Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 312 of 410
Found at i:96902628 original size:30 final size:30
Alignment explanation
Indices: 96902597--96902655 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
96902587 AAATATTATA
*
96902597 AAATAAT-AAAATTATTAGAAA-TTATTAAT
1 AAATAATAAAAACTATTA-AAATTTATTAAT
*
96902626 AAATTATAAAAACTATTAAAATTTATTAAT
1 AAATAATAAAAACTATTAAAATTTATTAAT
96902656 TTTTATAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (30 bp):
AAATAATAAAAACTATTAAAATTTATTAAT
Found at i:96902647 original size:18 final size:17
Alignment explanation
Indices: 96902553--96902648 Score: 77
Period size: 17 Copynumber: 5.4 Consensus size: 17
96902543 ATATAAATTA
* *
96902553 AAAATCATAAAAACATT
1 AAAATTATAAAAATATT
* *
96902570 AAAATTGTAAAAATAAT
1 AAAATTATAAAAATATT
*
96902587 AAATATTAT-AAAATAAT
1 AAA-ATTATAAAAATATT
*
96902604 AAAATTATTAGAAATTATT
1 AAAATTA-TA-AAAATATT
96902623 AATAAATTATAAAAACTATT
1 -A-AAATTATAAAAA-TATT
96902643 AAAATT
1 AAAATT
96902649 TATTAATTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
16 4 0.06
17 28 0.44
18 9 0.14
19 10 0.16
20 7 0.11
21 6 0.09
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATTATAAAAATATT
Found at i:96902693 original size:19 final size:19
Alignment explanation
Indices: 96902655--96902715 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
96902645 AATTTATTAA
96902655 TTTTTATAATGTTTGATAATTT
1 TTTTTATAAT-TTT--TAATTT
96902677 TTTTTATAATTTTTAATATT
1 TTTTTATAATTTTTAAT-TT
* * *
96902697 CTTGTA-AATTTTTTATTT
1 TTTTTATAATTTTTAATTT
96902715 T
1 T
96902716 AAAATACTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 2 0.06
19 13 0.38
20 6 0.18
21 3 0.09
22 10 0.29
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTTTATAATTTTTAATTT
Found at i:96903256 original size:40 final size:40
Alignment explanation
Indices: 96903201--96903285 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
96903191 AATAGAGAAA
96903201 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
1 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
*
96903241 TTTAACAATGTTAACAATTCTTAAAAGTTTACATAAACAT
1 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
96903281 TTTAA
1 TTTAA
96903286 TTTGAATAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.38
Consensus pattern (40 bp):
TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
Found at i:96906226 original size:18 final size:19
Alignment explanation
Indices: 96906185--96906227 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
96906175 TTAATTCATG
96906185 ATATTAATATCAAATAATA
1 ATATTAATATCAAATAATA
*
96906204 ATATTGAATAT-AATTAA-A
1 ATATT-AATATCAAATAATA
96906222 ATATTA
1 ATATTA
96906228 TATTAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 6 0.27
19 10 0.45
20 5 0.23
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
ATATTAATATCAAATAATA
Found at i:96911178 original size:42 final size:43
Alignment explanation
Indices: 96911069--96911240 Score: 129
Period size: 43 Copynumber: 4.0 Consensus size: 43
96911059 AGCTCGTACA
* * * *
96911069 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCGAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * *
96911112 ATGGCACTGTCCCAGATAGGGTCTTACACGAAATCAAATAT-G
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
96911154 ATGCCGA-TGTCCCAAACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACG-AAATCA-AATATCG
* ** * * *
96911198 ATGCCAAC-ATCCCAGATGTAGTCTTACACGAAAACACATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
96911241 GATCCTATGC
Statistics
Matches: 101, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
42 28 0.28
43 47 0.47
44 26 0.26
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:96914686 original size:68 final size:68
Alignment explanation
Indices: 96914572--96914826 Score: 229
Period size: 68 Copynumber: 3.8 Consensus size: 68
96914562 TTCTTAGTTC
* * * * *
96914572 ATTGTCTTGGC-AGGCTTTATATGTTGCCATAACCCAACTAT-GGTCTTACAATATTTAGTGCCA
1 ATTGTCTTGGCGA-ACTTCATATGTTGCCATAACCCAACAATAGATCTTACACTATTT-GTGCCA
96914635 TGTTT
64 TGTTT
* * * * *
96914640 ACTATCTTGGCGAACTTCGTATGTTGCCATAGCCCAACAATAG-TCTTACTCTATATTGTGCCAT
1 ATTGTCTTGGCGAACTTCATATGTTGCCATAACCCAACAATAGATCTTACACTAT-TTGTGCCAT
96914704 GTTT
65 GTTT
* * * * * *
96914708 ATTGT-TCTAGTGAACGTCATATGTTGCCATAGCCCATC--TACGATCTTACACTATATGGTGCC
1 ATTGTCT-TGGCGAACTTCATATGTTGCCATAACCCAACAATA-GATCTTACACTAT-TTGTGCC
96914770 ATGTTT
63 ATGTTT
* *
96914776 ATTGTCTTGAC-AGACTTCATATGTTACCATAACCCAACAAT-GATCTTACAC
1 ATTGTCTTGGCGA-ACTTCATATGTTGCCATAACCCAACAATAGATCTTACAC
96914827 CGTTATAGGC
Statistics
Matches: 152, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
66 2 0.01
67 3 0.02
68 141 0.93
69 5 0.03
70 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (68 bp):
ATTGTCTTGGCGAACTTCATATGTTGCCATAACCCAACAATAGATCTTACACTATTTGTGCCATG
TTT
Found at i:96914955 original size:122 final size:122
Alignment explanation
Indices: 96914732--96915002 Score: 339
Period size: 122 Copynumber: 2.2 Consensus size: 122
96914722 CGTCATATGT
* * * * * *
96914732 TGCCATAGCCCATCTACGATCTTACACTATATGGTGCCATGTTTATTGTCTTGACAGACTTCATA
1 TGCCATGGCCCAACTATGGTCTTACACTATATGGGGCCATGTTTATTGTCATGACAGACTTCATA
* *
96914797 TGTTACCATAACCCAACAATGATCTTACACCGTTATAGGCTTAAAGCCTCCGATCGG
66 TGTTACCATAACCCAACAATGATCGTACACCGTTATAGGCTTAAAGCCTCCAATCGG
*
96914854 TGCCATGGCCCAGCTATGGTCTTACACTATATGGGGCCATGTTTATTGTCATGA-AGGACTTCAT
1 TGCCATGGCCCAACTATGGTCTTACACTATATGGGGCCATGTTTATTGTCATGACA-GACTTCAT
* * ** * * * *
96914918 ATGTTACCAT-AGCCAACCTATGATCGTACACTTTTATAGGTTTAGAGCCTCTAATTGG
65 ATGTTACCATAACCCAA-CAATGATCGTACACCGTTATAGGCTTAAAGCCTCCAATCGG
* *
96914976 TGCCATGACCCAATTATGGTCTTACAC
1 TGCCATGGCCCAACTATGGTCTTACAC
96915003 ATCATTCCCA
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
121 6 0.05
122 122 0.95
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (122 bp):
TGCCATGGCCCAACTATGGTCTTACACTATATGGGGCCATGTTTATTGTCATGACAGACTTCATA
TGTTACCATAACCCAACAATGATCGTACACCGTTATAGGCTTAAAGCCTCCAATCGG
Found at i:96916741 original size:49 final size:50
Alignment explanation
Indices: 96916662--96916763 Score: 145
Period size: 49 Copynumber: 2.1 Consensus size: 50
96916652 TCCTATAGAG
* *
96916662 AACATATGGAAAGCATTAAACACTTCATATTCT-TACGAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAACTTCATATTCTCTACAAAAAAGAATTAT
* *
96916711 AACATATGGAAAGTATTAAAAACGTT-ATATTCTCTCCAAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAAC-TTCATATTCTCTACAAAAAAGAATTAT
96916761 AAC
1 AAC
96916764 TACCATGTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
49 28 0.60
50 19 0.40
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (50 bp):
AACATATGGAAAGCATTAAAAACTTCATATTCTCTACAAAAAAGAATTAT
Found at i:96922347 original size:21 final size:21
Alignment explanation
Indices: 96922323--96922388 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
96922313 ATGAGCTTTC
96922323 AAATGAGGGTACTATTTTGCA
1 AAATGAGGGTACTATTTTGCA
* ** *
96922344 AAATGA--TTAAGAGCTTT-C-
1 AAATGAGGGTACTA-TTTTGCA
96922362 AAATGAGGGTACTATTTTGCA
1 AAATGAGGGTACTATTTTGCA
96922383 AAATGA
1 AAATGA
96922389 TTAAGAGTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
18 6 0.19
19 7 0.22
20 7 0.22
21 12 0.38
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (21 bp):
AAATGAGGGTACTATTTTGCA
Found at i:96922358 original size:39 final size:39
Alignment explanation
Indices: 96922315--96922395 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
96922305 CTTGAAGCAT
96922315 GAGCTTTCAAATGAGGGTACTATTTTGCAAAATGATTAA
1 GAGCTTTCAAATGAGGGTACTATTTTGCAAAATGATTAA
96922354 GAGCTTTCAAATGAGGGTACTATTTTGCAAAATGATTAA
1 GAGCTTTCAAATGAGGGTACTATTTTGCAAAATGATTAA
96922393 GAG
1 GAG
96922396 TGTAGGGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (39 bp):
GAGCTTTCAAATGAGGGTACTATTTTGCAAAATGATTAA
Found at i:96922705 original size:30 final size:30
Alignment explanation
Indices: 96922647--96922705 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
96922637 ATTTTCGGGC
* **
96922647 CTAGGGGTAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGTAAAATGGTCATTTTACCAAAGT
96922677 CTAGGGGTAAAATGGTCATTTTACCAAAG
1 CTAGGGGTAAAATGGTCATTTTACCAAAG
96922706 ATATAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.32
Consensus pattern (30 bp):
CTAGGGGTAAAATGGTCATTTTACCAAAGT
Found at i:96923177 original size:46 final size:45
Alignment explanation
Indices: 96923125--96923252 Score: 138
Period size: 46 Copynumber: 2.8 Consensus size: 45
96923115 ATTGAGACGA
*
96923125 GTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGAC
1 GTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTACAAGAC
* * *
96923169 GTAAGCTAGTGTAAGACATGTCTT-GGACATGTATC-GACTACAAGAT
1 GT--GCTAGTGTAAGACATGT-TTGGGACATGCATCGGCCTACAAGAC
96923215 GTG-TCAGTGTAAGACCATGTTTGGGACATGACATCGGC
1 GTGCT-AGTGTAAGA-CATGTTTGGGACATG-CATCGGC
96923253 ACAGATATAC
Statistics
Matches: 69, Mismatches: 6, Indels: 15
0.77 0.07 0.17
Matches are distributed among these distances:
43 1 0.01
44 14 0.20
45 15 0.22
46 36 0.52
47 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (45 bp):
GTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTACAAGAC
Found at i:96924158 original size:19 final size:19
Alignment explanation
Indices: 96924134--96924183 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
96924124 GGTATAGAGC
96924134 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
96924153 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
96924172 ACACGCCCGTGT
1 ACACGCCCGTGT
96924184 CCTGAACCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:96925840 original size:108 final size:109
Alignment explanation
Indices: 96925696--96925896 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 109
