Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 304 of 410
Found at i:94192505 original size:6 final size:6
Alignment explanation
Indices: 94192464--94192504 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
94192454 GACCATTAAG
*
94192464 TTTATT TTT-TT ATTTATT TTTATT TTTATT TTTATG TTTAT
1 TTTATT TTTATT -TTTATT TTTATT TTTATT TTTATT TTTAT
94192505 GGTTATTTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 2 0.06
6 28 0.88
7 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:94199830 original size:17 final size:17
Alignment explanation
Indices: 94199805--94199862 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
94199795 GGCAATGATG
*
94199805 CATTACTAGATGCCACT
1 CATTGCTAGATGCCACT
94199822 CATTGCTAGATGCCACT
1 CATTGCTAGATGCCACT
94199839 CATTGCTAGATGCCACT
1 CATTGCTAGATGCCACT
94199856 CATTGCT
1 CATTGCT
94199863 TGTAATGTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (17 bp):
CATTGCTAGATGCCACT
Found at i:94200351 original size:138 final size:138
Alignment explanation
Indices: 94200052--94200915 Score: 1391
Period size: 138 Copynumber: 6.3 Consensus size: 138
94200042 ATAGATAAAG
* *
94200052 TTAATATATGAATTTGATTTATACAAAATATTAATTGTATATATTTTATCGAAA-TTATTAATAT
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CCAAATTTATTAATAT
* * *
94200116 AAAAAATTATATTAATTAATTTCGGTCAAAA-ATAAAAGACATGGAAATTAATATTCTTTTGGAA
65 AAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAA
94200180 AGAATATAA
130 AGAATATAA
*
94200189 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * * *
94200254 AATAGTTATATTAATTAATTTTGGTCAAAATATAAAAAAAATGGAAATTAATATTCTTTTGGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
94200319 GAATATAA
131 GAATATAA
*
94200327 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
*
94200392 AATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
94200457 GAATATAA
131 GAATATAA
*
94200465 TTAATATATGAATTTGATTCATACGAAATATTAATTGTATAT-TTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * *
94200529 AATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTAGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
94200594 GAATATAA
131 GAATATAA
* *
94200602 TTAATATATG-ATTT-TTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * **
94200665 AACAGTTCTATTAATTAATTTCGGTCAAAATATAAGGGACATGAAAATTAATATTCTTTT-GAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
94200729 GGAATATAA
131 -GAATATAA
**
94200738 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* *
94200803 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGAAAATTATTATTCTTTTGGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
*
94200868 GAAAATAA
131 GAATATAA
* *
94200876 TTAATATAT-AGATTTTATTCATCCAAAATATTAATTGTAT
1 TTAATATATGA-ATTTGATTCATACAAAATATTAATTGTAT
94200916 TTATATAGAG
Statistics
Matches: 681, Mismatches: 38, Indels: 15
0.93 0.05 0.02
Matches are distributed among these distances:
135 28 0.04
136 101 0.15
137 192 0.28
138 356 0.52
139 4 0.01
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
GAATATAA
Found at i:94200543 original size:275 final size:275
Alignment explanation
Indices: 94200052--94200915 Score: 1398
Period size: 275 Copynumber: 3.1 Consensus size: 275
94200042 ATAGATAAAG
* *
94200052 TTAATATATGAATTTGATTTATACAAAATATTAATTGTATATATTTTATCGAAA-TTATTAATAT
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CCAAATTTATTAATAT
* *
94200116 AAAAAATTATATTAATTAATTTCGGTCAAAA-ATAAAAGACATGGAAATTAATATTCTTTTGGAA
65 AAAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAA
94200180 AGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTT
130 AGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATA-TTTTTACCAAATTT
* *
94200245 ATTAATATAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAAAAATGGAAATTAATATTC
194 ATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTC
94200310 TTTTGGAAAGAATATAA
259 TTTTGGAAAGAATATAA
*
94200327 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* *
94200392 AATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
66 AAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
*
94200457 GAATATAATTAATATATGAATTTGATTCATACGAAATATTAATTGTATATTTTTACCAAATTTAT
131 GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTACCAAATTTAT
* *
94200522 TAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTT
196 TAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTCTT
*
94200587 TTAGAAAGAATATAA
261 TTGGAAAGAATATAA
* *
94200602 TTAATATATG-ATTT-TTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * **
94200665 AACAGTTCTATTAATTAATTTCGGTCAAAATATAAGGGACATGAAAATTAATATTCTTTT-GAAA
66 AAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
**
94200729 GGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTT
131 -GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT-TTTTACCAAATTT
* * *
94200794 ATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGAAAATTATTATTC
194 ATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTC
*
94200859 TTTTGGAAAGAAAATAA
259 TTTTGGAAAGAATATAA
* *
94200876 TTAATATAT-AGATTTTATTCATCCAAAATATTAATTGTAT
1 TTAATATATGA-ATTTGATTCATACAAAATATTAATTGTAT
94200916 TTATATAGAG
Statistics
Matches: 550, Mismatches: 32, Indels: 13
0.92 0.05 0.02
Matches are distributed among these distances:
272 4 0.01
273 150 0.27
274 104 0.19
275 189 0.34
276 103 0.19
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (275 bp):
TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
AAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTACCAAATTTAT
TAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTCTT
TTGGAAAGAATATAA
Found at i:94200816 original size:411 final size:413
Alignment explanation
Indices: 94200052--94200915 Score: 1407
Period size: 411 Copynumber: 2.1 Consensus size: 413
94200042 ATAGATAAAG
* *
94200052 TTAATATATGAATTTGATTTATACAAAATATTAATTGTATATATTTTATCGAAATTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCCAAATTATTAATATA
* *
94200117 AAAAATTATATTAATTAATTTCGGTCAAAAATAAAAGACATGGAAATTAATATTCTTTTGGAAAG
66 AAAAATTATATTAATTAATTTCAGTCAAAAATAAAAGACATGGAAATTAATATTCTTTTAGAAAG
*
94200182 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTAT
131 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
* * *
94200247 TAATATAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAAAAATGGAAATTAATATTCTT
196 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAAAATGAAAATTAATATTCTT
*
94200312 TTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACC
261 TTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
94200377 AAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTA
326 AAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTA
*
94200442 ATATTCTTTTGGAAAGAATATAA
391 ATATTCTTTTGGAAAGAAAATAA
*
94200465 TTAATATATGAATTTGATTCATACGAAATATTAATTGTATAT-TTTTA-CCAAATTTATTAATAT
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCCAAA-TTATTAATAT
* *
94200528 AAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTAGAA
65 AAAAAATTATATTAATTAATTTCAGTCAAAA-ATAAAAGACATGGAAATTAATATTCTTTTAGAA
* *
94200593 AGAATATAATTAATATATG-ATTT-TTTCATACAAAATATTAATTGTATATATTTTATCAAATTT
129 AGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTT
* *** *
94200656 ATTAATATAAACAGTTCTATTAATTAATTTCGGTCAAAATATAAGGGACATGAAAATTAATATTC
194 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAAAATGAAAATTAATATTC
94200721 TTTT-GAAAGGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTT
259 TTTTGGAAA-GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTT
** * *
94200785 ACTGAATTTATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGAAAA
323 ACCAAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAA
*
94200850 TTATTATTCTTTTGGAAAGAAAATAA
388 TTAATATTCTTTTGGAAAGAAAATAA
* *
94200876 TTAATATAT-AGATTTTATTCATCCAAAATATTAATTGTAT
1 TTAATATATGA-ATTTGATTCATACAAAATATTAATTGTAT
94200916 TTATATAGAG
Statistics
Matches: 419, Mismatches: 28, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
410 5 0.01
411 276 0.66
412 47 0.11
413 91 0.22
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (413 bp):
TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCCAAATTATTAATATA
AAAAATTATATTAATTAATTTCAGTCAAAAATAAAAGACATGGAAATTAATATTCTTTTAGAAAG
AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAAAATGAAAATTAATATTCTT
TTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
AAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTA
ATATTCTTTTGGAAAGAAAATAA
Found at i:94204490 original size:20 final size:21
Alignment explanation
Indices: 94204436--94204475 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
94204426 TATAATCTAA
* *
94204436 ATATTTAAAAATTAATAAAAT
1 ATATGTAAATATTAATAAAAT
94204457 ATATGTAAAT-TTAATAAAA
1 ATATGTAAATATTAATAAAA
94204476 ATTATTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
ATATGTAAATATTAATAAAAT
Found at i:94206609 original size:18 final size:18
Alignment explanation
Indices: 94206586--94206630 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
94206576 AATATTATTC
*
94206586 TCAAAAGTATTTTTAAAA
1 TCAAAAGCATTTTTAAAA
*
94206604 TCAAAAGCATTTTTAAAG
1 TCAAAAGCATTTTTAAAA
*
94206622 TCAGAAGCA
1 TCAAAAGCA
94206631 ATACTAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (18 bp):
TCAAAAGCATTTTTAAAA
Found at i:94207098 original size:34 final size:34
Alignment explanation
Indices: 94207059--94207125 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
94207049 TTTATAATAT
*
94207059 AATGTCTAAAATAGACATTTTATTTATTAAAAGC
1 AATGTCTAAAATAGACACTTTATTTATTAAAAGC
94207093 AATGTCTAAAATAGACACTTTATTTATTAAAAG
1 AATGTCTAAAATAGACACTTTATTTATTAAAAG
94207126 TATTTTTTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (34 bp):
AATGTCTAAAATAGACACTTTATTTATTAAAAGC
Found at i:94207186 original size:13 final size:13
