Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 310 of 410
Found at i:96189088 original size:54 final size:53
Alignment explanation
Indices: 96189025--96189130 Score: 131
Period size: 54 Copynumber: 2.0 Consensus size: 53
96189015 TCTGTTAAGT
* * * *
96189025 GGCTTTGCCACATTATCAGTTTCTGGTGGCTATGCCACAAATATCTATTCTGGA
1 GGCTCTGCCACAATATCAGTATCTGGTGACTATGCCAC-AATATCTATTCTGGA
* * * *
96189079 GGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCTGG
1 GGCTCTGCCACAATATCAGTATCTGGTGACTATGCCACAATATCTATTCTGG
96189131 TAGCCATGCT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
53 13 0.30
54 31 0.70
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (53 bp):
GGCTCTGCCACAATATCAGTATCTGGTGACTATGCCACAATATCTATTCTGGA
Found at i:96189257 original size:6 final size:6
Alignment explanation
Indices: 96189248--96189326 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
96189238 TTGCATTCAC
* * * *
96189248 ATTCTG ATTCTG ATTCTG -TCACCTA ATTATG ATTCTG ATTCTG CCA-CCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG --ATTCTG
* *
96189298 ATTCTG ATTCTG ATTCTT ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
96189327 AGTTCTAATA
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
5 2 0.04
6 46 0.84
7 5 0.09
8 2 0.04
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:96189280 original size:25 final size:25
Alignment explanation
Indices: 96189252--96189314 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
96189242 ATTCACATTC
*
96189252 TGATTCTGATTCTGTCACCTAATTA
1 TGATTCTGATTCTGCCACCTAATTA
* *
96189277 TGATTCTGATTCTGCCACCTGATTC
1 TGATTCTGATTCTGCCACCTAATTA
96189302 TGATTCTGATTCT
1 TGATTCTGATTCT
96189315 TATTTTGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (25 bp):
TGATTCTGATTCTGCCACCTAATTA
Found at i:96191388 original size:53 final size:53
Alignment explanation
Indices: 96191331--96191431 Score: 130
Period size: 53 Copynumber: 1.9 Consensus size: 53
96191321 AATACCCCAG
* * *
96191331 TTGTAAAATGACCAAAGTACCCCCGGTTTATAACATTACCGAAATACCGTCGA
1 TTGTAAAATGACCAAAATACCCCCGATTTATAAAATTACCGAAATACCGTCGA
* * * * *
96191384 TTGTAAAATTACTAAAATAGCCTCGATTTGTAAAATTACCGAAATACC
1 TTGTAAAATGACCAAAATACCCCCGATTTATAAAATTACCGAAATACC
96191432 CTTGTAGGGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 40 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.28
Consensus pattern (53 bp):
TTGTAAAATGACCAAAATACCCCCGATTTATAAAATTACCGAAATACCGTCGA
Found at i:96191394 original size:26 final size:26
Alignment explanation
Indices: 96191365--96191431 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
96191355 GGTTTATAAC
96191365 ATTACCGAAATACCGTCGA-TTGTAAA
1 ATTACCGAAATACC-TCGATTTGTAAA
**
96191391 ATTACTAAAATAGCCTCGATTTGTAAA
1 ATTACCGAAATA-CCTCGATTTGTAAA
96191418 ATTACCGAAATACC
1 ATTACCGAAATACC
96191432 CTTGTAGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 16 0.46
27 19 0.54
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (26 bp):
ATTACCGAAATACCTCGATTTGTAAA
Found at i:96191447 original size:27 final size:27
Alignment explanation
Indices: 96191417--96191529 Score: 172
Period size: 27 Copynumber: 4.2 Consensus size: 27
96191407 CGATTTGTAA
*
96191417 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
96191444 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
96191471 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
96191498 AATTATCGAGATACCCTTGAAGGGTAA
1 AATTATCGAAATACCCTTGTAGGGTAG
96191525 AATTA
1 AATTA
96191530 CCATTTTGCC
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:96191960 original size:22 final size:22
Alignment explanation
Indices: 96191935--96191983 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
96191925 ATGGTTTTGC
*
96191935 GCCAACCTACA-TATGGCTCTGT
1 GCCAACCTA-ATTATGGCTATGT
96191957 GCCAACCTAATTATGGCTATGT
1 GCCAACCTAATTATGGCTATGT
96191979 GCCAA
1 GCCAA
96191984 ACATATTTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (22 bp):
GCCAACCTAATTATGGCTATGT
Found at i:96192185 original size:27 final size:26
Alignment explanation
Indices: 96192155--96192241 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 26
96192145 CATTATCTAT
96192155 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
* * * *
96192182 TTCTGGAGGCTCTACCACAATATCTA
1 TTCTGGTGGCTATGCCACAATATCTG
* * * * *
96192208 TATCTAGTGACTCTGTCACAATATTTG
1 T-TCTGGTGGCTATGCCACAATATCTG
96192235 TTCTGGT
1 TTCTGGT
96192242 AGCCATGCTA
Statistics
Matches: 47, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
26 13 0.28
27 34 0.72
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:96192367 original size:6 final size:6
Alignment explanation
Indices: 96192358--96192470 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
96192348 TTGCATTCAC
* * *
96192358 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
96192408 ATTCTG ATTCTG ATTCTG CCA-CCTG ATTCTA ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG --ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
96192457 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
96192471 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 65 0.79
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:96192389 original size:25 final size:25
Alignment explanation
Indices: 96192358--96192449 Score: 139
Period size: 25 Copynumber: 3.7 Consensus size: 25
96192348 TTGCATTCAC
*
96192358 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
96192383 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
96192408 ATTCTGATTCTGATTCTGCCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
96192433 ATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCT
96192450 CATTTTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:96194253 original size:16 final size:16
Alignment explanation
Indices: 96194232--96194264 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
96194222 AAAAAATCAA
96194232 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
*
96194248 GATTTCGGGATTTTTG
1 GATTTCGAGATTTTTG
96194264 G
1 G
96194265 GGCATTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:96194486 original size:19 final size:19
Alignment explanation
Indices: 96194462--96194500 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
96194452 AGAACGACTT
96194462 CGGTCAAATGGAGCTGAGA
1 CGGTCAAATGGAGCTGAGA
96194481 CGGTCAAATGGAGCTGAGA
1 CGGTCAAATGGAGCTGAGA
96194500 C
1 C
96194501 TTTTAGAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.18, G:0.36, T:0.15
Consensus pattern (19 bp):
CGGTCAAATGGAGCTGAGA
Found at i:96197290 original size:27 final size:27
Alignment explanation
Indices: 96197260--96197311 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
96197250 GACCAAAATA
96197260 CCCCTAAAGGGTAAATTGACT-ATTTTG
1 CCCCTAAAGGGTAAA-TGACTGATTTTG
**
96197287 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAAAGGGTAAATGACTGATTT
96197312 GTTTGATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (27 bp):
CCCCTAAAGGGTAAATGACTGATTTTG
Found at i:96197645 original size:32 final size:32
Alignment explanation
Indices: 96197604--96197677 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
96197594 TTGAAACGGT
* *
96197604 CTAGGCCCAACAT-ATAATGGTTCTGATATGGG
1 CTAGGCCCAAC-TGATAATGATTCTGAGATGGG
*
96197636 CTAGGCCCAACTGATATTGATTCTGAGATGGG
1 CTAGGCCCAACTGATAATGATTCTGAGATGGG
96197668 CTAGGCCCAA
1 CTAGGCCCAA
96197678 TTAATATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 1 0.03
32 37 0.97
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (32 bp):
CTAGGCCCAACTGATAATGATTCTGAGATGGG
Found at i:96203613 original size:18 final size:18
Alignment explanation
Indices: 96203590--96203627 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
96203580 GTCTGTGTGC
96203590 TAGGCCGTGTAACTACCT
1 TAGGCCGTGTAACTACCT
96203608 TAGGCCGTGTAACTACCT
1 TAGGCCGTGTAACTACCT
96203626 TA
1 TA
96203628 CTTGAATGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (18 bp):
TAGGCCGTGTAACTACCT
Found at i:96203670 original size:38 final size:38
Alignment explanation
Indices: 96203619--96203696 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
96203609 AGGCCGTGTA
96203619 ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
1 ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
*
96203657 ACTACCTTACTTGAATGTCTTTAAAACCTATAAGGGAC
1 ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
96203695 AC
1 AC
96203697 ATGACTGAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (38 bp):
ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
Found at i:96205313 original size:40 final size:39
Alignment explanation
Indices: 96205222--96205372 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
96205212 ATAACCATGT
* *