96925686 ATCCTTTTGA
* *
96925696 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-TCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACTCACCAAT
*
96925759 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
96925804 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA-CTCACCAAT
96925869 TGCCATGCCTTAGCATGGTCTTACATGG
65 TGCCATGCCTTAGCATGGTCTTACATGG
96925897 TATCCTTGAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 4 0.05
108 47 0.56
109 6 0.07
110 27 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACTCACCAATT
GCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:96925851 original size:55 final size:54
Alignment explanation
Indices: 96925649--96925904 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
96925639 ACATGGGTGC
* * * * *
96925649 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
96925698 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * * *
96925751 ATCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * * * *
96925806 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
96925859 CCTTACCAATTGCCATGCCTT-AGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTG
96925905 AACCCAAATG
Statistics
Matches: 172, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
49 40 0.23
52 4 0.02
53 45 0.26
54 9 0.05
55 72 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:96930188 original size:39 final size:39
Alignment explanation
Indices: 96930143--96930299 Score: 278
Period size: 39 Copynumber: 4.0 Consensus size: 39
96930133 AAGCAAGACA
*
96930143 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
96930182 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
96930221 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
96930260 CTGGAACTGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
96930299 C
1 C
96930300 CGGTAACATA
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:96933065 original size:46 final size:45
Alignment explanation
Indices: 96932974--96933088 Score: 110
Period size: 46 Copynumber: 2.5 Consensus size: 45
96932964 GTGCCAATGT
* *
96932974 ATGTCCCAGACATGTCTTACACTAGCTTTCATAATATGGCTGATG-C
1 ATGTCCCAGACATGTCTTACACTAGCTGTCATAATA--GCCGATGCC
96933020 ATGTCCCAGACATGTCTTACACTAGCCCTCGTC-TCAATA-CCGATGCC
1 ATGTCCCAGACATGTCTTACACTAG--CT-GTCAT-AATAGCCGATGCC
* *
96933067 ATGTCCCAAACAGGGTCTTACA
1 ATGTCCCAGACA-TGTCTTACA
96933089 TTGGCACACA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
46 30 0.51
47 12 0.20
48 11 0.19
49 6 0.10
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTAGCTGTCATAATAGCCGATGCC
Found at i:96935668 original size:53 final size:54
Alignment explanation
Indices: 96935540--96935795 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
96935530 ACATGGGTAC
* * * **
96935540 CTTACCATTGCCATGACTTGTCATGGTCTTATGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
96935589 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
96935642 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
96935697 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
96935750 CCTTACCAATTGCCATGCCTT-AGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTG
96935796 AACCCAAATG
Statistics
Matches: 174, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
49 37 0.21
50 1 0.01
52 2 0.01
53 49 0.28
54 11 0.06
55 72 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:96935731 original size:108 final size:110
Alignment explanation
Indices: 96935587--96935787 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
96935577 ATCCTTTTGA
* *
96935587 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
96935650 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
96935695 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
96935760 TGCCATGCCTTAGCATGGTCTTACATGG
66 TGCCATGCCTTAGCATGGTCTTACATGG
96935788 TATCCTTGAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:96937816 original size:28 final size:28
Alignment explanation
Indices: 96937773--96937839 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
96937763 CACACGGTCT
* * *
96937773 AGGACAGGGGCGTGTTATGGCCGTGTGA
1 AGGACACGGGCATGTTATGGCAGTGTGA
96937801 AGGACACGGGCATGTTATGGCAGTGTGA
1 AGGACACGGGCATGTTATGGCAGTGTGA
*
96937829 AAGACACGGGC
1 AGGACACGGGC
96937840 TAGGCACACG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.42, T:0.18
Consensus pattern (28 bp):
AGGACACGGGCATGTTATGGCAGTGTGA
Found at i:96939832 original size:31 final size:30
Alignment explanation
Indices: 96939792--96939859 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
96939782 ATAATTTAAG
* *
96939792 ATAAGTATGAAAGATATTTACATTAAATTGA
1 ATAAATATGAAAGATATTTAAATTAAATT-A
* *
96939823 TTAAATATGAAATATATTTAAATTAAATTA
1 ATAAATATGAAAGATATTTAAATTAAATTA
96939853 ATAAATA
1 ATAAATA
96939860 CATTTAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.38
Consensus pattern (30 bp):
ATAAATATGAAAGATATTTAAATTAAATTA
Found at i:96945629 original size:2 final size:2
Alignment explanation
Indices: 96945622--96945649 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
96945612 TGTGGTAAGG
96945622 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96945650 GAAGAATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96946639 original size:27 final size:27
Alignment explanation
Indices: 96946608--96946660 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
96946598 TTTAAGTGTC
*
96946608 AAAAAGGTTCTGAAAGTTCTTGATTTT
1 AAAAAGGTTCTGAAAGTTCTCGATTTT
96946635 AAAAAGGTTCTGAAAGTTCTCGATTT
1 AAAAAGGTTCTGAAAGTTCTCGATTT
96946661 AGTCTCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AAAAAGGTTCTGAAAGTTCTCGATTTT
Found at i:96952825 original size:14 final size:16
Alignment explanation
Indices: 96952802--96952833 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
96952792 ATATCCACAT
96952802 ACCAATATATAA-TCA
1 ACCAATATATAATTCA
96952817 ACCAA-ATATAATTCA
1 ACCAATATATAATTCA
96952832 AC
1 AC
96952834 ATATCGTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (16 bp):
ACCAATATATAATTCA
Found at i:96961754 original size:11 final size:11
Alignment explanation
Indices: 96961735--96961764 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
96961725 TGTTTGAAGC
96961735 AAAAA-AAAAA
1 AAAAAGAAAAA
96961745 AAAAAGAAAAA
1 AAAAAGAAAAA
96961756 AAAAAGAAA
1 AAAAAGAAA
96961765 GGAATTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:96961756 original size:15 final size:15
Alignment explanation
Indices: 96961736--96961765 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96961726 GTTTGAAGCA
96961736 AAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAG
*
96961751 AAAAAAAAAAGAAAG
1 AAAAAAAAAAAAAAG
96961766 GAATTTCAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:96964053 original size:98 final size:96
Alignment explanation
Indices: 96963923--96964117 Score: 320
Period size: 98 Copynumber: 2.0 Consensus size: 96
96963913 CCTTACTTAT
* *
96963923 CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGCATAATATCCTTTAAGAAAGTGCACAAA
1 CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGAATAATATCCCTTAA-AAA-TGCACAAA
*
96963988 AATAGTCACAATAATTGAATCAAAATATGCCAA
64 AATAGTCACAATAATCGAATCAAAATATGCCAA
*
96964021 CTAAATATCTTCCTCATGTAAA-TAATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAA
1 CTAAATATCTTCCTCAAGTAAACT-ATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAA
96964085 ATAGTCACAATAATCGAATCAAAATATGCCAA
65 ATAGTCACAATAATCGAATCAAAATATGCCAA
96964117 C
1 C
96964118 AAAACAAGCT
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
96 41 0.45
97 4 0.04
98 47 0.51
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (96 bp):
CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAAA
TAGTCACAATAATCGAATCAAAATATGCCAA
Found at i:96972526 original size:55 final size:55
Alignment explanation
Indices: 96972452--96972573 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
96972442 CTCGTGCTGT
* * ** * *
96972452 TTTGGCAGGTTCGTCCACGGTTGCTTGGCACGGGCGTGTTGCACGCCTGTGTTAA
1 TTTGACAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCGCACGCCTGTGTTAA
* * **
96972507 TTTGACAGGTTTGGCCACGGTTTCAAGGCACAGGCGTGTCGCACGCCTGTGTTGT
1 TTTGACAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCGCACGCCTGTGTTAA
*
96972562 TTTGGCAGGTTC
1 TTTGACAGGTTC
96972574 ACCCATGGCC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.31
Consensus pattern (55 bp):
TTTGACAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCGCACGCCTGTGTTAA
Found at i:96976329 original size:75 final size:75
Alignment explanation
Indices: 96976201--96976350 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
96976191 AATGTACTCT
96976201 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
1 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
*
96976266 TAAGAATTAA
66 CAAGAATTAA
*
96976276 TAGATAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
1 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
96976341 CAAGAATTAA
66 CAAGAATTAA
96976351 GAACACATAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (75 bp):
TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
CAAGAATTAA
Found at i:96979428 original size:19 final size:20
Alignment explanation
Indices: 96979404--96979441 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
96979394 CTAATGCATG
96979404 TCCCAGACAT-GTCTTACAC
1 TCCCAGACATGGTCTTACAC
96979423 TCCCAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
96979442 ATGGCTCCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.26, C:0.34, G:0.13, T:0.26
Consensus pattern (20 bp):
TCCCAGACATGGTCTTACAC
Found at i:96981162 original size:27 final size:27
Alignment explanation
Indices: 96981124--96981178 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