Alignment explanation
Indices: 94207170--94207228 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
94207160 TAAACTAAAA
94207170 TTTTCAAAAGT-AC
1 TTTTCAAAA-TCAC
94207183 TTTTCAAAATCAC
1 TTTTCAAAATCAC
*
94207196 TTTTCCACAA-CAC
1 TTTT-CAAAATCAC
* *
94207209 TTTTTAAAAGCAC
1 TTTTCAAAATCAC
*
94207222 TTCTCAA
1 TTTTCAA
94207229 TAGCAATTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
12 4 0.11
13 30 0.79
14 4 0.11
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (13 bp):
TTTTCAAAATCAC
Found at i:94209424 original size:19 final size:19
Alignment explanation
Indices: 94209402--94209440 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
94209392 TATACTTTTT
94209402 AAATA-ATTTTAATTATTAA
1 AAATATATTTTAATT-TTAA
*
94209421 AAATATTTTTTAATTTTAA
1 AAATATATTTTAATTTTAA
94209440 A
1 A
94209441 TTTTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATATTTTAATTTTAA
Found at i:94210998 original size:20 final size:20
Alignment explanation
Indices: 94210973--94211013 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
94210963 AGTATCTCGC
*
94210973 TCTATAATACATGCGTCTAG
1 TCTATAATACATGCATCTAG
94210993 TCTATAATACATGCATCTAG
1 TCTATAATACATGCATCTAG
94211013 T
1 T
94211014 GCACTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCTATAATACATGCATCTAG
Found at i:94214143 original size:63 final size:63
Alignment explanation
Indices: 94214070--94214195 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
94214060 GTGACAGCGA
94214070 CTCATTATATATTGACCAGAACACATTCAACATAATTTATTCACCAATGCTTGTAAATTGATG
1 CTCATTATATATTGACCAGAACACATTCAACATAATTTATTCACCAATGCTTGTAAATTGATG
*
94214133 CTCATTATATATTGACCAGAACACATTCAACATAATTTATTCACCAGTGCTTGTAAATTGATG
1 CTCATTATATATTGACCAGAACACATTCAACATAATTTATTCACCAATGCTTGTAAATTGATG
94214196 TCAAATTAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (63 bp):
CTCATTATATATTGACCAGAACACATTCAACATAATTTATTCACCAATGCTTGTAAATTGATG
Found at i:94214286 original size:27 final size:28
Alignment explanation
Indices: 94214256--94214311 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
94214246 TAGAACGTTG
94214256 AAGTTAAT-AAAATAAATATAAGATTTA
1 AAGTTAATAAAAATAAATATAAGATTTA
94214283 AAGTTAATAAAAATAAATATAAGATTTA
1 AAGTTAATAAAAATAAATATAAGATTTA
94214311 A
1 A
94214312 CTATCTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (28 bp):
AAGTTAATAAAAATAAATATAAGATTTA
Found at i:94224519 original size:34 final size:34
Alignment explanation
Indices: 94224462--94224527 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
94224452 GTCTCAGTTA
* * * *
94224462 AGGCCTTAGCTCATTTCAGTAACAGTAGCAGTCT
1 AGGCCTAAGCCCATCTCAATAACAGTAGCAGTCT
*
94224496 AGGCCTAAGCCCATCTCAATAACAGTATCAGT
1 AGGCCTAAGCCCATCTCAATAACAGTAGCAGT
94224528 ATGCAAACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (34 bp):
AGGCCTAAGCCCATCTCAATAACAGTAGCAGTCT
Found at i:94227671 original size:30 final size:30
Alignment explanation
Indices: 94227637--94227724 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
94227627 TTTTCGATCA
94227637 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
*
94227667 TAGGGATAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
* * * *
94227697 TTGGGGTAAAGTGGTGATTTTACCAAAG
1 TAGGGGTAAAATGGTCATTTTGCCAAAG
94227725 ATGTAAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (30 bp):
TAGGGGTAAAATGGTCATTTTGCCAAAGTC
Found at i:94228206 original size:46 final size:47
Alignment explanation
Indices: 94228097--94228230 Score: 130
Period size: 47 Copynumber: 2.8 Consensus size: 47
94228087 CGGCCACATT
* * * *
94228097 ATGAGAGCTAGTGTAAGACAATGTCTAGGACATGGCATTGGCATTGAG
1 ATGAGTGCTAGTGTAAGAC-ATGTCTAGGACATGACATCGGCATCGAG
* *
94228145 ATGAGTGCTAGTGTAAGACATGTCTAGGACAT-ATATCGGCCTCGAG
1 ATGAGTGCTAGTGTAAGACATGTCTAGGACATGACATCGGCATCGAG
* * *
94228191 ATGA-TAG-TCAGTGTAAAACCATGTCTGGGACATGGCATCG
1 ATGAGT-GCT-AGTGTAAGA-CATGTCTAGGACATGACATCG
94228231 ACTTGAGACA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.03
46 22 0.31
47 26 0.36
48 22 0.31
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGAGTGCTAGTGTAAGACATGTCTAGGACATGACATCGGCATCGAG
Found at i:94228270 original size:46 final size:47
Alignment explanation
Indices: 94228199--94228370 Score: 179
Period size: 47 Copynumber: 3.7 Consensus size: 47
94228189 AGATGATAGT
*
94228199 CAGTGTAAAACCATGTCTGGGACATGGCATCGACTTGAGACATAAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATAAGC
** * * **
94228246 CAGTGTAAGA-CATGAGTGGGACAT-GCATCGACTACGAGATGAT-ATT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGA-CATAAGC
* * * **
94228292 TAGTGTAAAACCATGTCTAGGACATGGCATCGACTTGAGATGTAAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATAAGC
* *
94228339 CAGTGTAAGACCGTGTTTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
94228371 GCACCTTACC
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 9 0.09
46 26 0.27
47 54 0.55
48 9 0.09
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATAAGC
Found at i:94233017 original size:93 final size:93
Alignment explanation
Indices: 94232905--94233075 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
94232895 GCCCATAAGT
* *
94232905 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94232970 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94232998 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94233063 CGAGTTCGGATGC
66 CGAGTTCGGATGC
94233076 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94233091 original size:46 final size:46
Alignment explanation
Indices: 94232897--94233077 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
94232887 TGTAACCCGC
* * *
94232897 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94232943 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94232993 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
94233036 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
94233078 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94235493 original size:29 final size:29
Alignment explanation
Indices: 94235454--94235541 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
94235444 CAAAGATAAC
*
94235454 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
94235483 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
94235512 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
94235542 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:94235512 original size:15 final size:15
Alignment explanation
Indices: 94235454--94235532 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
94235444 CAAAGATAAC
*
94235454 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
94235468 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
94235483 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
94235497 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
94235512 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
94235527 AAGAAA
1 AAGAAA
94235533 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:94235541 original size:15 final size:15
Alignment explanation
Indices: 94235465--94235541 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
94235455 AGAAAACCGA
94235465 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
94235480 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
94235494 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
94235508 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
94235524 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
94235539 ATA
1 ATA
94235542 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94238600 original size:93 final size:93
Alignment explanation
Indices: 94238488--94238659 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
94238478 GCCCATAAGT
* *
94238488 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94238553 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
94238581 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94238646 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94238660 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94238655 original size:46 final size:46
Alignment explanation
Indices: 94238480--94238655 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
94238470 TGTAACCCGC
* * *
94238480 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
94238526 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
94238576 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
94238619 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94238656 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:94244307 original size:47 final size:46
Alignment explanation
Indices: 94244241--94244454 Score: 148
Period size: 47 Copynumber: 4.6 Consensus size: 46
94244231 CGAGTGCTAG
* * * * *
94244241 TGTAAGA-TATGTCTAGGACATGCGTCGGCCTCGAGATG-ATAGTCAA
1 TGTAAGACCATGTCTGGGACATGCATC-GACTCGAGATGTA-AGCCAA
* * * * *
94244287 TGTAAGACCATGTTTGGGACATGGCATCGACTTGATACGTAAGCCAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGTAAGCCAA
* * ** * *
94244334 TGTAAGA-CATATCTGGGATATGCATCGGTTACTAGATG-ATAGTCAA
1 TGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGTA-AGCCAA
* * *
94244380 TGTAAGACCATGTCTGGGACATGACATCGACTTGAGATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATG-CATCGACTCGAGATGTAAGCCAA
* *
94244427 TGTAAGACCGTGTTTGGGACATTGCATC
1 TGTAAGACCATGTCTGGGACA-TGCATC
94244455 AGCACCTTAC
Statistics
Matches: 127, Mismatches: 32, Indels: 17
0.72 0.18 0.10
Matches are distributed among these distances:
45 8 0.06
46 32 0.25
47 74 0.58
48 13 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGTAAGCCAA
Found at i:94249508 original size:57 final size:56
Alignment explanation
Indices: 94249397--94249509 Score: 129
Period size: 57 Copynumber: 2.0 Consensus size: 56
94249387 GACTAGCATT
