Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 313 of 410
Found at i:97168608 original size:39 final size:39
Alignment explanation
Indices: 97168554--97168693 Score: 235
Period size: 39 Copynumber: 3.5 Consensus size: 39
97168544 TAATGGAGAA
97168554 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
97168593 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
97168632 TTATATCCGGGCTAAGTGCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
97168671 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
97168694 CATGCTTTGT
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 86 0.91
40 1 0.01
41 7 0.07
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:97170899 original size:20 final size:20
Alignment explanation
Indices: 97170874--97170940 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
97170864 GATATGATAT
*
97170874 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
97170894 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
97170914 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
97170934 ACATGAT
1 ACATGAT
97170941 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:97171068 original size:52 final size:51
Alignment explanation
Indices: 97170990--97171125 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 51
97170980 GAGGAAGTGC
*
97170990 AAAAGGGTTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
97171042 AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
97171093 AAAAGGGC-TCTGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
97171126 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 23 0.29
52 34 0.43
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:97171081 original size:25 final size:26
Alignment explanation
Indices: 97170990--97171125 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
97170980 GAGGAAGTGC
*
97170990 AAAAGGGTTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97171016 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
97171042 AAAAGGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97171068 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
97171093 AAAAGGGC-TCTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
97171116 AAAAGAGGCT
1 AAAAG-GGCT
97171126 AGGCCTCCAG
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 28 0.29
26 56 0.58
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:97171316 original size:42 final size:42
Alignment explanation
Indices: 97171257--97171348 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
97171247 TAGTCTCCCC
* ** *
97171257 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
97171299 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
97171341 AAATGGGC
1 AAATGGGC
97171349 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:97171407 original size:31 final size:31
Alignment explanation
Indices: 97171372--97171481 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
97171362 CGTTTACAGT
*
97171372 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
97171403 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
97171434 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
97171465 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
97171482 AACCGTTAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:97173743 original size:27 final size:27
Alignment explanation
Indices: 97173721--97173904 Score: 235
Period size: 27 Copynumber: 6.8 Consensus size: 27
97173711 CAATTTGTAG
* *
97173721 AATTACCATTTTACCCTAGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* * *
97173748 AATTACCGTTTCACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
* *
97173775 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* *
97173802 AATTACCATTTAACCCTCGATTTAGAA
1 AATTACCATTTTACCCTCGATTTATAA
* *
97173829 AATTACCATTTTACCTTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
97173856 AATTACCATTTTACCCTC-AGTTTATAA
1 AATTACCATTTTACCCTCGA-TTTATAA
* *
97173883 AATTACCGTTTTACCATCGATT
1 AATTACCATTTTACCCTCGATT
97173905 GTGAAATTAC
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 134 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTATAA
Found at i:97173824 original size:81 final size:80
Alignment explanation
Indices: 97173708--97173904 Score: 259
Period size: 81 Copynumber: 2.4 Consensus size: 80
97173698 ACTGAAATGT
* * * * *
97173708 CCTCAATTTGTAGAATTACCATTTTACCCTAGATTTATAGAATTACCGTTTCACCCTCGATTTAC
1 CCTC-ATTTATAGAATTACCATTTTACCCTCGATTTAGAAAATTACCATTTCACCCTCGATTTAC
*
97173773 AAAATTACCGTTTTAC
65 AAAATTACCATTTTAC
* * *
97173789 CCTCGATTTATAGAATTACCATTTAACCCTCGATTTAGAAAATTACCATTTTACCTTCGATTTAC
1 CCTC-ATTTATAGAATTACCATTTTACCCTCGATTTAGAAAATTACCATTTCACCCTCGATTTAC
97173854 AAAATTACCATTTTAC
65 AAAATTACCATTTTAC
* * *
97173870 CCTCAGTTTATAAAATTACCGTTTTACCATCGATT
1 CCTCA-TTTATAGAATTACCATTTTACCCTCGATT
97173905 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 100 0.99
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (80 bp):
CCTCATTTATAGAATTACCATTTTACCCTCGATTTAGAAAATTACCATTTCACCCTCGATTTACA
AAATTACCATTTTAC
Found at i:97173987 original size:27 final size:27
Alignment explanation
Indices: 97173935--97174059 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
97173925 CTGTGGGATG
*
97173935 AATTACCACAATA-CCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
97173961 AATTACCAAAACACCCCTAGTTAGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
97173988 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
97174015 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
97174042 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
97174060 GATTTACAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 14 0.17
27 64 0.78
28 4 0.05
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:97174064 original size:27 final size:27
Alignment explanation
Indices: 97173935--97174111 Score: 148
Period size: 27 Copynumber: 6.6 Consensus size: 27
97173925 CTGTGGGATG
*
97173935 AATTACCACAATA-CCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* *
97173961 AATTACCAAAACACCCCT-AGTTAGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
97173988 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
97174015 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
97174042 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
97174069 AATTA-TAGAAATACCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTGATTTGTAA
* *
97174096 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
97174112 TTGTAGGATG
Statistics
Matches: 120, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
26 15 0.12
27 100 0.83
28 5 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:97174102 original size:81 final size:80
Alignment explanation
Indices: 97173935--97174112 Score: 193
Period size: 81 Copynumber: 2.2 Consensus size: 80
97173925 CTGTGGGATG
* * *
97173935 AATTACCACAATACCCTAGTTTGTAAAATTACCAAAACACCCCTAGTTAGTAAAATTACCAAAAT
1 AATTACCAAAATACCCTAATTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACCAAAAT
*
97174000 ACCACTGGTTTGTGA
66 ACCACTGATTTGTGA
* * * *
97174015 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTA-CAAAATTA-TAGA
1 AATTACCAAAATACCCT-AATTTGTAAAATTACCAAAACACCCCT-AGTTAGCAAAATTACCA-A
97174078 AATACC-CTTGATTTGT-A
63 AATACCAC-TGATTTGTGA
* *
97174095 GATTTACCAAAACACCCT
1 -AATTACCAAAATACCCT
97174113 TGTAGGATGA
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
80 18 0.22
81 60 0.73
82 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCCTAATTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACCAAAAT
ACCACTGATTTGTGA
Found at i:97174175 original size:27 final size:27
Alignment explanation
Indices: 97174145--97174205 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
97174135 ACCTCTAATA
*
97174145 GGTAAAAAGACCGTAA-AGCCTCTGTAG
1 GGTAAAAAGACCGTAATACCCT-TGTAG
** *
97174172 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCTTGTAG
97174199 GGTAAAA
1 GGTAAAA
97174206 TGATGAATAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCTTGTAG
Found at i:97174940 original size:20 final size:20
Alignment explanation
Indices: 97174915--97175001 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
97174905 GATATGATAT
*
97174915 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
97174935 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
97174955 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
97174975 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
97174995 ACATGAT
1 ACATGAT
97175002 GGATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:97175080 original size:26 final size:26
Alignment explanation
Indices: 97175051--97175185 Score: 190
Period size: 25 Copynumber: 5.3 Consensus size: 26
97175041 GAGGAAGTTC
97175051 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
97175077 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
97175103 AAAAGGG-TTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97175128 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
97175153 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
97175176 AAAAGAGGCT
1 AAAAG-GGCT
97175186 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 53 0.54
26 34 0.34
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:97175128 original size:51 final size:51
Alignment explanation
Indices: 97175051--97175185 Score: 206
Period size: 51 Copynumber: 2.7 Consensus size: 51
97175041 GAGGAAGTTC
*
