Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 314 of 410
Found at i:97480135 original size:22 final size:23
Alignment explanation
Indices: 97480108--97480152 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
97480098 GGGTATCTAC
97480108 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
97480130 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
97480153 TATCATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:97480148 original size:23 final size:21
Alignment explanation
Indices: 97480105--97480168 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
97480095 AAAGGGTATC
*
97480105 TACAAATCAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
97480126 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
*
97480149 TACATATCATAT-T-TAAGAT
1 TACAAATCATATCTCTAAGAT
97480168 T
1 T
97480169 GCATATCTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.18
20 1 0.03
21 3 0.08
22 17 0.44
23 11 0.28
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97480156 original size:17 final size:17
Alignment explanation
Indices: 97480134--97480184 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
97480124 ATTACAAAAT
97480134 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
97480151 CATATCATATTTAAGATTG
1 CATATC-T-TCTAAGATTA
*
97480170 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
97480185 CATGTTTCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 14 0.50
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:97480167 original size:19 final size:21
Alignment explanation
Indices: 97480118--97480175 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
97480108 AAATCAAATC
*
97480118 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA-CT
97480141 TCTAAGATTACATATCATA-T
1 TCTAAGATTACATATCATACT
*
97480161 T-TAAGATTGCATATC
1 TCTAAGATTACATATC
97480176 TTCGAAGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
20 2 0.06
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (21 bp):
TCTAAGATTACATATCATACT
Found at i:97481636 original size:32 final size:32
Alignment explanation
Indices: 97481595--97481659 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
97481585 AGTACGGTGT
97481595 ATACCTGGATGACCAGCTCATTTGGAATCATG
1 ATACCTGGATGACCAGCTCATTTGGAATCATG
*
97481627 ATACCTGGATGGCCAGCTCATTTGGAATCATG
1 ATACCTGGATGACCAGCTCATTTGGAATCATG
97481659 A
1 A
97481660 CATTCCTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (32 bp):
ATACCTGGATGACCAGCTCATTTGGAATCATG
Found at i:97485211 original size:22 final size:23
Alignment explanation
Indices: 97485179--97485221 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
97485169 GGGTATCTAC
*
97485179 AAATCAAATC-TCTAATATTATA
1 AAATCAAATCTTCTAAGATTATA
*
97485201 AAATCATATCTTCTAAGATTA
1 AAATCAAATCTTCTAAGATTA
97485222 CATATCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTATA
Found at i:97485227 original size:17 final size:17
Alignment explanation
Indices: 97485205--97485255 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
97485195 ATTATAAAAT
97485205 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
97485222 CATATCAGATCTAAGATTA
1 CATATC--TTCTAAGATTA
*
97485241 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
97485256 CATGTTTCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.45
19 16 0.55
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:97491669 original size:38 final size:38
Alignment explanation
Indices: 97491615--97491696 Score: 128
Period size: 38 Copynumber: 2.2 Consensus size: 38
97491605 CATTCGAATG
*
97491615 TTGATTTAGGTTTAAAAGATTCGCATCCAATTTGACCA
1 TTGATTTAGGTCTAAAAGATTCGCATCCAATTTGACCA
* *
97491653 TTGATTTGGGTCTAAAAGATTCGTATCCAATTTGACCA