96205222 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
96205262 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
96205302 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
96205342 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
96205373 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:96205356 original size:80 final size:80
Alignment explanation
Indices: 96205222--96205371 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
96205212 ATAACCATGT
*
96205222 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
96205286 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
96205302 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
96205365 CCCGGAT
64 CCCGGAT
96205372 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:96209022 original size:27 final size:27
Alignment explanation
Indices: 96208989--96209213 Score: 274
Period size: 27 Copynumber: 8.4 Consensus size: 27
96208979 GGATAAGTTA
*
96208989 TAGAATTAACGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
96209016 TAGAATTACTGAAATA-CCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* *
96209042 TATAATTACCAAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* *
96209069 TATAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
96209096 TAGAATTACTGAAATACCCCTGT-AGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * *
96209122 ATAGAATTATCGAAATACCCTTGTAGGG
1 -TAGAATTACCGAAATACCCCTGTAAGG
* *
96209150 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * **
96209177 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
96209204 TAAAATTACC
1 TAGAATTACC
96209214 ATTTTGCCCC
Statistics
Matches: 173, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.14
27 146 0.84
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAAGG
Found at i:96209906 original size:27 final size:27
Alignment explanation
Indices: 96209863--96209942 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
96209853 CCTCGCTATA
*
96209863 ATCTGGTGGCCTCGCCACATATATCTGT
1 ATCTGGTGGCCTAGCCACA-ATATCTGT
96209891 -TCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGGCCTAGCCACAATATCTGT
* * * *
96209917 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGGCCTAGCCACAATATCTG
96209943 GCAGCTTCGC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 8 0.17
27 38 0.83
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (27 bp):
ATCTGGTGGCCTAGCCACAATATCTGT
Found at i:96215284 original size:27 final size:27
Alignment explanation
Indices: 96215234--96215404 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
96215224 TGGATAAGTT
*
96215234 GTAGAATTACCG-AATACCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
96215260 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
96215287 GTAAAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
96215314 ATAGAATTGCTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
96215341 GTAGAAATACCGAAATA-CCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
96215367 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
96215394 GTAAAATTACC
1 GTAGAATTACC
96215405 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 34 0.27
27 90 0.73
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:96216128 original size:2 final size:2
Alignment explanation
Indices: 96216123--96216152 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
96216113 TTCGCCACAC
96216123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96216153 CTATTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96220548 original size:12 final size:12
Alignment explanation
Indices: 96220531--96220555 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96220521 TGGGTAAAGG
96220531 TTATGAATTGAT
1 TTATGAATTGAT
96220543 TTATGAATTGAT
1 TTATGAATTGAT
96220555 T
1 T
96220556 AAATGAAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TTATGAATTGAT
Found at i:96221945 original size:46 final size:46
Alignment explanation
Indices: 96221890--96222070 Score: 222
Period size: 46 Copynumber: 3.9 Consensus size: 46
96221880 TAGGATGGTT
96221890 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* *** * *
96221936 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC
*
96221982 TAGGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
96222029 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96222071 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
46 76 0.68
47 36 0.32
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:96222051 original size:93 final size:93
Alignment explanation
Indices: 96221892--96222062 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
96221882 GGATGGTTGA
* *
96221892 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96221957 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
96221985 GCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
96222049 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
96222063 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:96223879 original size:61 final size:61
Alignment explanation
Indices: 96223804--96223926 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
96223794 TTATTTGTAG
96223804 TCAGTGCACTGCACCTGGAGTACCGAGGGGAATGGTGATTTATTGCCTCTTTACTGGCAAC
1 TCAGTGCACTGCACCTGGAGTACCGAGGGGAATGGTGATTTATTGCCTCTTTACTGGCAAC
96223865 TCAGTGCACTGCACCTGGAGTACCGAGGGGAATGGTGATTTATTGCCTCTTTACTGGCAAC
1 TCAGTGCACTGCACCTGGAGTACCGAGGGGAATGGTGATTTATTGCCTCTTTACTGGCAAC
96223926 T
1 T
96223927 TTTCTATATT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (61 bp):
TCAGTGCACTGCACCTGGAGTACCGAGGGGAATGGTGATTTATTGCCTCTTTACTGGCAAC
Found at i:96233043 original size:38 final size:39
Alignment explanation
Indices: 96232973--96233050 Score: 140
Period size: 38 Copynumber: 2.0 Consensus size: 39
96232963 CTTGTTCTTA
96232973 AAAAAAGAAAAGAAAAGAAAAAAAAAACACAACTATGTAT
1 AAAAAAGAAAAGAAAAG-AAAAAAAAACACAACTATGTAT
96233013 AAAAAAGAAAAGAAAAG-AAAAAAAACACAACTATGTAT
1 AAAAAAGAAAAGAAAAGAAAAAAAAACACAACTATGTAT
96233051 GCATATCTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 21 0.55
40 17 0.45
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (39 bp):
AAAAAAGAAAAGAAAAGAAAAAAAAACACAACTATGTAT
Found at i:96236609 original size:25 final size:25
Alignment explanation
Indices: 96236559--96236676 Score: 89
Period size: 25 Copynumber: 4.8 Consensus size: 25
96236549 TCATTAGGGA
* *
96236559 TTACCGATTGT-AGTTCATGAGAGC
1 TTACCGATTCTCAGCTCATGAGAGC
*
96236583 TTACCGATTCTCAGCTCTTGAGAGC
1 TTACCGATTCTCAGCTCATGAGAGC
* *
96236608 TTACCGTTTCCCAGCTCAT-ATGAGC
1 TTACCGATTCTCAGCTCATGA-GAGC
** *
96236633 TTATTGATT-TCAAGCCCATGAGAGC
1 TTACCGATTCTC-AGCTCATGAGAGC
* * **
96236658 ATACCAATTAACAGCTCAT
1 TTACCGATTCTCAGCTCAT
96236677 ATGAGCATAC
Statistics
Matches: 72, Mismatches: 17, Indels: 9
0.73 0.17 0.09
Matches are distributed among these distances:
24 12 0.17
25 58 0.81
26 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (25 bp):
TTACCGATTCTCAGCTCATGAGAGC
Found at i:96236861 original size:25 final size:25
Alignment explanation
Indices: 96236824--96236871 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
96236814 TTACAGGTAT
96236824 TTACATGAAATATATGAAA-ATGACA
1 TTACATGAAATAT-TGAAACATGACA
*
96236849 TTACATGATATATTGAAACATGA
1 TTACATGAAATATTGAAACATGA
96236872 AATGGATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.31
Consensus pattern (25 bp):
TTACATGAAATATTGAAACATGACA
Found at i:96245149 original size:48 final size:48
Alignment explanation
Indices: 96245078--96245173 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
96245068 TGACACGGAG
96245078 TATGAGTTCACCTGTGCCAACATCAATGATCGTTTTAGCAGTTGCTAA
1 TATGAGTTCACCTGTGCCAACATCAATGATCGTTTTAGCAGTTGCTAA
96245126 TATGAGTTCACCTGTGCCAACATCAATGATCGTTTTAGCAGTTGCTAA
1 TATGAGTTCACCTGTGCCAACATCAATGATCGTTTTAGCAGTTGCTAA
96245174 AAAAGGCCTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (48 bp):
TATGAGTTCACCTGTGCCAACATCAATGATCGTTTTAGCAGTTGCTAA
Found at i:96250051 original size:53 final size:54
Alignment explanation
Indices: 96249951--96250157 Score: 188
Period size: 53 Copynumber: 3.8 Consensus size: 54
96249941 TTCCTTTTTA
* * *
96249951 AACTTACCATTGCCATGTCTTGACATGGTGTT--ATGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-TGG-ATCCTTGCCTTATAG
* * * * *
96250004 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATTGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATTGGATCCTTGCCTTATAG
** * * *** * *
96250058 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATTATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATTGGATCCTTGCCTTATAG
*
96250113 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC-TTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATTGG-ATCCTT
96250158 AAATCCTAAT
Statistics