96981114 TCTACGGGGA
*
96981124 TACCTTTAAAAACACTCGATCACCGAC
1 TACCTTTAAAAACACTCAATCACCGAC
96981151 TACCTTTAAAAACACTCAATCACCGAC
1 TACCTTTAAAAACACTCAATCACCGAC
96981178 T
1 T
96981179 TGAAATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.33, G:0.05, T:0.24
Consensus pattern (27 bp):
TACCTTTAAAAACACTCAATCACCGAC
Found at i:96987994 original size:46 final size:46
Alignment explanation
Indices: 96987938--96988066 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
96987928 TGGTTGAGCA
* *
96987938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
96987984 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
96988030 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96988067 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 4 0.05
46 74 0.95
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:96995498 original size:46 final size:45
Alignment explanation
Indices: 96995448--96995622 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
96995438 TGGTTGAGCA
96995448 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
96995494 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
96995540 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
96995586 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96995623 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:96995602 original size:92 final size:92
Alignment explanation
Indices: 96995445--96995615 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
96995435 GGATGGTTGA
* *
96995445 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96995510 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
96995537 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96995602 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
96995616 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:97000567 original size:46 final size:46
Alignment explanation
Indices: 97000472--97000641 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
97000462 CTCGTAGCCG
* * * ** * * *
97000472 ATGCATGTCCCCGACATGTCTTACGCTGGCT-TACGTCGCGAGGCTA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTATCAATGCCA
*
97000518 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAATGCCA
* * *
97000564 ATGCCATGTCCCAGACATGGTCTTACAATGGCTCTC--AT-AATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTATCAA--T-GCCA
97000612 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
97000642 GCACACATGA
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.02
46 51 0.49
47 30 0.29
48 21 0.20
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAATGCCA
Found at i:97000619 original size:47 final size:45
Alignment explanation
Indices: 97000517--97000641 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 45
97000507 TCGCGAGGCT
* *
97000517 AATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCC
1 AATGCATGTCCCAGACATGTCTTACAATAGCTCTCG-ATCAATGCC
*
97000563 AATGCCATGTCCCAGACATGGTCTTACAATGGCTCTC-AT-AATGTGGCC
1 AATG-CATGTCCCAGACAT-GTCTTACAATAGCTCTCGATCAA--T-GCC
* *
97000611 GATGCATGTCCCAGACATGTCTTACACTAGC
1 AATGCATGTCCCAGACATGTCTTACAATAGC
97000642 GCACACATGA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 16 0.24
47 29 0.43
48 21 0.31
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
AATGCATGTCCCAGACATGTCTTACAATAGCTCTCGATCAATGCC
Found at i:97004524 original size:50 final size:50
Alignment explanation
Indices: 97004470--97004597 Score: 148
Period size: 50 Copynumber: 2.6 Consensus size: 50
97004460 ATGAACAAAT
* * * ** *
97004470 GAGTTACTTAATGCAAGACTTAATTAAAGATGCACACTTAGTTATCATGG
1 GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
* * * *
97004520 GAGTTACATAATGCATGTCATAATTTAATATGCAAACTTAACTATCATGA
1 GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
* *
97004570 GAGTTACATAATGCATGGCATAATTAAA
1 GAGTTACATAATGCAAGACATAATTAAA
97004598 TCATTAACTT
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (50 bp):
GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
Found at i:97009032 original size:212 final size:217
Alignment explanation
Indices: 97008650--97009048 Score: 619
Period size: 212 Copynumber: 1.8 Consensus size: 217
97008640 GTAAAAAACG
* **
97008650 ACATTATAATAATAAAAAATTTAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCAAA
1 ACATTATAATAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCC--A
* * *
97008715 CAAAAAAATAAATAAATAACACAACAAAAGTTCAATTAACCAACAACAATAACAAACCAAACCAA
64 C--AAAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAAACAAACCAA
* *
97008780 ACTAATAACAATAACACATTAGCTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCC
127 ACTAATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCC
97008845 AAATAAACAACAAAAACAATACAACA
192 AAATAAACAACAAAAACAATACAACA
* *
97008871 ACATTGTAATAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCAGT-C-C-
1 ACATTATAATAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCACA
*
97008933 AAAA-AAA-AAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAAACAAACCAAACTA
66 AAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAAACAAACCAAACTA
*
97008996 ATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
131 ATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
97009049 TTGTGCTTCA
Statistics
Matches: 166, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
212 102 0.61
213 3 0.02
214 4 0.02
217 1 0.01
220 1 0.01
221 55 0.33
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.19
Consensus pattern (217 bp):
ACATTATAATAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCACA
AAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAAACAAACCAAACTA
ATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAAT
AAACAACAAAAACAATACAACA
Found at i:97011466 original size:30 final size:30
Alignment explanation
Indices: 97011431--97011497 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
97011421 GTTAAATTAA
97011431 AAATTAATTAATATAATAATACAATAGCAT
1 AAATTAATTAATATAATAATACAATAGCAT
*
97011461 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAATACAATAGCAT
97011491 AAATTAA
1 AAATTAA
97011498 AAATAGATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (30 bp):
AAATTAATTAATATAATAATACAATAGCAT
Found at i:97012927 original size:40 final size:39
Alignment explanation
Indices: 97012847--97012974 Score: 107
Period size: 41 Copynumber: 3.2 Consensus size: 39
97012837 CGTTTTTAGT
* *
97012847 GGCGTTTGGACAA-AAAACACCGCAAAAATT-ATACATTAGC
1 GGCGTTT-G-CAATAAAACACCGCAAAAATTGA-GCAATAGC
97012887 GGCGTTTGCAATAAAACACCGCAAAAAATTGAGCAATAGC
1 GGCGTTTGCAATAAAACACCGC-AAAAATTGAGCAATAGC
* **** * *
97012927 GACGTTTTTTGTCCAAACGCCGCTAAAAATTGAGCAATAGC
1 GGCGTTTGCAAT-AAAACACCGC-AAAAATTGAGCAATAGC
97012968 GGCGTTT
1 GGCGTTT
97012975 TTGGTCCAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
38 3 0.04
39 11 0.15
40 27 0.37
41 32 0.44
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (39 bp):
GGCGTTTGCAATAAAACACCGCAAAAATTGAGCAATAGC
Found at i:97012960 original size:41 final size:41
Alignment explanation
Indices: 97012900--97012992 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
97012890 GTTTGCAATA
* * *
97012900 AAACACCGCAAAAAATTGAGCAATAGCGACGTTTTTTGTCC
1 AAACGCCGCTAAAAATTGAGCAATAGCGACGTTTTTGGTCC
*
97012941 AAACGCCGCTAAAAATTGAGCAATAGCGGCGTTTTTGGTCC
1 AAACGCCGCTAAAAATTGAGCAATAGCGACGTTTTTGGTCC
97012982 AAACGCCGCTA
1 AAACGCCGCTA
97012993 TAGATCGAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (41 bp):
AAACGCCGCTAAAAATTGAGCAATAGCGACGTTTTTGGTCC
Found at i:97013027 original size:41 final size:41
Alignment explanation
Indices: 97012964--97013186 Score: 239
Period size: 41 Copynumber: 5.6 Consensus size: 41
97012954 AATTGAGCAA
* **
97012964 TAGCGGCGTTTTTGGTCCAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGG-AAAAACGCCGCTATAGATCGAGGTTT
*
97013006 TAGCGGCGCTTTTGGAAAAACGCCAC--T--AT--AGG--T
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * * * *
97013039 CAGCGGCGCTTCTGGAAAAATGCCGCTATAGGTCAAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* *
97013080 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTTGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
* * * *
97013121 TAGGGGCGCTTTTGGAGAAGCGCCGCTATAGATCGAGCTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
97013162 TAGCGGCGCTTTT-GAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
97013187 AAAAAATATA
Statistics
Matches: 150, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
33 23 0.15
35 4 0.03
37 3 0.02
39 4 0.03
40 10 0.07
41 92 0.61
42 14 0.09
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
Found at i:97013049 original size:33 final size:33
Alignment explanation
Indices: 97013007--97013073 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
97012997 TCGAGGTTTT
*
97013007 AGCGGCGCTTTTGGAAAAACGCCACTATAGGTC
1 AGCGGCGCTTCTGGAAAAACGCCACTATAGGTC
* *
97013040 AGCGGCGCTTCTGGAAAAATGCCGCTATAGGTC
1 AGCGGCGCTTCTGGAAAAACGCCACTATAGGTC
97013073 A
1 A
97013074 AGGTTTTAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (33 bp):
AGCGGCGCTTCTGGAAAAACGCCACTATAGGTC
Found at i:97013068 original size:74 final size:78
Alignment explanation
Indices: 97012982--97013184 Score: 245
Period size: 74 Copynumber: 2.6 Consensus size: 78
97012972 TTTTTGGTCC
97012982 AAACGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCAC-TA-T-AGG-TCAGC
1 AAACGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACATAGTGAGGTTCAGC
97013043 GGCGCTTCTGGAA
66 GGCGCTTCTGGAA
* * * *
97013056 AAATGCCGCTATAGGTCAAGGTTTTAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTTGAGGTTT
1 AAACGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCAC-ATA-G-TGAGG-TT
* * * *
97013121 TAGGGGCGCTTTTGGAG
62 CAGCGGCGCTTCTGGAA
* *
97013138 AAGCGCCGCTATAGATCGAGCTTTTAGCGGCGCTTTT-GAAAAACGCC
