Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 308 of 410
Found at i:95432605 original size:39 final size:39
Alignment explanation
Indices: 95432495--95432629 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
95432485 GATCTCGAGT
* * * *
95432495 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
95432536 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
95432574 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
95432613 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
95432630 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:95432773 original size:18 final size:19
Alignment explanation
Indices: 95432752--95432792 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
95432742 AATAAAATGA
95432752 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
95432770 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
95432789 GAAA
1 GAAA
95432793 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:95438062 original size:7 final size:7
Alignment explanation
Indices: 95438052--95438129 Score: 70
Period size: 7 Copynumber: 11.3 Consensus size: 7
95438042 AACCCCAAAC
95438052 CCTTGAA
1 CCTTGAA
95438059 CCTTGAA
1 CCTTGAA
*
95438066 -CTTAAA
1 CCTTGAA
*
95438072 CCTTCAA
1 CCTTGAA
95438079 CCTTGAA
1 CCTTGAA
*
95438086 TCCTTAAA
1 -CCTTGAA
* *
95438094 CCCTCAA
1 CCTTGAA
95438101 -CTTGAA
1 CCTTGAA
*
95438107 CCTTGTA
1 CCTTGAA
95438114 CCTTGAA
1 CCTTGAA
*
95438121 CCTCGAA
1 CCTTGAA
95438128 CC
1 CC
95438130 CAAAATCCAA
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
6 9 0.16
7 42 0.74
8 6 0.11
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (7 bp):
CCTTGAA
Found at i:95438851 original size:10 final size:10
Alignment explanation
Indices: 95438836--95438860 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
95438826 AATGTAATAT
95438836 AATAAAATCA
1 AATAAAATCA
95438846 AATAAAATCA
1 AATAAAATCA
95438856 AATAA
1 AATAA
95438861 TAGTAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AATAAAATCA
Found at i:95441665 original size:23 final size:24
Alignment explanation
Indices: 95441605--95441666 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 24
95441595 TATTTTTAAA
95441605 TTTTCTTT-TTGTTTTCTTCCTCT
1 TTTTCTTTCTTGTTTTCTTCCTCT
* * *
95441628 TCTTCTTTCCT-TTTTCTTTCT-T
1 TTTTCTTTCTTGTTTTCTTCCTCT
*
95441650 TTTTTTTTCTTGTTTTC
1 TTTTCTTTCTTGTTTTC
95441667 CCCTTTCGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
22 9 0.29
23 21 0.68
24 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (24 bp):
TTTTCTTTCTTGTTTTCTTCCTCT
Found at i:95444220 original size:24 final size:24
Alignment explanation
Indices: 95444193--95444248 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
95444183 CGCCTAGAGA
*
95444193 TAGGGTGATAAGATTTTGCTGGAT
1 TAGGGTGATAAGATTTTGCCGGAT
*
95444217 TAGGGTGATAGGATTTTGCCGGAT
1 TAGGGTGATAAGATTTTGCCGGAT
95444241 TAGGGTGA
1 TAGGGTGA
95444249 AACCTAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.23, C:0.05, G:0.38, T:0.34
Consensus pattern (24 bp):
TAGGGTGATAAGATTTTGCCGGAT
Found at i:95460115 original size:38 final size:39
Alignment explanation
Indices: 95460073--95460166 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 39
95460063 CCAACTCCGT
* *
95460073 CCAACCCAACACACCA-TGTGGGGATAAAATCGACCCAC
1 CCAACCCAACACACCAGTATGGGGATAAAATCAACCCAC
* * * *
95460111 CCAACCCTACACACAAAGTATGGGGATAAAATCAACTCAT
1 CCAACCCAACACAC-CAGTATGGGGATAAAATCAACCCAC
95460151 CCAA-CCATACACACCA
1 CCAACCCA-ACACACCA
95460167 AATGGTACAG
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
38 13 0.29
39 4 0.09
40 28 0.62
ACGTcount: A:0.40, C:0.35, G:0.12, T:0.13
Consensus pattern (39 bp):
CCAACCCAACACACCAGTATGGGGATAAAATCAACCCAC
Found at i:95466307 original size:124 final size:124
Alignment explanation
Indices: 95466080--95466327 Score: 424
Period size: 124 Copynumber: 2.0 Consensus size: 124
95466070 TACCTCGACC
*
95466080 TCTAGTACCCTGTCCACGAGTACCACGTATGCTAATCATAACTAACGAACTAACCTGTGTTTAGA
1 TCTAGTACCCTGTCCACGAGTACCACGTATGCTAATCATAACTAACGAACTAACCTGTATTTAGA
* *
95466145 AGTTTTATGCACATTAGTTTACAGTTTCGTTAATTATTAGCAAATATTTTATGCAATTA
66 AGTTTTATGCACATTAGTTTACAGTTTCGATAAGTATTAGCAAATATTTTATGCAATTA
* * *
95466204 TCTAGTACCCTGTCCACGAGTACCACGTATGCTAATCGTAACTAACGAATTAATCTGTATTTAGA
1 TCTAGTACCCTGTCCACGAGTACCACGTATGCTAATCATAACTAACGAACTAACCTGTATTTAGA
* *
95466269 AGTTTTATGCAGATTAGTTTACAGTTTCGATAAGTATTAGCAGATATTTTATGCAATTA
66 AGTTTTATGCACATTAGTTTACAGTTTCGATAAGTATTAGCAAATATTTTATGCAATTA
95466328 GTAATAGAGT
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 116 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (124 bp):
TCTAGTACCCTGTCCACGAGTACCACGTATGCTAATCATAACTAACGAACTAACCTGTATTTAGA
AGTTTTATGCACATTAGTTTACAGTTTCGATAAGTATTAGCAAATATTTTATGCAATTA
Found at i:95466591 original size:12 final size:12
Alignment explanation
Indices: 95466574--95466599 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
95466564 AAATTATTTC
95466574 AATCATTTTACA
1 AATCATTTTACA
95466586 AATCATTTTACA
1 AATCATTTTACA
95466598 AA
1 AA
95466600 AACCAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AATCATTTTACA
Found at i:95471103 original size:91 final size:90
Alignment explanation
Indices: 95470946--95471143 Score: 247
Period size: 91 Copynumber: 2.2 Consensus size: 90
95470936 ATTAACAAAA
* * **
95470946 AAAAAAGCAATTAAGCTCTTCTTTTTTTTTTTTGCACTCAATTGAGTAGTCGAGGTTTCAAAATG
1 AAAAAAGCAATTAAGCTCTTC-TTTTTTTTTTTGCACTCAACTGAGTACTCGAACTTTCAAAATG
* *
95471011 CATAAAAAAAGACCCTCAAACTTTTTT
65 CAT-AAAAAAGACCCTCAAAATTTTTC
* * *
95471038 AGAAAAAGAAATTAAGCTCTTGC-TTTTTTTTTT-CACTCAACTGGGTACTTGAACTTTCAAAAT
1 A-AAAAAGCAATTAAGCTCTT-CTTTTTTTTTTTGCACTCAACTGAGTACTCGAACTTTCAAAAT
*
95471101 GCATAAAAAAGACCCTTAAAATTTTTC
64 GCATAAAAAAGACCCTCAAAATTTTTC
*
95471128 AAAACAGCAATTAAGC
1 AAAAAAGCAATTAAGC
95471144 GCCTACTCTT
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
89 13 0.14
90 21 0.23
91 28 0.30
92 11 0.12
93 18 0.20
94 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (90 bp):
AAAAAAGCAATTAAGCTCTTCTTTTTTTTTTTGCACTCAACTGAGTACTCGAACTTTCAAAATGC
ATAAAAAAGACCCTCAAAATTTTTC
Found at i:95471250 original size:27 final size:28
Alignment explanation
Indices: 95471198--95471250 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
95471188 AAATTTTAGA
* *
95471198 AAAAAATATTAAATTTTAATAGAAATAT
1 AAAAAATATTAAAATTTAATAAAAATAT
*
95471226 AAAAAAT-TTAAAATTTATTAAAAAT
1 AAAAAATATTAAAATTTAATAAAAAT
95471251 TAGAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (28 bp):
AAAAAATATTAAAATTTAATAAAAATAT
Found at i:95471283 original size:16 final size:16
Alignment explanation
Indices: 95471262--95471292 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95471252 AGAATTTTTT
95471262 ATAAAAATAGTAAAAA
1 ATAAAAATAGTAAAAA
*
95471278 ATAAAAATTGTAAAA
1 ATAAAAATAGTAAAA
95471293 TTTTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (16 bp):
ATAAAAATAGTAAAAA
Found at i:95477939 original size:18 final size:18
Alignment explanation
Indices: 95477878--95477940 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 18
95477868 ATTATAAATA
*
95477878 ATAAAAATCAATAAAATTT
1 ATAAAAAT-ATTAAAATTT
*
95477897 ATAAAAATTATTAAACTTT
1 ATAAAAA-TATTAAAATTT
95477916 GATAAAAA-ATTAAAATTT
1 -ATAAAAATATTAAAATTT
95477934 ACTAAAA
1 A-TAAAA
95477941 CTTAGAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.03
18 14 0.37
19 15 0.39
20 8 0.21
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (18 bp):
ATAAAAATATTAAAATTT
Found at i:95480233 original size:33 final size:35
Alignment explanation
Indices: 95480138--95480234 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
95480128 TTAATGTTTT
*
95480138 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
95480173 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
95480206 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
95480235 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:95482190 original size:7 final size:7
Alignment explanation
Indices: 95482161--95482204 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
95482151 TAGGTTCCAA
95482161 AAAATGG
1 AAAATGG
*
95482168 -AAAT-T
1 AAAATGG
95482173 AAAAT-G
1 AAAATGG
95482179 AAAATGG
1 AAAATGG
95482186 AAAATGG
1 AAAATGG
95482193 AAAATGG
1 AAAATGG
95482200 AAAAT
1 AAAAT
95482205 TGCAATCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 13 0.39
7 20 0.61
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.18
Consensus pattern (7 bp):
AAAATGG
Found at i:95482677 original size:17 final size:17
Alignment explanation
Indices: 95482655--95482692 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
95482645 TCCAATATCG
95482655 TCTCCCACGATTTACTT
1 TCTCCCACGATTTACTT
95482672 TCTCCCACGATTTACTT
1 TCTCCCACGATTTACTT
95482689 TCTC
1 TCTC
95482693 TGTTTCTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.16, C:0.37, G:0.05, T:0.42
Consensus pattern (17 bp):
TCTCCCACGATTTACTT
Found at i:95486341 original size:6 final size:6
Alignment explanation
Indices: 95486330--95486369 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
95486320 CTTTTTATAT
* * *
95486330 TTTTAA TTTTAA TTTTAA TTTTGA TTTTAT TTTTTA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
95486370 TATAATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (6 bp):
TTTTAA
Found at i:95486461 original size:14 final size:14
Alignment explanation
Indices: 95486415--95486458 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
95486405 TACTATGTTA
95486415 AATTATATTTTTAT
1 AATTATATTTTTAT
95486429 AATTAT-TTTTTAT
1 AATTATATTTTTAT
* *
95486442 -TTTTTATTTTTAT
1 AATTATATTTTTAT
95486455 AATT
1 AATT
95486459 TTAAATTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 3 0.12
13 14 0.56
14 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
AATTATATTTTTAT
Found at i:95486847 original size:27 final size:28
Alignment explanation
Indices: 95486817--95486873 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
95486807 TTGAGTTATT
95486817 AATTCATT-ATTTTAAAATTTAAATTTA
1 AATTCATTAATTTTAAAATTTAAATTTA
* * *
95486844 AATTCATTAATTTTTATATTTAATTTTA
1 AATTCATTAATTTTAAAATTTAAATTTA
95486872 AA
1 AA
95486874 GTTAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (28 bp):
AATTCATTAATTTTAAAATTTAAATTTA
Found at i:95486866 original size:35 final size:34
Alignment explanation
Indices: 95486814--95486879 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
95486804 TAATTGAGTT
*
95486814 ATTAATTCATTATTTTAAAATTTAAATTTAAATTC
1 ATTAATTCATTATTTT-AAATTTAAAGTTAAATTC
* *
95486849 ATTAATT-TTTATATTTAATTTTAAAGTTAAA
1 ATTAATTCATTAT-TTTAAATTTAAAGTTAAA
95486880 ATTTTCATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 17 0.63
35 10 0.37
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (34 bp):
ATTAATTCATTATTTTAAATTTAAAGTTAAATTC
Found at i:95505483 original size:12 final size:12
Alignment explanation
Indices: 95505466--95505490 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95505456 AGATAATCAC
95505466 TTTAATATTAAA
1 TTTAATATTAAA
95505478 TTTAATATTAAA
1 TTTAATATTAAA
95505490 T
1 T
95505491 CTATTAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:95506329 original size:45 final size:45
Alignment explanation
Indices: 95506239--95506330 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
95506229 AAAACTCCTT
* * *
95506239 ATTGTATATACTTTATGAAAGCAATTCATCCAACTGCTTTATCCA
1 ATTGTATACACTTTACGAAAGCAATTCATCCAACTACTTTATCCA
* * *
95506284 ATTGTATACACTTTGCGAAAGCAATTCATCCAACTATTTTGTCCA
1 ATTGTATACACTTTACGAAAGCAATTCATCCAACTACTTTATCCA
95506329 AT
1 AT
95506331 GACCTCGTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (45 bp):
ATTGTATACACTTTACGAAAGCAATTCATCCAACTACTTTATCCA
Found at i:95509777 original size:16 final size:16
Alignment explanation
Indices: 95509756--95509790 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
95509746 GGTTCCCTGG
*
95509756 AATGGAATAGGGCTGT
1 AATGGAATAGAGCTGT
95509772 AATGGAATAGAGCTGT
1 AATGGAATAGAGCTGT
95509788 AAT
1 AAT
95509791 CAATAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.31, T:0.26