Matches: 122, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
53 42 0.34
54 38 0.31
55 42 0.34
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATTGGATCCTTGCCTTATAG
Found at i:96262391 original size:29 final size:29
Alignment explanation
Indices: 96262318--96262391 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
96262308 GTGACGAGAT
*
96262318 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATGTA
*
96262347 TGACACTAAGTGTGCGAGCTT-AAAT-TACA
1 TGGCACTAAGTGTGCGAGCTTGAAATGT--A
96262376 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96262392 TGATCGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
27 1 0.03
28 4 0.10
29 35 0.88
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGTA
Found at i:96266335 original size:25 final size:23
Alignment explanation
Indices: 96266298--96266354 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 23
96266288 TTTTCTCCTA
*
96266298 AATTTTTATTTTATTCAATTATCT
1 AATTTTTAATTTATTCAATTAT-T
*
96266322 AATTTTTCAATTTATTGAATTATT
1 AATTTTT-AATTTATTCAATTATT
96266346 AATATTTTA
1 AAT-TTTTA
96266355 TATTAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 12 0.41
25 17 0.59
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (23 bp):
AATTTTTAATTTATTCAATTATT
Found at i:96270084 original size:34 final size:34
Alignment explanation
Indices: 96270004--96270099 Score: 104
Period size: 34 Copynumber: 2.8 Consensus size: 34
96269994 TATGTTTACA
*
96270004 TACTG-TACTAAAATGGGCTAAGGCCCAGACTGC
1 TACTGATACTGAAATGGGCTAAGGCCCAGACTGC
* * *
96270037 TACTGATATTGAAATGGGCTCAGGCCCAGACTGT
1 TACTGATACTGAAATGGGCTAAGGCCCAGACTGC
* * *
96270071 TATTGCTACTGAAAGAGGGGCTAAGGCCC
1 TACTGATACTG-AA-ATGGGCTAAGGCCC
96270100 CTAACTGAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
33 5 0.10
34 32 0.63
35 2 0.04
36 12 0.24
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (34 bp):
TACTGATACTGAAATGGGCTAAGGCCCAGACTGC
Found at i:96271515 original size:16 final size:16
Alignment explanation
Indices: 96271494--96271525 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
96271484 ATTGTAACGC
*
96271494 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
96271510 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
96271526 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:96275363 original size:24 final size:24
Alignment explanation
Indices: 96275322--96275393 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
96275312 GCTTTATCAT
**
96275322 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
*
96275347 ATAACT-GAGGCAAAGCCCTTTTTG
1 ATAACTGGAGGCAAAGCCC-TTTTA
*
96275371 GTAAACTGGA-GCAAAGCCCTTTT
1 AT-AACTGGAGGCAAAGCCCTTTT
96275394 CGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.03
24 18 0.45
25 19 0.47
26 2 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:96275468 original size:21 final size:21
Alignment explanation
Indices: 96275441--96275501 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
96275431 TATAATGAGT
96275441 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
96275462 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
96275483 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
96275502 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:96275500 original size:10 final size:10
Alignment explanation
Indices: 96275441--96275501 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
96275431 TATAATGAGT
96275441 ATATCATAG-C
1 ATATCAT-GTC
96275451 ATATCATGTGC
1 ATATCATGT-C
* **
96275462 ATCTCATAAC
1 ATATCATGTC
96275472 ATATCATGTGC
1 ATATCATGT-C
96275483 ATATCATGTC
1 ATATCATGTC
96275493 ATATCATGT
1 ATATCATGT
96275502 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:96275573 original size:25 final size:26
Alignment explanation
Indices: 96275538--96275587 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
96275528 ATAATTAAAC
* * *
96275538 CCTATAGGGTATAATGGTTATTTTTA
1 CCTATAGGGTAAAATAGTCATTTTTA
96275564 CCTA-AGGGTAAAATAGTCATTTTT
1 CCTATAGGGTAAAATAGTCATTTTT
96275588 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (26 bp):
CCTATAGGGTAAAATAGTCATTTTTA
Found at i:96289544 original size:43 final size:43
Alignment explanation
Indices: 96289481--96289789 Score: 564
Period size: 43 Copynumber: 7.2 Consensus size: 43
96289471 GGTTAAATCC
* *
96289481 AGCAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCTT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
96289524 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
96289567 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
*
96289610 AGCAGGCTTCGTGCGGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
96289653 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
*
96289696 AGCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
* *
96289739 AGCAGGCTTCGTGCTGGTGATGTGTACTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
96289782 AGCAGGCT
1 AGCAGGCT
96289790 ATGATGCCAG
Statistics
Matches: 260, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 260 1.00
ACGTcount: A:0.10, C:0.25, G:0.35, T:0.30
Consensus pattern (43 bp):
AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
Found at i:96291279 original size:29 final size:29
Alignment explanation
Indices: 96291247--96291407 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
96291237 AATTTAAGCC
* *** *
96291247 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
** * *
96291276 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
* * * *
96291305 TGCACACATAGTGTCATATTTTTCCAGCAT
1 CGCACACTTAGTGCCATATATTTCCAGC-T
*
96291335 -GCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
*
96291363 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
96291392 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
96291408 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
29 113 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCT
Found at i:96292908 original size:45 final size:43
Alignment explanation
Indices: 96292841--96292941 Score: 123
Period size: 45 Copynumber: 2.3 Consensus size: 43
96292831 GATGTCACAT
* * * *
96292841 GAGCCTAGCAGGGTATAATGCCGGTGAGAT-ACTATTCGGGCTTTC
1 GAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCAGGC-CTC
*
96292886 GAGCCTAGCAGGCTATAGTGCCGGTGAAATGATATCAGGCCTC
1 GAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCAGGCCTC
96292929 GAGCCTAGCAGGC
1 GAGCCTAGCAGGC
96292942 GAAATACCGG
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 15 0.30
44 5 0.10
45 29 0.58
46 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (43 bp):
GAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCAGGCCTC
Found at i:96298270 original size:43 final size:43
Alignment explanation
Indices: 96298209--96298579 Score: 422
Period size: 43 Copynumber: 8.5 Consensus size: 43
96298199 CGGGTCAAAT
*
96298209 CTAGCAGGCTTCGTGCCGGTGATGTGTAATCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* **
96298252 CTAGCAGGCTTCATGCCGGTGATGTGTATTTAGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* *
96298295 CTAGCAGGTTTTGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* *
96298338 TTAGCAGGCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
*
96298381 CTAGTAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* * * * *
96298424 CTAGTAAGATTCGTGCTGGTGATGTGTGTTCGGGCCTTCGTGC
1 CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
* ** * * *
96298467 CTAGCAGGCTAT-GATGTCGGTGAAATACTATTCGGGCCTTTGAGC
1 CTAGCAGGCT-TCG-TGCCGGTGATGT-GTATTCGGGCCTTCGTGC
** * * * *
96298512 CTAGCAGGCTATAATGCCGGTGA-GATACTATTCAGGCTTTCATGC
1 CTAGCAGGCT-TCGTGCCGGTGATG-T-GTATTCGGGCCTTCGTGC
*
96298557 CTAGCAGGCTATAGTGCCGGTGA
1 CTAGCAGGCT-TCGTGCCGGTGA
96298580 AATGATATCG
Statistics
Matches: 283, Mismatches: 40, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
43 203 0.72
44 9 0.03
45 71 0.25
ACGTcount: A:0.15, C:0.22, G:0.32, T:0.31
Consensus pattern (43 bp):
CTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGC
Found at i:96302189 original size:48 final size:48
Alignment explanation
Indices: 96302121--96302679 Score: 895
Period size: 48 Copynumber: 11.7 Consensus size: 48
96302111 TGAAAGTGTT
** *
96302121 TATATGTCATAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
96302169 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
96302217 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
96302265 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
96302313 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
96302361 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
96302409 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* *
96302457 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
