCAA
Found at i:94027873 original size:19 final size:18
Alignment explanation
Indices: 94027836--94027879 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
94027826 ATACATACAG
94027836 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
94027853 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
94027872 TACTAATT
1 TAATAATT
94027880 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:94032255 original size:13 final size:13
Alignment explanation
Indices: 94032237--94032269 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
94032227 ATCCCTTATT
94032237 AATTTTATCCCCA
1 AATTTTATCCCCA
*
94032250 AATTTTATCCCTA
1 AATTTTATCCCCA
94032263 AATTTTA
1 AATTTTA
94032270 CCTATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.45
Consensus pattern (13 bp):
AATTTTATCCCCA
Found at i:94032351 original size:14 final size:14
Alignment explanation
Indices: 94032332--94032361 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
94032322 CTAATTTTTC
94032332 CCCCAAATCAAAAT
1 CCCCAAATCAAAAT
*
94032346 CCCCAAATCGAAAT
1 CCCCAAATCAAAAT
94032360 CC
1 CC
94032362 TTCCACCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13
Consensus pattern (14 bp):
CCCCAAATCAAAAT
Found at i:94032448 original size:14 final size:14
Alignment explanation
Indices: 94032429--94032472 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
94032419 ATTTCCTGCT
94032429 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
94032443 TCTCTAAATCTCCT
1 TCTCTAAATCTCCA
*
94032457 TCTCTAAATTTCCA
1 TCTCTAAATCTCCA
94032471 TC
1 TC
94032473 CCTTTGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.41
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:94035041 original size:46 final size:45
Alignment explanation
Indices: 94034991--94035164 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
94034981 TGTTTGGGCA
94034991 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
94035037 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
94035084 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
94035130 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
94035165 AGGCGGGTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:94035146 original size:93 final size:93
Alignment explanation
Indices: 94034987--94035158 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
94034977 AGGATGTTTG
* * *
94034987 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
94035052 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
94035080 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
94035145 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
94035159 ACTTATAGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:94037071 original size:40 final size:39
Alignment explanation
Indices: 94036985--94037168 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
94036975 AAATTGAATG
* * * * *
94036985 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
94037025 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
*
94037065 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
94037105 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
94037144 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
94037169 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 110 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:94045111 original size:40 final size:39
Alignment explanation
Indices: 94045025--94045208 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
94045015 AAATTGAATG
* * * * *
94045025 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
94045065 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
*
94045105 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
94045145 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
94045184 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
94045209 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 110 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:94049227 original size:15 final size:15
Alignment explanation
Indices: 94049207--94049275 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
94049197 GTATCTTGGG
94049207 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* **
94049222 TCTCTTTATTTTGGA
1 TTTCTTTATCCTGGA
* *
94049237 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
94049252 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
94049267 TTTCTTTAT
1 TTTCTTTAT
94049276 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.12, C:0.16, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:94049276 original size:30 final size:30
Alignment explanation
Indices: 94049198--94049285 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
94049188 CATAATATCG
* * * *
94049198 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
94049228 TATTTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
94049258 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
94049286 TATTATCTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
29 7 0.14
30 43 0.86
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:94049286 original size:14 final size:14
Alignment explanation
Indices: 94049207--94049286 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