** *
94249397 AAAGAAAAAAAAAAATTGTTCATCCATTCTAAACACTTTGGCCGAATGTCCTAAGG
1 AAAGAAAAAAAAAAATTGTTCATCCATTCTAAACACTTTGGCCGAAAATACTAAGG
* * * * *
94249453 AAAGAAAAGAAAAAATTTGTTCATCCTTTCTCATC-TTCTTGGCCGAAAATACTAAGG
1 AAAGAAAA-AAAAAAATTGTTCATCCATTCTAAACACT-TTGGCCGAAAATACTAAGG
94249510 GAAAAGGGGG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
56 9 0.19
57 38 0.81
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (56 bp):
AAAGAAAAAAAAAAATTGTTCATCCATTCTAAACACTTTGGCCGAAAATACTAAGG
Found at i:94250764 original size:40 final size:40
Alignment explanation
Indices: 94250705--94250846 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
94250695 AAATTGAATG
* * *
94250705 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
94250745 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
94250785 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
94250825 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
94250847 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:94250847 original size:40 final size:39
Alignment explanation
Indices: 94250744--94250872 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
94250734 TGCTGGAAAT
* * *
94250744 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
94250784 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
94250824 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
94250864 TATATCCGG
1 TATATCCGG
94250873 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:94254831 original size:40 final size:40
Alignment explanation
Indices: 94254786--94254951 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
94254776 CGGAATATAA
*
94254786 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
94254826 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
94254866 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
94254906 CCGGATATAATTTCCAGCA-TATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
94254944 CCGGATAT
1 CCGGATAT
94254952 CATTCAATTT
Statistics
Matches: 103, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
38 13 0.13
39 12 0.12
40 78 0.76
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:94255984 original size:17 final size:17
Alignment explanation
Indices: 94255962--94255997 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
94255952 TTTGCCAAAT
94255962 ACCATTTCCATGGCATA
1 ACCATTTCCATGGCATA
94255979 ACCATTTCCATGGCATA
1 ACCATTTCCATGGCATA
94255996 AC
1 AC
94255998 AAAGATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.28
Consensus pattern (17 bp):
ACCATTTCCATGGCATA
Found at i:94262018 original size:40 final size:40
Alignment explanation
Indices: 94261952--94262118 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
94261942 AAATTGAATG
* * *
94261952 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
94261991 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
94262031 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
94262071 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
94262111 ATATCCGG
1 ATATCCGG
94262119 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:94264598 original size:27 final size:27
Alignment explanation
Indices: 94264504--94264630 Score: 121
Period size: 27 Copynumber: 4.7 Consensus size: 27
94264494 CATCACGTAG
* * *
94264504 GGGCAAAATAGTCATCTTATCACCTAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
94264531 GGGTAAATTAGTCATTTTACCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
** *
94264558 GGGCAAAACCGTCATTTTACCACATGA
1 GGGCAAAATAGTCATTTTACCACATAA
* ****
94264585 GGGCAAAATAGTCAGTTTGTTGCATAA
1 GGGCAAAATAGTCATTTTACCACATAA
94264612 GGG-ACAAATAGTCATTTTA
1 GGGCA-AAATAGTCATTTTA
94264631 TTTTACAGGG
Statistics
Matches: 79, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCACATAA
Found at i:94264700 original size:27 final size:27
Alignment explanation
Indices: 94264623--94264700 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
94264613 GGACAAATAG
** * *
94264623 TCATTTTATTTTACAGGGGTATTACAA
1 TCATTTTATCCTACTGGGGTATTTCAA
* * *
94264650 TCATTTTATCCTACTAGGGAATTTCAT
1 TCATTTTATCCTACTGGGGTATTTCAA
94264677 TCATTTTATCCTA-TGGGGGTATTT
1 TCATTTTATCCTACT-GGGGTATTT
94264701 TGGTCATTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.02
27 40 0.98
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.46
Consensus pattern (27 bp):
TCATTTTATCCTACTGGGGTATTTCAA
Found at i:94270810 original size:18 final size:18
Alignment explanation
Indices: 94270787--94270823 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
94270777 CTTGGCCAAT
94270787 TATAATAACAGTAAACAG
1 TATAATAACAGTAAACAG
94270805 TATAATAACAGTAAACAG
1 TATAATAACAGTAAACAG
94270823 T
1 T
94270824 GCAGTAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (18 bp):
TATAATAACAGTAAACAG
Found at i:94271229 original size:27 final size:27
Alignment explanation
Indices: 94271197--94271274 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
94271187 TCTTAACATC
* *
94271197 TAAGGGTAAATTAGTCATTTTACCACA
1 TAAGGGAAAAATAGTCATTTTACCACA
* * * * *
94271224 TGAGGGCAAAATAGTCAATTTATCGCA
1 TAAGGGAAAAATAGTCATTTTACCACA
*
94271251 TAAGGGAAAAACAGTCATTTTACC
1 TAAGGGAAAAATAGTCATTTTACC
94271275 TTATAGGGGT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (27 bp):
TAAGGGAAAAATAGTCATTTTACCACA
Found at i:94274633 original size:39 final size:40
Alignment explanation
Indices: 94274581--94274659 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
94274571 TAGCCCATTC
*
94274581 CAGTAACAGTATCAG-TGGGGCCTAAGCCCATATCAATAA
1 CAGTAACAATATCAGTTGGGGCCTAAGCCCATATCAATAA
* * * * *
94274620 CAGTGACAATATCAGTTTGGGCTTTAGCCCATCTCAATAA
1 CAGTAACAATATCAGTTGGGGCCTAAGCCCATATCAATAA
94274660 AGAAGTAGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
39 13 0.39
40 20 0.61
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (40 bp):
CAGTAACAATATCAGTTGGGGCCTAAGCCCATATCAATAA
Found at i:94274720 original size:18 final size:18
Alignment explanation
Indices: 94274697--94274741 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
94274687 CCCATTACCG
*
94274697 TAACAGTAAACAGTACAA
1 TAACAGTAAACAGCACAA
*
94274715 TAACAGTAAACAGCACAG
1 TAACAGTAAACAGCACAA
*
94274733 TAGCAGTAA
1 TAACAGTAA
94274742 CAATATGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.18, G:0.16, T:0.16
Consensus pattern (18 bp):
TAACAGTAAACAGCACAA
Found at i:94275116 original size:27 final size:27
Alignment explanation
Indices: 94275078--94275205 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
94275068 CATCACGTAG
* *
94275078 GGGCAAAATAGTCATCTTACCACTTAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
94275105 GGGCAAATTAGTCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCACATAA
** *
94275132 GGGC-AAATCCCTCATTTTACCACATGA
1 GGGCAAAAT-AGTCATTTTACCACATAA
* * *
94275159 GGGAAAAATAGTCAGTTTATCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
94275186 GGGC-AAATAGTCATTTTACC
1 GGGCAAAATAGTCATTTTACC
94275206 TCACAGGGGT
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
26 17 0.21
27 60 0.74
28 4 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCACATAA
Found at i:94275242 original size:27 final size:27
Alignment explanation
Indices: 94275212--94275283 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
94275202 TACCTCACAG
* * *
94275212 GGGTATTACAGTCATTTTATCCTATTA
1 GGGTATTTCAGTCATTTTACCCTATGA
* *
94275239 GGGTATTTCAGTCAATTTACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGA
*
94275266 GGGTATTTTAGTCATTTT
1 GGGTATTTCAGTCATTTT
94275284 CAAGTAAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.44
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTATGA
Found at i:94281608 original size:15 final size:16
Alignment explanation
Indices: 94281588--94281617 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94281578 TTTATTTATG
94281588 ACAATCAT-ACATTTC
1 ACAATCATAACATTTC
94281603 ACAATCATAACATTT
1 ACAATCATAACATTT
94281618 AATTTAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.33
Consensus pattern (16 bp):
ACAATCATAACATTTC
Found at i:94285955 original size:80 final size:80
Alignment explanation
Indices: 94285871--94286019 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
94285861 TATGGTAACC
* * * *
94285871 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
94285935 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
94285951 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
94286016 CCGG
66 CCGG
94286020 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:94285961 original size:40 final size:38
Alignment explanation
Indices: 94285912--94286019 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
94285902 ATCACGATTT
*
94285912 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
94285952 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
94285992 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
94286020 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:94294072 original size:80 final size:80
Alignment explanation
Indices: 94293988--94294136 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
94293978 TATGGTAACC
* * * *
94293988 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
94294052 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
94294068 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
94294133 CCGG
66 CCGG
94294137 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:94294078 original size:40 final size:38
Alignment explanation
Indices: 94294029--94294136 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
94294019 ATCACGATTT
*
94294029 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
94294069 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
94294109 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