1 AAACGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACGCC
97013185 GCAAAAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
74 46 0.43
76 2 0.02
79 1 0.01
80 3 0.03
81 10 0.09
82 46 0.43
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (78 bp):
AAACGCCGCTATAGATCGAGGTTTTAGCGGCGCTTTTGGAAAAACGCCACATAGTGAGGTTCAGC
GGCGCTTCTGGAA
Found at i:97013380 original size:14 final size:14
Alignment explanation
Indices: 97013343--97013490 Score: 61
Period size: 14 Copynumber: 10.4 Consensus size: 14
97013333 TATCATTATA
* *
97013343 GTTTAGGGTTTAGC
1 GTTTAAGGTTTAGG
* *
97013357 GTATATGGTTTAGG
1 GTTTAAGGTTTAGG
*
97013371 GTTTAAGGTTTAAG
1 GTTTAAGGTTTAGG
*
97013385 ATTTAAGAGTTACTA--
1 GTTTAAG-GTT--TAGG
*
97013400 TTTTAAGGTTTATGG
1 GTTTAAGGTTTA-GG
* *
97013415 G-TTATGGGTTTAGT
1 GTTTA-AGGTTTAGG
* * *
97013429 GTTTATGATTTATG
1 GTTTAAGGTTTAGG
* *
97013443 GTTTAAGGGTTGGG
1 GTTTAAGGTTTAGG
97013457 GTTTAAGG-TTAGGG
1 GTTTAAGGTTTA-GG
* *
97013471 GTTTAGGGGTTAGGG
1 GTTTAAGGTTTA-GG
97013486 GTTTA
1 GTTTA
97013491 TGGGTTATAT
Statistics
Matches: 102, Mismatches: 22, Indels: 19
0.71 0.15 0.13
Matches are distributed among these distances:
12 2 0.02
13 2 0.02
14 67 0.66
15 29 0.28
17 2 0.02
ACGTcount: A:0.21, C:0.01, G:0.34, T:0.44
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:97013426 original size:22 final size:21
Alignment explanation
Indices: 97013377--97013450 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 21
97013367 TAGGGTTTAA
* *
97013377 GGTTTAAGATTTAAGAGTTACT
1 GGTTTAAGGTTTATGAGTTA-T
** *
97013399 ATTTTAAGGTTTATGGGTTAT
1 GGTTTAAGGTTTATGAGTTAT
*
97013420 GGGTTT-AGTGTTTATGATTTAT
1 -GGTTTAAG-GTTTATGAGTTAT
97013442 GGTTTAAGG
1 GGTTTAAGG
97013451 GTTGGGGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
21 9 0.22
22 31 0.77
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.47
Consensus pattern (21 bp):
GGTTTAAGGTTTATGAGTTAT
Found at i:97016738 original size:3 final size:3
Alignment explanation
Indices: 97016730--97016807 Score: 147
Period size: 3 Copynumber: 25.7 Consensus size: 3
97016720 ATTGGTAACA
97016730 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
97016776 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
97016808 ATGTTAAAGC
Statistics
Matches: 74, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 71 0.96
4 3 0.04
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:97018634 original size:24 final size:24
Alignment explanation
Indices: 97018577--97018623 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
97018567 AACCATGATG
97018577 GTTAATTATTACGAGTTTTGTAGT
1 GTTAATTATTACGAGTTTTGTAGT
*
97018601 GTTAATTATTACTAGTTTTGTAG
1 GTTAATTATTACGAGTTTTGTAG
97018624 CTTCTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (24 bp):
GTTAATTATTACGAGTTTTGTAGT
Found at i:97018897 original size:43 final size:43
Alignment explanation
Indices: 97018850--97018941 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
97018840 CGTTTTCAAA
* * * *
97018850 AAAAGTGCCGCTAAAAGTCATGATTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCATTTGCGGG
* * *
97018893 AAAAGCGCCTCTAAAGGTCATGGTCTTTAGCGGCATTTGCGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCATTTGCGGG
97018936 AAAAGC
1 AAAAGC
97018942 TGCAATGCCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGATCTTTAGCGGCATTTGCGGG
Found at i:97020790 original size:30 final size:30
Alignment explanation
Indices: 97020756--97020815 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
97020746 CCTTAATACG
97020756 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
97020786 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
97020816 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:97021649 original size:21 final size:21
Alignment explanation
Indices: 97021625--97021664 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97021615 ATATATTAAT
97021625 TTTTAAAATATATTAAAAAGG
1 TTTTAAAATATATTAAAAAGG
* * *
97021646 TTTTCAAATTTCTTAAAAA
1 TTTTAAAATATATTAAAAA
97021665 AATAATTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTTAAAATATATTAAAAAGG
Found at i:97022160 original size:18 final size:18
Alignment explanation
Indices: 97022111--97022267 Score: 84
Period size: 19 Copynumber: 8.4 Consensus size: 18
97022101 TCTTTACGTT
* *
97022111 TTTATAATTTTCTTATGAC
1 TTTATAATTTT-TTATAAA
**
97022130 TTTATAAAATTTTATAAA
1 TTTATAATTTTTTATAAA
97022148 TTTATAATTTTTTAT--A
1 TTTATAATTTTTTATAAA
* * *
97022164 TTTCTATATATTTTATAAT
1 TTTATA-ATTTTTTATAAA
* *
97022183 TTTTTACGATTTTTATAAAAA
1 TTTATA--ATTTTT-TATAAA
* **
97022204 TTTACAATTTTTTATATTT
1 TTTATAATTTTTTATA-AA
* **
97022223 TTTATGATTTTTATATATT
1 TTTATAATTTTT-TATAAA
*
97022242 TTTATAATTTTTAATAAA
1 TTTATAATTTTTTATAAA
*
97022260 TTTTTAAT
1 TTTATAAT
97022268 ATTTGAATTT
Statistics
Matches: 105, Mismatches: 26, Indels: 15
0.72 0.18 0.10
Matches are distributed among these distances:
16 6 0.06
17 8 0.08
18 31 0.30
19 43 0.41
20 9 0.09
21 8 0.08
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTATAATTTTTTATAAA
Found at i:97022161 original size:10 final size:10
Alignment explanation
Indices: 97022148--97022265 Score: 79
Period size: 10 Copynumber: 12.4 Consensus size: 10
97022138 ATTTTATAAA
97022148 TTTATAATTT
1 TTTATAATTT
97022158 TTTAT-A-TT
1 TTTATAATTT
* *
97022166 TCTAT-ATAT
1 TTTATAATTT
97022175 TTTATAATTT
1 TTTATAATTT
**
97022185 TTTACGA-TT
1 TTTATAATTT
***
97022194 TTTATAAAAA
1 TTTATAATTT
*
97022204 TTTACAATTT
1 TTTATAATTT
97022214 TTTAT-ATTT
1 TTTATAATTT
*
97022223 TTTATGA-TT
1 TTTATAATTT
97022232 TTTAT-ATATT
1 TTTATAAT-TT
97022242 TTTATAATTT
1 TTTATAATTT
* *
97022252 TTAATAAATT
1 TTTATAATTT
97022262 TTTA
1 TTTA
97022266 ATATTTGAAT
Statistics
Matches: 83, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
8 8 0.10
9 29 0.35
10 44 0.53
11 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTATAATTT
Found at i:97022268 original size:11 final size:10
Alignment explanation
Indices: 97022130--97022265 Score: 76
Period size: 10 Copynumber: 14.4 Consensus size: 10
97022120 TTCTTATGAC
*
97022130 TTTATAAAAT
1 TTTATAAATT
97022140 TTTATAAA--
1 TTTATAAATT
97022148 TTTAT-AATT
1 TTTATAAATT
*
97022157 TTT-TATATT
1 TTTATAAATT
* *
97022166 TCTATATA-T
1 TTTATAAATT
97022175 TTTAT-AATT
1 TTTATAAATT
*
97022184 TTT-TACGATT
1 TTTATA-AATT
**
97022194 TTTATAAAAA
1 TTTATAAATT
* *
97022204 TTTACAATTT
1 TTTATAAATT
*
97022214 TTTAT-ATTT
1 TTTATAAATT
*
97022223 TTTAT-GATT
1 TTTATAAATT
*
97022232 TTTATATATT
1 TTTATAAATT
97022242 TTTAT-AATT
1 TTTATAAATT
97022251 TTTAATAAATT
1 TTT-ATAAATT
97022262 TTTA
1 TTTA
97022266 ATATTTGAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
7 2 0.02
8 8 0.08
9 39 0.40
10 40 0.41
11 9 0.09
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTATAAATT
Found at i:97022271 original size:20 final size:19
Alignment explanation
Indices: 97022139--97022265 Score: 93
Period size: 19 Copynumber: 6.8 Consensus size: 19
97022129 CTTTATAAAA
97022139 TTTTATAAA--TTTATAAT
1 TTTTATAAATTTTTATAAT
* *
97022156 TTTT-TATATTTCTAT-AT
1 TTTTATAAATTTTTATAAT
* **
97022173 ATTTTATAATTTTTTACGAT
1 -TTTTATAAATTTTTATAAT
** *
97022193 TTTTATAAAAATTTACAAT
1 TTTTATAAATTTTTATAAT
* *
97022212 TTTT-TATATTTTTTATGAT
1 TTTTATA-AATTTTTATAAT
*
97022231 TTTTATATATTTTTATAAT
1 TTTTATAAATTTTTATAAT
97022250 TTTTAATAAATTTTTA
1 TTTT-ATAAATTTTTA
97022266 ATATTTGAAT
Statistics
Matches: 83, Mismatches: 19, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
16 3 0.04
17 6 0.07
18 10 0.12
19 50 0.60
20 14 0.17
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATAAATTTTTATAAT
Found at i:97026746 original size:1 final size:1
Alignment explanation
Indices: 97026740--97026767 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
97026730 TTAAAATGTG
97026740 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
97026768 CCAAGTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:97033023 original size:21 final size:20
Alignment explanation
Indices: 97032972--97033034 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
97032962 TCGAGTTAGG
97032972 ATGATAAAATAGGATTCGTC
1 ATGATAAAATAGGATTCGTC
97032992 ATGATAAAATAGGATTCGTC
1 ATGATAAAATAGGATTCGTC
97033012 ATGATAAAAATAGGATTCGTC
1 ATGAT-AAAATAGGATTCGTC
97033033 AT
1 AT
97033035 CTCGATTAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
20 25 0.60
21 17 0.40
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (20 bp):
ATGATAAAATAGGATTCGTC
Found at i:97035503 original size:29 final size:29
Alignment explanation
Indices: 97035458--97035516 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
97035448 TCACTATGAT
97035458 TATACTATTGTTCGATAGGTGTGCTTGCC
1 TATACTATTGTTCGATAGGTGTGCTTGCC
*
97035487 TATACTATTGTTTGATAGGTGTGCTTGCC
1 TATACTATTGTTCGATAGGTGTGCTTGCC
97035516 T
1 T
97035517 TAGTCGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44
Consensus pattern (29 bp):
TATACTATTGTTCGATAGGTGTGCTTGCC
Found at i:97039562 original size:25 final size:27
Alignment explanation
Indices: 97039518--97039573 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 27
97039508 TTTCCTCTTC
97039518 TTTACTAATTATTTATTTATTA-T-AT
1 TTTACTAATTATTTATTTATTAGTCAT
97039543 TTTACT-ATTATTGT-TATTATTAGTCAT
1 TTTACTAATTATT-TAT-TTATTAGTCAT
97039570 TTTA
1 TTTA
97039574 TTCTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 7 0.26
25 13 0.48
26 1 0.04
27 6 0.22
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (27 bp):
TTTACTAATTATTTATTTATTAGTCAT
Found at i:97041319 original size:85 final size:85
Alignment explanation
Indices: 97041183--97041351 Score: 275
Period size: 85 Copynumber: 2.0 Consensus size: 85
97041173 GGGTCACATG
*