94049197 GTATCTTGGG
*
94049207 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
94049222 TCTCTTTATTTTGGA
1 TTTCTTTA-TTCGGA
*
94049237 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
94049252 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
94049267 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
94049281 TTTCTT
1 TTTCTT
94049287 ATTATCTTTG
Statistics
Matches: 50, Mismatches: 12, Indels: 7
0.72 0.17 0.10
Matches are distributed among these distances:
14 11 0.22
15 37 0.74
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:94051722 original size:46 final size:45
Alignment explanation
Indices: 94051672--94051845 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 45
94051662 TGTTTGGGCA
94051672 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
94051718 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
94051765 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
94051811 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
94051846 AGGCGGGTTA
Statistics
Matches: 109, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:94051827 original size:93 final size:93
Alignment explanation
Indices: 94051668--94051839 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
94051658 AGGATGTTTG
* *
94051668 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
94051733 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
94051761 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
94051826 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
94051840 ACTTATAGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:94055700 original size:42 final size:43
Alignment explanation
Indices: 94055644--94055762 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 43
94055634 AGTGGTGACT
** * *
94055644 TTTAGCGACGTTTTTAAGGAAAGCGCCGTTAAA-AACACGACC
1 TTTAGCGGTGTTTTTGAGGAAAGCGCCGCTAAAGAACACGACC
* * * * * **
94055686 TTTATCGGTGTTTTTGTGGAAAGCACCGCTAAAGATCATGTTC
1 TTTAGCGGTGTTTTTGAGGAAAGCGCCGCTAAAGAACACGACC
*
94055729 TTTAGCGGTGTTTTTGGGGAAAGCGCCGCTAAAG
1 TTTAGCGGTGTTTTTGAGGAAAGCGCCGCTAAAG
94055763 GTCATGTTCT
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 26 0.42
43 36 0.58
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TTTAGCGGTGTTTTTGAGGAAAGCGCCGCTAAAGAACACGACC
Found at i:94055741 original size:43 final size:43
Alignment explanation
Indices: 94055685--94055870 Score: 182
Period size: 42 Copynumber: 4.4 Consensus size: 43
94055675 AAAACACGAC
* * *
94055685 CTTTATCGGTGTTTTTGTGGAAAGCACCGCTAAAGATCATGTT
1 CTTTAGCGGCGTTTTTGTGGAAAGCACCGCTAAAGGTCATGTT
* * *
94055728 CTTTAGCGGTGTTTTTGGGGAAAGCGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTTTTGTGGAAAGCACCGCTAAAGGTCATGTT
* * * *
94055771 CTTTAGCGGCG--TTTGTGGTGAAGCGCTGCTAAAGGTCATGCT
1 CTTTAGCGGCGTTTTTGTGG-AAAGCACCGCTAAAGGTCATGTT
** * *
94055813 CTTTAGTAGCATTTGTG-GGAAA-CTACCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTTTTGTGGAAAGC-ACCGCTAAAGGTCATGTT
* *
94055855 CTTTAGTGGCTTTTTT
1 CTTTAGCGGCGTTTTT
94055871 TACATAAACA
Statistics
Matches: 119, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
41 7 0.06
42 58 0.49
43 51 0.43
44 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTTGTGGAAAGCACCGCTAAAGGTCATGTT
Found at i:94055861 original size:42 final size:42
Alignment explanation
Indices: 94055698--94055860 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
94055688 TATCGGTGTT
* *
94055698 TTTGT-GGAAAGCACCGCTAAAGATCATGTTCTTTAGCGGTG
1 TTTGTGGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCG
* *
94055739 TTTTTGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
1 TTTGT-GGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCG
* * * ** *
94055782 TTTGTGGTG-AAGCGCTGCTAAAGGTCATGCTCTTTAGTAGCA
1 TTTGTGG-GAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCG
94055824 TTTGTGGGAAA-CTACCGCTAAAGGTCATGTTCTTTAG
1 TTTGTGGGAAAGC-ACCGCTAAAGGTCATGTTCTTTAG
94055861 TGGCTTTTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
41 6 0.06
42 60 0.58
43 38 0.37
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (42 bp):
TTTGTGGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCG
Found at i:94061139 original size:51 final size:49
Alignment explanation
Indices: 94060956--94061143 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 49
94060946 TAGCCAAAGC
* * *
94060956 TATCTGGTACGCATAGTAG-CTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
** * * * *
94061004 TATCCAGTACACGTAGTAGCCTGCACTTAGTACTACCCACGTGGCCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
94061054 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
94061105 TATCGGGTACGCATAATAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
94061144 TGCGACCTCA
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
48 15 0.13
49 22 0.19
50 42 0.37
51 34 0.30
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:94066550 original size:30 final size:30
Alignment explanation
Indices: 94066505--94066561 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
94066495 ATTTAATACG
*
94066505 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
94066535 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGCAAAATTACACTTTTGCCC
94066562 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:94076600 original size:28 final size:29
Alignment explanation
Indices: 94076532--94076640 Score: 116
Period size: 28 Copynumber: 3.9 Consensus size: 29
94076522 TGGGAAGTAG
*
94076532 TTGGGCCT-GATGGGCCATATGAATGTGA
1 TTGGGCCTAAATGGGCCATATGAATGTGA
* ** *
94076560 TTGGG-TTCGATGGGTCATATGAATGTGA
1 TTGGGCCTAAATGGGCCATATGAATGTGA
* * *
94076588 TTGGGCCT-AATGGGCTATGTGAATGAGA
1 TTGGGCCTAAATGGGCCATATGAATGTGA
*
94076616 TTGGGCCTAAATGGGCCAAATGAAT
1 TTGGGCCTAAATGGGCCATATGAAT
94076641 AATTGTGGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
27 1 0.01
28 52 0.78
29 14 0.21
ACGTcount: A:0.25, C:0.12, G:0.34, T:0.29
Consensus pattern (29 bp):
TTGGGCCTAAATGGGCCATATGAATGTGA
Found at i:94076970 original size:27 final size:27
Alignment explanation
Indices: 94076940--94077187 Score: 193
Period size: 27 Copynumber: 9.2 Consensus size: 27
94076930 TAATAAAGAG
*
94076940 AAATTACTGAAATACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
94076967 AAATTACCAAAATACCCCCGATTAGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
94076994 AAATTACTGGAATACCCTC-AATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
94077020 AAATTAGTGAAATACCCTGGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
94077047 AAATTA-TCAAAATA-CCTCCGATTTGTG
1 AAATTACT-GAAATACCCT-CGATTTGTA
* * *
94077074 AAATTACTAAAACACTCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
94077101 AAATTA-TCGAAATAACCC-CAAATTGTG
1 AAATTACT-GAAAT-ACCCTCGATTTGTA
** * * *
94077128 AAATTACCAAAACAGCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
94077155 AAATTACTGAAATACCC-CTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
94077182 AGAATT
1 A-AATT
94077188 GTTGTTTCTT
Statistics
Matches: 170, Mismatches: 40, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
26 29 0.17
27 131 0.77
28 10 0.06
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:94077139 original size:81 final size:81
Alignment explanation
Indices: 94076940--94077187 Score: 220
Period size: 80 Copynumber: 3.1 Consensus size: 81
94076930 TAATAAAGAG
* * * * * * **
94076940 AAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCCCGATTAGTAAAATTACTGGA
1 AAATTAGTGAAATACCCTCAAATTGTAAAATTACCAAAATACCTCCGATTTGTAAAATTACTAAA
* * *
94077005 ATACCCTC-AATTGTG
66 ACACCCTCGATTTGTA
** * * *
94077020 AAATTAGTGAAATACCCTGGATTTGTAAAATTATCAAAATACCTCCGATTTGTGAAATTACTAAA
1 AAATTAGTGAAATACCCTCAAATTGTAAAATTACCAAAATACCTCCGATTTGTAAAATTACTAAA
*
94077085 ACACTCTCGATTTGTA
66 ACACCCTCGATTTGTA
* * *
94077101 AAATTA-TCGAAATAACCC-CAAATTGTGAAATTACCAAAACAGCCT-CAATTTGTAAAATTACT
1 AAATTAGT-GAAAT-ACCCTCAAATTGTAAAATTACCAAAATA-CCTCCGATTTGTAAAATTACT
94077163 GAAATAC-CCCT-GATTTGTA
63 -AAA-ACACCCTCGATTTGTA
94077182 AGAATT
1 A-AATT
94077188 GTTGTTTCTT
Statistics
Matches: 139, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
80 63 0.45
81 57 0.41
82 17 0.12
83 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (81 bp):
AAATTAGTGAAATACCCTCAAATTGTAAAATTACCAAAATACCTCCGATTTGTAAAATTACTAAA
ACACCCTCGATTTGTA
Found at i:94077167 original size:54 final size:53
Alignment explanation
Indices: 94076940--94077172 Score: 220
Period size: 54 Copynumber: 4.3 Consensus size: 53
94076930 TAATAAAGAG
* * * * * *
94076940 AAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCCCGATTAGTA
1 AAATTACTGAAATACCC-CGAATTGTGAAATTACCAAAACACCCTCGATTTGTA
* *** * *
94076994 AAATTACTGGAATACCCTC-AATTGTGAAATTAGTGAAATACCCTGGATTTGTA
1 AAATTACTGAAATACCC-CGAATTGTGAAATTACCAAAACACCCTCGATTTGTA
* * * *
94077047 AAATTA-TCAAAATACCTCCGATTTGTGAAATTACTAAAACACTCTCGATTTGTA
1 AAATTACT-GAAATACC-CCGAATTGTGAAATTACCAAAACACCCTCGATTTGTA
* * *
94077101 AAATTA-TCGAAATAACCCCAAATTGTGAAATTACCAAAACAGCCTCAATTTGTA
1 AAATTACT-GAAAT-ACCCCGAATTGTGAAATTACCAAAACACCCTCGATTTGTA
94077155 AAATTACTGAAATACCCC
1 AAATTACTGAAATACCCC
94077173 TGATTTGTAA
Statistics
Matches: 149, Mismatches: 25, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 43 0.29
54 101 0.68
55 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACTGAAATACCCCGAATTGTGAAATTACCAAAACACCCTCGATTTGTA
Found at i:94082496 original size:2 final size:2
Alignment explanation
Indices: 94082489--94082516 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
94082479 GTTTGGATGA
94082489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94082517 GCATTCGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94084421 original size:46 final size:47
Alignment explanation
Indices: 94084371--94084469 Score: 137
Period size: 46 Copynumber: 2.1 Consensus size: 47
94084361 TTAGGATTTT
* *
94084371 ATGTGATGAATGTGAACGTGTATATATGAGAT-AAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
* * * *
94084417 ATGTGATGATTGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
94084464 ATGTGA
1 ATGTGA
94084470 AATATATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 27 0.59
47 19 0.41
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
Found at i:94084544 original size:98 final size:100
Alignment explanation
Indices: 94084439--94084622 Score: 345
Period size: 98 Copynumber: 1.9 Consensus size: 100
94084429 TGAACATGCA