94294137 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:94299527 original size:13 final size:13
Alignment explanation
Indices: 94299509--94299535 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
94299499 TGAATTAAAA
94299509 TGTGTGAAAATTT
1 TGTGTGAAAATTT
94299522 TGTGTGAAAATTT
1 TGTGTGAAAATTT
94299535 T
1 T
94299536 ATCGTTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:94300702 original size:42 final size:43
Alignment explanation
Indices: 94300655--94300761 Score: 144
Period size: 42 Copynumber: 2.5 Consensus size: 43
94300645 GATGTGTTTC
* * *
94300655 CATGTAAGACCATGTTTGGGACATTGGCATCG-TATATGATTT
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGATATATGATTA
* *
94300697 CATGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGATATATGATTA
* *
94300740 CATGTAAGACCACGTCTTGGAC
1 CATGTAAGACCATGTCTGGGAC
94300762 GTTAGCATTG
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATCGATATATGATTA
Found at i:94307536 original size:13 final size:13
Alignment explanation
Indices: 94307518--94307542 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94307508 AAATTAAAAT
94307518 GTGTGAAAATTTC
1 GTGTGAAAATTTC
94307531 GTGTGAAAATTT
1 GTGTGAAAATTT
94307543 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:94308707 original size:42 final size:43
Alignment explanation
Indices: 94308658--94308772 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
94308648 GATGTGTTTT
*
94308658 CATGTAAGACCATGTCTGGGACA-TCGGCATCG-TATATT-ATTT
1 CATGTAAGACCATGTCTGGGACAGT-GGCATCGATAT-TTGATTA
** *
94308700 TTTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTA
*
94308743 CATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 CATGTAAGACCATGTCTGGGACAG-TGGCAT
94308773 TGTACTAGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.49
43 31 0.51
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTA
Found at i:94308763 original size:43 final size:42
Alignment explanation
Indices: 94308658--94308772 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 42
94308648 GATGTGTTTT
* *
94308658 CATGTAAGACCATGTCTGGGACA-TCGGCATCGTATATTATTT
1 CATGTAAGACCACGTCTGGGACAGT-GGCATCGTATATTATTA
**
94308700 TTTGTAAGACC-CTGTCTGGGACAGTGGCATCG-ATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGACAGTGGCATCGTATA-TT-ATTA
94308743 CATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 CATGTAAGACCACGTCTGGGACAG-TGGCAT
94308773 TGTACTAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
41 3 0.05
42 29 0.48
43 28 0.46
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACAGTGGCATCGTATATTATTA
Found at i:94311249 original size:13 final size:13
Alignment explanation
Indices: 94311228--94311263 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
94311218 GTGCAGACTT
*
94311228 CACATGCCCTAGG
1 CACACGCCCTAGG
94311241 CACACGCCCTAGG
1 CACACGCCCTAGG
94311254 CACACGCCCT
1 CACACGCCCT
94311264 TGTCCCTAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.22, C:0.47, G:0.19, T:0.11
Consensus pattern (13 bp):
CACACGCCCTAGG
Found at i:94312649 original size:28 final size:27
Alignment explanation
Indices: 94312616--94312668 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94312606 TTAGAATACT
*
94312616 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
94312644 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
94312669 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:94312655 original size:27 final size:27
Alignment explanation
Indices: 94312625--94312723 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
94312615 TTTAGTTTAC
94312625 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
94312652 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
94312679 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
94312706 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
94312724 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:94312707 original size:54 final size:54
Alignment explanation
Indices: 94312620--94312742 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 54
94312610 AATACTTTAG
* * *
94312620 TTTACTAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAA-TACCCTCGA
1 TTTA-TAAAATTACCGAAATACGCTTAGCTTGTAAAAATAC-CAAAGTACCCCCGA
* * * *
94312675 TTTGTAAAATTACTGAAATAC-CTTCGACTTGTAAAATTACCAAAGTACCCCCGA
1 TTTATAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACCAAAGTACCCCCGA
*
94312729 TTTACAAAATTACC
1 TTTATAAAATTACC
94312743 ATTTTACCCC
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.12
54 46 0.82
55 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACGCTTAGCTTGTAAAAATACCAAAGTACCCCCGA
Found at i:94312737 original size:27 final size:27
Alignment explanation
Indices: 94312707--94312770 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
94312697 TTCGACTTGT
94312707 AAAATTACCAAAGTACCCCCGATTTAC
1 AAAATTACCAAAGTACCCCCGATTTAC
***
94312734 AAAATTACCATTTTACCCCCGATTTAC
1 AAAATTACCAAAGTACCCCCGATTTAC
*
94312761 ATAATTACCA
1 AAAATTACCA
94312771 TTTTAACCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.39, C:0.28, G:0.05, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCCCGATTTAC
Found at i:94312794 original size:81 final size:81
Alignment explanation
Indices: 94312727--94312930 Score: 311
Period size: 81 Copynumber: 2.5 Consensus size: 81
94312717 AAGTACCCCC
* * * *
94312727 GATTTACAAAATTACCATTTTACCCCCGATTTACATAATTACCATTTTAACCCT-GATTTATATA
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTT-ACCCTCGATTTATAGA
94312791 ATTACCGTTTTACCCTT
65 ATTACCGTTTTACCCTT
* *
94312808 GATTTACAGAATTACCATTTTACCCTCGACTTGCAAAATTACCATTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAA
*
94312873 TTACTGTTTTACCCTT
66 TTACCGTTTTACCCTT
**
94312889 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC
94312931 TAAAATACCC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
80 5 0.05
81 106 0.95
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (81 bp):
GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAA
TTACCGTTTTACCCTT
Found at i:94312931 original size:27 final size:27
Alignment explanation
Indices: 94312720--94312930 Score: 244
Period size: 27 Copynumber: 7.8 Consensus size: 27
94312710 ATTACCAAAG
*
94312720 TACCCCCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
94312747 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
94312774 TAACCCT-GATTTATATAATTACCGTTT
1 T-ACCCTCGATTTACAAAATTACCATTT
* *
94312801 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
94312828 TACCCTCGACTTGCAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * **
94312855 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * **
94312882 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
94312909 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
94312931 TAAAATACCC
Statistics
Matches: 161, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.03
27 152 0.94
28 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:94312956 original size:54 final size:54
Alignment explanation
Indices: 94312663--94313048 Score: 209
Period size: 54 Copynumber: 7.1 Consensus size: 54
94312653 AAAAATACTG
* * * *** * * *
94312663 AAATACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
* ** * * * * *
94312717 AAGTACCCCCGATTTACAAAATTACCATTTTACCCCCGATTTACATAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
*** ** * * * *
94312771 TTTTAACCC-TGATTTATATAATTACCGTTTTACCCTTGATTTACAGAATTACCA
1 AAAT-ACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
*** * * * * **
94312825 TTTTACCCTCGACTTGCAAAATTACCATTTTACCCTCGATTTATAGAATTACTG
1 AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
*** * * * * *
94312879 TTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
* * **** * * *
94312933 AAATACCCTTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCC
1 AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGA-TTTATAAAATTACCA
* * *** * *
94312987 AAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
94313041 AAATACCC
1 AAATACCC
94313049 CTAATTTACA
Statistics
Matches: 264, Mismatches: 64, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
53 6 0.02
54 252 0.95
55 6 0.02
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (54 bp):
AAATACCCTTGATTTGCAAAATTACCGTTTTACCCTCGATTTATAAAATTACCA
Found at i:94312956 original size:81 final size:81
Alignment explanation
Indices: 94312727--94312958 Score: 295
Period size: 81 Copynumber: 2.9 Consensus size: 81
94312717 AAGTACCCCC
* * * *
94312727 GATTTACAAAATTACCATTTTACCCCCGATTTACATAATTACCATTTTAACCC-TGATTTATATA
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTT-ACCCTTGATTTATAAA
94312791 ATTACCGTTTTACCCTT
65 ATTACCGTTTTACCCTT
* * * *
94312808 GATTTACAGAATTACCATTTTACCCTCGACTTGCAAAATTACCATTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTATAAAA
*
94312873 TTACTGTTTTACCCTT
66 TTACCGTTTTACCCTT
** * *** * *
94312889 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAA
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTATAAAA
94312954 TTACC
66 TTACC
94312959 AAAATACCCC
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 4 0.03
81 125 0.97
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
GATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTATAAAA
TTACCGTTTTACCCTT
Found at i:94312967 original size:81 final size:81
Alignment explanation
Indices: 94312666--94312967 Score: 248
Period size: 81 Copynumber: 3.7 Consensus size: 81
94312656 AATACTGAAA
** ** * * * **
94312666 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCCCGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTT-GATTTATAAAATTACCAAATTACCCTTGAT
*
94312730 TTACAAAATTACCATTT
65 TTACAGAATTACCATTT
* * *** * ***
94312747 TACCCCCGATTTACATAATTACCATTTTAACCC-TGATTTATATAATTACCGTTTTACCCTTGAT