97175051 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
97175103 AAAAGGG-TTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
97175153 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
97175186 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
48 5 0.06
49 9 0.12
50 28 0.36
51 29 0.37
52 7 0.09
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:97175365 original size:42 final size:42
Alignment explanation
Indices: 97175318--97175405 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
97175308 TAGTCTCCCC
** *
97175318 AAATGGGCTTGCATACAT-TCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATATGATATTG
*
97175360 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATATGATATTG
97175402 AAAT
1 AAAT
97175406 AGGCCTATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATATGATATTG
Found at i:97175472 original size:31 final size:31
Alignment explanation
Indices: 97175433--97175511 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
97175423 CGTTTACAGT
97175433 AAAA-GCTTCGGCCCAGTGAAATGATTTATG
1 AAAAGGCTTCGGCCCAGTGAAATGATTTATG
* *
97175463 AAAAGGCTTCGGCCCAATGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGAAATGATTTATG
97175494 AAAAGGCTTCGGCCCAGT
1 AAAAGGCTTCGGCCCAGT
97175512 ATATGTCAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 4 0.09
31 41 0.91
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGAAATGATTTATG
Found at i:97177788 original size:27 final size:27
Alignment explanation
Indices: 97177772--97177954 Score: 244
Period size: 27 Copynumber: 6.8 Consensus size: 27
97177762 CAATTTGTAG
* *
97177772 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
* * *
97177799 AATTACCGTTTCACCATCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* * *
97177826 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
*
97177853 AATTACCATTTAACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
97177880 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
97177907 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
*
97177934 AA-TATCATTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
97177955 ATGAAATTAC
Statistics
Matches: 137, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
26 17 0.12
27 120 0.88
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:97177873 original size:81 final size:80
Alignment explanation
Indices: 97177758--97177954 Score: 270
Period size: 81 Copynumber: 2.4 Consensus size: 80
97177748 TACTGAAATG
* * *
97177758 CCCTCAATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCATCGATTTA
1 CCCTC-ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCATCGATTTA
*
97177823 CAAAATTACCGTTTTA
65 CAAAATTACCATTTTA
* * *
97177839 CCCTCGATTTATAGAATTACCATTTAACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
1 CCCTC-ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCATCGATTTA
97177904 CAAAATTACCATTTTA
65 CAAAATTACCATTTTA
* * *
97177920 CCCTCAGTTTACA-AAATATCATTTTACCCTCGATT
1 CCCTCA-TTTATAGAATTACCATTTTACCCTCGATT
97177955 ATGAAATTAC
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 20 0.19
81 83 0.81
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (80 bp):
CCCTCATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCATCGATTTAC
AAAATTACCATTTTA
Found at i:97178016 original size:27 final size:27
Alignment explanation
Indices: 97177958--97178083 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
97177948 CTCGATTATG
* **
97177958 AAATTACTAAAATACCCCT-GTAGGATA
1 AAATTACCAAAATACCCCTAGTTTG-TA
* * *
97177985 GAATTACCACAATACCCCTAGTTAGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
97178012 AAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
97178039 AAATTACCGAAAT--CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
97178065 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
97178084 GATTTACAAA
Statistics
Matches: 78, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
25 3 0.04
26 17 0.22
27 51 0.65
28 7 0.09
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:97178096 original size:27 final size:27
Alignment explanation
Indices: 97177953--97178135 Score: 106
Period size: 27 Copynumber: 6.8 Consensus size: 27
97177943 TTACCCTCGA
* *
97177953 TTATGAAATTACTAAAATACCCCTG-T
1 TTATAAAATTACCAAAATACCCCTGAT
** * * *
97177979 AGGATAGAATTACCACAATACCCCT-AG
1 -TTATAAAATTACCAAAATACCCCTGAT
* *
97178006 TTAGTAAAATTACCAAAATACCACTGGT
1 TTA-TAAAATTACCAAAATACCCCTGAT
* * * *
97178034 TTGTGAAATTACCGAAAT--CCCTCAAT
1 TTATAAAATTACCAAAATACCCCT-GAT
*
97178060 TTGTAAAATTACCAAAATACCCCTGAT
1 TTATAAAATTACCAAAATACCCCTGAT
* * *
97178087 TTACAAAATTA-TAGAAATACCCTTGAT
1 TTATAAAATTACCA-AAATACCCCTGAT
* * * *
97178114 TTGTAGATTTACCAAAACACCC
1 TTATAAAATTACCAAAATACCC
97178136 TTGTAGGATG
Statistics
Matches: 115, Mismatches: 33, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
25 3 0.03
26 19 0.17
27 86 0.75
28 7 0.06
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
TTATAAAATTACCAAAATACCCCTGAT
Found at i:97178096 original size:53 final size:54
Alignment explanation
Indices: 97178009--97178135 Score: 139
Period size: 53 Copynumber: 2.4 Consensus size: 54
97177999 CCCCTAGTTA
* * *** *
97178009 GTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAAT-CCCTCAATTT
1 GTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTCAATTT
* **
97178062 GTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGATTT
1 GTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTCAATTT
* * *
97178116 GTAGATTTACCAAAACACCC
1 GTAAAATTACCAAAATACCC
97178136 TTGTAGGATG
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
53 36 0.59
54 25 0.41
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTCAATTT
Found at i:97178965 original size:20 final size:20
Alignment explanation
Indices: 97178940--97179026 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
97178930 GATATGATAT
*
97178940 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
97178960 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
97178980 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
97179000 ACGTGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
97179020 ACATGAT
1 ACATGAT
97179027 GTATTCATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:97179173 original size:25 final size:26
Alignment explanation
Indices: 97179076--97179198 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
97179066 GAGGAAGTGC
* **
97179076 AAAAGGGCTTACGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
97179102 AAAAGGGCTTGTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
97179128 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
97179154 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
97179179 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
97179199 ATTAAAAGAG
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 35 0.38
26 57 0.62
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:97179391 original size:42 final size:42
Alignment explanation
Indices: 97179344--97179435 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
97179334 TAGTCTCCCC
* ** *
97179344 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
97179386 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
97179428 AAATGGGC
1 AAATGGGC
97179436 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:97179494 original size:31 final size:31
Alignment explanation
Indices: 97179459--97179562 Score: 190
Period size: 31 Copynumber: 3.4 Consensus size: 31
97179449 CGTTTACAGT
*
97179459 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
97179490 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
97179521 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
97179552 AAAGGCTTCGG
1 AAAGGCTTCGG
97179563 TCCACTAATC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:97189600 original size:30 final size:30
Alignment explanation
Indices: 97189544--97189601 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
97189534 CACGGGCTAC
* *
97189544 CACATGAGCGTGTGGCTAGACTGTGTGGAT
1 CACACGAGCGTGTGGCTAGACCGTGTGGAT
*
97189574 CACACGAGCGTGT-GCTTAGCCCGTGTGG
1 CACACGAGCGTGTGGC-TAGACCGTGTGG
97189602 GAATGGTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.17, C:0.22, G:0.36, T:0.24
Consensus pattern (30 bp):
CACACGAGCGTGTGGCTAGACCGTGTGGAT
Found at i:97191418 original size:18 final size:18
Alignment explanation
Indices: 97191397--97191447 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
97191387 AATATAGTTC
97191397 AAAAGACAAAATAAACATA
1 AAAAGA-AAAATAAACATA
97191416 AAAAGAAAAATAAACATA
1 AAAAGAAAAATAAACATA
* *
97191434 AAAATAAACATAAA
1 AAAAGAAAAATAAA
97191448 GACAAATGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 24 0.80
19 6 0.20
ACGTcount: A:0.76, C:0.08, G:0.04, T:0.12
Consensus pattern (18 bp):
AAAAGAAAAATAAACATA
Found at i:97191434 original size:6 final size:6
Alignment explanation
Indices: 97191404--97191447 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
97191394 TTCAAAAGAC
* * * *
97191404 AAAATA AACATA AAAAGA AAAATA AACATA AAAATA AACATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA
97191448 GACAAATGGA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:97193219 original size:71 final size:71
Alignment explanation
Indices: 97193135--97193298 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
97193125 CGATTTGTCT
97193135 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
97193200 CTTTCA
66 CTTTCA
97193206 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