94084439 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT-AAGC
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
94084503 CGAA-GGCTAATGTGAAATATATATATGAGATATG
66 CGAATGGCTAATGTGAAATATATATATGAGATATG
94084537 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
*
94084602 CGAATGGCTAGTGTGAAATAT
66 CGAATGGCTAATGTGAAATAT
94084623 GTAGGCGATG
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
98 60 0.72
99 8 0.10
100 15 0.18
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (100 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
CGAATGGCTAATGTGAAATATATATATGAGATATG
Found at i:94084641 original size:50 final size:50
Alignment explanation
Indices: 94084439--94084622 Score: 345
Period size: 50 Copynumber: 3.7 Consensus size: 50
94084429 TGAACATGCA
94084439 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
94084489 TATATGTGGT-AAGCCGAA-GGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
94084537 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
*
94084587 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
94084623 GTAGGCGATG
Statistics
Matches: 131, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
48 40 0.31
49 16 0.12
50 75 0.57
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (50 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
Found at i:94084879 original size:37 final size:37
Alignment explanation
Indices: 94084771--94084879 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
94084761 TGGAAATATA
* *
94084771 TCCGGGTAAGGCCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94084808 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
94084845 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
94084880 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:94086186 original size:40 final size:40
Alignment explanation
Indices: 94086131--94086218 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
94086121 GAGAATTGAG
* * * *
94086131 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTACCCGGGCTAAGTCCCGAACAGCAATCGTGCC
* *
94086171 AGTGATGTATCCGGGCTAGGTCCCGAACAGCAATCGTGCC
1 AGTGATGTACCCGGGCTAAGTCCCGAACAGCAATCGTGCC
*
94086211 GGTGATGT
1 AGTGATGT
94086219 GTATTCGGGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.23
Consensus pattern (40 bp):
AGTGATGTACCCGGGCTAAGTCCCGAACAGCAATCGTGCC
Found at i:94086258 original size:43 final size:43
Alignment explanation
Indices: 94086204--94086468 Score: 476
Period size: 43 Copynumber: 6.2 Consensus size: 43
94086194 CGAACAGCAA
*
94086204 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCT
1 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
*
94086247 TTGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
1 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
94086290 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
1 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
*
94086333 TCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
1 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
*
94086376 TCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
1 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
*
94086419 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAACAGGCT
1 TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
*
94086462 TCATGCC
1 TCGTGCC
94086469 AGTAATTTGA
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 213 1.00
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
Found at i:94090554 original size:47 final size:47
Alignment explanation
Indices: 94090500--94090599 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
94090490 TTAGGATTTT
* * *
94090500 ATGTGATGAATGTGAACGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
* * * *
94090547 ATGTGATGATTGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
94090594 ATGTGA
1 ATGTGA
94090600 AATATATATA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
Found at i:94090772 original size:50 final size:50
Alignment explanation
Indices: 94090569--94090754 Score: 345
Period size: 50 Copynumber: 3.7 Consensus size: 50
94090559 TGAACATGCA
94090569 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
*
94090619 TATATGTGGTAAAGCCGAAGGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
94090669 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
* *
94090719 TATACGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
94090755 GTAGGCGATG
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 132 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (50 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
Found at i:94091049 original size:37 final size:37
Alignment explanation
Indices: 94090904--94091048 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
94090894 GGAAATATAT
* *
94090904 TCCGGGTAAGGCCCGATGACTACGTGTGGAGATTATA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
94090941 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
94090978 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
94091015 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
94091049 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:94095328 original size:27 final size:27
Alignment explanation