1 TACCCTCGATTTACAAAATTACCAAAAT-ACCCTTGATTTATAAAATTACCAAATTACCCTTGAT
94312811 TTACAGAATTACCATTT
65 TTACAGAATTACCATTT
* * *** * * ****
94312828 TACCCTCGACTTGCAAAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAATTACCCTTGATT
**
94312893 TACAGAATTACTGTTT
66 TACAGAATTACCATTT
* * * *
94312909 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAATTACCC
94312968 CTAGTTTGTA
Statistics
Matches: 175, Mismatches: 43, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
80 4 0.02
81 167 0.95
82 2 0.01
83 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAATTACCCTTGATT
TACAGAATTACCATTT
Found at i:94313055 original size:27 final size:27
Alignment explanation
Indices: 94312923--94313051 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
94312913 CTCGATTTAC
* * *
94312923 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
94312950 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * *
94312977 AAAATTACCCAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
94313004 AAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
94313031 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
94313052 ATTTACAAAG
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
26 3 0.03
27 82 0.92
28 4 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:94313071 original size:54 final size:54
Alignment explanation
Indices: 94312909--94313076 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
94312899 ATTACTGTTT
* ** * * ** **
94312909 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAA
* * * ** ** *
94312963 TACCC-CTAGTTTGTAAAATTACCCAAATACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
*
94313017 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
94313071 TACCCT
1 TACCCT
94313077 TGACTTTCTA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 2 0.02
54 92 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
Found at i:94313127 original size:28 final size:28
Alignment explanation
Indices: 94313086--94313139 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
94313076 TTGACTTTCT
94313086 AAAAATTATGGAAATACCATTGGTTTAC
1 AAAAATTATGGAAATACCATTGGTTTAC
*
94313114 AAAAATTACT-GAAATACCTTTGGTTT
1 AAAAATTA-TGGAAATACCATTGGTTT
94313140 GTAGATTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (28 bp):
AAAAATTATGGAAATACCATTGGTTTAC
Found at i:94313223 original size:27 final size:27
Alignment explanation
Indices: 94313193--94313283 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
94313183 ACCCCTATTA
*
94313193 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
94313220 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
94313247 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
94313274 GGTAAAATGA
1 GGTAAAATGA
94313284 TGAATATGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:94314467 original size:25 final size:24
Alignment explanation
Indices: 94314434--94314481 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
94314424 TTATAACATG
* * *
94314434 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
94314458 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
94314482 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:94314543 original size:20 final size:20
Alignment explanation
Indices: 94314518--94314568 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
94314508 ATTTTGATAA
94314518 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
94314538 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
94314558 ACATGAGATGT
1 ACATGATATGT
94314569 TCATAAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:94314693 original size:24 final size:24
Alignment explanation
Indices: 94314613--94314826 Score: 278
Period size: 24 Copynumber: 9.0 Consensus size: 24
94314603 GGAGGAAGTG
*
94314613 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
94314637 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
94314660 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
94314683 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
94314707 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
94314731 -TAAAGGGCTTATGCCCTAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
94314754 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
94314777 CAAAAAGGGCTTTTGCCCCAGTTA-
1 C-AAAAGGGCTTATGCCCCAGTTAT
*
94314801 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
94314827 ATGATAAAGC
Statistics
Matches: 171, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
23 65 0.38
24 96 0.56
25 10 0.06
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:94314728 original size:71 final size:71
Alignment explanation
Indices: 94314613--94314805 Score: 309
Period size: 71 Copynumber: 2.7 Consensus size: 71
94314603 GGAGGAAGTG
* *
94314613 CAAAAGGGCTTATGCCCCAATTAT-TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
*
94314677 AGTTAT
66 AGTGAT
*
94314683 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
94314748 AGTGAT
66 AGTGAT
* *
94314754 CAAAAGGGCTTATGCCCCAGTTA-CAAAAAGGGCTTTTGCCCCAGTTACTAAA
1 CAAAAGGGCTTATGCCCCAGTTATC-AAAAGGGCTTATGCCCCAGTTATTAAA
94314806 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
70 24 0.21
71 91 0.79
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
AGTGAT
Found at i:94315074 original size:31 final size:31
Alignment explanation
Indices: 94315018--94315083 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
94315008 ACCGTTTATA
* *
94315018 GAAAAGGCTTCGGCATAGTAATATGAAATTT
1 GAAAAGGCTTCGGCACAGTAATATGAAATAT
* **
94315049 GAAAAGGCTTCGGCCCAGTGTTATGAAATAT
1 GAAAAGGCTTCGGCACAGTAATATGAAATAT
94315080 GAAA
1 GAAA
94315084 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (31 bp):
GAAAAGGCTTCGGCACAGTAATATGAAATAT
Found at i:94326898 original size:13 final size:13
Alignment explanation
Indices: 94326880--94326905 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94326870 TATTTGTAAA
94326880 CTTGTTCATTTCC
1 CTTGTTCATTTCC
94326893 CTTGTTCATTTCC
1 CTTGTTCATTTCC
94326906 TTTCTCTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.08, T:0.54
Consensus pattern (13 bp):
CTTGTTCATTTCC
Found at i:94334229 original size:28 final size:26
Alignment explanation
Indices: 94334197--94334563 Score: 159
Period size: 27 Copynumber: 13.5 Consensus size: 26
94334187 ATACTTTAGT
* * *
94334197 TTACCAAAGTACCCCCCAATTTATAAAA
1 TTACCAAA-TA-CCCTCGATTTGTAAAA
*
94334225 TTACCCAAATATCCTCGATTTGTAAAA
1 TTA-CCAAATACCCTCGATTTGTAAAA
* *
94334252 TTACTAAAATACCCCCTGATTTGTAAAA
1 TTAC-CAAATACCCTC-GATTTGTAAAA
* *
94334280 TTACTGAAATACCCTCGACTTGTAAAA
1 TTAC-CAAATACCCTCGATTTGTAAAA
* *
94334307 TTACCAAAGTACCCTCGATTTATAGAA
1 TTACCAAA-TACCCTCGATTTGTAAAA
* ** * * ** *
94334334 TTACTATTTTACTCTTGATTTACAGAA
1 TTACCA-AATACCCTCGATTTGTAAAA
**** **
94334361 TTACTGTTTTACCCTCGATTTACAAAA
1 TTAC-CAAATACCCTCGATTTGTAAAA
*** *
94334388 TTACCGTTTTACCCTCGA-TTGTGAAA
1 TTACC-AAATACCCTCGATTTGTAAAA
* * ** *
94334414 TTACTGAAATACCC-CTATAGGGTAGAA
1 TTAC-CAAATACCCTCGAT-TTGTAAAA
*
94334441 TTACCAAAATACCC-CTAGTTTGTAAAA
1 TTACC-AAATACCCTCGA-TTTGTAAAA
* *
94334468 TTACCAAAATACCACTAG-TTTGTGAAA
1 TTACC-AAATACC-CTCGATTTGTAAAA
*
94334495 TTACCGAAATACCCTCAATTTGTAAAA
1 TTACC-AAATACCCTCGATTTGTAAAA
* *
94334522 TTACAAAAATACCC-CTGATTTATAAAA
1 TTAC-CAAATACCCTC-GATTTGTAAAA
*
94334549 TTACAGAAATACCCT
1 TTAC-CAAATACCCT
94334564 TGACTTTCTA
Statistics
Matches: 268, Mismatches: 53, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
25 2 0.01
26 21 0.08
27 208 0.78
28 32 0.12
29 5 0.02
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (26 bp):
TTACCAAATACCCTCGATTTGTAAAA
Found at i:94334524 original size:81 final size:81
Alignment explanation
Indices: 94334406--94334561 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 81
94334396 TTACCCTCGA
* * * * *
94334406 TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCT-AGTTTGTAAAATT
1 TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACAAAAATACCCCTGA-TTTATAAAATT
94334470 ACCA-AAATACCACTAGT
65 A-CAGAAATACCACTAGT
**
94334487 TTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACAAAAATACCCCTGATTTATAAAATT
1 TTGTGAAATTACCGAAATACCC-CAATAGGGTAAAATTACAAAAATACCCCTGATTTATAAAATT
94334551 ACAGAAATACC
65 ACAGAAATACC
94334562 CTTGACTTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 2 0.03
81 59 0.91
82 4 0.06
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (81 bp):
TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACAAAAATACCCCTGATTTATAAAATTA
CAGAAATACCACTAGT
Found at i:94334550 original size:54 final size:54
Alignment explanation
Indices: 94334215--94334628 Score: 243
Period size: 54 Copynumber: 7.6 Consensus size: 54
94334205 GTACCCCCCA
* *
94334215 ATTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACTAAAATACCCCCTG
1 ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATA-CCCCTG
* * * * *
94334270 ATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTA-CCCTCG
1 ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCCT-G
* * ** * * ** * ****
94334324 ATTTATAGAATTA-CTATTTTACTCTTGATTTACAGAATTACTGTTTTA-CCCTCG
1 ATTTATAAAATTACCGA-AATACCCTCGATTTGTAAAATTACTAAAATACCCCT-G
* *** * *
94334378 ATTTACAAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTGAAATACCCCT-
1 ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTG
*** * * * * *
94334430 ATAGGGTAGAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACT-
1 AT-TTATAAAATTACCGAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCCTG
* * * *
94334484 AGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACAAAAATACCCCTG
1 A-TTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTG
* * * * *
94334539 ATTTATAAAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATA-CCATT