97193271 CTTTCA
66 CTTTCA
97193277 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
97193299 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:97193336 original size:71 final size:70
Alignment explanation
Indices: 97193135--97193332 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
97193125 CGATTTGTCT
* * * *
97193135 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
97193200 CTTTCA
65 CTTTCA
* * * *
97193206 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
97193271 CTTTCA
65 CTTTCA
* *
97193277 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
97193333 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:97200795 original size:71 final size:71
Alignment explanation
Indices: 97200711--97200874 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
97200701 CGATTTGTCT
97200711 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
97200776 CTTTCA
66 CTTTCA
97200782 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
97200847 CTTTCA
66 CTTTCA
97200853 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
97200875 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:97200912 original size:71 final size:70
Alignment explanation
Indices: 97200711--97200908 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
97200701 CGATTTGTCT
* * * *
97200711 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
97200776 CTTTCA
65 CTTTCA
* * * *
97200782 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
97200847 CTTTCA
65 CTTTCA
* *
97200853 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
97200909 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:97206617 original size:24 final size:24
Alignment explanation
Indices: 97206590--97206796 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
97206580 CTTATTATGT
* * *
97206590 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
97206614 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97206638 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97206662 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
97206686 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
97206710 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
97206734 TCGTACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
97206758 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
97206782 TCGCACACATAGTGC
1 TCGCACACATAGTGC
97206797 ATTTGAGATA
Statistics
Matches: 171, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 171 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:97209651 original size:24 final size:24
Alignment explanation
Indices: 97209624--97209829 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
97209614 CTTATTATGT
* * *
97209624 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
97209648 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97209672 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97209696 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
97209720 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
97209744 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97209768 TCG-ACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
97209791 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
97209815 TCGCACACATAGTGC
1 TCGCACACATAGTGC
97209830 ATTTGAGATA
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
23 22 0.13
24 149 0.87
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:97217396 original size:24 final size:24
Alignment explanation
Indices: 97217369--97217575 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
97217359 CTTATTATGT
* * *
97217369 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
97217393 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97217417 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97217441 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
97217465 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
97217489 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
97217513 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
97217537 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
97217561 TCGCACACATAGTGC
1 TCGCACACATAGTGC
97217576 ATTTGAGATA
Statistics
Matches: 173, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 173 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:97218032 original size:2 final size:2
Alignment explanation
Indices: 97218025--97218050 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97218015 TGGGCATACT
97218025 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
97218051 CATACCCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97226762 original size:41 final size:41
Alignment explanation
Indices: 97226717--97226834 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
97226707 TGAAAGATAA
97226717 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
97226758 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
97226788 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
97226829 ATGTAG
1 ATGTAG
97226835 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:97226773 original size:71 final size:71
Alignment explanation
Indices: 97226685--97226848 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
97226675 GAGATGTATC
97226685 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
97226750 AGGACA
66 AGGACA
97226756 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
97226821 AGGACA
66 AGGACA
97226827 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
97226849 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:97243425 original size:11 final size:11
Alignment explanation
Indices: 97243409--97243437 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
97243399 TAAAAGATAA
97243409 AATAAAATATG
1 AATAAAATATG
97243420 AATAAAATATG
1 AATAAAATATG
97243431 AATAAAA
1 AATAAAA
97243438 CTTATCTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (11 bp):
AATAAAATATG
Found at i:97245404 original size:43 final size:42
Alignment explanation
Indices: 97245257--97245417 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 42
97245247 TGTGTTTTCG
* * **
97245257 TGTATGACCATGTCTGGGAC-GTTGGCATCG-ACTTATGATTTATG
1 TGTAAGACCATGTCTGGGACAG-TGGCATTGTA-TT-TGA-TTACA
** * *
97245301 TGTAAGACCATGTCCAGGACA-TCGGCATCGTATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGT-GGCATTGTATTTGATTACA
*
97245343 TGTAAGACTC-TGTTTGGGACAGTGGCATTGATATTTGATTACA
1 TGTAAGAC-CATGTCTGGGACAGTGGCATTG-TATTTGATTACA
*
97245386 TGTAAGACCAGGTCTGGGAC-GTTGGCATTGTA
1 TGTAAGACCATGTCTGGGACAG-TGGCATTGTA
97245418 CGAGCTTTCC
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 28 0.29
43 41 0.43
44 26 0.27
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTGGCATTGTATTTGATTACA
Found at i:97245975 original size:23 final size:24
Alignment explanation
Indices: 97245949--97245994 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
97245939 AGCCATGTGA
*
97245949 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
* *
97245972 TATGGTTTGATTTTTGTATATGA
1 TATGGCTTGATTTTGGTATATGA
97245995 AATGTGATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.17, C:0.02, G:0.26, T:0.54
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:97255108 original size:15 final size:15
Alignment explanation
Indices: 97255088--97255117 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97255078 GATCTTGAGC
97255088 CTTTAGAGCATGTTA
1 CTTTAGAGCATGTTA
97255103 CTTTAGAGCATGTTA
1 CTTTAGAGCATGTTA
97255118 AAACACCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
CTTTAGAGCATGTTA
Found at i:97261946 original size:13 final size:13
Alignment explanation
Indices: 97261928--97261952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97261918 AAAAATACAA
97261928 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
97261941 AAAAAGAAAAAA
1 AAAAAGAAAAAA
97261953 AGGATTCCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:97264372 original size:43 final size:43
Alignment explanation
Indices: 97264311--97264435 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 43
97264301 ATCACATGTA
* * *
97264311 TCGCATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAACGAACTCGGACCACTCAACGAGCTCAGATGC
*
97264354 TCGCATCCATAACGAACTCGGACCTCTCAACGAGCTCAGATGC
1 TCGCATCCATAACGAACTCGGACCACTCAACGAGCTCAGATGC
* ** * * * *
97264397 -CACATATATCACGAACCCAGACCACTCAACGAGTTCAGA
1 TCGCATCCATAACGAACTCGGACCACTCAACGAGCTCAGA
97264436 CTTTTTAATT
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 31 0.44
43 39 0.56
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (43 bp):
TCGCATCCATAACGAACTCGGACCACTCAACGAGCTCAGATGC
Found at i:97264425 original size:42 final size:43
Alignment explanation
Indices: 97264331--97264435 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 43
97264321 TATGAACTCG
* * * * *
97264331 GACCACTCAACGAGCTCGGATGCTCGCATCCATAACGAACTCG
1 GACCACTCAACGAGCTCAGATGCTCACATACATAACGAACCCA
* * *
97264374 GACCTCTCAACGAGCTCAGATGC-CACATATATCACGAACCCA
1 GACCACTCAACGAGCTCAGATGCTCACATACATAACGAACCCA
*
97264416 GACCACTCAACGAGTTCAGA
1 GACCACTCAACGAGCTCAGA
97264436 CTTTTTAATT
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 31 0.60
43 21 0.40
ACGTcount: A:0.31, C:0.34, G:0.18, T:0.16
Consensus pattern (43 bp):
GACCACTCAACGAGCTCAGATGCTCACATACATAACGAACCCA
Found at i:97267596 original size:43 final size:43
Alignment explanation
Indices: 97267536--97267648 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 43