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:95513306 original size:40 final size:40
Alignment explanation
Indices: 95513261--95513427 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
95513251 CGGAATATAA
95513261 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
95513301 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
95513341 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95513381 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
95513420 CCGGATAT
1 CCGGATAT
95513428 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95513411 original size:80 final size:79
Alignment explanation
Indices: 95513261--95513427 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
95513251 CGGAATATAA
* *
95513261 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
95513326 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
95513341 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
95513403 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
95513420 CCGGATAT
1 CCGGATAT
95513428 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:95514277 original size:17 final size:19
Alignment explanation
Indices: 95514254--95514299 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95514244 AAGAAGCATG
95514254 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95514272 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95514290 AATCATGCTC
1 AATCATGCTC
95514300 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95521366 original size:39 final size:40
Alignment explanation
Indices: 95521260--95521425 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
95521250 CGGAATATAA
*
95521260 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAATTGCCTTCGGGTCTTAGC
* * *
95521300 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
95521339 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
95521379 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
95521418 CCGGATAT
1 CCGGATAT
95521426 CATTCAATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 46 0.43
40 58 0.54
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:95521382 original size:79 final size:79
Alignment explanation
Indices: 95521260--95521425 Score: 212
Period size: 79 Copynumber: 2.1 Consensus size: 79
95521250 CGGAATATAA
* *
95521260 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAAT
95521323 TGCCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
* * ** *
95521339 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATT
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATT
*
95521403 GTCTTCGGGCTTAGC
65 GCCTTCGGGCTTAGC
95521418 CCGGATAT
1 CCGGATAT
95521426 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 4 0.05
79 72 0.95
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTG
CCTTCGGGCTTAGC
Found at i:95522272 original size:17 final size:19
Alignment explanation
Indices: 95522249--95522294 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95522239 AAGAAGCATG
95522249 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95522267 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95522285 AATCATGCTC
1 AATCATGCTC
95522295 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95530078 original size:40 final size:40
Alignment explanation
Indices: 95530033--95530199 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
95530023 CGGAATATAA
95530033 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
95530073 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
95530113 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95530153 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
95530192 CCGGATAT
1 CCGGATAT
95530200 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95530183 original size:80 final size:79
Alignment explanation
Indices: 95530033--95530199 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
95530023 CGGAATATAA
* *
95530033 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
95530098 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
95530113 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
95530175 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
95530192 CCGGATAT
1 CCGGATAT
95530200 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:95531048 original size:17 final size:19
Alignment explanation
Indices: 95531025--95531070 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95531015 AAGAAGCATG
95531025 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95531043 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95531061 AATCATGCTC
1 AATCATGCTC
95531071 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95556432 original size:30 final size:30
Alignment explanation
Indices: 95556398--95556457 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
95556388 GAATCTTGAG
* *
95556398 TTAGAGCGTTGAGAGCCTTGCTCTTTTCCA
1 TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
95556428 TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
1 TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
95556458 GAATATCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (30 bp):
TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
Found at i:95563066 original size:40 final size:40
Alignment explanation
Indices: 95562969--95563187 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
95562959 CGAATGGTGT
* * * *
95562969 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
95563010 TCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
95563050 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
95563090 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
95563130 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
95563170 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
95563188 ACAATCGAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
40 128 0.84
41 24 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:95563183 original size:120 final size:121
Alignment explanation
Indices: 95562969--95563187 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
95562959 CGAATGGTGT
* * * *
95562969 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATTCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
95563034 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACCAAAA
* * *
95563090 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
95563153 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
95563188 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.69
121 25 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACCAAAA
Found at i:95563208 original size:40 final size:40
Alignment explanation
Indices: 95563020--95563213 Score: 149
Period size: 40 Copynumber: 4.8 Consensus size: 40
95563010 TCGGGTCAAT
* * * * * * *
95563020 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* * * * * * * *
95563060 TCCCGAAGGCATTTGTACGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* *
95563100 TCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCT-ATG
* *
95563140 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* * * *
95563180 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
95563214 TTAAATTCCG
Statistics
Matches: 134, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 127 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (40 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
Found at i:95563222 original size:80 final size:80
Alignment explanation
Indices: 95563036--95563213 Score: 185
Period size: 80 Copynumber: 2.2 Consensus size: 80
95563026 AGGCATTTGT
* * * * * * * * *
95563036 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTACGAATCACCAAAACCGGGCTAAGT
* * *
95563101 CCCGAAGGCATTCGT
66 CCCGAAGACAATCGA
* * * * *
95563116 GCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGT
1 GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTACGAATCACCAAAACCGGGCTAAGT
95563181 CCCGAAGACAATCGA
66 CCCGAAGACAATCGA
* *
95563196 GCGAGTCGCTATATCCGG
1 GCGAGTCACTAAATCCGG
95563214 TTAAATTCCG
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (80 bp):
GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTACGAATCACCAAAACCGGGCTAAGT
CCCGAAGACAATCGA
Found at i:95565185 original size:18 final size:18
Alignment explanation
Indices: 95565164--95565198 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95565154 CTAAAATTTT
95565164 ATAAAAATTAAAAAATAA
1 ATAAAAATTAAAAAATAA
* *
95565182 ATAAAGATTATAAAATA
1 ATAAAAATTAAAAAATA
95565199 TTCTAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
ATAAAAATTAAAAAATAA
Found at i:95565238 original size:31 final size:31
Alignment explanation
Indices: 95565162--95565239 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
95565152 TTCTAAAATT
95565162 TTATAAAA-ATT-AAAA-A-ATAAATAAAGA
1 TTATAAAATATTAAAAATATATAAATAAAGA
**
95565189 TTATAAAATATTCTAAATATATAAATAAA-A
1 TTATAAAATATTAAAAATATATAAATAAAGA
95565219 TTATAAAATATTAAAAA-ATAT
1 TTATAAAATATTAAAAATATAT
95565240 TACTAATTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 8 0.18
28 3 0.07
29 7 0.16
30 17 0.39
31 9 0.20
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (31 bp):
TTATAAAATATTAAAAATATATAAATAAAGA
Found at i:95572279 original size:22 final size:22
Alignment explanation
Indices: 95572254--95572317 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
95572244 AGTTAATGAA
95572254 AATAAAATAACAATACTTGTTG
1 AATAAAATAACAATACTTGTTG
* *
95572276 AATAAAATAACAA-GC-TATT-
1 AATAAAATAACAATACTTGTTG
95572295 AATGAAAATAACAATACTTGTTG
1 AAT-AAAATAACAATACTTGTTG
95572318 CACGCCTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
19 3 0.09
20 13 0.38
21 2 0.06
22 16 0.47
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (22 bp):
AATAAAATAACAATACTTGTTG
Found at i:95572481 original size:26 final size:26
Alignment explanation
Indices: 95572445--95572497 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
95572435 ATGATGAATC
95572445 TAAATAATAAAGGAATATTGACATTT
1 TAAATAATAAAGGAATATTGACATTT
95572471 TAAATAATAAAGGAATATTGACATTT
1 TAAATAATAAAGGAATATTGACATTT
95572497 T
1 T
95572498 CTCTATGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (26 bp):
TAAATAATAAAGGAATATTGACATTT
Found at i:95584709 original size:80 final size:80
Alignment explanation
Indices: 95584625--95584773 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
95584615 TATGGTAACC
* * * *
95584625 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
95584689 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
95584705 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
95584770 CCGG
66 CCGG
95584774 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:95584715 original size:40 final size:38
Alignment explanation
Indices: 95584666--95584773 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
95584656 ATCACGATTT
*
95584666 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
95584706 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
95584746 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
95584774 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:95592833 original size:40 final size:38
Alignment explanation
Indices: 95592770--95592878 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 38
95592760 ATCACGATTT
*
95592770 GCACAAATGCCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATG-CCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
95592811 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
95592851 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
95592879 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 48 0.79
41 8 0.13
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:95601403 original size:20 final size:20
Alignment explanation
Indices: 95601374--95601418 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
95601364 AGCACATGTA
*
95601374 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
* *
95601394 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTTAGAACTT
95601414 TTCAT
1 TTCAT
95601419 TTTAGTCCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:95607390 original size:29 final size:29