1 ATTTATAAAATTACCGAAATACCCTCGA-TTTGT-AAAATTACTA-AAATACCCCTG
* * * *
94334594 AGTTTACAAAATTACTGAAATACCCTTGGTTTGTA
1 A-TTTATAAAATTACCGAAATACCCTCGATTTGTA
94334629 GATTTACCAA
Statistics
Matches: 273, Mismatches: 72, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
52 4 0.01
53 30 0.11
54 144 0.53
55 59 0.22
56 36 0.13
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (54 bp):
ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTG
Found at i:94334625 original size:27 final size:27
Alignment explanation
Indices: 94334518--94334625 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
94334508 CTCAATTTGT
* * * *
94334518 AAAATTACAAAAATACCCCTGATTTAT
1 AAAATTACAGAAATACCCTTGGTTTAC
*
94334545 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTTG-GTTTAC
* * *
94334572 TAAAAATTATAGAAATACCATTAGTTTAC
1 --AAAATTACAGAAATACCCTTGGTTTAC
*
94334601 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACAGAAATACCCTTGGTTT
94334626 GTAGATTTAC
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
27 40 0.62
28 6 0.09
29 19 0.29
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGGTTTAC
Found at i:94335385 original size:25 final size:25
Alignment explanation
Indices: 94335356--94335403 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
94335346 TTATAATGTG
94335356 AAAATGACAGTTTTGCCCCTAGGTA
1 AAAATGACAGTTTTGCCCCTAGGTA
*
94335381 AAAATGACTGTTTTGCCCCTAGG
1 AAAATGACAGTTTTGCCCCTAGG
94335404 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAATGACAGTTTTGCCCCTAGGTA
Found at i:94335448 original size:14 final size:15
Alignment explanation
Indices: 94335431--94335464 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
94335421 ATACGTGGGG
94335431 TATGATAT-ACATGA
1 TATGATATCACATGA
94335445 TATGATATGCACATGA
1 TATGATAT-CACATGA
94335461 TATG
1 TATG
94335465 CATGATATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
16 10 0.56
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (15 bp):
TATGATATCACATGA
Found at i:94335462 original size:11 final size:11
Alignment explanation
Indices: 94335446--94335481 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
94335436 TATACATGAT
94335446 ATGATATGCAC
1 ATGATATGCAC
94335457 ATGATATG--C
1 ATGATATGCAC
94335466 ATGATATGCAC
1 ATGATATGCAC
94335477 ATGAT
1 ATGAT
94335482 GTGTATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.39
11 14 0.61
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:94335502 original size:20 final size:20
Alignment explanation
Indices: 94335445--94335502 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
94335435 ATATACATGA
*
94335445 TATGATATGCACATGATATG
1 TATGATATGCACATGATGTG
*
94335465 CATGATATGCACATGATGTG
1 TATGATATGCACATGATGTG
*
94335485 TATGAAATGCACATGATG
1 TATGATATGCACATGATG
94335503 AATTCATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
TATGATATGCACATGATGTG
Found at i:94335650 original size:25 final size:26
Alignment explanation
Indices: 94335551--94335673 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
94335541 GAGGAAGTGC
*
94335551 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
94335577 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
94335603 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
94335629 AAAAGGGCTT-TGCCCCAATTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
94335654 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
94335674 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 32 0.36
26 58 0.64
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:94335879 original size:42 final size:42
Alignment explanation
Indices: 94335820--94335909 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
94335810 GTCTCCCCAG
*
94335820 ATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTGAA
1 ATGGGCTTGCATACATTCATTGATATTTCATGTGATATTGAA
*
94335862 ATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTGAA
1 ATGGGCTTGCATACATTCATTGATATTTCATGTGATATTGAA
94335904 ATGGGC
1 ATGGGC
94335910 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (42 bp):
ATGGGCTTGCATACATTCATTGATATTTCATGTGATATTGAA
Found at i:94338308 original size:41 final size:41
Alignment explanation
Indices: 94338231--94338308 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
94338221 TTTTTTTTAC
* * * *
94338231 GGCGTTTTCACTAAAAACGCTATTATAGCTTTATTTTTTGT
1 GGCGTTTTCACTAAAAACGCCACTATAGATTAATTTTTTGT
*
94338272 GGCGTTTT-ACTTAAAAACGCCACTATTGATTAATTTT
1 GGCGTTTTCAC-TAAAAACGCCACTATAGATTAATTTT
94338309 AATTTTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 2 0.06
41 29 0.94
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (41 bp):
GGCGTTTTCACTAAAAACGCCACTATAGATTAATTTTTTGT
Found at i:94338458 original size:8 final size:7
Alignment explanation
Indices: 94338450--94338544 Score: 104
Period size: 7 Copynumber: 13.0 Consensus size: 7
94338440 TTAAATATTA
94338450 AATTTTT
1 AATTTTT
94338457 AATTTTTT
1 AA-TTTTT
*
94338465 TATTTTT
1 AATTTTT
94338472 AATTTTT
1 AATTTTT
94338479 AATTTTTTT
1 AA--TTTTT
94338488 AA-TTTT
1 AATTTTT
94338494 AATTTTT
1 AATTTTT
*
94338501 TATTTTT
1 AATTTTT
94338508 AAATTTTT
1 -AATTTTT
94338516 AAATTTTT
1 -AATTTTT
94338524 -ATTTTT
1 AATTTTT
94338530 AATTTTTT
1 AA-TTTTT
94338538 AATTTTT
1 AATTTTT
94338545 GAGTTTATTT
Statistics
Matches: 77, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
6 12 0.16
7 31 0.40
8 27 0.35
9 7 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
AATTTTT
Found at i:94338458 original size:15 final size:15
Alignment explanation
Indices: 94338440--94338544 Score: 88
Period size: 15 Copynumber: 7.1 Consensus size: 15
94338430 GATTAAAATA
*
94338440 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
* **
94338455 TTAATTTTTTTATTT
1 TTAAATTTTAAATTT
* *
94338470 TTAATTTTTAATTTT
1 TTAAATTTTAAATTT
*
94338485 TTTAATTTT-AATTT
1 TTAAATTTTAAATTT
* *
94338499 TTTATTTTTAAATTT
1 TTAAATTTTAAATTT
*
94338514 TTAAATTTT-TATTT
1 TTAAATTTTAAATTT
* *
94338528 TTAATTTTTTAATTT
1 TTAAATTTTAAATTT
94338543 TT
1 TT
94338545 GAGTTTATTT
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
14 24 0.33
15 48 0.67
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:94338478 original size:22 final size:22
Alignment explanation
Indices: 94338450--94338544 Score: 115
Period size: 22 Copynumber: 4.3 Consensus size: 22
94338440 TTAAATATTA
*
94338450 AATTTTTAATTTTTTTATTTTT
1 AATTTTTAATTTTTTAATTTTT
94338472 AATTTTTAATTTTTTTAA-TTTT
1 AATTTTTAA-TTTTTTAATTTTT
* *
94338494 AATTTTTTATTTTTAAATTTTT
1 AATTTTTAATTTTTTAATTTTT
94338516 AAATTTTT-A-TTTTTAATTTTTT
1 -AATTTTTAATTTTTTAA-TTTTT
94338538 AATTTTT
1 AATTTTT
94338545 GAGTTTATTT
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
21 20 0.31
22 31 0.48
23 14 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (22 bp):
AATTTTTAATTTTTTAATTTTT
Found at i:94338483 original size:29 final size:29
Alignment explanation
Indices: 94338450--94338544 Score: 106
Period size: 29 Copynumber: 3.2 Consensus size: 29
94338440 TTAAATATTA
94338450 AATTTTTAATTTTTTTATTTTTAATTTTT
1 AATTTTTAATTTTTTTATTTTTAATTTTT
* *
94338479 AATTTTT--TTAATTTTAATTTTTTATTTTT
1 AATTTTTAATT--TTTTTATTTTTAATTTTT
*
94338508 AAATTTTTAA-ATTTTTATTTTTAATTTTTT
1 -AATTTTTAATTTTTTTATTTTTAA-TTTTT
94338538 AATTTTT
1 AATTTTT
94338545 GAGTTTATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
27 2 0.04
29 41 0.75
30 12 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (29 bp):
AATTTTTAATTTTTTTATTTTTAATTTTT
Found at i:94338557 original size:29 final size:29
Alignment explanation
Indices: 94338450--94338557 Score: 96
Period size: 29 Copynumber: 3.7 Consensus size: 29
94338440 TTAAATATTA
* *
94338450 AATTTTTAATTTTTTTATTTTTAA-TTTTT
1 AATTTTTAAATTTATT-TTTTTAATTTTTT
* * *
94338479 AATTTTTTTAATTTTAATTTTTT-ATTTTTA
1 AA--TTTTTAAATTTATTTTTTTAATTTTTT
94338509 AATTTTTAAATTT-TTATTTTTAATTTTTT
1 AATTTTTAAATTTATT-TTTTTAATTTTTT
* *
94338538 AATTTTTGAGTTTATTTTTT
1 AATTTTTAAATTTATTTTTT
94338558 ATTTCGGTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
27 1 0.02
28 15 0.23
29 24 0.37
30 13 0.20
31 12 0.18
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (29 bp):
AATTTTTAAATTTATTTTTTTAATTTTTT
Found at i:94338558 original size:7 final size:7
Alignment explanation
Indices: 94338460--94338561 Score: 73
Period size: 7 Copynumber: 14.4 Consensus size: 7
94338450 AATTTTTAAT
94338460 TTTTTTA
1 TTTTTTA
*
94338467 TTTTTAA
1 TTTTTTA
*
94338474 TTTTTAA
1 TTTTTTA
94338481 TTTTTTTA
1 -TTTTTTA
* *
94338489 ATTTTAA
1 TTTTTTA
94338496 TTTTTTA
1 TTTTTTA
*
94338503 TTTTTAAA
1 TTTTT-TA
*
94338511 TTTTTAA
1 TTTTTTA
*
94338518 ATTTTTA
1 TTTTTTA
*
94338525 TTTTTAA
1 TTTTTTA
94338532 TTTTTTAA
1 TTTTTT-A
*
94338540 TTTTTGA
1 TTTTTTA
*
94338547 --GTTTA
1 TTTTTTA
94338552 TTTTTTA
1 TTTTTTA
94338559 TTT
1 TTT
94338562 CGGTTTAATG
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
5 3 0.04
7 53 0.72
8 18 0.24
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:94338640 original size:23 final size:23
Alignment explanation
Indices: 94338613--94338660 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
94338603 TTTAAATGTA
94338613 TAGTTGAAACTTTAATTTTGATT
1 TAGTTGAAACTTTAATTTTGATT
94338636 TAGTTGAAACTTTAATTTTGATT
1 TAGTTGAAACTTTAATTTTGATT
94338659 TA
1 TA
94338661 ATTATACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.52
Consensus pattern (23 bp):
TAGTTGAAACTTTAATTTTGATT
Found at i:94339111 original size:15 final size:15
Alignment explanation
Indices: 94339088--94339138 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
94339078 ATACCCATGG
*
94339088 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
94339103 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
94339118 CTAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