1 TTGATTTAGGTCTAAAAGATTCGCATCCAATTTGACCA
*
97491691 TAGATT
1 TTGATT
97491697 CACTAGGGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (38 bp):
TTGATTTAGGTCTAAAAGATTCGCATCCAATTTGACCA
Found at i:97493414 original size:21 final size:21
Alignment explanation
Indices: 97493390--97493429 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97493380 TTAACGGGAT
97493390 GCTGACATGGCAAGCTAACCA
1 GCTGACATGGCAAGCTAACCA
** *
97493411 GCTGATGTGGCAAGTTAAC
1 GCTGACATGGCAAGCTAAC
97493430 TTGCCACGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (21 bp):
GCTGACATGGCAAGCTAACCA
Found at i:97494685 original size:3 final size:3
Alignment explanation
Indices: 97494670--97494720 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
97494660 CCTCTTCTCT
* * * * *
97494670 TTC TTC TTT TTC TTC TTC TCC TCC TT- TTC TTC TTC TTC TTT TTC TTT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
97494717 TTC T
1 TTC T
97494721 CTAACCCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:97497929 original size:24 final size:25
Alignment explanation
Indices: 97497875--97497933 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
97497865 GGTTTTGATA
* *
97497875 AAATATTTTTATTTGGTATATATTT
1 AAATATTTTTATTTGATATATATCT
*
97497900 AGATATTTTTATTCT-ATAT-TATCT
1 AAATATTTTTATT-TGATATATATCT
97497924 AAATATTTTT
1 AAATATTTTT
97497934 TCCCTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 13 0.45
25 15 0.52
26 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (25 bp):
AAATATTTTTATTTGATATATATCT
Found at i:97504961 original size:21 final size:21
Alignment explanation
Indices: 97504935--97505003 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
97504925 GTATGAGGAG
*
97504935 GGCACACAGTCGTGTGACTAA
1 GGCACACAGCCGTGTGACTAA
* *
97504956 GGCACACACCCGTGTGGAGT--
1 GGCACACAGCCGTGT-GACTAA
97504976 GGCACACAGCCGTGTGACTGAA
1 GGCACACAGCCGTGTGACT-AA
97504998 -GCACAC
1 GGCACAC
97505004 CCATGTGGAC
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
19 3 0.08
20 14 0.36
21 19 0.49
22 3 0.08
ACGTcount: A:0.26, C:0.29, G:0.30, T:0.14
Consensus pattern (21 bp):
GGCACACAGCCGTGTGACTAA
Found at i:97508735 original size:72 final size:72
Alignment explanation
Indices: 97508656--97508796 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
97508646 TCTATATGTT
*
97508656 CACTCGAATATCGATTTAAAATTCTAAATTAACTTATGAATAGATTTA-ACTTTCTTACATGATT
1 CACTCGAATATCGATTTAAAATTCTAAATTAACTCATGAATAGATTTATA-TTTCTTACATGATT
97508720 CAAAATTG
65 CAAAATTG
* * ** *
97508728 CACTCGAATGTCGATTTAAAATTTTAGGTTAACTCATGTATAGATTTATATTTCTTACATGATTC
1 CACTCGAATATCGATTTAAAATTCTAAATTAACTCATGAATAGATTTATATTTCTTACATGATTC
97508793 AAAA
66 AAAA
97508797 CTTTTCTCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
72 61 0.98
73 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (72 bp):
CACTCGAATATCGATTTAAAATTCTAAATTAACTCATGAATAGATTTATATTTCTTACATGATTC
AAAATTG
Found at i:97511834 original size:26 final size:27
Alignment explanation
Indices: 97511766--97511834 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 27
97511756 ATAATATTAT
97511766 ATATTTAAATTTTTATTAGTTATATTTTA
1 ATATTTAAA-TTTTA-TAGTTATATTTTA
*
97511795 ATATTTAAA--ATATAGTTTATATTTTA
1 ATATTTAAATTTTATAG-TTATATTTTA
97511821 A-A-TTAAATTTTATA
1 ATATTTAAATTTTATA
97511835 ATTAATTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 5 0.14
25 4 0.11
26 17 0.49
29 9 0.26
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (27 bp):
ATATTTAAATTTTATAGTTATATTTTA
Found at i:97512689 original size:2 final size:2
Alignment explanation
Indices: 97512682--97512725 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
97512672 TAATAAATGC