96302505 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
* * *
96302553 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-TTATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
** * ** *
96302600 TATATGTCTTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
*
96302648 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
96302680 TGTTGTAACA
Statistics
Matches: 480, Mismatches: 30, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
47 41 0.09
48 439 0.91
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATATG
Found at i:96302776 original size:37 final size:37
Alignment explanation
Indices: 96302724--96302846 Score: 219
Period size: 37 Copynumber: 3.3 Consensus size: 37
96302714 GGAAATATAT
* *
96302724 TCCGGGTGAGGCCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96302761 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96302798 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96302835 TCCGGGTAAGAC
1 TCCGGGTAAGAC
96302847 TTCGTAATAA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.22, C:0.20, G:0.35, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96304788 original size:40 final size:40
Alignment explanation
Indices: 96304721--96305025 Score: 419
Period size: 40 Copynumber: 7.8 Consensus size: 40
96304711 GAGAATTGAG
* * *
96304721 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
*
96304761 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
96304801 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
96304841 AGTGATGTATCCGAACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
96304881 AGTGATGTATCCGGACTAAGTTCCGGAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
96304921 AG-GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
96304960 AGTAATGCAACCGGACTAAG-TCC--CGA--A-TCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
96304994 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
96305026 ATCATGCTGG
Statistics
Matches: 236, Mismatches: 22, Indels: 15
0.86 0.08 0.05
Matches are distributed among these distances:
34 22 0.09
35 3 0.01
37 4 0.02
39 44 0.19
40 163 0.69
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:96304996 original size:34 final size:34
Alignment explanation
Indices: 96304953--96305020 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
96304943 CGAAGAGCAT
96304953 TCGTGCTAGTAATGCAACCGGACTAAGTCCCGAA
1 TCGTGCTAGTAATGCAACCGGACTAAGTCCCGAA
* * * * *
96304987 TCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAA
1 TCGTGCTAGTAATGCAACCGGACTAAGTCCCGAA
96305021 GAGCAATCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (34 bp):
TCGTGCTAGTAATGCAACCGGACTAAGTCCCGAA
Found at i:96308927 original size:48 final size:48
Alignment explanation
Indices: 96308858--96309321 Score: 739
Period size: 48 Copynumber: 9.7 Consensus size: 48
96308848 TGAAAGTGTT
** * * *
96308858 TATATGTCATAAAGCTGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
96308906 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
96308954 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
96309002 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
96309050 TATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
96309098 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
96309146 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
96309194 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
** * * *
96309242 TATATGTCTTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
96309290 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
96309322 TGTTGTAACA
Statistics
Matches: 386, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 386 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
Found at i:96309416 original size:37 final size:37
Alignment explanation
Indices: 96309366--96309488 Score: 219
Period size: 37 Copynumber: 3.3 Consensus size: 37
96309356 GGAAATATAT
*
96309366 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96309403 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96309440 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96309477 TCCGGGTAAGAC
1 TCCGGGTAAGAC
96309489 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96317183 original size:46 final size:46
Alignment explanation
Indices: 96317130--96317305 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
96317120 TATTTGGGCA
96317130 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
96317176 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
96317223 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
96317269 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96317306 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:96317285 original size:93 final size:93
Alignment explanation
Indices: 96317126--96317297 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
96317116 GGGATATTTG
* *
96317126 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
96317191 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
96317219 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
96317284 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
96317298 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:96323155 original size:2 final size:2
Alignment explanation
Indices: 96323148--96323187 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
96323138 TCATTTCAGC
96323148 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96323188 TACATTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96331728 original size:4 final size:4
Alignment explanation
Indices: 96331719--96331744 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
96331709 ATCGCTATAA
96331719 ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT AT
96331745 TATTATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:96337647 original size:49 final size:49
Alignment explanation
Indices: 96337579--96337706 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
96337569 TATGTGTCAG
* *
96337579 TGTAAGACTTGTCTTGGACATGGCATCGACAC-CGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTTGGACATGGCATCGAC-CTCGATAGATGAAAGCCAA
* * * * *
96337628 TGTAAGACCTGCCTAGGACATGGCATCAACCTCGATATATGAAAGCCAG
1 TGTAAGACCTGTCTTGGACATGGCATCGACCTCGATAGATGAAAGCCAA
*
96337677 TGTAAGACCTATCTTGGACATGGCATCGAC
1 TGTAAGACCTGTCTTGGACATGGCATCGAC
96337707 TTTGATGTGT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
48 1 0.01
49 66 0.99
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTTGGACATGGCATCGACCTCGATAGATGAAAGCCAA
Found at i:96350326 original size:39 final size:39
Alignment explanation
Indices: 96350283--96350431 Score: 246
Period size: 39 Copynumber: 3.8 Consensus size: 39
96350273 TATGGTAGCC
*
96350283 CGCACAA-TGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
96350322 CGCACAATTGCCTTCAGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
96350361 CGCACAATTGCCTTCGGGCTTAGCCTGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
96350400 TGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
96350432 TACCCGAACA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 94 0.91
40 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:96356785 original size:46 final size:48
Alignment explanation
Indices: 96356619--96356832 Score: 147
Period size: 46 Copynumber: 4.6 Consensus size: 48
96356609 TGATATGTGT
* * *
96356619 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCCA-C-A-TTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCAT-AGGCATCGAGATA-GACGA
* * * * * ***
96356665 GCCATTTTAAGACATGTCTAGGACATGCATCGGTC-TCGAGATATTTGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGG-CATCGAGATAGACGA
* * * * *
96356713 GCCAGTGTGAGA-ATGTTTGGGACATGCATAGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGGCATCGAGATAGACGA
* * * *
96356758 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGGCATCGAGATAGACGA
* *
96356806 GATAGTGTAAGACTTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
96356833 GCATCAGCTT
Statistics
Matches: 128, Mismatches: 31, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
45 13 0.10
46 52 0.41
47 24 0.19
48 39 0.30
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATAGGCATCGAGATAGACGA
Found at i:96356957 original size:49 final size:48
Alignment explanation
Indices: 96356761--96356970 Score: 161
Period size: 49 Copynumber: 4.4 Consensus size: 48
96356751 GACGAGAGCT
* ** * *
96356761 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGA-GATATACAAGAT-
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGATG-TAT-GAAG-TC
* *
96356809 AGTGTAAGACTTGTCTGGGACATGGCATCAG-CTTG-T-TATG-TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGATGTATGAAGTC
* *