Indices: 94095298--94095350 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
94095288 TACAGTACAA
94095298 GGGTATTCCAATAATTTTACAAATCGG
1 GGGTATTCCAATAATTTTACAAATCGG
* * *
94095325 GGGTGTTTCAGTAATTTTACAAATCG
1 GGGTATTCCAATAATTTTACAAATCG
94095351 AGAGTATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (27 bp):
GGGTATTCCAATAATTTTACAAATCGG
Found at i:94095360 original size:27 final size:27
Alignment explanation
Indices: 94095300--94095360 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
94095290 CAGTACAAGG
* * *
94095300 GTATTCCAATAATTTTACAAATCGGGG
1 GTATTTCAATAATTTTACAAATCGAGA
* *
94095327 GTGTTTCAGTAATTTTACAAATCGAGA
1 GTATTTCAATAATTTTACAAATCGAGA
94095354 GTATTTC
1 GTATTTC
94095361 GCAAGCACGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
GTATTTCAATAATTTTACAAATCGAGA
Found at i:94100053 original size:16 final size:15
Alignment explanation
Indices: 94100032--94100062 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
94100022 TGCAATTTAG
94100032 TCCTAATTACTCAAAA
1 TCCTAATTACT-AAAA
94100048 TCCTAATTACTAAAA
1 TCCTAATTACTAAAA
94100063 CGATAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (15 bp):
TCCTAATTACTAAAA
Found at i:94101164 original size:19 final size:20
Alignment explanation
Indices: 94101137--94101174 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
94101127 GTGGAGTGCA
* *
94101137 AGGGTGAGA-AGATGGGAGG
1 AGGGAGAGAGAGAGGGGAGG
94101156 AGGGAGAGAGAGAGGGGAG
1 AGGGAGAGAGAGAGGGGAG
94101175 AAAACTGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.61, T:0.05
Consensus pattern (20 bp):
AGGGAGAGAGAGAGGGGAGG
Found at i:94107977 original size:41 final size:41
Alignment explanation
Indices: 94107918--94108118 Score: 139
Period size: 41 Copynumber: 4.9 Consensus size: 41
94107908 CGATATCTTG
* *
94107918 CACACTAAGTGCCAATACATAGTCGAAGCTGT-TACAATCTCA
1 CACACTAAGTGCC-ATACATAGACGAAGCTATCT-CAATCTCA
* *
94107960 CACACTAAGTGCCATACATAGACGAAGCTATCTCAGTTTCA
1 CACACTAAGTGCCATACATAGACGAAGCTATCTCAATCTCA
** * * *
94108001 CACACTAAGTGCCATATTTAGCCAAAGCTAT-TACGGATCT--
1 CACACTAAGTGCCATACATAGACGAAGCTATCT-C-AATCTCA
* * *
94108041 CACACTAAGTGCC--ACTATAGCCAAAGCTATCTCGAA--TCG
1 CACACTAAGTGCCATAC-ATAGACGAAGCTATCTC-AATCTCA
* * * *
94108080 CACATTAAGTGCCATATATAGTCGAAGTTATCTCTAATC
1 CACACTAAGTGCCATACATAGACGAAGCTATCTC-AATC
94108119 ATCGTCAAAC
Statistics
Matches: 128, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 28 0.22
40 31 0.24
41 51 0.40
42 16 0.12
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (41 bp):
CACACTAAGTGCCATACATAGACGAAGCTATCTCAATCTCA
Found at i:94108089 original size:39 final size:38
Alignment explanation
Indices: 94108001--94108097 Score: 124
Period size: 39 Copynumber: 2.5 Consensus size: 38
94107991 CTCAGTTTCA
* *
94108001 CACACTAAGTGCCATATTTAGCCAAAGCTATTACGGATCT
1 CACACTAAGTGCCATA--TAGCCAAAGCTATTACGAATCG
94108041 CACACTAAGTGCCACTATAGCCAAAGCTATCT-CGAATCG
1 CACACTAAGTGCCA-TATAGCCAAAGCTAT-TACGAATCG
*
94108080 CACATTAAGTGCCATATA
1 CACACTAAGTGCCATATA
94108098 TAGTCGAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
38 4 0.08
39 31 0.60
40 15 0.29
41 2 0.04
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (38 bp):
CACACTAAGTGCCATATAGCCAAAGCTATTACGAATCG
Found at i:94108112 original size:40 final size:40
Alignment explanation
Indices: 94107957--94108119 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 40
94107947 TGTTACAATC
* * * **
94107957 TCACACACTAAGTGCCATACATAGACGAAGCTATCTCAGTT
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTC-GAA
* *
94107998 TCACACACTAAGTGCCATATTTAGCCAAAGCTAT-TACGGA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCT-CGAA
* *
94108038 TCTCACACTAAGTGCCA-CTATAGCCAAAGCTATCTCGAA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
* * * * * *
94108077 TCGCACATTAAGTGCCATATATAGTCGAAGTTATCTCTAA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
94108117 TCA
1 TCA
94108120 TCGTCAAACA
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 32 0.32
40 38 0.38
41 31 0.31
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
Found at i:94110151 original size:44 final size:42
Alignment explanation
Indices: 94110016--94110169 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 42
94110006 CAATGCCAAC
* * * *
94110016 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATACC-ACT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATA-CGATGCCGA-T
* *
94110059 ATCCCAGACAG-GGTCTTACATGAAATCAAATACGATGCCGAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATACGATGCCGAT
*
94110101 GTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CGATGCTGAT
1 GTCCCAGACGTGGTCTTACACG-AAATCA-AA-TACGATGCCGAT
*
94110145 GTCCCAGACATGGTCTTACACGAAA
1 GTCCCAGACGTGGTCTTACACGAAA
94110170 ACACATATCG
Statistics
Matches: 97, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 37 0.38
44 33 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATACGATGCCGAT
Found at i:94115475 original size:42 final size:43
Alignment explanation
Indices: 94115385--94115477 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
94115375 GTCCAAGATG
* * *
94115385 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACACGAAATCAAATATCGACGCCACTGTCCCAGACA