Alignment explanation
Indices: 95607329--95607427 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
95607319 ACAGTAAGTC
*
95607329 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
95607357 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
95607386 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
95607414 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95607428 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:95615105 original size:29 final size:29
Alignment explanation
Indices: 95615044--95615142 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
95615034 ACAGTAAGTC
*
95615044 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
95615072 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
95615101 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
95615129 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95615143 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:95617836 original size:69 final size:67
Alignment explanation
Indices: 95617723--95617853 Score: 190
Period size: 69 Copynumber: 1.9 Consensus size: 67
95617713 CAGAAATAAT
* * *
95617723 ATATTAAATTTAATTTAATTTTAGCTTAATAGTATTTTATTAATTTAATATTAAAGTGATTATCT
1 ATATTAAATTTAATCTAATTTTAGCTTAATAATATTATATTAATTTAATATTAAAGTGATTATCT
95617788 TA
66 TA
* * *
95617790 ATATTAAATTTAATCTCATATTTATCTTGATAAATATTATATTAATTTAATATTAAAGTGATTA
1 ATATTAAATTTAATCTAAT-TTTAGCTTAAT-AATATTATATTAATTTAATATTAAAGTGATTA
95617854 AGTTTAACCA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 17 0.30
68 9 0.16
69 30 0.54
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.50
Consensus pattern (67 bp):
ATATTAAATTTAATCTAATTTTAGCTTAATAATATTATATTAATTTAATATTAAAGTGATTATCT
TA
Found at i:95618988 original size:43 final size:43
Alignment explanation
Indices: 95618917--95619009 Score: 168
Period size: 43 Copynumber: 2.2 Consensus size: 43
95618907 CAAATTTGAC
*
95618917 TCACCTCCCTTTAATGGGACCCTACCTGGTGCACAGTTCGCAT
1 TCACTTCCCTTTAATGGGACCCTACCTGGTGCACAGTTCGCAT
*
95618960 TCACTTCCCTTTAATGGGACCCTGCCTGGTGCACAGTTCGCAT
1 TCACTTCCCTTTAATGGGACCCTACCTGGTGCACAGTTCGCAT
95619003 TCACTTC
1 TCACTTC
95619010 TTCAGTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.17, C:0.34, G:0.18, T:0.30
Consensus pattern (43 bp):
TCACTTCCCTTTAATGGGACCCTACCTGGTGCACAGTTCGCAT
Found at i:95623787 original size:37 final size:36
Alignment explanation
Indices: 95623724--95623799 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
95623714 TATCCAGAAA
95623724 TAATATTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATATTATTTTAATAGTTTAATATT-AATTTAATAT
* *
95623760 TAATATTTTTCTTAATAGTATT-TTATTAATTTAATAT
1 TAATATTATT-TTAATAGT-TTAATATTAATTTAATAT
95623797 TAA
1 TAA
95623800 AGTGACTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 17 0.49
37 16 0.46
38 2 0.06
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (36 bp):
TAATATTATTTTAATAGTTTAATATTAATTTAATAT
Found at i:95639868 original size:18 final size:18
Alignment explanation
Indices: 95639845--95639880 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
95639835 TTGTTTAACT
95639845 CAATTCTAATTTTGTTAA
1 CAATTCTAATTTTGTTAA
95639863 CAATTCTAATTTTGTTAA
1 CAATTCTAATTTTGTTAA
95639881 AGTCATGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (18 bp):
CAATTCTAATTTTGTTAA
Found at i:95642262 original size:29 final size:30
Alignment explanation
Indices: 95642230--95642387 Score: 99
Period size: 30 Copynumber: 5.3 Consensus size: 30
95642220 ATCGAATACT
*
95642230 AAAAGGGATGGTGACGACCATC-AA-TAATG
1 AAAAGGGATGGTGACAACCATCGAACT-ATG
*
95642259 AAAAGGGATGGTGACAACCATCGAACTGTG
1 AAAAGGGATGGTGACAACCATCGAACTATG
* ** * *
95642289 AAAAGGGATGGCT-TCGGCTATCGATCTATG
1 AAAAGGGATGG-TGACAACCATCGAACTATG
* * * * * *
95642319 AAAAGGGATAGCT-TCGACTATCAAATTATG
1 AAAAGGGAT-GGTGACAACCATCGAACTATG
* * * *
95642349 AAAATGAATGGTGACAACCATCAAATTATG
1 AAAAGGGATGGTGACAACCATCGAACTATG
*
95642379 AAAAAGGAT
1 AAAAGGGAT
95642388 AGCTTCGGTT
Statistics
Matches: 103, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
29 23 0.22
30 77 0.75
31 3 0.03
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (30 bp):
AAAAGGGATGGTGACAACCATCGAACTATG
Found at i:95642293 original size:30 final size:29
Alignment explanation
Indices: 95642230--95642299 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
95642220 ATCGAATACT
*
95642230 AAAAGGGATGGTGACGACCATCAATAATG
1 AAAAGGGATGGTGACAACCATCAATAATG
*
95642259 AAAAGGGATGGTGACAACCATCGAACT-GTG
1 AAAAGGGATGGTGACAACCATC-AA-TAATG
95642289 AAAAGGGATGG
1 AAAAGGGATGG
95642300 CTTCGGCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 21 0.57
30 15 0.41
31 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.31, T:0.16
Consensus pattern (29 bp):
AAAAGGGATGGTGACAACCATCAATAATG
Found at i:95642312 original size:30 final size:30
Alignment explanation
Indices: 95642198--95642352 Score: 106
Period size: 30 Copynumber: 5.2 Consensus size: 30
95642188 TCATCGACGA
*
95642198 ATGAAAAGGGATAGCTTTGACTATCGAA-T
1 ATGAAAAGGGATAGCTTCGACTATCGAACT
* * *
95642227 ACT-AAAAGGGAT-GGTGACGACCATC-AA-T
1 A-TGAAAAGGGATAGCT-TCGACTATCGAACT
* * * *
95642255 AATGAAAAGGGAT-GGTGACAACCATCGAACT
1 -ATGAAAAGGGATAGCT-TCGACTATCGAACT
* * * *
95642286 GTGAAAAGGGATGGCTTCGGCTATCGATCT
1 ATGAAAAGGGATAGCTTCGACTATCGAACT
* *
95642316 ATGAAAAGGGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAACT
95642346 ATGAAAA
1 ATGAAAA
95642353 TGAATGGTGA
Statistics
Matches: 101, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
28 6 0.06
29 38 0.38
30 54 0.53
31 3 0.03
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCGAACT
Found at i:95642370 original size:90 final size:90
Alignment explanation
Indices: 95642256--95642444 Score: 225
Period size: 90 Copynumber: 2.1 Consensus size: 90
95642246 ACCATCAATA
* * * * * * *
95642256 ATGAAAAGGGATGGTGACAACCATCGAACTGTGAAAAGGGATGGCTTCGGCTATCGATCTATGAA
1 ATGAAAAGGAATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACAATGAA
* *
95642321 AAGGGATAGCTTCGACTATCAAATT
66 AAGAGATAGATTCGACTATCAAATT
* * * *
95642346 ATGAAAATGAATGGTGACAACCATCAAATTATGAAAAAGGATAGCTTCGGTTGTCGAACAATGAA
1 ATGAAAAGGAATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACAATGAA
* * *
95642411 AAGAGATATATTTGATTATCAAATT
66 AAGAGATAGATTCGACTATCAAATT
*
95642436 ACGAAAAGG
1 ATGAAAAGG
95642445 GATATGTCAA
Statistics
Matches: 81, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 81 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (90 bp):
ATGAAAAGGAATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACAATGAA
AAGAGATAGATTCGACTATCAAATT
Found at i:95648530 original size:930 final size:932
Alignment explanation
Indices: 95642585--95652753 Score: 19570
Period size: 932 Copynumber: 10.9 Consensus size: 932
95642575 AGTTTTTGGA
* *
95642585 TTAGTTATTCTTATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
*
95642650 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATATTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
* * * *
95642715 TAGTGGTCGGAAGCTTGTTCGAGTTGGAAAGTTGTCGGAGATCTATCACATTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
* *
95642780 TTCGGTATTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
*
95642845 CCATGTATTTTGGTTGTTGAAATGGCCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
95642910 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95642975 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95643040 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95643105 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95643170 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95643235 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95643300 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95643365 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
*
95643430 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGTCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95643495 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
*
95643517 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTACTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95643582 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
*
95643647 TAATGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
*
95643712 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTCGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
95643777 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
95643842 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATG-TTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95643906 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95643971 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95644036 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95644101 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95644166 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
*
95644231 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTACTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
* *
95644296 GTGTTTAGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTAAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
*
95644361 CTTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95644426 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
95644448 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95644513 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
95644578 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
95644643 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
*
95644708 CCATGAATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
95644773 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
*
95644838 AAGGATGGATGAAGGTATGAAAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95644903 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95644968 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95645033 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95645098 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95645163 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95645228 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
95645293 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95645358 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
95645380 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
*
95645445 GGCTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
95645510 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
*
95645575 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGTATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
*
95645640 CCATGTATTTTGGTTGTTGAAATGGCCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
*
95645705 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGCTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95645770 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95645835 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95645900 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95645965 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95646030 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
* *
95646095 GACTTTTGTTTTGAATCATTTTGGCATAAAATATCTGTGGTTTAAGAGGATATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
*
95646160 GTGTTTGGGAGGTCCCAATTTCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
95646225 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95646290 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
* * *
95646312 TTAGTTATTCTCATATTGGATTAGGTTTTCATGCTTTGTGGTTGTATATTGTTTTGGCACGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95646377 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
*
95646442 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTCGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
*
95646507 TTCAGTACTTACAGAGGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
* **
95646572 CCATGTATTTTAGTTGTTGAAATGACCATTAAGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
*