97041183 GCCAACCACACGCCCATGTGTCTAGCCCGTGTACCCTTCAAAATGGCCACACACGCCCATATGCC
1 GCCAACCACACACCCATGTGTCTAGCCCGTGTACCCTTCAAAATGGCCACACACGCCCATATGCC
*
97041248 AAGGCTGTGTGCCTCACACA
66 AAGGCTGTGTACCTCACACA
* * ** *
97041268 GCCAACCATACACCCGTGTGTCTAGCTTGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
1 GCCAACCACACACCCATGTGTCTAGCCCGTGTACCCTTCAAAATGGCCACACACGCCCATATGCC
97041333 AAGGCTGTGTACCTCACAC
66 AAGGCTGTGTACCTCACAC
97041352 GGTTACCAGA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 77 1.00
ACGTcount: A:0.24, C:0.37, G:0.19, T:0.20
Consensus pattern (85 bp):
GCCAACCACACACCCATGTGTCTAGCCCGTGTACCCTTCAAAATGGCCACACACGCCCATATGCC
AAGGCTGTGTACCTCACACA
Found at i:97048198 original size:43 final size:42
Alignment explanation
Indices: 97048065--97048216 Score: 109
Period size: 42 Copynumber: 3.6 Consensus size: 42
97048055 TGTGTTATCG
*
97048065 TGTAAGACCAC-GTCTGGGACGTTGGCA-C-TGACTTATGATTTACA
1 TGTAAGACC-CTGTCTGGGACGTTGACATCAT-A-TT-TGA-TTACA
* * * ***
97048109 TGTAAGACCATGTTTGGGACGTTTACATCATATTTGATTTTG
1 TGTAAGACCCTGTCTGGGACGTTGACATCATATTTGATTACA
*
97048151 TGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGAC-GTTGACATC-ATATTTGATTACA
*
97048194 TGTAA-ACCAC-GTCTGGGATGTTG
1 TGTAAGACC-CTGTCTGGGACGTTG
97048217 GCATTGTACG
Statistics
Matches: 86, Mismatches: 15, Indels: 16
0.74 0.13 0.14
Matches are distributed among these distances:
41 1 0.01
42 38 0.44
43 20 0.23
44 24 0.28
45 2 0.02
46 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACGTTGACATCATATTTGATTACA
Found at i:97049609 original size:21 final size:21
Alignment explanation
Indices: 97049584--97049627 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
97049574 GGGACTCTGT
97049584 AATGATGTATG-ATTATGTGTG
1 AATGAT-TATGAATTATGTGTG
* *
97049605 AATGATTGTGAATTATTTGTG
1 AATGATTATGAATTATGTGTG
97049626 AA
1 AA
97049628 ATGTTTCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (21 bp):
AATGATTATGAATTATGTGTG
Found at i:97049814 original size:34 final size:34
Alignment explanation
Indices: 97049776--97049843 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
97049766 CATTGAACAA
97049776 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
1 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
*
97049810 AGATAGGCCCTAATTCCAAAAATAACAAAAATTG
1 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
97049844 CTAAGTAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (34 bp):
AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
Found at i:97051938 original size:15 final size:15
Alignment explanation
Indices: 97051918--97051947 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97051908 GAGATTTTGA
97051918 GCCTTTAGAGCATAC
1 GCCTTTAGAGCATAC
*
97051933 GCCTTTTGAGCATAC
1 GCCTTTAGAGCATAC
97051948 ATTTTTCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (15 bp):
GCCTTTAGAGCATAC
Found at i:97058224 original size:6 final size:6
Alignment explanation
Indices: 97058206--97058293 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
97058196 AAGAAACATT
* *
97058206 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
97058255 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
97058294 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:97058227 original size:18 final size:18
Alignment explanation
Indices: 97058215--97058293 Score: 72
Period size: 19 Copynumber: 4.3 Consensus size: 18
97058205 TATCAGAACT
97058215 AGAATCAGAATCAAAATC
1 AGAATCAGAATCAAAATC
* *
97058233 AGAATCAG-GTGACAGAATC
1 AGAATCAGAAT--CAAAATC
**
97058252 AGAATCAGAATCAGTATC
1 AGAATCAGAATCAAAATC
97058270 AGGTAA-CAGAATCAAAATC
1 A-G-AATCAGAATCAAAATC
97058289 AGAAT
1 AGAAT
97058294 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
17 3 0.06
18 16 0.33
19 27 0.55
20 3 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (18 bp):
AGAATCAGAATCAAAATC
Found at i:97058290 original size:31 final size:31
Alignment explanation
Indices: 97058215--97058293 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
97058205 TATCAGAACT
* *
97058215 AGAATCAGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
97058246 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
97058277 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
97058294 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:97058478 original size:27 final size:27
Alignment explanation
Indices: 97058436--97058500 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
97058426 AGTAAGTTGA
* * *
97058436 GGCAAAGCCTCTAGAA-CAGATATTTGT
1 GGCAAAGCCACCAGAATCAGATA-ATGT
*
97058463 GGCATAGCCACCAGAATCAGATAATGT
1 GGCAAAGCCACCAGAATCAGATAATGT
97058490 GGCAAAGCCAC
1 GGCAAAGCCAC
97058501 TTAACAGAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.81
28 6 0.19
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
GGCAAAGCCACCAGAATCAGATAATGT
Found at i:97059105 original size:27 final size:27
Alignment explanation
Indices: 97059067--97059998 Score: 977
Period size: 27 Copynumber: 34.3 Consensus size: 27
97059057 GGACAAAAAT
* * * * *
97059067 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97059094 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059121 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97059148 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059175 AGTAATTCTACCCTACAGGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
97059202 GATATTTTTACCCTACAAGGGTATATA
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059229 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97059256 AGTAATTTTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
97059283 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *** ****
97059310 GATAATTTTGCCCTGTTCTA-CCCTACAGG
1 GGTAATTCTACCC--TAC-AGGGGTATTTC
***
97059339 GGT-ATT-T-TGGTA-A----T-TTTGC
1 GGTAATTCTACCCTACAGGGGTATTT-C
** *
97059358 CCT-GTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059384 GGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059411 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97059438 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059465 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
97059492 GGTAATTCTACCCTACAGGCTATAGGGGTATTTC
1 GGTAATTCTACCCT--A--C---AGGGGTATTTC
* *
97059526 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059553 AGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059580 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059607 GGTAATTCTACGCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059634 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059661 GATAATTTTACCCTACAGGCTACAAGGGTATTTC
1 GGTAATTCTACCCTACA-G------GGGTATTTC
* * *
97059695 GATAATTTTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059722 GGTAATTCTACCCCACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
97059749 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059776 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059803 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059830 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059857 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059884 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
97059911 GGTAATTCTACCCTATAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
97059938 GATAATTCTACCCTATAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059965 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
97059992 GATAATT
1 GGTAATT
97059999 TTGTAAATCG
Statistics
Matches: 764, Mismatches: 114, Indels: 54
0.82 0.12 0.06
Matches are distributed among these distances:
19 4 0.01
20 1 0.00
21 2 0.00
22 2 0.00
24 1 0.00
26 3 0.00
27 688 0.90
28 3 0.00
29 7 0.01
30 1 0.00
32 1 0.00
33 1 0.00
34 50 0.07
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:97059338 original size:37 final size:37
Alignment explanation
Indices: 97059288--97059390 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
97059278 ATTCCGGTAA
*
97059288 TTCTACCCTACAGGGGTATTTCGATAATTTTGCCCTG
1 TTCTACCCTACAGGGGTATTTCGGTAATTTTGCCCTG
*
97059325 TTCTACCCTACAGGGGTATTTTGGTAATTTTGCCCTG
1 TTCTACCCTACAGGGGTATTTCGGTAATTTTGCCCTG
97059362 TTCTACCCTACAGGGGTATTTCGGTAATT
1 TTCTACCCTACAGGGGTATTTCGGTAATT
97059391 CTACTCTACA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.39
Consensus pattern (37 bp):
TTCTACCCTACAGGGGTATTTCGGTAATTTTGCCCTG
Found at i:97060013 original size:27 final size:27
Alignment explanation
Indices: 97059983--97060296 Score: 113
Period size: 27 Copynumber: 11.6 Consensus size: 27
97059973 TACCCTATAG
*
97059983 GGGTATTTCGATAATTTTGTAAATCGA
1 GGGTATTTCGATAATTTTATAAATCGA
** * * * *
97060010 GGGTAAAAT-GGTAATTCTGTAAATCAA
1 GGGT-ATTTCGATAATTTTATAAATCGA
* * *
97060037 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGATAATTTTATAAATCGA
* **
97060064 GGGTATTTCAATAATTTTATAGGTCGA
1 GGGTATTTCGATAATTTTATAAATCGA
* *
97060091 GGGTATTTC-AGTAATTTCACAAATC-A
1 GGGTATTTCGA-TAATTTTATAAATCGA
* * * *
97060117 GGGATATTTTGGTAATTTTACAAA-CTA
1 GGG-TATTTCGATAATTTTATAAATCGA
* * *
97060144 GGGGTATTTTGATAATTTTACAAA-CCA
1 -GGGTATTTCGATAATTTTATAAATCGA
* * * *
97060171 GGGTTATTTTGGTAATTTTACAAA-CCA
1 GGG-TATTTCGATAATTTTATAAATCGA
* * * * *
97060198 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTCGATAATTTTATAAATCGA
* * * * *
97060226 GGGTGTTTTGGTAATTTTACAAA-CTA
1 GGGTATTTCGATAATTTTATAAATCGA
* * * * *
97060252 GGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTCGATAATTTTATAAATCGA
* *
97060280 GGGTATTTTGGTAATTT
1 GGGTATTTCGATAATTT
97060297 GGTAAACTAA
Statistics
Matches: 236, Mismatches: 38, Indels: 26
0.79 0.13 0.09
Matches are distributed among these distances:
26 15 0.06
27 209 0.89
28 12 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTATAAATCGA
Found at i:97060303 original size:27 final size:27
Alignment explanation
Indices: 97060034--97060296 Score: 251
Period size: 27 Copynumber: 9.7 Consensus size: 27
97060024 TTCTGTAAAT
* **
97060034 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** * ***
97060061 CGAGGGTATTTCAATAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
97060088 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
97060115 C-AGGGATATTTTGGTAATTTTACAAAC
1 CAAGGG-TATTTTGGTAATTTTACAAAC
* * *
97060142 TAGGGGTATTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
97060169 C-AGGGTTATTTTGGTAATTTTACAAAC
1 CAAGGG-TATTTTGGTAATTTTACAAAC
* **
97060196 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
97060223 CAAGGGTGTTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
97060250 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
97060277 CAAGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
97060297 GGTAAACTAA
Statistics
Matches: 195, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
26 7 0.04
27 182 0.93
28 6 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:97060305 original size:54 final size:55
Alignment explanation
Indices: 97060116--97060296 Score: 278
Period size: 54 Copynumber: 3.3 Consensus size: 55
97060106 TTCACAAATC
* *
97060116 AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACC-
1 AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * *
97060170 AGGGTTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
97060225 AGGG-TGTTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
97060279 AGGG-TATTTTGGTAATTT
1 AGGGATATTTTGGTAATTT
97060297 GGTAAACTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
54 112 0.97
55 4 0.03
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (55 bp):
AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:97061770 original size:24 final size:24
Alignment explanation
Indices: 97061727--97061790 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
97061717 GAAATGTGCT
* *
97061727 ATATCATTATT-GAAGGACACAAC
1 ATATCACTATTAGAAGAACACAAC
97061750 ATATCACTATTAGAAGAACACAAC
1 ATATCACTATTAGAAGAACACAAC
**
97061774 ATATCACTGGTAGAAGA
1 ATATCACTATTAGAAGA
97061791 CACTAGTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 10 0.28
24 26 0.72
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.23
Consensus pattern (24 bp):
ATATCACTATTAGAAGAACACAAC
Found at i:97062962 original size:20 final size:20
Alignment explanation
Indices: 97062937--97062974 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97062927 GTTTATTCGC
*
97062937 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97062957 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97062975 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97064633 original size:28 final size:28
Alignment explanation
Indices: 97064601--97064669 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97064591 GCGTAGATCA
97064601 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97064629 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97064657 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97064670 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97070970 original size:20 final size:20
Alignment explanation
Indices: 97070945--97070982 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97070935 GTTTATTCGC
*
97070945 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97070965 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97070983 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97072641 original size:28 final size:28
Alignment explanation
Indices: 97072609--97072677 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97072599 GCGTAGATCA
97072609 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97072637 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97072665 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97072678 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97074110 original size:18 final size:19
Alignment explanation
Indices: 97074089--97074124 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
97074079 CACATCCAAA
*
97074089 TACAAAAT-TTTAAAATCT
1 TACAAAATATTGAAAATCT
97074107 TACAAAATATTGAAAATC
1 TACAAAATATTGAAAATC
97074125 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.33
Consensus pattern (19 bp):
TACAAAATATTGAAAATCT
Found at i:97080434 original size:28 final size:28
Alignment explanation
Indices: 97080388--97080456 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97080378 TTTAAAACCC
*
97080388 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97080415 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97080443 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97080457 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97082108 original size:20 final size:20
Alignment explanation
Indices: 97082085--97082122 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97082075 CACATCCAAA
*
97082085 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
97082105 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
97082123 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:97083636 original size:2 final size:2
Alignment explanation
Indices: 97083629--97083653 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97083619 TCATGACATG
97083629 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97083654 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97088419 original size:46 final size:45
Alignment explanation
Indices: 97088352--97088443 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 45
97088342 TCGCCTCGTC
97088352 TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCCACGGAATGCAT
1 TGGATGCGTCTGGATTAGTTCTTTTAGAG-CCCCCACGGAATGCAT
97088398 TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCACGGAATGCAT
1 TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCACGGAATGCAT
97088443 T
1 T
97088444 TACTCTCACC
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 17 0.37
46 29 0.63
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.32
Consensus pattern (45 bp):
TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCACGGAATGCAT
Found at i:97090785 original size:21 final size:23
Alignment explanation
Indices: 97090727--97090785 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
97090717 AATTTATATT
*
97090727 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
97090748 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
97090771 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
97090786 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:97090977 original size:16 final size:17
Alignment explanation
Indices: 97090941--97090991 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
97090931 TATATAGATA
* *
97090941 AAAAATATATAATAGTAT
1 AAAAATA-ATCATAATAT
97090959 AAAAATAA-CATAATAT
1 AAAAATAATCATAATAT
*
97090975 -AAAATAATTATAATAT
1 AAAAATAATCATAATAT
97090991 A
1 A
97090992 TATATGAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 7 0.25
16 13 0.46
17 1 0.04
18 7 0.25
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAAATAATCATAATAT
Found at i:97091045 original size:11 final size:12
Alignment explanation
Indices: 97091015--97091055 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
97091005 ATATGTAAAA
*
97091015 ATAATATATAAT
1 ATAATAAATAAT
97091027 ATATATAAATAAT
1 ATA-ATAAATAAT
97091040 -TAATAAAT-AT
1 ATAATAAATAAT
97091050 ATAATA
1 ATAATA
97091056 CAAGTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
10 2 0.08
11 11 0.42
12 5 0.19
13 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:97091063 original size:28 final size:28
Alignment explanation
Indices: 97091017--97091105 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 28
97091007 ATGTAAAAAT
*
97091017 AATATATAATATATA-TAAATAATTAATA
1 AATATATAATACA-AGTAAATAATTAATA
97091045 AATATATAATACAAGTAAA-AATATAATA
1 AATATATAATACAAGTAAATAAT-TAATA
97091073 ATGATATATGAATAACAATGTAAAATAA-TAATA
1 A--ATATAT-AAT-ACAA-GT-AAATAATTAATA
97091106 TTTTGTGAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
27 4 0.08
28 22 0.43
30 6 0.12
31 3 0.06
32 4 0.08
33 7 0.14
34 3 0.06
35 2 0.04
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (28 bp):
AATATATAATACAAGTAAATAATTAATA
Found at i:97091098 original size:32 final size:31
Alignment explanation
Indices: 97091033--97091105 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
97091023 TAATATATAT
97091033 AAATAATTAATAA--ATATATAATACAAGTAA
1 AAATAA-TAATAATGATATATAATACAAGTAA
97091063 AAAT-ATAATAATGATATATGAATAACAATGT-A
1 AAATAATAATAATGATATAT-AAT-ACAA-GTAA
97091095 AAATAATAATA
1 AAATAATAATA
97091106 TTTTGTGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
28 6 0.16
29 1 0.03
30 10 0.27
31 3 0.08
32 9 0.24
33 8 0.22
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATAATAATAATGATATATAATACAAGTAA
Found at i:97091173 original size:20 final size:19
Alignment explanation
Indices: 97090938--97091178 Score: 89
Period size: 20 Copynumber: 12.5 Consensus size: 19
97090928 TAATATATAG
97090938 ATAAAA-AATATATAATAGT
1 ATAAAATAATATATAATA-T
*
97090957 AT-AAA-AATA-A-CATAAT
1 ATAAAATAATATATAAT-AT
97090973 ATAAAATAAT-TATAATAT
1 ATAAAATAATATATAATAT
*
97090991 AT-ATATGAA-AGTAT-ATAT
1 ATAAAAT-AATA-TATAATAT
*
97091009 GTAAAAATAATATATAATAT
1 AT-AAAATAATATATAATAT
97091029 ATATAAATAAT-TAATAA-AT
1 ATA-AAATAATAT-ATAATAT
* *
97091048 ATATAATACA-AGTA-AAAAT
1 ATAAAATA-ATA-TATAATAT
*
97091067 ATAATAATGATATATGAATAACAAT
1 ATAA-AAT-A-ATAT--ATAA-TAT
* * *
97091092 GTAAAATAATA-ATATTTT
1 ATAAAATAATATATAATAT
* *
97091110 GTGAAAAGTAATATATAATAA
1 AT-AAAA-TAATATATAATAT
*
97091131 ATAATAATAATATA-AATAA
1 ATAA-AATAATATATAATAT
97091150 ATAAAATAATTATATAATAT