* *
94115428 GGGTCTTACACGAAATCATATA-CGACGCCGA-TGTCCCAGACA
1 TGGTCTTACACGAAATCAAATATCGACGCC-ACTGTCCCAGACA
94115470 TGGTCTTA
1 TGGTCTTA
94115478 TACATAAATC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
42 24 0.56
43 19 0.44
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGAAATCAAATATCGACGCCACTGTCCCAGACA
Found at i:94118669 original size:44 final size:42
Alignment explanation
Indices: 94118611--94118714 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 42
94118601 TTTTGATATC
* *
94118611 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG-ATT
1 TGATTTCGTGTAAGACCACGTCTGGAACATCGGCATCGTATT
* *
94118652 TAAGATTTACGTTTAAGACCATGTCTGGAACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCACGTCTGGAACATCGGCATCGTATT
94118697 TGATTTTCGTGTAAGACC
1 TGA-TTTCGTGTAAGACC
94118715 CTATCTGGGA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.02
43 17 0.32
44 31 0.58
45 4 0.08
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGAACATCGGCATCGTATT
Found at i:94118733 original size:43 final size:42
Alignment explanation
Indices: 94118614--94118745 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 42
94118604 TGATATCTGA
94118614 TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-ATTTAAGAT
1 TTTCGTGTAAGACC-CTGTCTGGGACA-TGGCATCGTATTT--GAT
* * * *
94118658 TTACGTTTAAGACCATGTCTGGAACATCGGCATCGTATTTGAT
1 TTTCGTGTAAGACCCTGTCTGGGACAT-GGCATCGTATTTGAT
* * *
94118701 TTTCGTGTAAGACCCTATCTGGGATAGTGGCATCAATATTTGAT
1 TTTCGTGTAAGACCCTGTCTGGGACA-TGGCATC-GTATTTGAT
94118745 T
1 T
94118746 ACATGTAAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
43 30 0.42
44 38 0.53
45 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (42 bp):
TTTCGTGTAAGACCCTGTCTGGGACATGGCATCGTATTTGAT
Found at i:94122900 original size:39 final size:40
Alignment explanation
Indices: 94122856--94123022 Score: 243
Period size: 40 Copynumber: 4.2 Consensus size: 40
94122846 CCTTCGGAGT
*
94122856 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
94122895 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
94122935 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
94122974 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
94123014 TTAGCCCGG
1 TTAGCCCGG
94123023 TTATCAATCC
Statistics
Matches: 118, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 40 0.34
40 77 0.65
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:94122999 original size:79 final size:80
Alignment explanation
Indices: 94122856--94123022 Score: 243
Period size: 79 Copynumber: 2.1 Consensus size: 80
94122846 CCTTCGGAGT
* * *
94122856 TTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
94122920 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
* *
94122935 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGC
1 TTAGCCCGGATATAGCT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGC
94122997 ACAAATGCCTTCGGGAC
64 ACAAATGCCTTCGGGAC
94123014 TTAGCCCGG
1 TTAGCCCGG
94123023 TTATCAATCC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
78 1 0.01
79 50 0.62
80 29 0.36
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:94130237 original size:40 final size:40
Alignment explanation
Indices: 94130193--94130380 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
94130183 GCTACTAGCT
94130193 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
94130233 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
94130273 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
94130313 CAAATGCCTTC-GGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
94130352 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
94130381 CAATCCGAAT
Statistics
Matches: 140, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 104 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:94130376 original size:79 final size:80
Alignment explanation
Indices: 94130170--94130376 Score: 323
Period size: 80 Copynumber: 2.6 Consensus size: 80
94130160 CCTTCGGAGT
* *
94130170 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
94130233 CAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
* *
94130249 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
94130314 AAATGCCTTC-GGAC
66 AAATGCCTTCGGGAC
*
94130328 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
94130377 TTATCAATCC
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
78 1 0.01
79 53 0.45
80 64 0.54
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
AAATGCCTTCGGGAC
Found at i:94134329 original size:47 final size:45
Alignment explanation
Indices: 94134217--94134321 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 45
94134207 GTTAAAGATA
* *
94134217 CCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGTAAGGATC
1 CCATGTAAGACCATGTCAAGACATGGCATCGGCAAGGTAAGGATC
* * *
94134262 CCGTGTAAGACCATGTCAAGACATGGCATCGGCATTGATTAAGGA-C
1 CCATGTAAGACCATGTCAAGACATGGCATCGGCA-AG-GTAAGGATC
94134308 TCCATGTAAGACCA
1 -CCATGTAAGACCA
94134322 CATCAAGATG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
45 31 0.61
46 2 0.04
47 18 0.35
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (45 bp):
CCATGTAAGACCATGTCAAGACATGGCATCGGCAAGGTAAGGATC
Found at i:94134403 original size:47 final size:47