95646637 ATAGATATAGTTTTGGCATGTAAGTATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95646702 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95646767 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95646832 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95646897 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
*
95646962 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGAGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95647027 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
*
95647092 GTGTTTTGGGAGGTCCCAATTTCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAA
781 GTG-TTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAA
*
95647157 GCCTGACTTTTTGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCT
845 GCCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCT
95647222 GGTCTAGTGGTTAAGTGGCAAGG
910 GGTCTAGTGGTTAAGTGGCAAGG
95647245 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
* *
95647310 GACTGTATGTGTCACAAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTAAGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
**
95647375 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTCAGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
*
95647440 TTCAGTACTTACAGAGGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
95647505 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
* *
95647570 ATAGATATAGTTTTGGCATGTAAGTATTAGCTTTAGATTGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95647635 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95647700 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95647765 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGG-ATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95647829 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95647894 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95647959 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95648024 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
95648089 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95648154 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
*
95648176 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGAAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95648241 GACTGT-TGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
* *
95648305 TAGTGGTTAGAAGCTCGTTCGAGTCGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
95648370 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
95648435 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
*
95648500 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGCTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95648565 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95648630 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95648695 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95648760 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95648825 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTT-GAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95648889 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95648954 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
*
95649019 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACATAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95649084 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
95649106 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95649171 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
95649236 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
95649301 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
*
95649366 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTACCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
* *
95649431 ATAGATATAGTTTTGGCATGTAAATATTACCTTTAGAATGGTTAATGTTTCGCTTG-TATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
*
95649495 AAGGATGGATGAATGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95649560 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95649625 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95649690 TAGTT-AATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
*
95649754 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGATTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95649819 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95649884 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
95649949 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95650014 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
95650036 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95650101 GACTGTATGTGTCAC-AACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTA-GTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
** *
95650164 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTCAGAGATCTATCACACTATATTTCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
*
95650229 TTCAGTACTTACAGAGGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
95650294 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
*
95650359 ATAGATATAGTTTTGGCATGTAAGTATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95650424 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95650489 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
*
95650554 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGGATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95650619 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
95650684 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95650749 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95650814 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAG-TTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
95650878 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95650943 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
*
95650965 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGAAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95651030 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
* *
95651095 TAGTGGTTAGAAGCTCGTTCGAGTCGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
95651160 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
95651225 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
95651290 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95651355 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95651420 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
95651485 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95651550 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
586 TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
* *
95651615 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGAAAAAATCGG
651 CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
95651680 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
716 GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
95651745 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
781 GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
*
95651810 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGGCTGCTG
846 CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
95651875 GTCTAGTGGTTAAGTGGCAAGG
911 GTCTAGTGGTTAAGTGGCAAGG
95651897 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
1 TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
95651962 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
66 GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
*
95652027 TAGTGGTCAGAAGCTTGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
131 TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
*
95652092 TTCAGTACTTACAGAGGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
196 TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
95652157 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
261 CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
*
95652222 ATAGATATAGTTTTGGCATGTAAGTATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
326 ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
95652287 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
391 AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
95652352 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
456 TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
*
95652417 TATATTTAGTACCTTTTTGGTTGGT-AAACAAATGGTACAATATGGGATGAACTTAGTTAAGCAT
521 TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
95652481 TAGTTGAATAATTGATCAA-TTGTTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGT
586 TAGTTGAATAATTGATCAATTTG-TGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGT
95652545 GCCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCG
650 GCCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCG
*
95652610 GGACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTCCTCTGAGG
715 GGACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGG
*
95652675 TGTGTTTGGGAGGTCCCAATTTCGAGCCTTAACTTGGGCTAAGTTTTGG-TTTTATTTGAATTAA
780 TGTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAA
95652739 GCCTGACTTTTGGTT
845 GCCTGACTTTTGGTT
95652754 TTTATACGAG
Statistics
Matches: 9104, Mismatches: 122, Indels: 24
0.98 0.01 0.00
Matches are distributed among these distances:
928 249 0.03
929 548 0.06
930 1598 0.18
931 2540 0.28
932 3465 0.38
933 704 0.08
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.41
Consensus pattern (932 bp):
TTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGTTA
GACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTTTG
TAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCTCT
TTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTTGG
CCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTGGA
ATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTTTG
AAGGATGGATGAAGGTATGACAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAA
TGTGGTGACTTGGTACATTAGTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGG
TATATTTAGTACCTTTTTGGTTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCAT
TAGTTGAATAATTGATCAATTTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTG
CCATTTGTGACGCCCCAAATTTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGG
GACTTTTGTTTTGAATCATTTTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGT
GTGTTTGGGAGGTCCCAATTTTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAG
CCTGACTTTTGGTTGATGGGCTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTG
GTCTAGTGGTTAAGTGGCAAGG
Found at i:95658339 original size:29 final size:28
Alignment explanation
Indices: 95658305--95658433 Score: 120
Period size: 29 Copynumber: 4.6 Consensus size: 28
95658295 TACTCGATTT
* *
95658305 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-C-ATTTCCAGCA
** * * *
95658334 CGCACACACAGTGCCATGC-CTTCGAGCT
1 CGCACACTTAGTGCCAT-CATTTCCAGCA
95658362 CGCACACTTAGTGCCAT-ATTTCCAGCA
1 CGCACACTTAGTGCCATCATTTCCAGCA
* *
95658389 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAT-CATTTCCAGCA
95658418 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
95658434 ATCTCGTCAC
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
27 24 0.29
28 18 0.21
29 42 0.50
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCCATCATTTCCAGCA
Found at i:95665514 original size:29 final size:29
Alignment explanation
Indices: 95665480--95665611 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
95665470 TACTCGATTT
** * *
95665480 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
** *** * *
95665509 CGCACACACAGTGCCATGCCTTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
95665538 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
95665567 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
95665596 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
95665612 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 3 0.03
29 83 0.97
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:95669505 original size:931 final size:932
Alignment explanation
Indices: 95666746--95670989 Score: 8212
Period size: 931 Copynumber: 4.6 Consensus size: 932
95666736 GTTACAATGG
*
95666746 CAGGGTAAATATGCTTATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
*
95666811 GTTACAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
95666876 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
95666941 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
95667006 TTCTGTAATTTCGGCTTTTGGGATT-TTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
*
95667070 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
*
95667135 TTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
95667200 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
*
95667265 GGTTAGTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
521 GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
95667330 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
586 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
95667395 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
651 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
95667460 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
716 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
95667525 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
781 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
95667590 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
846 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
95667655 TGAAGGATGGATGAAGGTATGA
911 TGAAGGATGGATGAAGGTATGA
95667677 CAGGGTAAATATGCATATGGTAGGTG---TTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
95667739 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
95667804 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
95667869 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
95667934 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
*
95667999 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAATT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
*
95668064 TTGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
95668129 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
* *
95668194 GGTTATTTATTCTCATATTGGATTGGGTTTTCATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
521 GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
95668259 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
586 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
95668324 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
651 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
* *
95668389 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATTGCATGTATAGGTCTTTTGGCTAATGTT
716 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
*
95668454 GGACATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
781 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
95668519 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGG-TAATGTTTGGCTTGTTATGTT
846 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
95668583 TGAAGGATGGATGAAGGTATGA
911 TGAAGGATGGATGAAGGTATGA
95668605 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
95668670 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
95668735 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
95668800 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
95668865 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
95668930 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
95668995 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
95669060 CTTATAAGAATTTATTGGTAGGAATTTAACA-AATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
95669124 GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
521 GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
95669189 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
586 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
95669254 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
651 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
95669319 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
716 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
95669384 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
781 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
95669449 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
846 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
95669514 TGAAGGATGGATGAAGGTATGA
911 TGAAGGATGGATGAAGGTATGA
*
95669536 CACGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
*
95669601 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTGTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
95669666 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
95669731 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
*
95669796 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGAGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
95669861 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
95669926 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
*
95669991 CTTATAAGAATTTATTGGTAGGAATTTAACAAAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
*
95670056 GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTTGCAAGGT
521 GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
*
95670121 TAGACTGTATGTGTCACGGACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
586 TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
*
95670186 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCG
651 TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
95670251 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
716 CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
95670316 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
781 GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
95670381 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
846 GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
95670446 TGAAGGATGGATGAAGGTATGA
911 TGAAGGATGGATGAAGGTATGA
*
95670468 CACGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
1 CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
*
95670533 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAATACCTTTTTGG
66 GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
95670598 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
131 TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
* *
95670663 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATATGCCATTTATGACGCCCCAAAT
196 TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
* *
95670728 TTCTTTAATTTCGGGTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
261 TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
95670793 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
326 TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
95670858 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
391 TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
*
95670923 CTTATAAGAATTTATTGGTAGGAATTTAACATAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
456 CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
95670988 GG
521 GG
95670990 GATTATGCCT
Statistics
Matches: 3280, Mismatches: 27, Indels: 11
0.99 0.01 0.00
Matches are distributed among these distances:
928 324 0.10
929 598 0.18
930 396 0.12
931 1006 0.31
932 956 0.29
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (932 bp):
CAGGGTAAATATGCATATGGTAGGTGTTATTATGAGGTATGTGAATGTGGTGACTTGGTACATTA
GTTATAAGTGAATTATATGAGTTCTTAGAGCTAATTCTTGAATGGTATATTTAGTACCTTTTTGG
TTGGTAAAACAAATGGTACAATATGGTATGAACTTAGTTAAGCATTAGTTGAATAATTGATCAAT
TTGTGTTTATATTGGCACATGTTTTAAATATAGTTATTTGATGTGCCATTTGTGACGCCCCAAAT
TTCTGTAATTTCGGCTTTTGGGATTGTTGAGCTTGGAAATATCGGGACTTTTGTTTTGAATCATT
TTGGCATAAAATATATGTGGTTTAAGAGGTTATGTGCTCTGAGGTGTGTTTGGGAGGTCCCAAGT
TCGAGCCTTAACTTGGGCTAAGTTTTGGTTTTTATTTGAATTAAGCCTGACTTTTGGTTGATGGG
CTTATAAGAATTTATTGGTAGGAATTTAACAGAATGGGCCTGCTGGTCTAGTGGTTAAGTGGCAA
GGTTAGTTATTCTCATATTGGATTGGGTTTACATGCTTTGTGGTTGTATATTGTATTGGCAAGGT
TAGACTGTATGTGTCACGAACTTACAAAGCATGACATGCTTACTTTGTGTTGTTTTTCTATGTTT
TGTAGTGGTCAGAAGCTCGTTCGAGTTGGAAAGTTGTTGGAGATCTATCACACTATATATCAGCT
CTTTCAGTACTTACAGATGTTTAATTTTGGTTATAATGGCATGTATAGGTATTTTGGCTAATGTT
GGCCATGTATTTTGGTTGTTGAAATGACCATTTGGTTTGGCTTGTATCATGGCATTTTTGTAGTG
GAATAGATATAGTTTTGGCATGTAAATATTAGCTTTAGAATGGTTAATGTTTGGCTTGTTATGTT
TGAAGGATGGATGAAGGTATGA
Found at i:95679289 original size:34 final size:34
Alignment explanation
Indices: 95679250--95679317 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
95679240 TCTCAACCCG
95679250 AGGGTTTAAGCACATACCTGTCAAATTTTCTCAT
1 AGGGTTTAAGCACATACCTGTCAAATTTTCTCAT
*
95679284 AGGGTTTAAGCACATACTTGTCAAATTTTCTCAT
1 AGGGTTTAAGCACATACCTGTCAAATTTTCTCAT
95679318 TCACCACACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (34 bp):
AGGGTTTAAGCACATACCTGTCAAATTTTCTCAT
Found at i:95686565 original size:46 final size:46
Alignment explanation
Indices: 95686510--95686690 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
95686500 TAGGATGGTT
*
95686510 GAGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* *
95686556 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
95686602 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
95686649 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95686691 GCAGGTTACA
Statistics
Matches: 117, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 3 0.03
46 70 0.60
47 33 0.28
48 3 0.03
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:95686671 original size:93 final size:93
Alignment explanation
Indices: 95686512--95686682 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
95686502 GGATGGTTGA
* * *
95686512 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
95686577 TGAGTCCGAGTTCCTGAGATGTAACTAG
66 TGAGTCCGAGTTCCTGAGATGTAACTAG
*
95686605 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
95686670 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
95686683 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCCTGAGATGTAACTAG
Found at i:95688171 original size:14 final size:14
Alignment explanation
Indices: 95688154--95688185 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
95688144 AAATATCAAC
*
95688154 TAAAAATTAAAATT
1 TAAAAATCAAAATT
95688168 TAAAAATCAAAATT
1 TAAAAATCAAAATT
95688182 TAAA
1 TAAA
95688186 CTAAAGATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAATCAAAATT
Found at i:95688195 original size:19 final size:18
Alignment explanation
Indices: 95688168--95688206 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
95688158 AATTAAAATT
*
95688168 TAAAAATCAAAATTTAAAC
1 TAAAAATC-AAATTCAAAC
*
95688187 TAAAGATCAAATTCAAAC
1 TAAAAATCAAATTCAAAC
95688205 TA
1 TA
95688207 TTTATAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.26
Consensus pattern (18 bp):
TAAAAATCAAATTCAAAC
Found at i:95688436 original size:33 final size:33
Alignment explanation
Indices: 95688399--95688463 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
95688389 TATTCAAAAA
95688399 TTAGTCAAAAATAAATACATTAAAAGCACCAAT
1 TTAGTCAAAAATAAATACATTAAAAGCACCAAT
* *
95688432 TTAGTTAAAAATAAATACATTAAAGGCACCAA
1 TTAGTCAAAAATAAATACATTAAAAGCACCAA
95688464 CTTAACTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.54, C:0.14, G:0.08, T:0.25
Consensus pattern (33 bp):
TTAGTCAAAAATAAATACATTAAAAGCACCAAT
Found at i:95689225 original size:2 final size:2
Alignment explanation
Indices: 95689218--95689242 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
95689208 TATGGAGATT
95689218 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
95689243 CAACATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95693190 original size:53 final size:53
Alignment explanation
Indices: 95693126--95693232 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
95693116 CTTTCCTTTT
* * * * *
95693126 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTA
1 TAAACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCATTGCCTTA
* * *
95693179 TAAACTCACCATTGACATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTA
1 TAAACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCATTGCCTTA
95693232 T
1 T
95693233 CGTAGTTATC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (53 bp):
TAAACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCATTGCCTTA
Found at i:95698594 original size:17 final size:18
Alignment explanation
Indices: 95698572--95698605 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95698562 TTTGGGTCGA
*
95698572 GTGGG-CCACACGGGCAT
1 GTGGGCCCAAACGGGCAT
95698589 GTGGGCCCAAACGGGCA
1 GTGGGCCCAAACGGGCA
95698606 GATCACATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.29, G:0.41, T:0.09
Consensus pattern (18 bp):
GTGGGCCCAAACGGGCAT
Found at i:95699141 original size:34 final size:34
Alignment explanation
Indices: 95699089--95699156 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
95699079 GCATTTTTGA
* *
95699089 CACTATACTGAGATGGGC-TAAGGCCCAA-ACTGT
1 CACTATACTGAAAAGGGCTTAA-GCCCAAGACTGT
95699122 CACTGATACTGAAAAGGGCTTAAGCCCAAGACTGT
1 CACT-ATACTGAAAAGGGCTTAAGCCCAAGACTGT
95699157 TCAACTGTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 4 0.13
34 18 0.60
35 8 0.27
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.21
Consensus pattern (34 bp):
CACTATACTGAAAAGGGCTTAAGCCCAAGACTGT
Found at i:95701039 original size:47 final size:47
Alignment explanation
Indices: 95700932--95701104 Score: 168
Period size: 47 Copynumber: 3.6 Consensus size: 47
95700922 AATGTGATTT
* * * *
95700932 CCGTATAAGACCATAGCTGGGCTATGGCTTCAGAGAAATGTGATATGTGCTT
1 CCGTATAAGACCATAGCCGGGATATGGCAT-A-AG---TGTGATATGTGCTA
* **
95700984 CCGTATAAGACCATATCCGGGATATGGCATCGGTGTGATATGTGCTA
1 CCGTATAAGACCATAGCCGGGATATGGCATAAGTGTGATATGTGCTA
* * *
95701031 CTGTATAAGACCATAGCTGGGATATGGCATAAGTGTGATATGTGAT-
1 CCGTATAAGACCATAGCCGGGATATGGCATAAGTGTGATATGTGCTA
* * * *
95701077 CCGTGTAAGACCATGGCTGGGCTATGGC
1 CCGTATAAGACCATAGCCGGGATATGGC
95701105 CTCGGTATGT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
46 24 0.23
47 53 0.51
50 1 0.01
52 26 0.25
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (47 bp):
CCGTATAAGACCATAGCCGGGATATGGCATAAGTGTGATATGTGCTA
Found at i:95709022 original size:40 final size:39
Alignment explanation
Indices: 95708967--95709089 Score: 183
Period size: 40 Copynumber: 3.1 Consensus size: 39
95708957 TTCGGCAATC
95708967 CAACTAACCAAGGATGTTTATTGTGGGAAGAAGATTAATT
1 CAACTAACCAAGGATGTTTATT-TGGGAAGAAGATTAATT
95709007 CAACTAACCAAGGATGTTTATTCTGGGAAGAAGATTAATT
1 CAACTAACCAAGGATGTTTATT-TGGGAAGAAGATTAATT
* * * *
95709047 AAAATAACCAAGGATATTTATTTCGGGAAGAAGATTAACT
1 CAACTAACCAAGGATGTTTATTT-GGGAAGAAGATTAATT
95709087 CAA
1 CAA
95709090 AAAATAGGAG
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (39 bp):
CAACTAACCAAGGATGTTTATTTGGGAAGAAGATTAATT
Found at i:95711960 original size:27 final size:28
Alignment explanation
Indices: 95711904--95711973 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
95711894 AAATTTGTAC
95711904 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
95711932 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
95711959 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95711974 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:95711984 original size:27 final size:27
Alignment explanation
Indices: 95711904--95711985 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
95711894 AAATTTGTAC
* *
95711904 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
95711932 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
95711959 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
95711986 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:95719890 original size:27 final size:28
Alignment explanation
Indices: 95719834--95719903 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
95719824 AAATTTGTAC
95719834 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
95719862 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
95719889 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95719904 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:95719914 original size:27 final size:27
Alignment explanation
Indices: 95719834--95719915 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
95719824 AAATTTGTAC
* *
95719834 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
95719862 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
95719889 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
95719916 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:95722000 original size:43 final size:43
Alignment explanation
Indices: 95721918--95722059 Score: 139
Period size: 43 Copynumber: 3.3 Consensus size: 43
95721908 TGAGACATCG
* * *
95721918 TGTAAGACCGTGTCTGGGACACAGGCCTC-A-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAAAGGCATCGATATT--GATTTACA
* **
95721961 AGTAAGACCATGTCTGGGACATCGGCATCG-TATCTGATTT-CA
1 TGTAAGACCATGTCTGGGACAAAGGCATCGATAT-TGATTTACA
* * * *
95722003 TGTAAGACCCTGTCTGTGATAAAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAAAGGCATCGATATTGATTTACA
95722046 TGTAAGACCATGTC
1 TGTAAGACCATGTC
95722060 CAGGACGTCG
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
42 31 0.38
43 47 0.58
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAAAGGCATCGATATTGATTTACA
Found at i:95728021 original size:3 final size:3
Alignment explanation
Indices: 95728015--95728053 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
95728005 TTGTTTTTTT
** *
95728015 TAA TAA TAA TAA TAA TAA TAA GGA TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
95728054 ATATTATGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:95728476 original size:9 final size:9
Alignment explanation
Indices: 95728444--95728492 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
95728434 ATTAAAACAC
95728444 AATAGTAA-
1 AATAGTAAT
*
95728452 AATAGTAAC
1 AATAGTAAT
*
95728461 AACAGTAAT
1 AATAGTAAT
95728470 AATAGTAAT
1 AATAGTAAT
*
95728479 AATAATAATT
1 AATAGTAA-T
95728489 AATA
1 AATA
95728493 AGTTAAGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
8 8 0.23
9 22 0.63
10 5 0.14
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (9 bp):
AATAGTAAT
Found at i:95728588 original size:3 final size:3
Alignment explanation
Indices: 95728580--95728757 Score: 100
Period size: 3 Copynumber: 58.3 Consensus size: 3
95728570 TTAATTAGTT
* * * *
95728580 TAA TAA TAA TAA TAA TAA TAA TGAA GACA -AA -AA TAT TAA GTTA CAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TA-A TAA TAA TAA TAA -TAA TAA
* * * * *
95728626 TAA TAA -AA TAA TAA TAG TGA TAA TAA TAG T-A TAT TAGA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * *
95728670 TAA TAA -AA TAA TAA GTAA TGA TAA TAGA GT-A TAAA TAA TAG TTA TGAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TA-A -TAA T-AA TAA TAA TAA T-AA
*
95728718 -AA TAA TAA CAA GTAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA T
95728758 TGTAGCACCC
Statistics
Matches: 134, Mismatches: 25, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
2 11 0.08
3 106 0.79
4 16 0.12
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:95731384 original size:26 final size:26
Alignment explanation
Indices: 95731348--95731444 Score: 176
Period size: 26 Copynumber: 3.7 Consensus size: 26
95731338 CATGTAATTC
95731348 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95731374 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95731400 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
95731426 TTATCATGGAATATTTACC
1 TTATCATGAAACATTTACC
95731445 ATAAATTATG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95731812 original size:3 final size:3
Alignment explanation
Indices: 95731759--95731792 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
95731749 GGGGCGTTAC
95731759 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
95731793 GTGACGATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:95739542 original size:40 final size:40
Alignment explanation
Indices: 95739459--95739666 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
95739449 CGGGATTTAA
* * * * * *
95739459 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
95739499 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
95739539 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
95739579 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
95739619 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
95739659 CCGGATAT
1 CCGGATAT
95739667 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:95739579 original size:80 final size:80
Alignment explanation
Indices: 95739485--95739666 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
95739475 GCTCGATTGT
* * *** * * * **
95739485 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
95739550 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
95739565 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
95739630 TACTAGCATAATTGC
66 AACTAGCACAAATGC
95739645 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
95739667 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:95741383 original size:14 final size:14
Alignment explanation
Indices: 95741364--95741391 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95741354 CAACAAATTC
95741364 TTGAGTTGAAGATG
1 TTGAGTTGAAGATG
95741378 TTGAGTTGAAGATG
1 TTGAGTTGAAGATG
95741392 AAATTAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (14 bp):
TTGAGTTGAAGATG
Found at i:95743098 original size:2 final size:2
Alignment explanation
Indices: 95743091--95743120 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
95743081 TTCAAATGAT
95743091 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95743121 ATTGAGTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95746008 original size:32 final size:32
Alignment explanation
Indices: 95745972--95746089 Score: 98
Period size: 32 Copynumber: 3.8 Consensus size: 32
95745962 GGTATATAAA
*
95745972 AAATTAAATTA-ATATATTATTTATATATCATT
1 AAATTAAATTATATA-AATATTTATATATCATT
* *
95746004 AAATTAAATTATTTAAATATTTATGTATCATT
1 AAATTAAATTATATAAATATTTATATATCATT
* ** * * *
95746036 ATATGGAATTATTTAAATA-TAATTTATCATT
1 AAATTAAATTATATAAATATTTATATATCATT
* * *
95746067 ATATCAAATTATTTAAAT-TTTAT
1 AAATTAAATTATATAAATATTTAT
95746090 TTTATTATTA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
31 29 0.40
32 42 0.58
33 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (32 bp):
AAATTAAATTATATAAATATTTATATATCATT
Found at i:95746100 original size:32 final size:31
Alignment explanation
Indices: 95745991--95746102 Score: 125
Period size: 32 Copynumber: 3.5 Consensus size: 31
95745981 TAATATATTA
* * *
95745991 TTTATATATCATTAAATTAAATTATTTAAAT
1 TTTATTTATCATTATATCAAATTATTTAAAT
* **
95746022 ATTTATGTATCATTATATGGAATTATTTAAAT
1 -TTTATTTATCATTATATCAAATTATTTAAAT
* *
95746054 ATAATTTATCATTATATCAAATTATTTAAAT
1 TTTATTTATCATTATATCAAATTATTTAAAT
*
95746085 TTTATTTTATTATTATAT
1 TTTA-TTTATCATTATAT
95746103 TTAATTTTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
31 28 0.42
32 39 0.58
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.54
Consensus pattern (31 bp):
TTTATTTATCATTATATCAAATTATTTAAAT
Found at i:95746667 original size:21 final size:21
Alignment explanation
Indices: 95746607--95746667 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 21
95746597 TAATACATCA
*
95746607 AAAATATTAAAAACATTAAAAT
1 AAAATTTTAAAAA-ATTAAAAT
*
95746629 AAATATTTTCCAACAAATTGAAAAT
1 AAA-ATTTT--AAAAAATT-AAAAT
95746654 -AAATTTTAAAAAAT
1 AAAATTTTAAAAAAT
95746668 ATGTATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.19
22 3 0.09
23 9 0.28
24 5 0.16
25 9 0.28
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATTTTAAAAAATTAAAAT
Found at i:95747623 original size:39 final size:40
Alignment explanation
Indices: 95747578--95747666 Score: 137
Period size: 39 Copynumber: 2.2 Consensus size: 40
95747568 AAAAATTATA
*
95747578 TTTAATATAATAAAATATTTATTATATGTATCTGT-GT-TT
1 TTTAATATAATAAAATATTTATTATATGTAT-GGTAGTATT
*
95747617 TTTAATATAATAAAATATTTATTATATTTATGGTAGTATT
1 TTTAATATAATAAAATATTTATTATATGTATGGTAGTATT
95747657 TTTAATATAA
1 TTTAATATAA
95747667 ATACTTTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
38 2 0.04
39 32 0.70
40 12 0.26
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (40 bp):