97267526 TGTGATTATG
* ***
97267536 TGTAAGACCAT-GTCTGGGACATTGGCATCATTATTTGATTTCA
1 TGTAAGACCATAG-CTGGGACATTGGCATCATTATGTGAGAACA
* * *
97267579 TGTAAGACCATAGCTGGG-CTATCGACATCGTTATGTGAGAACA
1 TGTAAGACCATAGCTGGGAC-ATTGGCATCATTATGTGAGAACA
* *
97267622 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATAGCTGGGACATTGGCAT
97267649 TGTAAGAGCT
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
42 5 0.09
43 50 0.89
44 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGACATTGGCATCATTATGTGAGAACA
Found at i:97271672 original size:50 final size:50
Alignment explanation
Indices: 97271533--97271672 Score: 120
Period size: 50 Copynumber: 2.8 Consensus size: 50
97271523 GTTGTGAGAA
* ** * * *
97271533 CACATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAAATGGATTTATGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTG--TACCATGCAATTAGGT
* * * * * * *
97271585 CACGTGTGTAGTATTAAGTGCAAGTTACTACGGGTACCA-GACAATTAGGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCATG-CAATTAGGT
*
97271635 CGCATGTGTAGTACTAAGTACAGGCTACTATGTGTACC
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACC
97271673 CGATAACTTC
Statistics
Matches: 66, Mismatches: 21, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
49 1 0.02
50 39 0.59
52 26 0.39
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCATGCAATTAGGT
Found at i:97271765 original size:51 final size:51
Alignment explanation
Indices: 97271686--97271816 Score: 124
Period size: 51 Copynumber: 2.6 Consensus size: 51
97271676 TAACTTCGAT
* * * *
97271686 TACATGTGTGGTACTAAGTGCAA-ACCACTATGTGTA-AAAGATAGCTTTG-G
1 TACAAGTGTGGTACTATGTG-AAGACCACTATGTGAAGAAAG-TAGCTTTGAC
* *
97271736 TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGTAGCTTTGAC
1 T-ACAAGTGTGGTACTATGTGAAGACCACTATGTGAAGAAAGTAGCTTTGAC
* * * *
97271788 TACAAGGGTAGTACTATGTGCAGCCCACT
1 TACAAGTGTGGTACTATGTGAAGACCACT
97271817 GGGCATCCAT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
50 3 0.04
51 59 0.88
52 5 0.07
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (51 bp):
TACAAGTGTGGTACTATGTGAAGACCACTATGTGAAGAAAGTAGCTTTGAC
Found at i:97275425 original size:40 final size:40
Alignment explanation
Indices: 97275323--97275506 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
97275313 AAATTGAATG
* * * * * *
97275323 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97275363 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
97275403 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
97275443 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97275483 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
97275507 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:97275531 original size:80 final size:80
Alignment explanation
Indices: 97275363--97275551 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
97275353 GCTGGAAATT
* * *
97275363 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
97275428 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
97275443 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
97275506 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
97275523 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
97275552 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:97283453 original size:122 final size:120
Alignment explanation
Indices: 97283237--97283455 Score: 282
Period size: 122 Copynumber: 1.8 Consensus size: 120
97283227 AATTATGTGG
* * * *
97283237 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATCCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
* * **
97283302 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
97283357 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATAT-CCG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAAT-A-ATCCCG
*
97283420 GGCTAAG-CCCGAAGACAATTATGCTGGAAATTATAA
61 GGCTAAGTCCCGAAGACAATTATGCTAGAAATTATAA
97283456 CCGGGTTAAG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
120 15 0.18
122 53 0.63
123 14 0.17
124 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
AGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:97283514 original size:40 final size:40
Alignment explanation
Indices: 97283413--97283595 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
97283403 AAATTGAATG
* * * * *
97283413 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97283452 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
97283492 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
97283532 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97283572 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
97283596 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.13
40 102 0.86
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:97283620 original size:80 final size:80
Alignment explanation
Indices: 97283452--97283640 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
97283442 GCTGGAAATT
* * *
97283452 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
97283517 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
97283532 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
97283595 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
97283612 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
97283641 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:97286092 original size:28 final size:28
Alignment explanation
Indices: 97286060--97286128 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97286050 GCGTAGATCA
97286060 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97286088 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97286116 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97286129 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97287424 original size:15 final size:15
Alignment explanation
Indices: 97287406--97287440 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
97287396 TAAATCAATA
97287406 GTTTTAAAATAAAAT
1 GTTTTAAAATAAAAT
*
97287421 GTTTTCAAATAAAAT
1 GTTTTAAAATAAAAT
*
97287436 CTTTT
1 GTTTT
97287441 TATTTTCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (15 bp):
GTTTTAAAATAAAAT
Found at i:97292389 original size:20 final size:20
Alignment explanation
Indices: 97292364--97292401 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97292354 GTTTATTCGC
*
97292364 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
97292384 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
97292402 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:97294058 original size:28 final size:28
Alignment explanation
Indices: 97294026--97294094 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97294016 GCGTAGATCA
97294026 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97294054 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97294082 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97294095 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97301476 original size:15 final size:15
Alignment explanation
Indices: 97301456--97301490 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
97301446 TAATAGTTAA
97301456 AAGCATTGTTAAACG
1 AAGCATTGTTAAACG
97301471 AAGCATTGTTAAACG
1 AAGCATTGTTAAACG
97301486 AAGCA
1 AAGCA
97301491 CTAGTTCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (15 bp):
AAGCATTGTTAAACG
Found at i:97327259 original size:69 final size:69
Alignment explanation
Indices: 97327178--97327370 Score: 208
Period size: 71 Copynumber: 2.8 Consensus size: 69
97327168 AATTGATGAG
* * * * *
97327178 TTGTTATATTAAAAATGTCTTCATTTACGTTCGA-TTTAAATGCTTAATGTGTTGCTGTAAAGTG
1 TTGTTATCTTAAAAATGTGTTCATTTACGTT-AATTTTAAATGCTTAATGTGCTGCTGTAAAGGG
97327242 CTAAT
65 CTAAT
* * * *
97327247 TTGTTATCTTAAAAAAATGTGTTCACTCACATTAATTTTAGATGCTTAATGTGCTGCTGTAAAGG
1 TTGTTATCTT--AAAAATGTGTTCATTTACGTTAATTTTAAATGCTTAATGTGCTGCTGTAAAGG
*
97327312 GCTGAT
64 GCTAAT
* * ** * *
97327318 TTGTTGTCTTGAAAATGTGTTCATTTACGTCCATTTTATATGCTTAGTGTGCT
1 TTGTTATCTTAAAAATGTGTTCATTTACGTTAATTTTAAATGCTTAATGTGCT
97327371 TTCCAGAAAT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 44 0.43
70 1 0.01
71 57 0.56
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (69 bp):
TTGTTATCTTAAAAATGTGTTCATTTACGTTAATTTTAAATGCTTAATGTGCTGCTGTAAAGGGC
TAAT
Found at i:97328435 original size:67 final size:68
Alignment explanation
Indices: 97328294--97328445 Score: 195
Period size: 67 Copynumber: 2.2 Consensus size: 68
97328284 CATCATGTGT
* * * *
97328294 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGAGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGAGATACCATGAGGACACCATG
97328359 TAG
66 TAG
* *
97328362 ACAAGAGAGCTACGA-A-A-TAT-ATGTAGCTAGGTCGCATGCGTGATTCCAGGTGAAGGACACC
1 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGAGATACCA--TG-AGGACACC
97328423 ATGTAG
63 ATGTAG
97328429 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
97328446 TAAACTGGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
64 24 0.32
65 3 0.04
66 3 0.04
67 28 0.38
68 16 0.22
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGAGATACCATGAGGACACCATG
TAG
Found at i:97338524 original size:39 final size:39
Alignment explanation
Indices: 97338470--97338618 Score: 262
Period size: 39 Copynumber: 3.8 Consensus size: 39
97338460 TGTTCGGGTA
97338470 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
*
97338509 ATATCCAGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