Alignment explanation
Indices: 94134344--94134512 Score: 295
Period size: 47 Copynumber: 3.6 Consensus size: 47
94134334 GAATTGTCAC
94134344 TAAGACAAGGATACCGA-GTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACC-ATGTAAGACCATGTTTGGAACATGGCATTTGG
*
94134391 TAATACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
94134438 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
94134485 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
94134513 CCAAGGCATG
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.01
47 116 0.99
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:94134549 original size:54 final size:54
Alignment explanation
Indices: 94134485--94134698 Score: 200
Period size: 54 Copynumber: 4.0 Consensus size: 54
94134475 TGGCATTTGG
* * *
94134485 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTA
* * * * * *
94134539 TAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAG-TTCTA
* * * * * *
94134594 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAATACATGGCATTGGTGAGTTC-A
1 TAAGG-TAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTA
* * * * *
94134647 TAAGGCAAGGATACCACGTAAGACAATGTCAAGACATGGCAA-TGGTAAGTTC
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGATAAGTTC
94134699 AAAAAAGAAA
Statistics
Matches: 133, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 38 0.29
54 46 0.35
55 41 0.31
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTA
Found at i:94134620 original size:55 final size:54
Alignment explanation
Indices: 94134491--94134687 Score: 227
Period size: 55 Copynumber: 3.6 Consensus size: 54
94134481 TTGGTAAGAT
* * * * *
94134491 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
94134545 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAG-TTCTATAAGGC
* * *
94134600 AAAGG-TCCCATGTAAGACCATGCCAATACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
94134653 AAGGATACCACGTAAGACAATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
94134688 ATGGTAAGTT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 41 0.34
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:94134684 original size:53 final size:54
Alignment explanation
Indices: 94134491--94134698 Score: 222
Period size: 53 Copynumber: 3.9 Consensus size: 54
94134481 TTGGTAAGAT
* * * *
94134491 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
94134545 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAG-TTCTATAAGGC
* * * *
94134600 AAAGG-TCCCATGTAAGACCATGCCAATACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
94134653 AAGGATACCACGTAAGACAATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
94134699 AAAAAAGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 40 0.31
55 41 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:94141659 original size:46 final size:44
Alignment explanation
Indices: 94141543--94141766 Score: 200
Period size: 46 Copynumber: 4.8 Consensus size: 44
94141533 GGGATAGGAT
94141543 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTAACTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTAACTCGTA
* *
94141589 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-A-CTCGTA
* * ** *
94141634 GGCTGATGCATGTCCCAGACGTGTCTTACACTAGCTTTCGTCTCACTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TT-AACTC-GTA
* *
94141682 -TCGATGCCATGTCCCGGACATGGTCTTACACTAGCTTAACTCGTAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTAACTCGT-A
* *
94141728 TGTGGCCGATGCATGTCCCATACATGTCGTACACTAGCT
1 ----GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
94141767 CACAATGTCC
Statistics
Matches: 143, Mismatches: 20, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
44 15 0.10
45 16 0.11
46 52 0.36
47 16 0.11
48 14 0.10
49 13 0.09
50 12 0.08
51 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTAACTCGTA
Found at i:94142127 original size:30 final size:30
Alignment explanation
Indices: 94142093--94142168 Score: 143
Period size: 30 Copynumber: 2.5 Consensus size: 30
94142083 CTATACTTGG
94142093 GCAAAATGACCATTTTGCCCTTAGACTTTT
1 GCAAAATGACCATTTTGCCCTTAGACTTTT
*
94142123 GCAAAATGACCATTTTGCCCTTGGACTTTT
1 GCAAAATGACCATTTTGCCCTTAGACTTTT
94142153 GCAAAATGACCATTTT
1 GCAAAATGACCATTTT
94142169 ACCCCTAGGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (30 bp):
GCAAAATGACCATTTTGCCCTTAGACTTTT
Found at i:94143357 original size:19 final size:19
Alignment explanation
Indices: 94143333--94143371 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
94143323 AATGATAAGT
94143333 TTATTTGTATAAGGCTTAC
1 TTATTTGTATAAGGCTTAC
94143352 TTATTTGTATAAGGCTTAC
1 TTATTTGTATAAGGCTTAC
94143371 T
1 T
94143372 AAGCTTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (19 bp):
TTATTTGTATAAGGCTTAC
Found at i:94147376 original size:2 final size:2
Alignment explanation
Indices: 94147369--94147398 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
94147359 GTCTCATGGC
94147369 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
94147399 CACAAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94147997 original size:83 final size:82
Alignment explanation
Indices: 94147856--94148038 Score: 228
Period size: 83 Copynumber: 2.2 Consensus size: 82