96356853 AGTGTAAGACCTGTCTGGGACATGGCATC-GACAC-CGATAG-ATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-C-CTTGAT-GTATGA-AGTC
* * *
96356902 AATGTAAGACCTGTCTAGGACATGGCATCAGCCTTGATGTGTGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGATGTATG-AAGTC
*
96356951 AGTGTAAGACCTCTCTGGGA
1 AGTGTAAGACCTGTCTGGGA
96356971 TGTGTCATCG
Statistics
Matches: 129, Mismatches: 18, Indels: 29
0.73 0.10 0.16
Matches are distributed among these distances:
43 2 0.02
44 29 0.22
45 1 0.01
46 5 0.04
47 3 0.02
48 27 0.21
49 60 0.47
50 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGATGTATGAAGTC
Found at i:96360327 original size:48 final size:48
Alignment explanation
Indices: 96360256--96360369 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
96360246 CAAGATAAAT
* *
96360256 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATG
*
96360304 AGATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATG
1 AGATATATATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATG
96360352 AGATATATATATATGGTA
1 AGATATATATATATGGTA
96360370 TATATGAGAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.32
Consensus pattern (48 bp):
AGATATATATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATG
Found at i:96360348 original size:37 final size:37
Alignment explanation
Indices: 96360300--96360422 Score: 112
Period size: 37 Copynumber: 3.4 Consensus size: 37
96360290 GTGAAATATG
*
96360300 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAA
1 TATGAAATATGTATATATGGTAAAGCCGAATGGCTAA
* * * *
96360337 TATGAAATATGTATGAGAT-ATATA---TATATGG-TATA
1 TATGAAATATGTAT-ATATGGTAAAGCCGA-ATGGCTA-A
* *
96360372 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
1 TATGAAATATGTATATATGGTAAAGCCGAATGGCTAA
*
96360409 CATGAAATATGTAT
1 TATGAAATATGTAT
96360423 GAGATATATA
Statistics
Matches: 65, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
34 5 0.08
35 21 0.32
37 33 0.51
38 6 0.09
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (37 bp):
TATGAAATATGTATATATGGTAAAGCCGAATGGCTAA
Found at i:96360375 original size:24 final size:24
Alignment explanation
Indices: 96360348--96360393 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
96360338 ATGAAATATG
96360348 TATGAGATATATATATATGGTATA
1 TATGAGATATATATATATGGTATA
* *
96360372 TATGAGATATGTATATGTGGTA
1 TATGAGATATATATATATGGTA
96360394 AAGCCGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (24 bp):
TATGAGATATATATATATGGTATA
Found at i:96360386 original size:72 final size:72
Alignment explanation
Indices: 96360300--96360441 Score: 257
Period size: 72 Copynumber: 2.0 Consensus size: 72
96360290 GTGAAATATG
*
96360300 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATA
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
96360365 TGGTATA
66 TGGTATA
* *
96360372 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATG
1 TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
96360437 TGGTA
66 TGGTA
96360442 AATCCGAATG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.34
Consensus pattern (72 bp):
TATGAGATATGTATATATGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
TGGTATA
Found at i:96360403 original size:120 final size:120
Alignment explanation
Indices: 96360256--96360489 Score: 387
Period size: 120 Copynumber: 1.9 Consensus size: 120
96360246 CAAGATAAAT
** *
96360256 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
96360321 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATATGGTATATATG
66 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATATGGTATATATG
* *
96360376 AGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATGTGGT
1 AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
* * * *
96360441 AAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTA
66 AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATATGGTA
96360490 AAGCCGGATG
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 105 1.00
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (120 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATATGGT
AAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATATGGTATATATG
Found at i:96360424 original size:48 final size:48
Alignment explanation
Indices: 96360372--96360523 Score: 241
Period size: 48 Copynumber: 3.2 Consensus size: 48
96360362 ATATGGTATA
**
96360372 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
96360420 TATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
96360468 TATGAGATATGTATATTTGGTAAAGCCGGATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
96360516 TAGGAGAT
1 TATGAGAT
96360524 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:96360762 original size:37 final size:37
Alignment explanation
Indices: 96360664--96360839 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
96360654 GGAAATATAT
96360664 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96360701 TTCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96360737 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
96360774 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96360811 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
96360840 GGACTATTCG
Statistics
Matches: 132, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
36 35 0.27
37 97 0.73
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96364033 original size:27 final size:28
Alignment explanation
Indices: 96363973--96364045 Score: 112
Period size: 27 Copynumber: 2.6 Consensus size: 28
96363963 TTAAAATTTG
* **
96363973 TATAGCACTAAATGTGCGAATTTGATTA
1 TATAGCACTAAGTGTGCGAAGCTGATTA
96364001 TATAGCACTAAGTGTGCG-AGCTGATTA
1 TATAGCACTAAGTGTGCGAAGCTGATTA
96364028 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
96364046 GACTCACTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAAGCTGATTA
Found at i:96364056 original size:27 final size:27
Alignment explanation
Indices: 96363999--96364057 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
96363989 CGAATTTGAT
* *
96363999 TATATAGCACTAAGTGTGCGAGCTGAT
1 TATATAGCACTAAGTGTGCGAGCTCAC
96364026 TATATAGCACTAAGTGTGCG-GACTCAC
1 TATATAGCACTAAGTGTGCGAG-CTCAC
96364053 TATAT
1 TATAT
96364058 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (27 bp):
TATATAGCACTAAGTGTGCGAGCTCAC
Found at i:96372143 original size:27 final size:27
Alignment explanation
Indices: 96372086--96372144 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
96372076 CGAATTTGAT
* *
96372086 TATATAGCACTAAGTGTGCGAGCTGAT
1 TATATAGCACTAAGTGTGCGAGCTCAC
96372113 TATATAGCACTAAGTGTGCG-GACTCAC
1 TATATAGCACTAAGTGTGCGAG-CTCAC
96372140 TATAT
1 TATAT
96372145 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (27 bp):
TATATAGCACTAAGTGTGCGAGCTCAC
Found at i:96375971 original size:28 final size:28
Alignment explanation
Indices: 96375939--96376008 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
96375929 TATGGTACTC
*
96375939 AGTGTACGAAATATTGAGAAT-AGCACTT
1 AGTGTGCGAAATATTGAGAATGA-CACTT
*
96375967 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
96375995 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
96376009 CAAATGATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:96381098 original size:56 final size:56
Alignment explanation
Indices: 96381012--96381127 Score: 205
Period size: 56 Copynumber: 2.1 Consensus size: 56
96381002 TATTCTATCT
*
96381012 CATATAACATATTCATACGAATTCCTCAAGCTTCATACACATAGTATCATCTACCA
1 CATATAACATATTCATACAAATTCCTCAAGCTTCATACACATAGTATCATCTACCA
**
96381068 CATATAACATATTCATACAAATTTTTCAAGCTTCATACACATAGTATCATCTACCA
1 CATATAACATATTCATACAAATTCCTCAAGCTTCATACACATAGTATCATCTACCA
96381124 CATA
1 CATA
96381128 GGTACCAAAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (56 bp):
CATATAACATATTCATACAAATTCCTCAAGCTTCATACACATAGTATCATCTACCA
Found at i:96386515 original size:26 final size:26
Alignment explanation
Indices: 96386484--96386552 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
96386474 ACCAATCTCA
*
96386484 CAGCAAAGCTGCCAGTAATAAT-ATCG
1 CAGCAAAGCTGCCAGTAACAATAAT-G
* * *
96386510 CTGCAAAACTGCCAGTAACAGTAATG
1 CAGCAAAGCTGCCAGTAACAATAATG
96386536 CAGCAAAGCTGCCAGTA
1 CAGCAAAGCTGCCAGTA
96386553 TCAGTATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 34 0.94
27 2 0.06
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAATAATG
Found at i:96386557 original size:26 final size:27
Alignment explanation
Indices: 96386484--96386571 Score: 85
Period size: 26 Copynumber: 3.3 Consensus size: 27
96386474 ACCAATCTCA
*
96386484 CAGCAAAGCTGCCAGTAAT-AAT-ATCG
1 CAGCAAAGCTGCCAGT-ATCAGTAATCG
* * *
96386510 CTGCAAAACTGCCAGTAACAGTAAT-G
1 CAGCAAAGCTGCCAGTATCAGTAATCG
*
96386536 CAGCAAAGCTGCCAGTATCAGTATATGG
1 CAGCAAAGCTGCCAGTATCAGTA-ATCG
96386564 CA-CAAAGC
1 CAGCAAAGC