97338548 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
* *
97338587 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
97338619 AGGTTACCAT
Statistics
Matches: 105, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
Found at i:97338635 original size:40 final size:40
Alignment explanation
Indices: 97338474--97338655 Score: 147
Period size: 39 Copynumber: 4.6 Consensus size: 40
97338464 CGGGTAATAT
* *** *
97338474 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * *** *
97338513 CCAGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
97338552 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
*
97338591 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACCATAA
** *
97338631 CCGGGCTGTGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
97338656 AATGAGTAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 86 0.67
40 43 0.33
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:97344224 original size:30 final size:30
Alignment explanation
Indices: 97343947--97344222 Score: 202
Period size: 30 Copynumber: 9.2 Consensus size: 30
97343937 CGACTAATGG
* *
97343947 AAAGGGATAGCTTCGATTATTGAATTATGA
1 AAAGGGATAGCTTCGACTATCGAATTATGA
** *
97343977 AAAGGGATAG-TTTTAGCTATTGAATTATGA
1 AAAGGGATAGCTTCGA-CTATCGAATTATGA
* * * *
97344007 AAATGGATAG-TGACAACCATCGAATTATGA
1 AAAGGGATAGCT-TCGACTATCGAATTATGA
* * *
97344037 AAAGGGATGGCTTCGTCTATCAAATTATGA
1 AAAGGGATAGCTTCGACTATCGAATTATGA
** **
97344067 AAATTGACGGCTTC-AGCTATCGAATTATGA
1 AAAGGGATAGCTTCGA-CTATCGAATTATGA
* *
97344097 AAAGGGATAGCTTCGGCTATCAAATTATGA
1 AAAGGGATAGCTTCGACTATCGAATTATGA
* * * * * *
97344127 AAAGGGAT-GGTGACGACCATTGAATTTTTA
1 AAAGGGATAGCT-TCGACTATCGAATTATGA
* * *
97344157 AAAGGGATGGCTTCGACTATC-AAGATATGG
1 AAAGGGATAGCTTCGACTATCGAA-TTATGA
* * *
97344187 AAAGGGGTAGCTTCAACTATCGAACTATGA
1 AAAGGGATAGCTTCGACTATCGAATTATGA
97344217 AAAGGG
1 AAAGGG
97344223 GTGGCAACAA
Statistics
Matches: 189, Mismatches: 48, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
29 7 0.04
30 176 0.93
31 6 0.03
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (30 bp):
AAAGGGATAGCTTCGACTATCGAATTATGA
Found at i:97355682 original size:30 final size:32
Alignment explanation
Indices: 97355648--97355720 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 32
97355638 TAAGATATAT
97355648 AAATAATTAATAA-ATATAT-AAT-ACAA-GTA
1 AAATAA-TAATAAGATATATGAATAACAATGTA
97355677 AAA-ATATAATAATGATATATGAATAACAATGTA
1 AAATA-ATAATAA-GATATATGAATAACAATGTA
97355710 AAATAATAATA
1 AAATAATAATA
97355721 TTTTGTGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
28 7 0.19
29 4 0.11
30 6 0.16
31 3 0.08
32 4 0.11
33 12 0.32
34 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (32 bp):
AAATAATAATAAGATATATGAATAACAATGTA
Found at i:97355713 original size:32 final size:31
Alignment explanation
Indices: 97355648--97355720 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
97355638 TAAGATATAT
97355648 AAATAATTAATAA--ATATATAATACAAGTAA
1 AAATAA-TAATAATGATATATAATACAAGTAA
97355678 AAAT-ATAATAATGATATATGAATAACAATGT-A
1 AAATAATAATAATGATATAT-AAT-ACAA-GTAA
97355710 AAATAATAATA
1 AAATAATAATA
97355721 TTTTGTGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
28 6 0.16
29 1 0.03
30 10 0.27
31 3 0.08
32 9 0.24
33 8 0.22
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATAATAATAATGATATATAATACAAGTAA
Found at i:97355753 original size:17 final size:17
Alignment explanation
Indices: 97355733--97355782 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
97355723 TTGTGAAAAG
97355733 TAATATATAATAAATAA
1 TAATATATAATAAATAA
*
97355750 TAATAAATAAT--AT-A
1 TAATATATAATAAATAA
97355764 TAATATATAATAAAATAA
1 TAATATATAAT-AAATAA
97355782 T
1 T
97355783 TTTATAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
14 11 0.41
15 2 0.07
17 12 0.44
18 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATATAATAAATAA
Found at i:97355754 original size:10 final size:10
Alignment explanation
Indices: 97355734--97355782 Score: 55
Period size: 10 Copynumber: 4.6 Consensus size: 10
97355724 TGTGAAAAGT
97355734 AATATATAATA
1 AATA-ATAATA
97355745 AATAATAATA
1 AATAATAATA
97355755 AATAAT-ATA
1 AATAATAATA
97355764 TAATATATAATAA
1 -AATA-ATAAT-A
97355777 AATAAT
1 AATAAT
97355783 TTTATAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
9 3 0.09
10 16 0.47
11 8 0.24
12 6 0.18
13 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AATAATAATA
Found at i:97355797 original size:7 final size:7
Alignment explanation
Indices: 97355733--97355800 Score: 64
Period size: 7 Copynumber: 9.0 Consensus size: 7
97355723 TTGTGAAAAG
97355733 TAATATA
1 TAATATA
97355740 TAATAAATAA
1 TAAT--AT-A
*
97355750 TAATAAA
1 TAATATA
97355757 TAATATA
1 TAATATA
97355764 TAATATA
1 TAATATA
*
97355771 TAATAAAA
1 TAAT-ATA
*
97355779 TAATTTTA
1 TAA-TATA
97355787 TAATATA
1 TAATATA
97355794 TAATATA
1 TAATATA
97355801 AAAATAAGGT
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
7 32 0.64
8 10 0.20
9 3 0.06
10 5 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
TAATATA
Found at i:97355871 original size:24 final size:24
Alignment explanation
Indices: 97355825--97355871 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
97355815 AATAAAACAA
* *
97355825 ATAATAATAAAATAATTTTTATAT
1 ATAATAATAAAATAATATATATAT
97355849 ATAATAATAGAAATAA-ATATATA
1 ATAATAATA-AAATAATATATATA
97355872 GGGTTAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (24 bp):
ATAATAATAAAATAATATATATAT
Found at i:97357695 original size:206 final size:206
Alignment explanation
Indices: 97357315--97358105 Score: 1276
Period size: 206 Copynumber: 3.8 Consensus size: 206
97357305 AAATTTGCTT
* *
97357315 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*** * * * * *
97357380 ACAAAAACCAAATCAACTATGTCTTCGATTTGGTCCTTGTAAGCACAAGGAAACCAAACCATCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * *
97357445 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTACTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
97357510 GAGACGCCAAA
196 GAGACGCCAAA
*
97357521 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
97357586 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
97357651 GGATCTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTTTTCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
97357716 GAGACGCCAAA
196 GAGACGCCAAA
* *
97357727 CTTCGATTTTTTCTATGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
97357792 GTGAAAGCCAAATCAGCTATCTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * *
97357857 GGATCTACTTCAGTACAAACATCTGAAGATTGGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
97357922 GAGATGCCAAA
196 GAGACGCCAAA
* *
97357933 CTTCGATTTGTTCTCTGACAATACAGAGATGCCGAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
97357998 GTGAAAGCCAAATCAGCTATGCCTTTGATTTGTTCCTTGTAAGCCCAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
**
97358063 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATG
97358106 CTGCGGCCTA
Statistics
Matches: 542, Mismatches: 43, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
206 542 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGACGCCAAA
Found at i:97360423 original size:31 final size:31
Alignment explanation
Indices: 97360385--97360463 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
97360375 TTTAACGGTT
*
97360385 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAACCATATC
*
97360416 ACTGGGCCGAAGCCTTTTCATAAACCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAACCATATC
*
97360447 ACTGGGTCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
97360464 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAACCATATC
Found at i:97360534 original size:42 final size:42
Alignment explanation
Indices: 97360487--97360578 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
97360477 TGGCCCATAG
* ** *
97360487 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
97360529 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
97360571 GCCCATTT
1 GCCCATTT
97360579 AGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:97360800 original size:26 final size:26
Alignment explanation
Indices: 97360711--97360871 Score: 242
Period size: 26 Copynumber: 6.3 Consensus size: 26
97360701 CTGGAGGCCT
97360711 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
97360735 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
97360760 AG-CCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
97360785 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
97360811 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
97360837 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
97360863 AGCCCTTTT
1 AGCCCTTTT
97360872 GCACTTCCTC
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
23 5 0.04
24 24 0.19
25 16 0.13
26 80 0.64
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:97360946 original size:20 final size:20
Alignment explanation
Indices: 97360921--97361007 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
97360911 TTATGAATAC
97360921 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
97360941 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
97360961 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
97360981 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
97361001 ATCATGT
1 ATCATGT
97361008 ATATCATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:97361730 original size:27 final size:27
Alignment explanation
Indices: 97361700--97361764 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