94339132 CCTTAAA
1 CCATAAA
94339139 TATTAAACCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:94339312 original size:37 final size:37
Alignment explanation
Indices: 94339262--94339334 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
94339252 TGTGATGTTT
94339262 TTTTGGGGTTTAGGGTTTTAGAAGTTATAGTTTAGTA
1 TTTTGGGGTTTAGGGTTTTAGAAGTTATAGTTTAGTA
* *
94339299 TTTTGGGGTTTAGGTTTTTAGAGGTTATAGTTTAGT
1 TTTTGGGGTTTAGGGTTTTAGAAGTTATAGTTTAGT
94339335 GTTCATGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (37 bp):
TTTTGGGGTTTAGGGTTTTAGAAGTTATAGTTTAGTA
Found at i:94339433 original size:41 final size:41
Alignment explanation
Indices: 94339375--94339680 Score: 434
Period size: 41 Copynumber: 7.5 Consensus size: 41
94339365 AGGAGTAATA
*
94339375 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
*
94339416 AGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
1 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
*
94339457 TGACTTTTAGCGGTGTTTTACCGAAAGCGCCGCTAATGCTC
1 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
* * *
94339498 CGACTTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGTTC
1 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
* * *
94339539 CGACTTTTAGCGGCGTTTTAACGAAAGCGCCGCTAATGCTT
1 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
*
94339580 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
** ** ** *
94339621 TGTTTTTTAGCGGCGTTTTAACAAAAAATGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTT-ACCGAAAGCGCCGCTAATGCTC
*
94339663 TG-TTTTTAGCGGCGTTTT
1 TGACTTTTAGCGGCGTTTT
94339681 TGATTAAACG
Statistics
Matches: 242, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 222 0.92
42 20 0.08
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (41 bp):
TGACTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTC
Found at i:94347524 original size:27 final size:27
Alignment explanation
Indices: 94347483--94347680 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
94347473 TACTGAAATG
* * *
94347483 CCCTCGATTTGTAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
94347510 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
94347537 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
94347564 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
94347591 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
94347618 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
94347645 CCCATAG-TTTAAAAAATTACCGTTTTA
1 CCC-TCGATTTATAGAATTACCGTTTTA
94347672 CCCTCGATT
1 CCCTCGATT
94347681 GTGAAATTAC
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 147 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:94347621 original size:81 final size:81
Alignment explanation
Indices: 94347483--94347680 Score: 290
Period size: 81 Copynumber: 2.4 Consensus size: 81
94347473 TACTGAAATG
* * *
94347483 CCCTCGATTTGTAGAATTATCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTA
* *
94347548 TAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
*
94347564 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTA
94347629 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * *
94347645 CCCATAG-TTTAAAAAATTACCGTTTTACCCTCGATT
1 CCC-TCGATTTATAGAATTACCATTTTACCCTCGATT
94347681 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 104 0.98
82 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:94347733 original size:14 final size:14
Alignment explanation
Indices: 94347714--94347752 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
94347704 TAGGATAGAG
94347714 TTACCAAAATAAAA
1 TTACCAAAATAAAA
94347728 TTACCAAAATAAAA
1 TTACCAAAATAAAA
94347742 TTACCAAAATA
1 TTACCAAAATA
94347753 CCCCTAGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (14 bp):
TTACCAAAATAAAA
Found at i:94347774 original size:27 final size:27
Alignment explanation
Indices: 94347737--94347890 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
94347727 ATTACCAAAA
94347737 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
94347764 TAAAATTACCAAAATAACCCTAGTTCG
1 TAAAATTACCAAAATACCCCTAGTTTG
* * ** * *
94347791 TGAAATTACCGAAATACCATTGGGTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
94347818 TGAAATTA-CAGAAATA-CCCTCAATTTG
1 TAAAATTACCA-AAATACCCCT-AGTTTG
94347845 TAAAATTACCAAAATACCCCT-GATTTG
1 TAAAATTACCAAAATACCCCTAG-TTTG
*
94347872 CAAAATTA-CAGAAATACCC
1 TAAAATTACCA-AAATACCC
94347891 TTGACTTTCT
Statistics
Matches: 102, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
26 5 0.05
27 91 0.89
28 6 0.06
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:94347878 original size:54 final size:53
Alignment explanation
Indices: 94347737--94347891 Score: 170
Period size: 54 Copynumber: 2.9 Consensus size: 53
94347727 ATTACCAAAA
*
94347737 TAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA-AAATAACCCTAGTTCG
1 TAAAATTACCAAAATACCCCTGA-TTTGTAAAATTA-CAGAAAT-ACCCTAATTCG
* * ** ** * *
94347791 TGAAATTACCGAAATACCATTGGGTTGTGAAATTACAGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCCTGATTTGTAAAATTACAGAAATACCCT-AATTCG
*
94347845 TAAAATTACCAAAATACCCCTGATTTGCAAAATTACAGAAATACCCT
1 TAAAATTACCAAAATACCCCTGATTTGTAAAATTACAGAAATACCCT
94347892 TGACTTTCTA
Statistics
Matches: 81, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCCTGATTTGTAAAATTACAGAAATACCCTAATTCG
Found at i:94347878 original size:81 final size:81
Alignment explanation
Indices: 94347739--94347889 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
94347729 TACCAAAATA
* ** *
94347739 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATAACCCTAGTTCGTGAAATTACCGAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATAACCCTAGTTCGCAAAATTACAGAA
94347804 ATACCATTGGGTTGTG
66 ATACCATTGGGTTGTG
* *
94347820 AAATTA-CAGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTGCAAAATTACA
1 AAATTACCA-AAATACCCCT-AATTTGTAAAATTACCAAAATAACCCTAG-TTCGCAAAATTACA
94347882 GAAATACC
63 GAAATACC
94347890 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 7 0.11
81 54 0.89
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.27
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATAACCCTAGTTCGCAAAATTACAGAA
ATACCATTGGGTTGTG
Found at i:94347932 original size:56 final size:56
Alignment explanation
Indices: 94347793--94347949 Score: 160
Period size: 56 Copynumber: 2.9 Consensus size: 56
94347783 CTAGTTCGTG
* ** * *
94347793 AAATTACC-GAAATACCATTGGGTTGTGAAATTACAGAAATACCC-TCAATTTGTA
1 AAATTACCAGAAATACCATTGGTTTGCAAAATTACAGAAATACCCTTGAATTTCTA
** * *
94347847 AAATTACCA-AAATACCCCTGATTTGCAAAATTACAGAAATACCCTTGACTTTCTAA
1 AAATTACCAGAAATACCATTGGTTTGCAAAATTACAGAAATACCCTTGAATTTCT-A
* * * *
94347903 AAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAACACCCTTG
1 AAATTACCAGAAATACCATTGGTTTGCAAAATTACAGAAATACCCTTG
94347950 GTTTGTAGAT
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
54 37 0.45
55 7 0.08
56 39 0.47
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (56 bp):
AAATTACCAGAAATACCATTGGTTTGCAAAATTACAGAAATACCCTTGAATTTCTA
Found at i:94347941 original size:27 final size:27
Alignment explanation
Indices: 94347902--94347953 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94347892 TGACTTTCTA
*
94347902 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAACACCATTGGTTTAC
*
94347929 AAAATTACT-GAAACACCCTTGGTTT
1 AAAATTA-TAGAAACACCATTGGTTT
94347954 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (27 bp):
AAAATTATAGAAACACCATTGGTTTAC
Found at i:94348037 original size:27 final size:27
Alignment explanation
Indices: 94347994--94348067 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
94347984 AAATGACTAA
*
94347994 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
94348021 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
94348048 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
94348068 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:94348071 original size:27 final size:27
Alignment explanation
Indices: 94348007--94348071 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
94347997 ACCCCTAATA
*
94348007 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
94348034 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
94348061 GGTAAAATGAC
1 GGTAAAATGAC
94348072 GAATATGTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:94348804 original size:20 final size:20
Alignment explanation
Indices: 94348779--94348845 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
94348769 GATATGATAT
*
94348779 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
94348799 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
94348819 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
94348839 ACATGAT
1 ACATGAT
94348846 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:94348924 original size:26 final size:26
Alignment explanation
Indices: 94348895--94349030 Score: 136
Period size: 26 Copynumber: 5.3 Consensus size: 26
94348885 GAGGAAGTGC
94348895 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
94348921 AAAAGGTCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
94348947 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
94348973 AAGAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
94348998 AAAAAGGCTT-TGCCTCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
94349021 AAAAGAGGCT
1 AAAAG-GGCT
94349031 AGGCCTCCAG
Statistics
Matches: 88, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
23 4 0.05
24 7 0.08
25 26 0.30
26 51 0.58
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:94348971 original size:52 final size:52
Alignment explanation
Indices: 94348895--94349017 Score: 173
Period size: 52 Copynumber: 2.4 Consensus size: 52
94348885 GAGGAAGTGC
94348895 AAAAGGGCTTATGCCCCAGTTTATTGAA-AAGGTCTTATGCCCCAGTTTACC-A