96386572 CGTGAGTAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 1 0.02
26 37 0.73
27 10 0.20
28 3 0.06
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (27 bp):
CAGCAAAGCTGCCAGTATCAGTAATCG
Found at i:96386586 original size:20 final size:20
Alignment explanation
Indices: 96386561--96386738 Score: 171
Period size: 20 Copynumber: 8.9 Consensus size: 20
96386551 TATCAGTATA
* * *
96386561 TGGCACAAAGCCGTGAGTAG
1 TGGCACAAAGCCATCAATAG
* *
96386581 TGGCACGAAGCCATCAGTAG
1 TGGCACAAAGCCATCAATAG
** *
96386601 CAGCACAAAACCATCAATAG
1 TGGCACAAAGCCATCAATAG
* *
96386621 CGGCACAAAACCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
96386641 TGGCACAAAGCCATCAGTAG
1 TGGCACAAAGCCATCAATAG
** *
96386661 TGGTTCAAAACCATCAATAG
1 TGGCACAAAGCCATCAATAG
96386681 TGGCACAAAGCCATCAAT--
1 TGGCACAAAGCCATCAATAG
*
96386699 TGGATACAAAGCCATCAATAG
1 TGG-CACAAAGCCATCAATAG
* * *
96386720 TGGTATAAAGCCATAAATA
1 TGGCACAAAGCCATCAATA
96386739 TCTCAGCATT
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
18 3 0.02
19 14 0.11
20 113 0.85
21 3 0.02
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (20 bp):
TGGCACAAAGCCATCAATAG
Found at i:96388562 original size:12 final size:12
Alignment explanation
Indices: 96388541--96388572 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
96388531 CCACAATTTC
*
96388541 CTCCTAAAATCT
1 CTCCTCAAATCT
96388553 CTCCTCAAATCT
1 CTCCTCAAATCT
96388565 CTCCTCAA
1 CTCCTCAA
96388573 CTCCCTCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.41, G:0.00, T:0.31
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:96390836 original size:56 final size:56
Alignment explanation
Indices: 96390771--96390963 Score: 260
Period size: 56 Copynumber: 3.4 Consensus size: 56
96390761 TCCCAGACAG
* * * * * **
96390771 GGTCGTACTCGCACACATATATTGGAGTCACATATTGATGCCAATATATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCTAACGTATAAAACGT
* * *
96390827 GGTCTTACTCGCACACATATATCAAAGTCACATATCAATGCTAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCTAACGTATAAAACGT
**
96390883 GGTCTTACTCATACACATATATCGAAGTCACATATCGATGCTAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCTAACGTATAAAACGT
* *
96390939 GGTCCTACTCGCACAGATATATCGA
1 GGTCTTACTCGCACACATATATCGA
96390964 TGCCATGGTC
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCTAACGTATAAAACGT
Found at i:96396026 original size:18 final size:19
Alignment explanation
Indices: 96396003--96396039 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
96395993 CACATCTTTA
96396003 CTCTCTTCTCT-CCATTTT
1 CTCTCTTCTCTGCCATTTT
*
96396021 CTCTCTTCTTTGCCATTTT
1 CTCTCTTCTCTGCCATTTT
96396040 AAATTCTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.05, C:0.35, G:0.03, T:0.57
Consensus pattern (19 bp):
CTCTCTTCTCTGCCATTTT
Found at i:96402435 original size:48 final size:49
Alignment explanation
Indices: 96402360--96402506 Score: 219
Period size: 48 Copynumber: 3.1 Consensus size: 49
96402350 ACTCGGGAGT
*
96402360 CTCG-CACCCTAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
1 CTCGACACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
* * * *
96402408 CTC-ACACCCAAAGTTCCAATATCATGGCCCAAAGGCAAATCAATGTAC
1 CTCGACACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
*
96402456 CTCGA-ACCTAAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
1 CTCGACACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
96402504 CTC
1 CTC
96402507 CTAATGACAT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
48 86 0.99
49 1 0.01
ACGTcount: A:0.35, C:0.31, G:0.15, T:0.19
Consensus pattern (49 bp):
CTCGACACCCAAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:96403081 original size:21 final size:20
Alignment explanation
Indices: 96403051--96403089 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
96403041 GAAAACTTGT
96403051 ATAACTATCATCAAACATTA
1 ATAACTATCATCAAACATTA
*
96403071 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
96403090 CAAAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTA
Found at i:96414255 original size:28 final size:28
Alignment explanation
Indices: 96414224--96414310 Score: 174
Period size: 28 Copynumber: 3.1 Consensus size: 28
96414214 TAGGAGTATA
96414224 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
96414252 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
96414280 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
96414308 TCG
1 TCG
96414311 TGATCTACGC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.17, C:0.11, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:96422397 original size:27 final size:28
Alignment explanation
Indices: 96422351--96422435 Score: 156
Period size: 27 Copynumber: 3.1 Consensus size: 28
96422341 CTAGGGTATA
96422351 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
96422379 TCGGTAATTTTGCTC-TTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
96422406 TCGGTAA-TTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
96422433 TCG
1 TCG
96422436 TGATCTACGC
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
26 7 0.12
27 34 0.61
28 15 0.27
ACGTcount: A:0.18, C:0.12, G:0.26, T:0.45
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:96425840 original size:66 final size:68
Alignment explanation
Indices: 96425764--96425950 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
96425754 TAGTACCACT
*
96425764 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
96425826 CACG
65 CACG
96425830 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
96425895 ATCACG
63 ATCACG
96425901 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
96425951 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:96425875 original size:71 final size:71
Alignment explanation
Indices: 96425787--96425950 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
96425777 CGATTTGTCT
96425787 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
96425852 CTTTCA
66 CTTTCA
96425858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
96425923 CTTTCA
66 CTTTCA
96425929 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
96425951 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:96425988 original size:71 final size:70
Alignment explanation
Indices: 96425787--96425984 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
96425777 CGATTTGTCT
* * *
96425787 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
96425852 CTTTCA
65 CTTTCA
* * *
96425858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
96425923 CTTTCA
65 CTTTCA
* *
96425929 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
96425985 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:96433409 original size:66 final size:68
Alignment explanation
Indices: 96433333--96433519 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
96433323 TAGTACCACT
*
96433333 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
96433395 CACG
65 CACG
96433399 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
96433464 ATCACG
63 ATCACG
96433470 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
96433520 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:96433444 original size:71 final size:71
Alignment explanation
Indices: 96433356--96433519 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
96433346 CGATTTGTCT
96433356 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
96433421 CTTTCA
66 CTTTCA
96433427 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
96433492 CTTTCA
66 CTTTCA
96433498 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
96433520 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:96433557 original size:71 final size:70
Alignment explanation
Indices: 96433356--96433553 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
96433346 CGATTTGTCT
* * *
96433356 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
96433421 CTTTCA
65 CTTTCA
* * *
96433427 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
96433492 CTTTCA
65 CTTTCA
* *
96433498 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
96433554 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:96438010 original size:125 final size:123
Alignment explanation
Indices: 96437775--96438010 Score: 323
Period size: 125 Copynumber: 1.9 Consensus size: 123
96437765 GAATTATGTG
* * * *
96437775 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTATGAGCAATTGAATGATACCCGG
* * * ** *
96437840 GCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAATGA
66 GCTAAGTCCCGAAGACGATTATGCTAGTAATATATCCGTGGTTGAGCCTTAGTAATGA
*
96437898 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTGCATGAGCAATTGAATGATATCC
1 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGT--ATGAGCAATTGAATGATACCC
96437963 GGGCTAAGTCCCGAAGAC-ATTTATGCTAGTAATTATATCCG-GGTTGAG