TTTAATATAATAAAATATTTATTATATGTATGGTAGTATT
Found at i:95756340 original size:2 final size:2
Alignment explanation
Indices: 95756333--95756373 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
95756323 TGTGATTAAA
95756333 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
95756374 ATATATATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:95756378 original size:2 final size:2
Alignment explanation
Indices: 95756373--95756407 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95756363 TCTCTCTCTC
95756373 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95756408 GTTAGTATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95757353 original size:15 final size:16
Alignment explanation
Indices: 95757326--95757355 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
95757316 TTAAGTTAAA
95757326 GAAAGTAAATGAAATG
1 GAAAGTAAATGAAATG
95757342 GAAAGT-AATGAAAT
1 GAAAGTAAATGAAAT
95757356 ACAAATGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (16 bp):
GAAAGTAAATGAAATG
Found at i:95757577 original size:50 final size:51
Alignment explanation
Indices: 95757519--95757621 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
95757509 TCTTGACATG
95757519 TATAAATTTCATATAT-AAATGGATTGATATGACTAAAGTTTATACGAGCT
1 TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
95757569 TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
1 TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
95757620 TA
1 TA
95757622 CTAAGCATTC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 16 0.31
51 36 0.69
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.38
Consensus pattern (51 bp):
TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
Found at i:95764072 original size:49 final size:49
Alignment explanation
Indices: 95763957--95764111 Score: 145
Period size: 49 Copynumber: 3.2 Consensus size: 49
95763947 ATGCATGGTT
* * *
95763957 TAATTAAAATGCAAACTAAATAAACA-AATGAGCTACATAATGCATGACA
1 TAATTAAAATGCAAACTTAATAAACATAA-GAGATACTTAATGCATGACA
* * * *
95764006 TAATTTAATATGC-AACTTAATTAACATAAGAGTTACTTAATACATGACA
1 TAA-TTAAAATGCAAACTTAATAAACATAAGAGATACTTAATGCATGACA
** * * * *
95764055 TAATTAAAACACAAACTTTATGAACAT-AGAGATGCTTTAATGCATGACT
1 TAATTAAAATGCAAACTTAATAAACATAAGAGATAC-TTAATGCATGACA
95764104 TAATTAAA
1 TAATTAAA
95764112 TGTAGAACAC
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
48 12 0.14
49 65 0.75
50 10 0.11
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.30
Consensus pattern (49 bp):
TAATTAAAATGCAAACTTAATAAACATAAGAGATACTTAATGCATGACA
Found at i:95764165 original size:32 final size:32
Alignment explanation
Indices: 95764117--95764183 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
95764107 TTAAATGTAG
* *
95764117 AACACATTATGTAAGTCATAATTAAATATGCA
1 AACACATAATGCAAGTCATAATTAAATATGCA
95764149 AACACATAATGCAAGTCATAATTAAATATGCA
1 AACACATAATGCAAGTCATAATTAAATATGCA
95764181 AAC
1 AAC
95764184 TTATTAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (32 bp):
AACACATAATGCAAGTCATAATTAAATATGCA
Found at i:95765489 original size:55 final size:53
Alignment explanation
Indices: 95765417--95765522 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
95765407 AACTATAACT
* *
95765417 AAGTTTTCGTATTTCTAC-ATAAAGCTAAT-ATTTCTTATTATCATATAATTAAACA
1 AAGTTGTCGTATTTCTACAATAAAG-T-ATGA--TCTAATTATCATATAATTAAACA
95765472 AAGTTGTCGTATTTCTACAATAAAGTATGATCTAATTATCATATAATTAAA
1 AAGTTGTCGTATTTCTACAATAAAGTATGATCTAATTATCATATAATTAAA
95765523 ATAAGAGTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
53 20 0.43
54 2 0.04
55 19 0.40
56 6 0.13
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (53 bp):
AAGTTGTCGTATTTCTACAATAAAGTATGATCTAATTATCATATAATTAAACA
Found at i:95772028 original size:29 final size:28
Alignment explanation
Indices: 95771978--95772032 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
95771968 TCTTCTCAAA
**
95771978 TTTAAAATTTAGTCTTTATACTTTTATT
1 TTTAAAATTTAGTCCCTATACTTTTATT
*
95772006 TTTAAGAATTTAGTCCCTCTACTTTTA
1 TTTAA-AATTTAGTCCCTATACTTTTA
95772033 AGATTTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.27, C:0.13, G:0.05, T:0.55
Consensus pattern (28 bp):
TTTAAAATTTAGTCCCTATACTTTTATT
Found at i:95775800 original size:17 final size:15
Alignment explanation
Indices: 95775778--95775813 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
95775768 GATGTGAACA
95775778 TATTTTATTTAGATTTT
1 TATTTTATTT--ATTTT
95775795 TATTTTATTTATTTT
1 TATTTTATTTATTTT
95775810 TATT
1 TATT
95775814 ATCTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
17 10 0.53
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (15 bp):
TATTTTATTTATTTT
Found at i:95776626 original size:18 final size:17
Alignment explanation
Indices: 95776600--95776655 Score: 67
Period size: 18 Copynumber: 3.2 Consensus size: 17
95776590 TACAGGCAAA
*
95776600 GCCAAACTGAGCATGTGG
1 GCCACACTG-GCATGTGG
*
95776618 GCCACACTGGCTTGTGG
1 GCCACACTGGCATGTGG
*
95776635 GCCCACACGGGCATGTGG
1 G-CCACACTGGCATGTGG
95776653 GCC
1 GCC
95776656 CATTATACTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
17 10 0.30
18 23 0.70
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.16
Consensus pattern (17 bp):
GCCACACTGGCATGTGG
Found at i:95776656 original size:18 final size:18
Alignment explanation
Indices: 95776610--95776657 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
95776600 GCCAAACTGA
*
95776610 GCATGTGGG-CCACACTG
1 GCATGTGGGCCCACACGG
*
95776627 GCTTGTGGGCCCACACGG
1 GCATGTGGGCCCACACGG
95776645 GCATGTGGGCCCA
1 GCATGTGGGCCCA
95776658 TTATACTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.17
Consensus pattern (18 bp):
GCATGTGGGCCCACACGG
Found at i:95778693 original size:131 final size:129
Alignment explanation
Indices: 95778257--95778736 Score: 376
Period size: 131 Copynumber: 3.7 Consensus size: 129
95778247 TTGCCTCACC
* * * ** *
95778257 TTAGAAAATACGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAACGGGAAATTACAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACAAC
* * * * *
95778322 CCAGCACGATAGGGTACTATTCCCCAAATTGTCAAACATCGACTATTTCTTTCGTTTTAAAGGGT
66 CCAGCACGATAGGGCACGATT-CCCAAATTGTCAAACACCGAATA-TTCCTTCGTTTTAAA-GGT
95778387 TT
128 TT
** * * ** * * * * *
95778389 TTAGAAAATGTGAGTGAAATTTCGAAGGGATCTTCGATCGTTTAGAAAAAATGAA-AAAGCGCAA
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAA-CAAGAAATCACAA
* * * * * *
95778453 CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAAC-CTCTAACA-TCCTTTGTTTTGAAAGGT
65 CCCAGCACGATAGGGCACGATTCCCAAATTGTCAAACAC-CGAATATTCCTTCGTTTT-AAAGGT
95778516 TT
128 TT
* * * * * *
95778518 TTA-ATAAACATGAGTGAAA-ACCTAAAGGAATATTCTATTGTTTTGAGCAAACAAGAAATCACA
1 TTAGA-AAACATGAGTGAAATTCC-GAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACA
* * * *
95778581 ACCCAGCACGATAGGGCATGATTCCCGAATTGTTAAACACCGAGTATTGCCTTCGTTTTAAAGGA
64 ACCCAGCACGATAGGGCACGATTCCCAAATTGTCAAACACCGAATATT-CCTTCGTTTTAAAGG-
95778646 TTT
127 TTT
* * * ** * * ** **
95778649 TTAGAAGACCTAAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACAAC
* *
95778714 CCAGTACGTTAGGGCACGATTCC
66 CCAGCACGATAGGGCACGATTCC
95778737 GCGAATCGCC
Statistics
Matches: 267, Mismatches: 69, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
128 4 0.01
129 90 0.34
130 10 0.04
131 94 0.35
132 69 0.26
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (129 bp):
TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACAAC
CCAGCACGATAGGGCACGATTCCCAAATTGTCAAACACCGAATATTCCTTCGTTTTAAAGGTTT
Found at i:95781928 original size:132 final size:132
Alignment explanation
Indices: 95781690--95782381 Score: 1120
Period size: 132 Copynumber: 5.2 Consensus size: 132
95781680 CTTCAAGTAG
* * * * *
95781690 CTTCGATATGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTTAGCCTACTCCACTACA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAAT-TTTAGCCTACTCCACTACA
* * *
95781755 ACTTTAGGGAGCTATGATGGTGGCTTAAATCTGTTTCACTGCAACTTCGGGAAGCCAAGATTCGC
65 ACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGC
95781820 CGT
130 CGT
* * *
95781823 CTTCGATCTGCTTCACTGCAACTTCAGTGAAATAAGACCTAAAATTTCAGCCTACTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTTAGCCTACTCCACTACAA
* *
95781888 CTTTAGAGAGCT-GAGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCAC
66 CTTTAGGGAGCTAG-GATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGC
95781952 CGT
130 CGT
* *
95781955 CTTCGATCTGCTTCACTTG-AACTTCAGGGAAATAAGATCTAAAATTTTAGCCTATTCAACTACA
1 CTTCGATCTGCTTCAC-TGCAACTTCAGGGAAATAAGATCTAAAATTTTAGCCTACTCCACTACA
* *
95782019 ACTTCAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGC
65 ACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGC
95782084 CGT
130 CGT
*
95782087 CTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTTAGCCTACTCCACTACAA
*
95782152 CTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTC-CTGCAACTTCAGAAAGCCAAGATTCGCC
66 CTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCC
95782216 GT
131 GT
*
95782218 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTTAGCCTACTCCACTACAA
* *
95782283 CTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCACC
66 CTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCC
95782348 GT
131 GT
* *
95782350 TTTCGATTTGCTTCACTGCAACTTCAGGGAAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAA
95782382 CATGATCGGT
Statistics
Matches: 519, Mismatches: 35, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
131 129 0.25
132 349 0.67
133 41 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
CTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTTAGCCTACTCCACTACAA
CTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCC
GT
Found at i:95782413 original size:263 final size:264
Alignment explanation
Indices: 95781690--95782381 Score: 1156
Period size: 263 Copynumber: 2.6 Consensus size: 264
95781680 CTTCAAGTAG
* * * *
95781690 CTTCGATATGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTTAGCCTACTCCACTACA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAAT-TTTAGCCTACTCCACTACA
* ** *
95781755 ACTTTAGGGAGCTATGATGGTGGCTTAAATCTGTTTCACTGCAACTTCGGGAAGCCAAGATTCGC
65 ACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGC
* *
95781820 CGTCTTCGATCTGCTTCACTGCAACTTCAGTGAAATAAGACCTAAAATTTCAGCCTACTCCACTA
130 CGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTA
*
95781885 CAACTTTAGAGAGCTGAGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTC
195 CAACTTTAGAGAGCTGAGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGAAAGCCAAGATTC
95781950 ACCGT
260 ACCGT
* * *
95781955 CTTCGATCTGCTTCACTTG-AACTTCAGGGAAATAAGATCTAAAATTTTAGCCTATTCAACTACA
1 CTTCGATCTGCTTCAC-TGCAACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACA
*
95782019 ACTTCAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGC
65 ACTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGC
95782084 CGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTA
130 CGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTA
*
95782149 CAACTTTAGGGAGCT-AGGATGGTGGCTTAAATCTGCTTC-CTGCAACTTCAGAAAGCCAAGATT
195 CAACTTTAGAGAGCTGA-GATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGAAAGCCAAGATT
*
95782212 CGCCGT
259 CACCGT
95782218 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAA
*
95782283 CTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCACC
66 CTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCC
* *
95782348 GTTTTCGATTTGCTTCACTGCAACTTCAGGGAAA
131 GTCTTCGATCTGCTTCACTGCAACTTCAGGGAAA
95782382 CATGATCGGT
Statistics
Matches: 400, Mismatches: 24, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
262 2 0.00
263 183 0.46
264 176 0.44
265 37 0.09
266 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (264 bp):
CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAA
CTTTAGGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCC
GTCTTCGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTAC
AACTTTAGAGAGCTGAGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGAAAGCCAAGATTCA
CCGT
Found at i:95794192 original size:129 final size:130
Alignment explanation
Indices: 95793964--95794251 Score: 282