97361690 GGACATATTC
*
97361700 GTCATTTTACCATACA-AGGGTATTACG
1 GTCATTTTACCATACAGAGGCT-TTACG
* *
97361727 GTCACTTTACCCTACAGAGGCTTTACG
1 GTCATTTTACCATACAGAGGCTTTACG
*
97361754 GTCTTTTTACC
1 GTCATTTTACC
97361765 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGCTTTACG
Found at i:97361848 original size:27 final size:27
Alignment explanation
Indices: 97361818--97361915 Score: 101
Period size: 27 Copynumber: 3.6 Consensus size: 27
97361808 GTAAATCTAC
*
97361818 AAACCAAGGGTCTTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
97361845 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
97361871 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
97361901 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
97361916 TGGTAATTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
26 1 0.02
27 32 0.52
28 7 0.11
29 20 0.33
30 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:97361992 original size:81 final size:81
Alignment explanation
Indices: 97361882--97362038 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 81
97361872 GAAAGTCAAG
* ** * *
97361882 GGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACCAA-TTGAGGGTATTTCGG
1 GGTATTTCGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
97361946 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
*
97361963 GGTATTTCGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGATAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
*
97362027 TAATTTTACAAA
65 TAATTTCACAAA
97362039 TTAGGGGCAT
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.01
81 64 0.96
82 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTCGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:97362058 original size:81 final size:81
Alignment explanation
Indices: 97361906--97362100 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
97361896 TTTGTAAATC
* * * *
97361906 AGGGGTATTTTGGTAATTTTACCAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTC
97361971 GATAATTTTACAAACT
66 GATAATTTTACAAACT
* * **
97361987 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAATTAGGGGCATTT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTT
* * **
97362051 TGGTAATTTTATCCTAC-
65 CGATAATTTTA-CAAACT
** * *
97362068 AGGGGTATTTCAGTAATTTCAC-AATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTA
97362101 AAACGATAAT
Statistics
Matches: 95, Mismatches: 16, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 7 0.07
81 81 0.85
82 5 0.05
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTC
GATAATTTTACAAACT
Found at i:97362060 original size:54 final size:54
Alignment explanation
Indices: 97361905--97362061 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 54
97361895 TTTTGTAAAT
* * *
97361905 CAGGGGTATTTTGGTAATTTTACCAATT-GAGGGTATTTCGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATTAG-GGGTATTTTGGTAATTTTACAAAC
* * * *
97361959 CAGTGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAAC
* *
97362013 TAGGGGTATTTTGGTAATTTTACAAATTAGGGGCATTTTGGTAATTTTA
1 CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
97362062 TCCTACAGGG
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 88 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAAC
Found at i:97362071 original size:27 final size:26
Alignment explanation
Indices: 97361905--97362091 Score: 185
Period size: 27 Copynumber: 7.0 Consensus size: 26
97361895 TTTTGTAAAT
*
97361905 CAGGGGTATTTTGGTAATTTTACCAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** * *
97361931 TTGAGGGTATTTCGGTAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
* * *
97361958 CCAGTGGTATTTCGATAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
97361985 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
97362012 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
* * **
97362039 TTAGGGGCATTTTGGTAATTTTATCCTA
1 -CAGGGGTATTTTGGTAATTTTA-CAAA
** *
97362067 CAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
97362092 TCGAGGGTAA
Statistics
Matches: 132, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 126 0.95
28 3 0.02
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:97362072 original size:54 final size:53
Alignment explanation
Indices: 97361905--97362091 Score: 214
Period size: 54 Copynumber: 3.5 Consensus size: 53
97361895 TTTTGTAAAT
* * * *
97361905 CAGGGGTATTTTGGTAATTTTACCAATT-GAGGGTATTTCGGTAATTTCACAAA
1 CAGGGGTATTTCGGTAATTTTACAAATTAG-GGGTATTTTGGTAATTTTACAAA
* * *
97361958 CCAGTGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAA
* * **
97362012 CTAGGGGTATTTTGGTAATTTTACAAATTAGGGGCATTTTGGTAATTTTATCCTA
1 C-AGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA-CAAA
* *
97362067 CAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTCGGTAATTTTACAA
97362092 TCGAGGGTAA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 108 0.96
55 4 0.04
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (53 bp):
CAGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAA
Found at i:97362124 original size:27 final size:27
Alignment explanation
Indices: 97362090--97362287 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
97362080 GTAATTTCAC
*
97362090 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
97362117 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
97362144 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
97362171 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
97362198 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * * *
97362225 AATCAAGGGTGAACCGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * **
97362252 AATCGCGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
97362279 AATCGAGGG
1 AATCGAGGG
97362288 CATTTCAGTA
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:97362206 original size:81 final size:81
Alignment explanation
Indices: 97362090--97362287 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
97362080 GTAATTTCAC
* * * * * *
97362090 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCAAGGGT
*
97362154 AAAACGATAATTCTGTA
65 AAAACGATAATTCTATA
*
97362171 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
* *
97362236 AACCGGTAATTCTATA
66 AAACGATAATTCTATA
* *
97362252 AATCGCGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
97362288 CATTTCAGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 103 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
AAACGATAATTCTATA
Found at i:97362273 original size:54 final size:54
Alignment explanation
Indices: 97362090--97362265 Score: 255
Period size: 54 Copynumber: 3.3 Consensus size: 54
97362080 GTAATTTCAC
* *
97362090 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
*
97362144 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * **
97362198 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTGAACCGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
*
97362252 AATCGCGGGTAAAA
1 AATCGAGGGTAAAA
97362266 TGGTAATTCT
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 110 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:97362299 original size:81 final size:81
Alignment explanation
Indices: 97362133--97362307 Score: 233
Period size: 81 Copynumber: 2.2 Consensus size: 81
97362123 GGGTAAAATG
* * *
97362133 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
* *
97362198 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* * * *
97362214 GTAATTTTGTAAATCAAGGGTGAACCGGTAATTCTATAAATCGCGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
***
97362279 AATCGAGGGCATTTCA
66 AATCGAGGGCAAAACA
*
97362295 GTAATTTGGTAAA
1 GTAATTTTGTAAA
97362308 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:97369948 original size:28 final size:28
Alignment explanation
Indices: 97369902--97369970 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97369892 TTTAAAACCC
*
97369902 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97369929 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97369957 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97369971 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97371620 original size:20 final size:20
Alignment explanation
Indices: 97371597--97371634 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97371587 CACATCCAAA
*
97371597 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
97371617 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
97371635 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:97377877 original size:28 final size:28
Alignment explanation
Indices: 97377831--97377899 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97377821 TTTAAAACCC
*
97377831 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97377858 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
97377886 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
97377900 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:97379545 original size:20 final size:20
Alignment explanation
Indices: 97379522--97379559 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97379512 CACATCCAAA
*
97379522 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
97379542 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
97379560 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:97385995 original size:40 final size:40
Alignment explanation
Indices: 97385893--97386076 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
97385883 AAATTGAATG
* * * * * *