64 GGGCTAAGTCCCGAAGACGA-TTATGCTAGTAA-TATATCCGTGGTTGAG
96438011 ACCCGAAGGA
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
123 40 0.41
124 1 0.01
125 52 0.53
126 5 0.05
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGTAATATATCCGTGGTTGAGCCTTAGTAATGA
Found at i:96438148 original size:40 final size:39
Alignment explanation
Indices: 96437957--96438163 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
96437947 CAATTGAATG
* * ** * *
96437957 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
96437997 ATATCCGGGTTGAGACCCGAAGGAATT-GTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTG-TT
*
96438036 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
96438076 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
96438116 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
96438156 ATATCCGG
1 ATATCCGG
96438164 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 32 0.23
40 105 0.76
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:96457326 original size:12 final size:12
Alignment explanation
Indices: 96457309--96457335 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
96457299 CGGAGTGGAA
96457309 GAGGCTACTTGG
1 GAGGCTACTTGG
96457321 GAGGCTACTTGG
1 GAGGCTACTTGG
96457333 GAG
1 GAG
96457336 CCTGAGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.44, T:0.22
Consensus pattern (12 bp):
GAGGCTACTTGG
Found at i:96460981 original size:42 final size:42
Alignment explanation
Indices: 96460931--96461044 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 42
96460921 CTTCATTTTC
** *
96460931 TCGATGCCATAGGTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
* *
96460974 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
* * *
96461015 TCGATGCCATAGCCTAGCTATGGTTTTACA
1 TCGATGCCATAGCCCAACTATGGTCTTACA
96461045 TGAATCACAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.03
42 60 0.95
43 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:96461156 original size:7 final size:7
Alignment explanation
Indices: 96461144--96461172 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
96461134 TATACGGAAA
96461144 TCACTTG
1 TCACTTG
96461151 TCACTTG
1 TCACTTG
96461158 TCACTTG
1 TCACTTG
96461165 TCACTTG
1 TCACTTG
96461172 T
1 T
96461173 AGCCGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:96461206 original size:31 final size:31
Alignment explanation
Indices: 96461171--96461350 Score: 254
Period size: 31 Copynumber: 5.8 Consensus size: 31
96461161 CTTGTCACTT
*
96461171 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
96461202 GTAGCTGGAGCTACCATTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
96461233 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
96461264 GTAACCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
**
96461295 GTAGTAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
96461326 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
96461351 TGTCATTTGT
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 3 0.02
31 127 0.96
32 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:96463506 original size:29 final size:28
Alignment explanation
Indices: 96463473--96463575 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
96463463 GTGACGAGAT
* *
96463473 TGGCACTAAGTGTGCAAGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCT-CAAATATA
* * *
96463502 TGGCACTGAGTGTGCGAGTTCAAATTGTA
1 TGGCACTAAGTGTGCGAGCTCAAA-TATA
* * * *
96463531 TGGCACTATGTGTGCGGGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTCAAAT-ATA
96463560 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
96463576 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 4 0.07
29 55 0.93
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTCAAATATA
Found at i:96466592 original size:14 final size:14
Alignment explanation
Indices: 96466573--96466602 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
96466563 AAAGATCCAG
96466573 ACATTCTGAAAACT
1 ACATTCTGAAAACT
96466587 ACATTCTGAAAACT
1 ACATTCTGAAAACT
96466601 AC
1 AC
96466603 TTTCCGAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (14 bp):
ACATTCTGAAAACT
Found at i:96472322 original size:14 final size:14
Alignment explanation
Indices: 96472303--96472329 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96472293 CAAAACTACG
96472303 CCAGAACAACCTTT
1 CCAGAACAACCTTT
96472317 CCAGAACAACCTT
1 CCAGAACAACCTT
96472330 AAGTTGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.37, G:0.07, T:0.19
Consensus pattern (14 bp):
CCAGAACAACCTTT
Found at i:96473019 original size:13 final size:13
Alignment explanation
Indices: 96473001--96473025 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96472991 ACAAAGACAG
96473001 ACACGGCCGTGCA
1 ACACGGCCGTGCA
96473014 ACACGGCCGTGC
1 ACACGGCCGTGC
96473026 GCACTAACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.32, T:0.08
Consensus pattern (13 bp):
ACACGGCCGTGCA
Found at i:96484404 original size:44 final size:44
Alignment explanation
Indices: 96484354--96484743 Score: 557
Period size: 44 Copynumber: 8.9 Consensus size: 44
96484344 TCACTAATAG
96484354 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* *
96484398 CAGATTTGGCGTCTTTGTATTGACAGAGAGCA-AACTGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATC-GAAGATGA
*
96484442 CAGATTTGGCGTATCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
96484486 CAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * *
96484530 CAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * * * * * *
96484574 CAGGTTTGGTGTCTCTATATTGTCAGAGAGCATATCAAAGCTGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * *
96484618 TAGGTTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* ** * *
96484662 CGGATTTGGTATCTCTGTATTGTCAAAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
96484706 CAAATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGA
96484744 GGATAATGGA
Statistics
Matches: 307, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
43 2 0.01
44 303 0.99
45 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
Found at i:96484488 original size:21 final size:21
Alignment explanation
Indices: 96484462--96484533 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
96484452 GTATCTGTAT
96484462 TGACAGAGAGCAGATCGAAGA
1 TGACAGAGAGCAGATCGAAGA
** * *
96484483 TGACAGATTTG-GCATCTCTGTA-T
1 TGACAGA---GAGCAGATC-GAAGA
96484506 TGACAGAGAGCAGATCGAAGA
1 TGACAGAGAGCAGATCGAAGA
96484527 TGACAGA
1 TGACAGA
96484534 TTTGGCATCT
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 3 0.08
21 19 0.51
23 12 0.32
24 3 0.08
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.19
Consensus pattern (21 bp):
TGACAGAGAGCAGATCGAAGA
Found at i:96486325 original size:32 final size:35
Alignment explanation
Indices: 96486275--96486346 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 35
96486265 ATTTACATTG
* *
96486275 TTATA-CATTTTATTTATATATTTTA-T-AATATA
1 TTATATCATTTTATCTATATATATTATTCAATATA
*
96486307 TTATATCATTTTA-CTATATATATTATTCATTATA
1 TTATATCATTTTATCTATATATATTATTCAATATA
96486341 TTATAT
1 TTATAT
96486347 TTATTATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 15 0.44
33 8 0.24
34 11 0.32
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (35 bp):
TTATATCATTTTATCTATATATATTATTCAATATA
Found at i:96486341 original size:34 final size:32
Alignment explanation
Indices: 96486275--96486346 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 32
96486265 ATTTACATTG
*
96486275 TTATA-CATTTTATTTATATATTTTATAATATA
1 TTATATCATTTTATATATATATTTTAT-ATATA
96486307 TTATATCATTTTACTATATATATTATTCAT-TATA
1 TTATATCATTTTA-TATATATATT-TT-ATATATA
96486341 TTATAT
1 TTATAT
96486347 TTATTATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
32 5 0.14
33 7 0.20
34 19 0.54
35 2 0.06
36 2 0.06
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (32 bp):
TTATATCATTTTATATATATATTTTATATATA
Found at i:96486345 original size:21 final size:22
Alignment explanation
Indices: 96486297--96486364 Score: 77
Period size: 21 Copynumber: 3.1 Consensus size: 22
96486287 TTTATATATT
*
96486297 TTATAATATATTATATCATTTTA
1 TTAT-ATATATTATATCATTATA
*
96486320 CTATATATATTAT-TCATTATA
1 TTATATATATTATATCATTATA
* *
96486341 TTATATTTATTATAT-TTTATA
1 TTATATATATTATATCATTATA
96486362 TTA
1 TTA
96486365 CTTCAATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
21 26 0.67
22 10 0.26
23 3 0.08
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (22 bp):
TTATATATATTATATCATTATA
Found at i:96486740 original size:25 final size:25
Alignment explanation
Indices: 96486685--96486740 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
96486675 TGTTTTAACA
*
96486685 TGTTAATTTTATCTCATATATTATT