1 AAAAGGGCTTATGCCCCAGTTTATTGAAGAAGGT-TT-TGCCCCAGTTTACCGA
* *
94348947 AAAAGGGCTTATGCCCTAGTTTATTGAAGAGGGTTTTGCCCCAGTTTACCGA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAGAAGGTTTTGCCCCAGTTTACCGA
*
94348999 AAAA-GGCTT-TGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTT
94349018 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
50 8 0.12
51 19 0.29
52 34 0.52
53 4 0.06
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAGAAGGTTTTGCCCCAGTTTACCGA
Found at i:94349224 original size:42 final size:42
Alignment explanation
Indices: 94349159--94349250 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
94349149 TAGTCTCCCC
* * ** *
94349159 AAATAGGCTTGCATAAATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATAAATCCATTGACATTACATATGATATTG
* *
94349201 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATAAATCCATTGACATTACATATGATATTG
94349243 AAATGGGC
1 AAATGGGC
94349251 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATAAATCCATTGACATTACATATGATATTG
Found at i:94349309 original size:31 final size:31
Alignment explanation
Indices: 94349274--94349352 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
94349264 CGTTTACAGT
*
94349274 AAAGGCTTTGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
94349305 AAAGGCTTCGGCCCAGTGATATGGTTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
94349336 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
94349353 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:94360520 original size:15 final size:16
Alignment explanation
Indices: 94360495--94360542 Score: 75
Period size: 15 Copynumber: 3.2 Consensus size: 16
94360485 TTAGTAGCCT
94360495 TAAATTAAATAAAATA
1 TAAATTAAATAAAATA
94360511 TAAA-TAAATAAAATA
1 TAAATTAAATAAAATA
94360526 -AAATTAAATAAAA-A
1 TAAATTAAATAAAATA
94360540 TAA
1 TAA
94360543 CTAAAACTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.13
15 22 0.73
16 4 0.13
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAATTAAATAAAATA
Found at i:94360524 original size:25 final size:25
Alignment explanation
Indices: 94360496--94360548 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
94360486 TAGTAGCCTT
* *
94360496 AAATTAAATAAAATATAAATAAATA
1 AAATAAAATAAAATAAAAATAAATA
* *
94360521 AAATAAAATTAAATAAAAATAACTA
1 AAATAAAATAAAATAAAAATAAATA
94360546 AAA
1 AAA
94360549 CTGAAATTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (25 bp):
AAATAAAATAAAATAAAAATAAATA
Found at i:94360533 original size:6 final size:5
Alignment explanation
Indices: 94360496--94360538 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
94360486 TAGTAGCCTT
* *
94360496 AAATT AAATA AAATA TAAAT- AAATA AAATA AAATT AAATA AAA
1 AAATA AAATA AAATA -AAATA AAATA AAATA AAATA AAATA AAA
94360539 ATAACTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 4 0.12
5 25 0.76
6 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
AAATA
Found at i:94360548 original size:10 final size:10
Alignment explanation
Indices: 94360500--94360548 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
94360490 AGCCTTAAAT
94360500 TAAATAAAATA
1 TAAATAAAA-A
*
94360511 TAAATAAATA
1 TAAATAAAAA
*
94360521 -AAATAAAAT
1 TAAATAAAAA
94360530 TAAATAAAAA
1 TAAATAAAAA
*
94360540 TAACTAAAA
1 TAAATAAAA
94360549 CTGAAATTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
9 7 0.22
10 17 0.53
11 8 0.25
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:94368737 original size:31 final size:31
Alignment explanation
Indices: 94368702--94368765 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
94368692 CTTTTTCATA
*
94368702 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
94368733 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
94368764 TT
1 TT
94368766 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:94368848 original size:42 final size:42
Alignment explanation
Indices: 94368789--94368922 Score: 207
Period size: 42 Copynumber: 3.2 Consensus size: 42
94368779 TGGCCCATAG
94368789 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
94368831 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
** * *
94368873 GCCCATTTCAATATCACATGA-AATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAT-ATAATGTCAATGAAAGAATGCAA
*
94368915 ACCCATTT
1 GCCCATTT
94368923 GGGGAGACTA
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
42 85 0.99
43 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
Found at i:94369094 original size:23 final size:23
Alignment explanation
Indices: 94369064--94369230 Score: 244
Period size: 23 Copynumber: 7.1 Consensus size: 23
94369054 CCTTGCCTCT
*
94369064 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* * *
94369087 TTTAATAAATGGGGCGTAAGCCTT
1 TTTAATAACTGGGGCATAAGCC-C
*
94369111 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
94369134 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
94369158 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
94369182 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
94369205 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
94369228 TTT
1 TTT
94369231 TGCACTTCCT
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 67 0.50
24 66 0.50
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:94369123 original size:24 final size:23
Alignment explanation
Indices: 94369062--94369231 Score: 223
Period size: 24 Copynumber: 7.2 Consensus size: 23
94369052 GGCCTTGCCT
*
94369062 CTTTTAATAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
* * *
94369085 CCTTTAATAAATGGGGCGTAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
94369108 CTTTTTGATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAG-C
*
94369133 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
*
94369157 CTTTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
94369180 CCTTTAATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
94369203 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
94369227 CTTTT
1 CTTTT
94369232 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
23 64 0.48
24 67 0.50
25 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:94369132 original size:47 final size:47
Alignment explanation
Indices: 94369058--94369230 Score: 249
Period size: 48 Copynumber: 3.7 Consensus size: 47
94369048 TGGAGGCCTT
* * *
94369058 GCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAAATGGGGCGTAA
1 GCCT-TTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAA
* *
94369106 GCCTTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 GCCTTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAA
* *
94369154 GCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAA
1 GCCTTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAA
*
94369201 GCC-CTTTAATAACTGGGGCATAAGCCCTTT
1 GCCTTTTTAATAACTGGGGCATAAGCCCTTT
94369231 TGCACTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 25 0.22
47 43 0.37
48 47 0.41
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
GCCTTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAA
Found at i:94369303 original size:9 final size:9
Alignment explanation
Indices: 94369289--94369345 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
94369279 ATCTCATGTG
94369289 CATATCATA
1 CATATCATA
*
94369298 CATATCATGTG
1 CATATCA--TA
94369309 CATATCATA
1 CATATCATA
* *
94369318 CATGTCATGTG
1 CATATCA--TA
94369329 CATATCATA
1 CATATCATA
94369338 CATATCAT
1 CATATCAT
94369346 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:94369305 original size:20 final size:20
Alignment explanation
Indices: 94369277--94369347 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
94369267 GCATTTATGA
*
94369277 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
94369297 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
94369317 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
94369337 ACATATCATGT
1 ACATATCATGT
94369348 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:94369312 original size:11 final size:11
Alignment explanation
Indices: 94369282--94369336 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
94369272 TATGAACATC
94369282 TCATGTGCATA
1 TCATGTGCATA
*
94369293 TCA--TACATA
1 TCATGTGCATA
94369302 TCATGTGCATA
1 TCATGTGCATA
* *
94369313 TCA--TACATG
1 TCATGTGCATA
94369322 TCATGTGCATA
1 TCATGTGCATA
94369333 TCAT
1 TCAT
94369337 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:94369412 original size:25 final size:25
Alignment explanation
Indices: 94369384--94369431 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
94369374 ATACATAAAC
* *
94369384 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
94369409 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
94369432 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:94372715 original size:31 final size:31
Alignment explanation
Indices: 94372674--94372737 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
94372664 CCTTTTCATA
*
94372674 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
94372705 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
94372736 TT
1 TT
94372738 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:94372820 original size:42 final size:42
Alignment explanation
Indices: 94372761--94372894 Score: 207
Period size: 42 Copynumber: 3.2 Consensus size: 42
94372751 TGGCCCATAG
94372761 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
94372803 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
** * *
94372845 GCCCATTTCAATATCACATGA-AATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACAT-ATAATGTCAATGAAAGAATGCAA
*
94372887 ACCCATTT
1 GCCCATTT
94372895 GGGGAGACTA
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
42 85 0.99
43 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAA
Done.