97385893 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97385933 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
97385973 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
97386013 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97386053 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
97386077 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:97386101 original size:80 final size:80
Alignment explanation
Indices: 97385933--97386121 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
97385923 GCTGGAAATT
* * *
97385933 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
97385998 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
97386013 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
97386076 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
97386093 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
97386122 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:97394086 original size:40 final size:40
Alignment explanation
Indices: 97393984--97394167 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
97393974 AAATTGAATG
* * * * * *
97393984 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97394024 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
97394064 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
97394104 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
97394144 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
97394168 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:97394192 original size:80 final size:80
Alignment explanation
Indices: 97394024--97394212 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
97394014 GCTGGAAATT
* * *
97394024 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
97394089 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
97394104 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
97394167 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
97394184 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
97394213 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:97398853 original size:19 final size:18
Alignment explanation
Indices: 97398831--97398870 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
97398821 TGAATAAAAC
97398831 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
97398850 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
97398868 TTA
1 TTA
97398871 AAACATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:97409326 original size:37 final size:37
Alignment explanation
Indices: 97409269--97409408 Score: 226
Period size: 37 Copynumber: 3.8 Consensus size: 37
97409259 CGAATAGTCC
* * * *
97409269 CCACACGTAGTTATCAGGTCTTACCCTGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
97409306 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
97409343 CCACACGTAGTCATCGGGTCTTACCAGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
97409380 CCACACGGAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
97409409 ATATATTTCC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:97409599 original size:48 final size:48
Alignment explanation
Indices: 97409534--97410124 Score: 930
Period size: 48 Copynumber: 12.3 Consensus size: 48
97409524 GGTCATTCGG
* *
97409534 CCACAATATACACATCTCCTACATATTTCACATTAGCCATTCGGCTTTA
1 CCAC-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
97409583 CCAAATATTCATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
97409631 CCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
97409679 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * * *
97409727 CCACATATACATATCTCATATATATTTCATATTAGTCATTTGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
97409775 CCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTCA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
97409823 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
97409871 CCACATATATATATCTCATACATATTTTATATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
97409919 CCACATATACATATCTCATACATACTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
97409967 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
97410015 CCACATATACATATCTCATATATATTTCACATTAGCCATTCTGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
97410063 CCACATATACATATCTCATACATATTTCACACTAGCTATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
97410111 CCACACATATATAT
1 CCACATATACATAT
97410125 ATTTATCTTG
Statistics
Matches: 498, Mismatches: 44, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
48 495 0.99
49 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:97417511 original size:39 final size:40
Alignment explanation
Indices: 97417449--97417552 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
97417439 CCGCACCAAG
* * * *
97417449 GCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AGCCACTAGCACAAAT
* * *
97417488 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATT
1 GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
*
97417528 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
97417553 ATTTCCAGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
38 1 0.02
39 23 0.43
40 30 0.56
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
Found at i:97427026 original size:28 final size:29
Alignment explanation
Indices: 97426988--97427059 Score: 112
Period size: 28 Copynumber: 2.5 Consensus size: 29
97426978 AAAATTGTAC
*
97426988 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-TTGAATACATAT
97427016 AGCACTAAGTGTGCGAGTTGAATACATAT
1 AGCACTAAGTGTGCGAGTTGAATACATAT
97427045 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97427060 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 3 0.07
28 19 0.46
29 19 0.46
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTGAATACATAT
Found at i:97430928 original size:3 final size:3
Alignment explanation
Indices: 97430910--97430988 Score: 140
Period size: 3 Copynumber: 26.3 Consensus size: 3
97430900 TTATAAGTTA
* *
97430910 AAT AAT GAT TAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97430958 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
97430989 GTTAATGGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:97431446 original size:2 final size:2
Alignment explanation
Indices: 97431439--97431466 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97431429 GTTACAAATG
97431439 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97431467 GAAATAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97436722 original size:28 final size:28
Alignment explanation
Indices: 97436684--97436790 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
97436674 GAATCATTCG
* *
97436684 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
97436712 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
97436740 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
97436768 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
97436791 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:97440210 original size:55 final size:55
Alignment explanation
Indices: 97440143--97440249 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
97440133 TCAATCTAAC
* * * * *
97440143 AGGTTCGACCACGGTTGTTAGACACGAGCGTGTCACACGCCCGTGCTGTTTTAAA
1 AGGTTCAACCACGGGTCTTACACACGAGCCTGTCACACGCCCGTGCTGTTTTAAA
* * * *
97440198 AGGTTCAACCACGGGTCTTCCACACGGGCCTGTCGCACGCCCGTGTTGTTTT
1 AGGTTCAACCACGGGTCTTACACACGAGCCTGTCACACGCCCGTGCTGTTTT
97440250 GGCAGGCTTG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (55 bp):
AGGTTCAACCACGGGTCTTACACACGAGCCTGTCACACGCCCGTGCTGTTTTAAA
Found at i:97442683 original size:55 final size:53
Alignment explanation
Indices: 97442575--97442821 Score: 206
Period size: 55 Copynumber: 4.7 Consensus size: 53
97442565 ATTAGGGTTT
* * *
97442575 AAGGATACCATGTAAGACCATG-CAAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGG-CATTGATAA-G-TTCATAAGGC
* * *
97442630 AAGGAAATCATATAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * *
97442685 AGAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATT-AGTGAGTTCATAAGGC
1 A-AGGATACCATGTAAGACCATGTCAAGACATGGCATTGA-TAAGTTCATAAGGC
* * *
97442738 AAGGATACCATGTAAGACCAGGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCAT-AAGGC
* * *
97442787 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
97442822 ATGGTAAGGT
Statistics
Matches: 159, Mismatches: 24, Indels: 24
0.77 0.12 0.12
Matches are distributed among these distances:
49 31 0.19
51 1 0.01
52 7 0.04
53 42 0.26
54 9 0.06
55 65 0.41
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:97442781 original size:108 final size:110
Alignment explanation
Indices: 97442582--97442782 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
97442572 TTTAAGGATA
* *
97442582 CCATGTAAGACCATGCAAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATATAAGA
1 CCATGTAAGACCATGCAAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATATAAGA
* *
97442647 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAGAGGTC
66 CCAGGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
* * * * *
97442692 CCATGTAAGACCATGCCAAGGCATGG-CATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCAAAGGCATGGAAATTAGTAAGGTTTC-TAAGGCAAGGAAACCATATAAG
*
97442754 ACCAGGTCAAGACATGGCAATGGTAAGTT
65 ACCAGGTCAAGACATGGCAATGATAAGTT
97442783 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 6 0.08
110 25 0.31
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCAAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATATAAGA
CCAGGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
Found at i:97443042 original size:16 final size:16
Alignment explanation
Indices: 97443021--97443051 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97443011 ATAAATTTGA
97443021 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
97443037 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
97443052 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:97447660 original size:24 final size:24
Alignment explanation
Indices: 97447631--97447791 Score: 103
Period size: 24 Copynumber: 6.6 Consensus size: 24
97447621 CAATCGATTT
97447631 CGCACACATAGTGCTATTCAAATC
1 CGCACACATAGTGCTATTCAAATC
* * * * *
97447655 CTCACACTTAGTGCCATGCTAA-C
1 CGCACACATAGTGCTATTCAAATC
* * **
97447678 CTACACACGTAGTGCCT-TAGAAATC
1 C-GCACACATAGTG-CTATTCAAATC
* **
97447703 CACACACTCATA-TTATCATTCAAATC
1 CGCACA--CATAGTGCT-ATTCAAATC
* *
97447729 AGCACACATAGTGCTATTCAATTC
1 CGCACACATAGTGCTATTCAAATC
*
97447753 CGCACACATAGTGCCATTCAAAATC
1 CGCACACATAGTGCTATTC-AAATC
*
97447778 CGCACACTTAGTGC
1 CGCACACATAGTGC
97447792 CAATGTCATT
Statistics
Matches: 103, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
23 2 0.02
24 65 0.63
25 23 0.22
26 13 0.13
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.25
Consensus pattern (24 bp):
CGCACACATAGTGCTATTCAAATC
Found at i:97454462 original size:24 final size:25
Alignment explanation
Indices: 97454435--97454498 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
97454425 ACTCAAATTA
* *
97454435 GCACACATAGTGCTATTC-AATTCC
1 GCACACATAGTGCCATTCAAAATCC
97454459 GCACACATAGTGCCATTCAAAATCC
1 GCACACATAGTGCCATTCAAAATCC
* *
97454484 ACACACTTAGTGCCA
1 GCACACATAGTGCCA
97454499 ATGTCATTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 17 0.49
25 18 0.51
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.23
Consensus pattern (25 bp):
GCACACATAGTGCCATTCAAAATCC
Found at i:97454494 original size:25 final size:24
Alignment explanation
Indices: 97454338--97454498 Score: 83
Period size: 24 Copynumber: 6.6 Consensus size: 24
97454328 ATCGATTTCG
** *
97454338 CACACATAGTGTTATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCA
* * * * * *
97454362 TACACTTAGTGCCATGCTAACCCG
1 CACACATAGTGCCATTCAAATCCA
* *
97454386 CACACGTAGTGCC-TTAGAAATCCA
1 CACACATAGTGCCATT-CAAATCCA
* * * * *
97454410 CACACTCGTATTGACACTCAAAT-TA
1 CACA--CATAGTGCCATTCAAATCCA
* * *
97454435 GCACACATAGTGCTATTCAATTCCG
1 -CACACATAGTGCCATTCAAATCCA
97454460 CACACATAGTGCCATTCAAAATCCA
1 CACACATAGTGCCATTC-AAATCCA
*
97454485 CACACTTAGTGCCA
1 CACACATAGTGCCA
97454499 ATGTCATTTC
Statistics
Matches: 99, Mismatches: 31, Indels: 13
0.69 0.22 0.09
Matches are distributed among these distances:
23 1 0.01
24 63 0.64
25 19 0.19
26 15 0.15
27 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (24 bp):
CACACATAGTGCCATTCAAATCCA
Found at i:97457365 original size:42 final size:43
Alignment explanation
Indices: 97457262--97457410 Score: 117
Period size: 42 Copynumber: 3.5 Consensus size: 43
97457252 CAATGCCGAC
* * **
97457262 GTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCAAT
* *
97457305 ATCCCAGATA-GAGTCTTACATG-AATTCAA-ATACGATGCCAAT
1 GTCCCAGACATG-GTCTTACATGTAATTCAATAT-CGATGCCAAT
* * * * **
97457347 GTCCCAGACATGGCCTTACACGTAAATCTCAA-ATCAAGGCCTGT
1 GTCCCAGACATGGTCTTACATGT-AAT-TCAATATCGATGCCAAT
*
97457391 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
97457411 CGATATCTCA
Statistics
Matches: 84, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.02
42 31 0.37
43 18 0.21
44 27 0.32
45 6 0.07
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCAAT
Found at i:97458974 original size:41 final size:41
Alignment explanation
Indices: 97458929--97459013 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 41
97458919 CCGTGTCACC
* *
97458929 CAAGTCAGTGAGTTACAC-GGCAGAGACATGGTCGTGTGTCT
1 CAAGTCAGTGAGTTACACGGGCAGAGACA-GGCCGTATGTCT
*
97458970 CAAGTCAGTGAGTTACACGGGCAGGGACAGGCCGTATGTCT
1 CAAGTCAGTGAGTTACACGGGCAGAGACAGGCCGTATGTCT
97459011 CAA
1 CAA
97459014 TTTCAAAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 31 0.77
42 9 0.22
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (41 bp):
CAAGTCAGTGAGTTACACGGGCAGAGACAGGCCGTATGTCT
Found at i:97464263 original size:46 final size:46
Alignment explanation
Indices: 97464196--97464366 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
97464186 ACCCGCCCCT
*
97464196 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAC
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAC
*
97464242 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTCAC
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATC-CAC
* * *
97464293 ----GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAC
*
97464335 AGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
97464367 ATGCTCAACA
Statistics
Matches: 108, Mismatches: 6, Indels: 22
0.79 0.04 0.16
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 1 0.01
46 59 0.55
47 28 0.26
48 1 0.01
49 1 0.01
50 4 0.04
51 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAC
Found at i:97464315 original size:93 final size:93
Alignment explanation
Indices: 97464200--97464370 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
97464190 GCCCCTAAGT
* *
97464200 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
97464265 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
97464293 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
97464358 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97464371 TCAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97464822 original size:30 final size:30
Alignment explanation
Indices: 97464788--97464847 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97464778 ATTTAATACG
97464788 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97464818 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97464848 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97474094 original size:46 final size:44
Alignment explanation
Indices: 97474027--97474190 Score: 145
Period size: 46 Copynumber: 3.6 Consensus size: 44
97474017 CCCCTAAGAG
* * *
97474027 AACTCGGACTCAACTTAACGAGCTCGAGCGTTTGCATCCACAAGT
1 AACTCGGACTCAACTCAACGAGTTCGAGCATTTGCATCCAC-AGT
* * *
97474072 AAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAC-G-
1 -AACTCGGACTCAACTCAACGAG-TTCGA-G-C-ATTTGCATC-CACAGT
* *
97474120 AACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAGGT
1 AACTCGGACTCAACTCAACGAGTTCGAG-CATTTGCATCCACA-GT
97474165 GAACTCGGACTCAACTCAACGAGTTC
1 -AACTCGGACTCAACTCAACGAGTTC
97474191 AGATGCTCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 18
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 3 0.03
46 49 0.51
47 25 0.26
48 1 0.01
49 2 0.02
50 6 0.06
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGTTCGAGCATTTGCATCCACAGT
Found at i:97474196 original size:93 final size:93
Alignment explanation
Indices: 97474026--97474196 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
97474016 GCCCCTAAGA
* * *
97474026 GAACTCGGACTCAACTTAACGAGCTCGAGCGTTTGCATCCACAAGTAAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCACAAGTAAACTCGGACTCAACTCAA
**
97474091 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
97474119 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCACAAGTAAACTCGGACTCAACTCA
97474183 ACGAGTTCAGATGC
65 ACGAGTTCAGATGC
97474197 TCAACTATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCACAAGTAAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:97474650 original size:30 final size:30
Alignment explanation
Indices: 97474616--97474675 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97474606 ATTTAATACG
97474616 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
97474646 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
97474676 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:97477880 original size:61 final size:61
Alignment explanation
Indices: 97477809--97477931 Score: 219
Period size: 61 Copynumber: 2.0 Consensus size: 61
97477799 TACCAATGAT
* *
97477809 TAAATTTGTTATTATGTCAATTTTAGAATGGCCATGTTAACCAAAAAGAACTAAAAAAGGG
1 TAAATTTGTTATTATATCAATTTTAGAACGGCCATGTTAACCAAAAAGAACTAAAAAAGGG
*
97477870 TAAATTTGTTATTATATCAATTTTAGAACGGCCATGTTAACCAAAATGAACTAAAAAAGGG
1 TAAATTTGTTATTATATCAATTTTAGAACGGCCATGTTAACCAAAAAGAACTAAAAAAGGG
97477931 T
1 T
97477932 TTAATACATA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (61 bp):
TAAATTTGTTATTATATCAATTTTAGAACGGCCATGTTAACCAAAAAGAACTAAAAAAGGG
Found at i:97479510 original size:2 final size:2
Alignment explanation
Indices: 97479489--97479611 Score: 219
Period size: 2 Copynumber: 61.0 Consensus size: 2
97479479 GCTATTATAA
* *
97479489 CT CT CT CA CAT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT C-T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
97479532 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
97479574 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
97479612 ATATATATAT
Statistics
Matches: 116, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
2 115 0.99
3 1 0.01
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:97479616 original size:2 final size:2
Alignment explanation
Indices: 97479611--97479644 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97479601 TCTCTCTCTC
97479611 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97479645 CACATATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.