1 ATAAAATAA-TATATAATAT
*
97091170 ATAATATAA
1 ATAAAATAA
97091179 AAATAAGGTT
Statistics
Matches: 172, Mismatches: 19, Indels: 61
0.68 0.08 0.24
Matches are distributed among these distances:
16 5 0.03
17 8 0.05
18 36 0.21
19 46 0.27
20 50 0.29
21 10 0.06
22 4 0.02
23 2 0.01
24 5 0.03
25 6 0.03
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (19 bp):
ATAAAATAATATATAATAT
Found at i:97091176 original size:7 final size:7
Alignment explanation
Indices: 97091118--97091177 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
97091108 TTGTGAAAAG
97091118 TAATATA
1 TAATATA
*
97091125 TAATAAA
1 TAATATA
97091132 TAATA-A
1 TAATATA
97091138 TAATATA
1 TAATATA
*
97091145 -AATAAA
1 TAATATA
97091151 TAA-A-A
1 TAATATA
97091156 TAATTATA
1 TAA-TATA
97091164 TAATATA
1 TAATATA
97091171 TAATATA
1 TAATATA
97091178 AAAATAAGGT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
5 4 0.09
6 12 0.26
7 26 0.57
8 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
TAATATA
Found at i:97091246 original size:24 final size:24
Alignment explanation
Indices: 97091202--97091248 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
97091192 AATAAAACAA
*
97091202 ATAATAATAAAATAATTTATATAT
1 ATAATAATAAAATAATATATATAT
97091226 ATAATAATAGAAATAA-ATATATA
1 ATAATAATA-AAATAATATATATA
97091249 GGGTTAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATAATAAAATAATATATATAT
Found at i:97097517 original size:24 final size:24
Alignment explanation
Indices: 97097485--97097533 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
97097475 CAGATATCAT
97097485 GCTCAGTTAGACACCTTACAATTA
1 GCTCAGTTAGACACCTTACAATTA
97097509 GCTCAGTTAGACACCTTACAATTA
1 GCTCAGTTAGACACCTTACAATTA
97097533 G
1 G
97097534 GTCACGTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (24 bp):
GCTCAGTTAGACACCTTACAATTA
Found at i:97099031 original size:45 final size:45
Alignment explanation
Indices: 97098977--97099297 Score: 281
Period size: 45 Copynumber: 6.8 Consensus size: 45
97098967 TATGAGAGCT
97098977 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
* *
97099022 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
* * *
97099067 AGTGTAAGACGATGTCTGGGACATGGCATTGGCAC-CGATA-GATGATAGC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACTTGATATG-TG-T--C
* * *
97099116 TAGTGTAAGACCATTTTTGGGACATGACATC-AGCTTGATATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGATATGTGTC
* * * * *
97099162 AATGTAAGACCATGTCTGGGACATGGACATTGGCAC-CGATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGG-CA-TCG-ACTTGAT--AT--GTGTC
* *
97099213 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATATACGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATAT----GTGTC
**
97099263 AGTGTAAGACCATGTCTGGGACATAACATCGACTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT
97099298 TGATGGATGA
Statistics
Matches: 225, Mismatches: 29, Indels: 40
0.77 0.10 0.14
Matches are distributed among these distances:
45 92 0.41
46 11 0.05
47 7 0.03
48 5 0.02
49 17 0.08
50 65 0.29
51 28 0.12
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
Found at i:97099153 original size:95 final size:96
Alignment explanation
Indices: 97099021--97099286 Score: 390
Period size: 95 Copynumber: 2.7 Consensus size: 96
97099011 TGATATGTGT
*
97099021 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACGATGTCTGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACCATGTCTGG
*
97099086 GACATGG-CATTGGCACCGATAGATGATAGC
66 GACATGGACATTGGCACCGATAGATGAGAGC
* * * * * * *
97099116 TAGTGTAAGACCATTTTTGGGACATGACATCAGCTTGATATGTGTCAATGTAAGACCATGTCTGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACCATGTCTGG
97099181 GACATGGACATTGGCACCGATAGATGAGAGC
66 GACATGGACATTGGCACCGATAGATGAGAGC
*
97099212 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATATACGAGAGTCAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGATAT---A-TGTCAGTGTAAGACCATG
97099277 TCTGGGACAT
61 TCTGGGACAT
97099287 AACATCGACT
Statistics
Matches: 148, Mismatches: 17, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
95 64 0.43
96 50 0.34
97 8 0.05
101 26 0.18
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACCATGTCTGG
GACATGGACATTGGCACCGATAGATGAGAGC
Found at i:97099240 original size:140 final size:137
Alignment explanation
Indices: 97098968--97099297 Score: 360
Period size: 140 Copynumber: 2.3 Consensus size: 137
97098958 CTAGGGAGAT
* *
97098968 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTCAGTGTAAGACC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAATGTAAGACC
** * * *
97099033 ATGTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACGATGTCTGGGACATGGCATTG
66 ATGTCTGGGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACCATGTCTGGGA-A--GCATTG
97099098 GCACCGATAG
128 GCACCGATAG
* * *
97099108 ATGATAGCTAGTGTAAGACCATTTTTGGGACATGACATC-AGCTTGATATGTGTCAATGTAAGAC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGA-CTTGATATGTGTCAATGTAAGAC
*
97099172 CATGTCTGGGACATGGACATTGGCACCGATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
65 CATGTCTGGGACATGG-CATCGGC-CCGAT--AT-A-AGCCAGTGTAAGACCATGTCTGGGA-A-
* * *
97099237 GGCATCGGC-CTTGATAT
122 -GCATTGGCAC-CGATAG
* *
97099254 ACGAGAG-TCAGTGTAAGACCATGTCTGGGACATAACATCGACTT
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGACATCGACTT
97099298 TGATGGATGA
Statistics
Matches: 161, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
139 1 0.01
140 73 0.45
141 6 0.04
142 3 0.02
144 2 0.01
145 3 0.02
146 72 0.45
147 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (137 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAATGTAAGACC
ATGTCTGGGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACCATGTCTGGGAAGCATTGGCA
CCGATAG
Found at i:97099283 original size:146 final size:140
Alignment explanation
Indices: 97098970--97099297 Score: 410
Period size: 146 Copynumber: 2.3 Consensus size: 140
97098960 AGGGAGATAT
* *
97098970 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTCAGTGTAAGACCAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAATGTAAGACCAT
** * * * *
97099035 GTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACGATGTCTGGGACATGGCATTGGC
66 GTCTGGGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
*
97099100 ACCGATAGAT
131 ACCGATAGAC
* * *
97099110 GATAGCTAGTGTAAGACCATTTTTGGGACATGACATC-AGCTTGATATGTGTCAATGTAAGACCA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGA-CTTGATATGTGTCAATGTAAGACCA
*
97099174 TGTCTGGGACATGGACATTGGCACCGATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
65 TGTCTGGGACATGG-CATCGGC-CCGAT--AT-A-AGCCAGTGTAAGACCATGTCTGGGACATGG
* *
97099239 CATCGGC-CTTGATATAC
124 CATCGGCAC-CGATAGAC
*
97099256 GAGAG-TCAGTGTAAGACCATGTCTGGGACATAACATCGACTT
1 GAGAGCT-AGTGTAAGACCATGTCTGGGACATGACATCGACTT
97099298 TGATGGATGA
Statistics
Matches: 159, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
139 1 0.01
140 71 0.45
141 6 0.04
142 3 0.02
144 2 0.01
145 3 0.02
146 72 0.45
147 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (140 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAATGTAAGACCAT
GTCTGGGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
ACCGATAGAC
Found at i:97109214 original size:2 final size:2
Alignment explanation
Indices: 97109207--97109237 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
97109197 AGATACCTAG
97109207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97109238 AGCAATAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97112633 original size:44 final size:45
Alignment explanation
Indices: 97112584--97112671 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 45
97112574 AAAAAATGAA
*
97112584 AAACCTATTCT-AAAAATGGGAAGAAAAGAAAAAG-AAAAGAAAAG
1 AAACCTA-TCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAAG
97112628 AAACCTATCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAA
1 AAACCTATCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAA
97112672 TAAAATAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 3 0.07
44 29 0.71
45 9 0.22
ACGTcount: A:0.67, C:0.07, G:0.16, T:0.10
Consensus pattern (45 bp):
AAACCTATCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAAG
Found at i:97112699 original size:28 final size:28
Alignment explanation
Indices: 97112612--97112701 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
97112602 GGAAGAAAAG
*
97112612 AAAAAGAAAAGAAAAGAAACCT-ATCTA
1 AAAAATAAAAGAAAAGAAACCTAATCTA
* *** *
97112639 AAAAATGGAAAGAAAAGAAAAAGAA--AA
1 AAAAAT-AAAAGAAAAGAAACCTAATCTA
*
97112666 AGAAAATAAAATAAAAGAAACCTAATCTA
1 A-AAAATAAAAGAAAAGAAACCTAATCTA
97112695 AAAAATA
1 AAAAATA
97112702 TGGGAAGGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
27 20 0.43
28 23 0.50
29 3 0.07
ACGTcount: A:0.71, C:0.07, G:0.11, T:0.11
Consensus pattern (28 bp):
AAAAATAAAAGAAAAGAAACCTAATCTA
Found at i:97115651 original size:40 final size:40
Alignment explanation
Indices: 97115596--97115765 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
97115586 AACATTGGAA
97115596 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97115636 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97115676 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97115715 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97115756 CTATATCCGG
1 ATATATCCGG
97115766 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97123745 original size:40 final size:40
Alignment explanation
Indices: 97123690--97123859 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
97123680 AACATTGGAA
97123690 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97123730 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97123770 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97123809 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97123850 CTATATCCGG