1 TGTTATTTTTATCTCATATATTATT
* *
96486710 TGTTATTTTTATGTCATTTTATTA-T
1 TGTTATTTTTATCTCA-TATATTATT
96486735 TGTTAT
1 TGTTAT
96486741 ATATCCGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.64
Consensus pattern (25 bp):
TGTTATTTTTATCTCATATATTATT
Found at i:96488721 original size:7 final size:7
Alignment explanation
Indices: 96488709--96488747 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
96488699 TTAAACCTGC
96488709 TAAAAAA
1 TAAAAAA
96488716 T-AAAAA
1 TAAAAAA
96488722 TAAAAAA
1 TAAAAAA
96488729 TAAAAAA
1 TAAAAAA
96488736 T-AAAAA
1 TAAAAAA
96488742 TAAAAA
1 TAAAAA
96488748 GTAGTTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 12 0.40
7 18 0.60
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAA
Found at i:96488722 original size:6 final size:6
Alignment explanation
Indices: 96488711--96488747 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
96488701 AAACCTGCTA
96488711 AAAAAT AAAAAT AAAAAAT AAAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT -AAAAAT -AAAAAT AAAAAT AAAAA
96488748 GTAGTTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 17 0.57
7 13 0.43
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:96488727 original size:13 final size:13
Alignment explanation
Indices: 96488709--96488747 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
96488699 TTAAACCTGC
96488709 TAAAAAATAAAAA
1 TAAAAAATAAAAA
96488722 TAAAAAATAAAAA
1 TAAAAAATAAAAA
96488735 -ATAAAAATAAAAA
1 TA-AAAAATAAAAA
96488748 GTAGTTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 1 0.04
13 24 0.96
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:96488734 original size:20 final size:20
Alignment explanation
Indices: 96488709--96488747 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
96488699 TTAAACCTGC
96488709 TAAAAAATAAAAATAAAAAA
1 TAAAAAATAAAAATAAAAAA
96488729 TAAAAAATAAAAATAAAAA
1 TAAAAAATAAAAATAAAAA
96488748 GTAGTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (20 bp):
TAAAAAATAAAAATAAAAAA
Found at i:96492708 original size:40 final size:39
Alignment explanation
Indices: 96492543--96492726 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
96492533 AAATTGATTG
* * *
96492543 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
96492583 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
96492623 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
96492663 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
96492702 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
96492727 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:96492751 original size:80 final size:81
Alignment explanation
Indices: 96492583--96492771 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
96492573 GCTGGAAATT
* * * *
96492583 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
96492648 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
96492664 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
96492727 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
96492743 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
96492772 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:96496982 original size:14 final size:13
Alignment explanation
Indices: 96496959--96496990 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
96496949 GGGATATCAA
96496959 AACAATAATTAAG
1 AACAATAATTAAG
96496972 AACACATAATTAAG
1 AACA-ATAATTAAG
96496986 AACAA
1 AACAA
96496991 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:96502544 original size:25 final size:25
Alignment explanation
Indices: 96502516--96502566 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
96502506 CCCTTATAAT
* * *
96502516 GTAAAAATGACCTTTTTGCCCCTAG
1 GTAAAAATGACCATTATACCCCTAG
96502541 GTAAAAATGACCATTATACCCCTAG
1 GTAAAAATGACCATTATACCCCTAG
96502566 G
1 G
96502567 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
GTAAAAATGACCATTATACCCCTAG
Found at i:96502622 original size:10 final size:10
Alignment explanation
Indices: 96502607--96502645 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
96502597 TGCGTTTGTA
96502607 CATGATATGC
1 CATGATATGC
*
96502617 CATGATATGTA
1 CATGATATG-C
96502628 CATGATATGC
1 CATGATATGC
96502638 CATGATAT
1 CATGATAT
96502646 ATTCAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (10 bp):
CATGATATGC
Found at i:96502628 original size:21 final size:21
Alignment explanation
Indices: 96502603--96502645 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
96502593 ATACTGCGTT
96502603 TGTACATGATATGCCATGATA
1 TGTACATGATATGCCATGATA
96502624 TGTACATGATATGCCATGATA
1 TGTACATGATATGCCATGATA
96502645 T
1 T
96502646 ATTCAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (21 bp):
TGTACATGATATGCCATGATA
Found at i:96510451 original size:10 final size:10
Alignment explanation
Indices: 96510436--96510474 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
96510426 TGCTTTTGTA
96510436 CATGATATGC
1 CATGATATGC
96510446 CATGATATGC
1 CATGATATGC
96510456 ACATGATATGC
1 -CATGATATGC
96510467 CATGATAT
1 CATGATAT
96510475 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:96510460 original size:21 final size:21
Alignment explanation
Indices: 96510435--96510474 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
96510425 CTGCTTTTGT
96510435 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
96510456 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
96510475 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:96515863 original size:21 final size:21
Alignment explanation
Indices: 96515837--96515878 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
96515827 CCTAGACACA
96515837 TGGGCGTGTCTAATGCCGTGT
1 TGGGCGTGTCTAATGCCGTGT
96515858 TGGGCGTGTCTAATGCCGTGT
1 TGGGCGTGTCTAATGCCGTGT
96515879 GAGGCACACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.10, C:0.19, G:0.38, T:0.33
Consensus pattern (21 bp):
TGGGCGTGTCTAATGCCGTGT
Found at i:96530516 original size:17 final size:18
Alignment explanation
Indices: 96530485--96530519 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
96530475 CCCTGGGTTG
96530485 TAAGTTAGCAGCAATAAT
1 TAAGTTAGCAGCAATAAT
96530503 TAAGTTAG-AGCAATAAT
1 TAAGTTAGCAGCAATAAT
96530520 AACCGGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.29
Consensus pattern (18 bp):
TAAGTTAGCAGCAATAAT
Found at i:96534786 original size:22 final size:23
Alignment explanation
Indices: 96534764--96534815 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
96534754 ATGTCATTAC
96534764 TTTTATTCTAT-TTTAAGACTACT
1 TTTTATTCT-TCTTTAAGACTACT
96534787 TTTTATTCTTCTTTAAG-CTTA-T
1 TTTTATTCTTCTTTAAGAC-TACT
96534809 TTTTATT
1 TTTTATT
96534816 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTTCTTTAAGACTACT
Found at i:96543300 original size:46 final size:46
Alignment explanation
Indices: 96543250--96543425 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
96543240 TGGTTGAGCA
96543250 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
96543296 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
96543341 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
96543389 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96543426 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:96543406 original size:93 final size:93
Alignment explanation
Indices: 96543247--96543418 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
96543237 GGATGGTTGA
* *
96543247 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96543312 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
96543340 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96543405 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
96543419 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96550847 original size:46 final size:45
Alignment explanation
Indices: 96550797--96550971 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
96550787 TGGTTGAGCA
96550797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
96550843 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
96550889 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
96550935 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96550972 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:96550951 original size:92 final size:92
Alignment explanation
Indices: 96550794--96550964 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
96550784 GGATGGTTGA
* *
96550794 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96550859 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
96550886 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96550951 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
96550965 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Done.