94147846 GACTACTCAA
*
94147856 TATCTCGCACACTAAGTGCCAATACATAGCCAAAGCTATTATAATCTCGCACACTAAGTGTCAAT
1 TATCTCGCACACTAAGTGCCAATACATAGCCAAAGCTATTATAATCTCCCACACTAAGTG-CAAT
*
94147921 ACATAGCCAAAGCTAT-T
65 ACATAGCAAAAGCTATCT
* * * * *
94147938 ATAATCTCGCACACTAAGTGCC-TTACATAGCCGAAGTTATCT-TAGTCTCCCACACTAAGTGCC
1 -T-ATCTCGCACACTAAGTGCCAATACATAGCCAAAGCTAT-TATAATCTCCCACACTAAGTGCA
*
94148001 ATATATAGCAAAAGCTATCT
63 ATACATAGCAAAAGCTATCT
*
94148021 TGTCTCGCACACTAAGTG
1 TATCTCGCACACTAAGTG
94148039 TCATATATAG
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
81 16 0.18
82 18 0.20
83 34 0.39
84 20 0.23
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (82 bp):
TATCTCGCACACTAAGTGCCAATACATAGCCAAAGCTATTATAATCTCCCACACTAAGTGCAATA
CATAGCAAAAGCTATCT
Found at i:94148056 original size:40 final size:42
Alignment explanation
Indices: 94147857--94148060 Score: 238
Period size: 42 Copynumber: 4.9 Consensus size: 42
94147847 ACTACTCAAT
94147857 ATCTCGCACACTAAGTGCCAATACATAGCCAAAGCTAT-TATA
1 ATCTCGCACACTAAGTGCC-ATACATAGCCAAAGCTATCTATA
*
94147899 ATCTCGCACACTAAGTGTCAATACATAGCCAAAGCTAT-TATA
1 ATCTCGCACACTAAGTG-CCATACATAGCCAAAGCTATCTATA
* * *
94147941 ATCTCGCACACTAAGTGCCTTACATAGCCGAAGTTATCT-TA
1 ATCTCGCACACTAAGTGCCATACATAGCCAAAGCTATCTATA
* * * *
94147982 GTCTCCCACACTAAGTGCCATATATAGCAAAAGCTATCT-T-
1 ATCTCGCACACTAAGTGCCATACATAGCCAAAGCTATCTATA
* * * * *
94148022 GTCTCGCACACTAAGTGTCATATATAGTCGAAGCTATCT
1 ATCTCGCACACTAAGTGCCATACATAGCCAAAGCTATCT
94148061 CGAATCACCG
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 34 0.24
41 51 0.36
42 57 0.40
43 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (42 bp):
ATCTCGCACACTAAGTGCCATACATAGCCAAAGCTATCTATA
Found at i:94154229 original size:11 final size:11
Alignment explanation
Indices: 94154213--94154237 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94154203 TCTTATGTAA
94154213 TTTTATTTTTG
1 TTTTATTTTTG
94154224 TTTTATTTTTG
1 TTTTATTTTTG
94154235 TTT
1 TTT
94154238 CTGTTCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTG
Found at i:94155451 original size:18 final size:17
Alignment explanation
Indices: 94155420--94155462 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
94155410 ATATGTTTAA
*
94155420 ATTTAATGTTGTATTTG
1 ATTTAATGTGGTATTTG
94155437 ATTTGAATGTGGTATTTG
1 ATTT-AATGTGGTATTTG
94155455 -TTT-ATGTG
1 ATTTAATGTG
94155463 ATTTATATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.21
17 7 0.29
18 12 0.50
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.56
Consensus pattern (17 bp):
ATTTAATGTGGTATTTG
Found at i:94163826 original size:29 final size:29
Alignment explanation
Indices: 94163784--94163842 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
94163774 AAGGAAAACT
*
94163784 GAGTTAGTTTATTTTATGTTTTAGTTGAA
1 GAGTTAGTTTATTTTAAGTTTTAGTTGAA
94163813 GAGTTAGTTTATTTTAAGTTTTAGTTGAA
1 GAGTTAGTTTATTTTAAGTTTTAGTTGAA
94163842 G
1 G
94163843 TATTCATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (29 bp):
GAGTTAGTTTATTTTAAGTTTTAGTTGAA
Found at i:94165221 original size:23 final size:23
Alignment explanation
Indices: 94165167--94165211 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
94165157 TGAACCAACG
*
94165167 TGAAAAGGATACAGCTTAGCTCA
1 TGAAAAGAATACAGCTTAGCTCA
94165190 TGAAAAGAATACAGCTTAGCTC
1 TGAAAAGAATACAGCTTAGCTC
94165212 TTGACGAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (23 bp):
TGAAAAGAATACAGCTTAGCTCA
Found at i:94174030 original size:24 final size:21
Alignment explanation
Indices: 94174003--94174049 Score: 58
Period size: 24 Copynumber: 2.1 Consensus size: 21
94173993 TTATTCTTAA
*
94174003 TTTAAATTTTTATTAATATAAGTT
1 TTTAAATTATT-TTAA-ATAA-TT
94174027 TTTAAATTATTTTAAATAATT
1 TTTAAATTATTTTAAATAATT
94174048 TT
1 TT
94174050 AGATGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 4 0.18
23 4 0.18
24 10 0.45
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTAAATTATTTTAAATAATT
Found at i:94183277 original size:14 final size:14
Alignment explanation
Indices: 94183258--94183286 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
94183248 TCTGCTTCCC
94183258 AAATATGCAGAAAA
1 AAATATGCAGAAAA
94183272 AAATATGCAGAAAA
1 AAATATGCAGAAAA
94183286 A
1 A
94183287 CTCAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AAATATGCAGAAAA
Found at i:94184598 original size:9 final size:9
Alignment explanation
Indices: 94184582--94184617 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
94184572 CTACGGTTGT
94184582 TGCAAATCC
1 TGCAAATCC
*
94184591 TACAAATCC
1 TGCAAATCC
94184600 TGCAAATCC
1 TGCAAATCC
94184609 TGCAAATCC
1 TGCAAATCC
94184618 AAATCCTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.36, C:0.33, G:0.08, T:0.22
Consensus pattern (9 bp):
TGCAAATCC
Found at i:94190715 original size:22 final size:22
Alignment explanation
Indices: 94190687--94190732 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
94190677 GTTTATTATC
* *
94190687 TATTATTTTCTATTCTTAGTTA
1 TATTATTTTATATTCCTAGTTA
*
94190709 TATTATTTTATTTTCCTAGTTA
1 TATTATTTTATATTCCTAGTTA
94190731 TA
1 TA
94190733 CTTGTCTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63
Consensus pattern (22 bp):
TATTATTTTATATTCCTAGTTA
Done.