1 ATATATCCGG
97123860 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97132400 original size:93 final size:93
Alignment explanation
Indices: 97132241--97132413 Score: 226
Period size: 93 Copynumber: 1.9 Consensus size: 93
97132231 CTGGTATATG
* * *
97132241 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
* *
97132306 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTCAGTCCGAGTTCGTGAGATGTAACTA
* * *
97132334 GGCATCC-AAGCTCGTTGATTTGAGTTCC-AGTTCACTTATGGATGCGAACGCCCGAGCAT-GTT
1 GGCATCCGAA-CTCATTGAGTTGAG-TCCAAGTTCACTTATGGATGCGAACGCCCGAAC-TCGTT
97132396 GAGTTCAGTCCGAGTTCG
63 GAGTTCAGTCCGAGTTCG
97132414 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 2 0.03
93 63 0.91
94 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTCAGTCCGAGTTCGTGAGATGTAACTA
Found at i:97135382 original size:15 final size:15
Alignment explanation
Indices: 97135360--97135430 Score: 76
Period size: 15 Copynumber: 4.7 Consensus size: 15
97135350 GTATCTTGGG
*
97135360 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
97135375 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
97135390 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
97135405 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
97135420 TTTCTTTATTC
1 TTTCTTTATTC
97135431 AGTTTTCTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
14 6 0.13
15 35 0.74
16 6 0.13
ACGTcount: A:0.11, C:0.15, G:0.13, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:97135429 original size:30 final size:30
Alignment explanation
Indices: 97135351--97135430 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
97135341 CATAGTATCG
* *
97135351 TATCTTGGGTTTCTTTATCCTGGATCTTTT
1 TATCTTGGATTTCTTTATTCTGGATCTTTT
*
97135381 TAT-TCTGGATTTCTTTATTCTGGGT-TTTT
1 TATCT-TGGATTTCTTTATTCTGGATCTTTT
97135410 CTATCTTGGATTTCTTTATTC
1 -TATCTTGGATTTCTTTATTC
97135431 AGTTTTCTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
29 5 0.11
30 38 0.86
31 1 0.02
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTTTT
Found at i:97137527 original size:93 final size:93
Alignment explanation
Indices: 97137357--97137529 Score: 238
Period size: 93 Copynumber: 1.9 Consensus size: 93
97137347 GGGATATTTG
* * * *
97137357 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACACGTTGAG
*
97137422 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTCAGTCCGAGTTCGTGAAATGTAACTA
* * * * * *
97137450 GGCATCCGAGCTTGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCACGTTGAT
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACACGTTGAG
*
97137515 TTCAGTCTGAGTTCG
66 TTCAGTCCGAGTTCG
97137530 CTTATGGGCG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACACGTTGAG
TTCAGTCCGAGTTCGTGAAATGTAACTA
Found at i:97139676 original size:29 final size:29
Alignment explanation
Indices: 97139644--97139719 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
97139634 GCTGGAAATG
* *
97139644 TATGGCACTAAGTGTGTGAACTCAAATTA
1 TATGGCACTAAGTGTGCGAACTCAAATCA
* ** *
97139673 TATGGCACTATGTGTGCGGGCTTAAATCA
1 TATGGCACTAAGTGTGCGAACTCAAATCA
*
97139702 CATGGCACTAAGTGTGCG
1 TATGGCACTAAGTGTGCG
97139720 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTCAAATCA
Found at i:97147005 original size:2 final size:2
Alignment explanation
Indices: 97146998--97147029 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
97146988 AGCATAGTTG
*
97146998 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97147030 TCGGCCATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:97147719 original size:29 final size:29
Alignment explanation
Indices: 97147687--97147762 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
97147677 GCTGGAAATG
*
97147687 TATGGCACTAAGTGTGCGAACTCAAATTA
1 TATGGCACTAAGTGTGCGAACTCAAATCA
* ** *
97147716 TATGGCACTATGTGTGCGGGCTTAAATCA
1 TATGGCACTAAGTGTGCGAACTCAAATCA
*
97147745 CATGGCACTAAGTGTGCG
1 TATGGCACTAAGTGTGCG
97147763 TGATCGAGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTCAAATCA
Found at i:97151406 original size:27 final size:27
Alignment explanation
Indices: 97151226--97151405 Score: 272
Period size: 27 Copynumber: 6.7 Consensus size: 27
97151216 CAATTTGTAG
* * *
97151226 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAA
97151253 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
* * *
97151280 AATTACCGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAA
*
97151307 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
97151334 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
*
97151361 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTACAA
97151388 AATTACCGTTTTACCCTC
1 AATTACCGTTTTACCCTC
97151406 AATTGTGAAA
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
26 1 0.01
27 138 0.99
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAA
Found at i:97151471 original size:27 final size:27
Alignment explanation
Indices: 97151441--97151591 Score: 164
Period size: 27 Copynumber: 5.6 Consensus size: 27
97151431 TGTAGGATAG
*
97151441 AATTACCACAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
97151468 AATTACCAAAACACCCCTAGTTAGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
97151495 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
97151522 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
97151549 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
97151576 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
97151592 TTGACTTGCA
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
26 5 0.05
27 94 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:97151484 original size:54 final size:54
Alignment explanation
Indices: 97151408--97151563 Score: 174
Period size: 54 Copynumber: 2.9 Consensus size: 54
97151398 TTACCCTCAA
* * * *
97151408 TTGTGAAATTACTGAAATACCCCT-G-TAGGATAGAATTACCACAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTTA-G-TAAAATTACCAAAATACCACTAGT
* * * *
97151462 TTGTAAAATTACCAAAACACCCCTAGTTAGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTTAGTAAAATTACCAAAATACCACTAGT
* *
97151516 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTTAGTAAAATTACCAAAATACC
97151564 CCTGATTTAC
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 4 0.05
54 78 0.91
55 2 0.02
56 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.28
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTTAGTAAAATTACCAAAATACCACTAGT
Found at i:97151609 original size:54 final size:54
Alignment explanation
Indices: 97151493--97151618 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
97151483 CCTAGTTAGT
* * *** * * *
97151493 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTCAACTTGC
**
97151547 AAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGACTTGC
1 AAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTCAACTTGC
* * *
97151601 AGATTTACCAAAACACCC
1 AAAATTACCAAAATACCC
97151619 TTGTAGGATG
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTCAACTTGC
Found at i:97151675 original size:27 final size:27
Alignment explanation
Indices: 97151643--97151694 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
97151633 GACTAAAATA
97151643 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
97151670 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
97151695 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:97162232 original size:2 final size:2
Alignment explanation
Indices: 97162185--97162220 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
97162175 TTAGTCATTA
97162185 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97162221 TGCCGAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97162785 original size:2 final size:2
Alignment explanation
Indices: 97162780--97162804 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97162770 CATATATAGG
97162780 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97162805 GTATGCCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97164289 original size:47 final size:49
Alignment explanation
Indices: 97164063--97164328 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
97164053 AGTCTGTACA
*
97164063 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
97164112 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
97164161 TGAAAGTGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
97164210 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
97164259 TG-AAG-GTGTATATATGTGATAAGGCTTAATGGCCAATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
97164306 TGAAA--GTGTATAAATGTGATAAG
1 TGAAAGTGTGTATATATGTGATAAG
97164329 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 58 0.28
48 5 0.02
49 145 0.70
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:97164990 original size:2 final size:2
Alignment explanation
Indices: 97164983--97165016 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97164973 TATTCGAAGG
97164983 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97165017 AGACAGCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97166884 original size:19 final size:19
Alignment explanation
Indices: 97166860--97166900 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
97166850 TTAAATTGTT
*
97166860 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
97166879 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
97166898 TTA
1 TTA
97166901 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:97167927 original size:2 final size:2
Alignment explanation
Indices: 97167920--97167949 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
97167910 TTCTTTGATA
97167920 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97167950 GCAGCCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.