Period size: 129 Copynumber: 2.2 Consensus size: 130
95793954 ATGGGAAATT
* * * * * * * *
95793964 ACAACCCAGCACGATAGGGTACTATTCCCCGAATTGTCAAACATCG-ACTATTTCTTTCGTTTTA
1 ACAACCCAGCACGATAGGGCACGATT-CTCAAATCGCCAAACCTCGAAC-A-TCCTTTCGTTTTA
* * * * *
95794028 AAGGGTTTTTAGAAAACGTGAGTGAAATTCCAAAGGGATCTTCGA-TCGTTTAGAACAAATGAAA
63 AAGGGTTTTTAGAAAACATGAGTGAAATACCAAAGGAATATTCGATTC-TTTAGAACAAACGAAA
95794092 AAGC
127 AAGC
**
95794096 GTAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACCTCGAACATCCTTT-GTTTTGAAA
1 ACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACCTCGAACATCCTTTCGTTTT-AAA
* * * *
95794160 -GGTTTTTA-ATAAACATGAGTGAAA-ACCTAAAGGAATATTTGATTCTTTTGAGCAAACGAGAA
65 GGGTTTTTAGA-AAACATGAGTGAAATACC-AAAGGAATATTCGATTCTTTAGAACAAACGAAAA
*
95794222 ATC
128 AGC
*
95794225 ACAACCCAGCACGATAGGGCATGATTC
1 ACAACCCAGCACGATAGGGCACGATTC
95794252 CCGAATTGTC
Statistics
Matches: 128, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
128 3 0.02
129 76 0.59
130 10 0.08
131 15 0.12
132 24 0.19
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (130 bp):
ACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACCTCGAACATCCTTTCGTTTTAAAG
GGTTTTTAGAAAACATGAGTGAAATACCAAAGGAATATTCGATTCTTTAGAACAAACGAAAAAGC
Found at i:95794340 original size:131 final size:130
Alignment explanation
Indices: 95793904--95794383 Score: 392
Period size: 131 Copynumber: 3.7 Consensus size: 130
95793894 TTGCCTCACC
* * * ** * * * * *
95793904 TTAGAAAATACGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACTAATGGGAAATTACAAC
1 TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAAC
* * * * * *
95793969 CCAGCACGATAGGGTACTATTCCCCGAATTGTCAAACATCGACTATTTCTTTCGTTTTAAAGGGT
66 CCAGCACGATAGGGCACGATT-CCCGAATTGTCAAACACCGAATA-TTCCTTCGTTTTAAAAGGT
95794034 TT
129 TT
* * * * ** * * * * **
95794036 TTAGAAAACGTGAGTGAAATTCCAAAGGGATCTTCGATCGTTTAGAACAAATGAAAAAGCGTAAC
1 TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAAC
* * * * * * *
95794101 CCAGCACGATAGGGCACGATTCTCAAATCGCCAAAC-CTCGAACA-TCCTTTGTTTTGAAAGGTT
66 CCAGCACGATAGGGCACGATTCCCGAATTGTCAAACAC-CGAATATTCCTTCGTTTTAAAAGGTT
95794164 T
130 T
* * * * *
95794165 TTA-ATAAACATGAGTGAAAA-CCTAAAGGAATATTTGATTCTTTTGAGCAAACGAGAAATCACA
1 TTAGA-AAACATGAGT-AAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACA
* * *
95794228 ACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAAGA
64 ACCCAGCACGATAGGGCACGATTCCCGAATTGTCAAACACCGAATATT-CCTTCGTTTTAAAAGG
95794293 TTT
128 TTT
* * * * * * * **
95794296 TTAGAAGACCTGAGTAAAATTTTGAAGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAAC
1 TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAAC
* *
95794361 CCAACACGTTAGGGCACGATTCC
66 CCAGCACGATAGGGCACGATTCC
95794384 GTGAATCGCC
Statistics
Matches: 272, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
128 1 0.00
129 94 0.35
130 9 0.03
131 99 0.36
132 69 0.25
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (130 bp):
TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAAC
CCAGCACGATAGGGCACGATTCCCGAATTGTCAAACACCGAATATTCCTTCGTTTTAAAAGGTTT
Found at i:95794423 original size:131 final size:132
Alignment explanation
Indices: 95794098--95794429 Score: 302
Period size: 131 Copynumber: 2.5 Consensus size: 132
95794088 GAAAAAGCGT
* * * * * * *
95794098 AACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAAC-CTCGAACAT--CCTTTGTTTTGAAA
1 AACCCAACACGATAGGGCACGATTCCCGAATCGCCAAACAC-CAAATATCGCCTTCGTTTTAAAA
* * ** * *
95794160 G-GTTTTTA-ATAAACATGAGTGAAAA-CCTAAAGGAATATTTGATTCTTTTGAGCAAACGAGAA
65 GAGTTTTTAGA-AGACCTGAGT-AAAATTTTGAAGGAATATTTGATTATTTTGAGCAAACGAGAA
95794222 ATCAC
128 ATCAC
* * * * * * *
95794227 AACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAAG
1 AACCCAACACGATAGGGCACGATTCCCGAATCGCCAAACACCAAATATCGCCTTCGTTTTAAAAG
* * *
95794292 A-TTTTTAGAAGACCTGAGTAAAATTTTGAAGGGATATTTGATTATTTTGAGCAAACGCGAAATT
66 AGTTTTTAGAAGACCTGAGTAAAATTTTGAAGGAATATTTGATTATTTTGAGCAAACGAGAAATC
*
95794356 GC
131 AC
* * * * * *
95794358 AACCCAACACGTTAGGGCACGATTCCGTGAATCGCCAAATATCAAATCTCGTCTTCGTTTT-AAA
1 AACCCAACACGATAGGGCACGATTCC-CGAATCGCCAAACACCAAATATCGCCTTCGTTTTAAAA
95794422 GAGTTTTT
65 GAGTTTTT
95794430 GAATGAATAA
Statistics
Matches: 163, Mismatches: 32, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
129 39 0.24
130 5 0.03
131 89 0.55
132 30 0.18
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (132 bp):
AACCCAACACGATAGGGCACGATTCCCGAATCGCCAAACACCAAATATCGCCTTCGTTTTAAAAG
AGTTTTTAGAAGACCTGAGTAAAATTTTGAAGGAATATTTGATTATTTTGAGCAAACGAGAAATC
AC
Found at i:95799122 original size:13 final size:13
Alignment explanation
Indices: 95799104--95799140 Score: 56
Period size: 13 Copynumber: 2.7 Consensus size: 13
95799094 TTTTAGATTC
95799104 TAAAATTTGGTTT
1 TAAAATTTGGTTT
95799117 TAAAATTTGGTTT
1 TAAAATTTGGTTT
95799130 TCAAAGATTTG
1 T-AAA-ATTTG
95799141 AAACCTTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 14 0.64
14 3 0.14
15 5 0.23
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.49
Consensus pattern (13 bp):
TAAAATTTGGTTT
Found at i:95810364 original size:16 final size:16
Alignment explanation
Indices: 95810343--95810410 Score: 82
Period size: 16 Copynumber: 4.2 Consensus size: 16
95810333 TGGTTCAATA
*
95810343 TAATGGAATAGAGCTG
1 TAATGGAATAGAACTG
*
95810359 TAATGGAGTAGAACTG
1 TAATGGAATAGAACTG
**
95810375 TAATGGAATAGAGTTG
1 TAATGGAATAGAACTG
**
95810391 TAATAAAATAGAACTG
1 TAATGGAATAGAACTG
95810407 TAAT
1 TAAT
95810411 AGCAATTCAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.43, C:0.04, G:0.25, T:0.28
Consensus pattern (16 bp):
TAATGGAATAGAACTG
Found at i:95810384 original size:32 final size:32
Alignment explanation
Indices: 95810343--95810410 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
95810333 TGGTTCAATA
** *
95810343 TAATGGAATAGAGCTGTAATGGAGTAGAACTG
1 TAATGGAATAGAGCTGTAATAAAATAGAACTG
*
95810375 TAATGGAATAGAGTTGTAATAAAATAGAACTG
1 TAATGGAATAGAGCTGTAATAAAATAGAACTG
95810407 TAAT
1 TAAT
95810411 AGCAATTCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.43, C:0.04, G:0.25, T:0.28
Consensus pattern (32 bp):
TAATGGAATAGAGCTGTAATAAAATAGAACTG
Found at i:95810482 original size:44 final size:45
Alignment explanation
Indices: 95810397--95810483 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 45
95810387 GTTGTAATAA
95810397 AATAGAACTGTAATAGCAATTCAATGGTTTGGTTGAATGGAATGG
1 AATAGAACTGTAATAGCAATTCAATGGTTTGGTTGAATGGAATGG
* *
95810442 AATAGAACTGTAATAG-TATTC-TTGTGTTTGGTTGAATGGAAT
1 AATAGAACTGTAATAGCAATTCAATG-GTTTGGTTGAATGGAAT
95810484 AGAGTTGGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
43 2 0.05
44 21 0.54
45 16 0.41
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (45 bp):
AATAGAACTGTAATAGCAATTCAATGGTTTGGTTGAATGGAATGG
Found at i:95810975 original size:2 final size:2
Alignment explanation
Indices: 95810968--95811007 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
95810958 TGTTATGTTG
95810968 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95811008 ACATATTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95816949 original size:16 final size:15
Alignment explanation
Indices: 95816910--95816951 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
95816900 TTTTTATAAA
95816910 TTTATAAATTTTTGTT
1 TTTATAAA-TTTTGTT
*
95816926 TTT-CAAATTTTGTAT
1 TTTATAAATTTTGT-T
95816941 TTTATAAATTT
1 TTTATAAATTT
95816952 CAAAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 6 0.27
15 7 0.32
16 9 0.41
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (15 bp):
TTTATAAATTTTGTT
Found at i:95817600 original size:31 final size:30
Alignment explanation
Indices: 95817524--95817642 Score: 85
Period size: 28 Copynumber: 4.1 Consensus size: 30
95817514 TTTAAGTAAT
*
95817524 TAAT-ATAAATTATTTCAAA-AATT-AATGA
1 TAATAATAAATTATTTTAAACAATTAAAT-A
95817552 TACAT-A-AAA-TATTTTAAA-AACTTAAATA
1 TA-ATAATAAATTATTTTAAACAA-TTAAATA
*
95817580 TAATAATAAATTATATTTAAACAATTTAATA
1 TAATAATAAATTAT-TTTAAACAATTAAATA
* * * *
95817611 TAATGATAAA-T-GTTTAAATAATTTAATA
1 TAATAATAAATTATTTTAAACAATTAAATA
95817639 TAAT
1 TAAT
95817643 GTTACATAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 16
0.79 0.05 0.16
Matches are distributed among these distances:
27 12 0.15
28 30 0.38
29 9 0.12
30 4 0.05
31 21 0.27
32 2 0.03
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (30 bp):
TAATAATAAATTATTTTAAACAATTAAATA
Found at i:95818461 original size:33 final size:33
Alignment explanation
Indices: 95818356--95818449 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
95818346 ACTCAAACTT
* * * *
95818356 TTACCTAGGTCTTATGCATACAACAATAAATTC
1 TTACCTAGGTCATATACATGCAACAATCAATTC
* * * *
95818389 TTACCTAAGCCATATACATGCAACTATCGATTC
1 TTACCTAGGTCATATACATGCAACAATCAATTC
95818422 TTACCTAGGTCATATACATGCAACAATC
1 TTACCTAGGTCATATACATGCAACAATC
95818450 TATTTATACC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (33 bp):
TTACCTAGGTCATATACATGCAACAATCAATTC
Found at i:95818768 original size:2 final size:2
Alignment explanation
Indices: 95818755--95818790 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
95818745 AAGCACATAC
*
95818755 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95818791 GCACAATTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:95818770 original size:12 final size:12
Alignment explanation
Indices: 95818749--95818790 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
95818739 TTTACGAAGC
*
95818749 ACATACATATAT
1 ACATATATATAT
95818761 ACATATATATAT
1 ACATATATATAT
*
95818773 ATATATATATAT
1 ACATATATATAT
*
95818785 ATATAT
1 ACATAT
95818791 GCACAATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ACATATATATAT
Found at i:95819627 original size:78 final size:78
Alignment explanation
Indices: 95819529--95819673 Score: 184
Period size: 78 Copynumber: 1.9 Consensus size: 78
95819519 ATCGTTAAAG
* * * * **
95819529 TATAATGATCTGATGTTGCTCA-CTCAAGTTGTTGAAAATCTGCAATTTATGTTGGACCTCAACC
1 TATAATAATCTGATGCTGCTCATC-CAAGCTGTCGAAAATCCACAATTTATGTTGGACCTCAACC
95819593 ATCATGGATCGCTA
65 ATCATGGATCGCTA
* * * *
95819607 TATAATAATTTGATGCTGCTCATCCAAGCTGTCGAGAATCCACAATTTATGTTGGATCTTAACCA
1 TATAATAATCTGATGCTGCTCATCCAAGCTGTCGAAAATCCACAATTTATGTTGGACCTCAACCA
95819672 TC
66 TC
95819674 GAATAAATCT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 55 0.98
79 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (78 bp):
TATAATAATCTGATGCTGCTCATCCAAGCTGTCGAAAATCCACAATTTATGTTGGACCTCAACCA
TCATGGATCGCTA
Found at i:95821966 original size:24 final size:21
Alignment explanation
Indices: 95821939--95821997 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 21
95821929 ATGAATATTT
95821939 TAAAAAATAATTTTGAAA-AA
1 TAAAAAATAATTTTGAAATAA
*
95821959 TAAATAAATAAAAATTATGAAATAA
1 TAAA-AAAT---AATTTTGAAATAA
95821984 TAAAAAATAATTTT
1 TAAAAAATAATTTT
95821998 ATTATTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 4 0.12
21 9 0.28
24 13 0.41
25 6 0.19
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (21 bp):
TAAAAAATAATTTTGAAATAA
Found at i:95822306 original size:17 final size:18
Alignment explanation
Indices: 95822286--95822319 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95822276 TTAAAATATA
95822286 ATTTTT-AGAAAAAATTT
1 ATTTTTCAGAAAAAATTT
*
95822303 ATTTTTCTGAAAAAATT
1 ATTTTTCAGAAAAAATT
95822320 ACACCATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (18 bp):
ATTTTTCAGAAAAAATTT
Found at i:95822628 original size:34 final size:34
Alignment explanation
Indices: 95822530--95822647 Score: 107
Period size: 34 Copynumber: 3.4 Consensus size: 34
95822520 TTAGAAAATA
* * *
95822530 TAAAATTAAAATATTTGAAATTATTTTAATATAATC
1 TAAAATAAAAAAATTT-AAA-TATTTTAATATAATT
* * **
95822566 TAATAT-AAAATATTT-AAT-TTCAAAATATAATT
1 TAAAATAAAAAAATTTAAATATT-TTAATATAATT
95822598 TAAAATAAAAAAATTTAAATATTTTAATATAATT
1 TAAAATAAAAAAATTTAAATATTTTAATATAATT
*
95822632 TAATATAAAAATAATT
1 TAAAATAAAAA-AATT
95822648 ATATTAAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
31 2 0.03
32 14 0.21
33 10 0.15
34 22 0.32
35 15 0.22
36 5 0.07
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (34 bp):
TAAAATAAAAAAATTTAAATATTTTAATATAATT
Done.