97512682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97512724 AT
1 AT
97512726 CAAAGAATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97513243 original size:10 final size:10
Alignment explanation
Indices: 97513227--97513260 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
97513217 TGAATTTTCC
*
97513227 ATTTTAAATA
1 ATTTTAAACA
*
97513237 TTTTTAAACA
1 ATTTTAAACA
97513247 ATTTTAAACA
1 ATTTTAAACA
97513257 ATTT
1 ATTT
97513261 CACATAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTTTAAACA
Found at i:97514346 original size:29 final size:29
Alignment explanation
Indices: 97514304--97514361 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
97514294 TATCAACTTT
97514304 TCCGAAAGGAGCCAACGAATTCCCTTCCC
1 TCCGAAAGGAGCCAACGAATTCCCTTCCC
*
97514333 TCCGACAGGAGCCAACGAATTCCCTTCCC
1 TCCGAAAGGAGCCAACGAATTCCCTTCCC
97514362 AGATACGGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.40, G:0.17, T:0.17
Consensus pattern (29 bp):
TCCGAAAGGAGCCAACGAATTCCCTTCCC
Found at i:97517845 original size:19 final size:19
Alignment explanation
Indices: 97517806--97517841 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97517796 CCCAAAACGC
97517806 AAAATATTGTCTTATTTTG
1 AAAATATTGTCTTATTTTG
*
97517825 AAAATTTTGT-TTATTTT
1 AAAATATTGTCTTATTTT
97517842 TGAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (19 bp):
AAAATATTGTCTTATTTTG
Found at i:97518307 original size:27 final size:26
Alignment explanation
Indices: 97518253--97518354 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 26
97518243 AAACAATATG
*
97518253 TAAAAAAATTTAACATAAATAAAATA
1 TAAAACAATTTAACATAAATAAAATA
97518279 TAAAACAATTTGAA-ATAAAATAAAATA
1 TAAAACAATTT-AACAT-AAATAAAATA
* * * * *
97518306 TAAAGCAATTCAAAAATAGATAATATA
1 TAAAACAATT-TAACATAAATAAAATA
* * *
97518333 TGATACAATTTAAAATAAATAA
1 TAAAACAATTTAACATAAATAA
97518355 TATCTAACAT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
26 22 0.35
27 38 0.61
28 2 0.03
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (26 bp):
TAAAACAATTTAACATAAATAAAATA
Found at i:97518354 original size:26 final size:26
Alignment explanation
Indices: 97518239--97518426 Score: 112
Period size: 26 Copynumber: 7.3 Consensus size: 26
97518229 GAATGGTTCG
* * * *
97518239 AAATAAACAATATGTAAAAAAATTTA
1 AAATAAATAAAATATAAAACAATTTA
* *
97518265 ACATAAATAAAATATAAAACAATTTG
1 AAATAAATAAAATATAAAACAATTTA
* *
97518291 AAATAAAATAAAATATAAAGCAATTCAA
1 AAAT-AAATAAAATATAAAACAATT-TA
* * * *
97518319 AAATAGATAATATATGATACAATTTA
1 AAATAAATAAAATATAAAACAATTTA
* * * *
97518345 AAATAAATAATATCTAACATAATTTA
1 AAATAAATAAAATATAAAACAATTTA
* * * *
97518371 AAGTGAAT--AATATGAGACAATTTA
1 AAATAAATAAAATATAAAACAATTTA
** * *
97518395 GTATAAATAACATATAAGA-AATTTA
1 AAATAAATAAAATATAAAACAATTTA
*
97518420 AGATAAA
1 AAATAAA
97518427 ATATAAAACC
Statistics
Matches: 122, Mismatches: 36, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
24 15 0.12
25 11 0.09
26 58 0.48
27 34 0.28
28 4 0.03
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29
Consensus pattern (26 bp):
AAATAAATAAAATATAAAACAATTTA
Found at i:97520174 original size:44 final size:44
Alignment explanation
Indices: 97520066--97520472 Score: 318
Period size: 44 Copynumber: 9.0 Consensus size: 44
97520056 TTGTGACTCA
** * * * *
97520066 TAACTTTAATCTATTCCACTGCAACTTTAGGGAAATAATATTCG
1 TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* *
97520110 CTAACTTTATTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
1 -TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* * *
97520155 TAACTTTAACCTGCTCCACTGCAACTTCAGGAAGATAAGGTTTG
1 TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
** * * *
97520199 TGGCTTTAATTTGCTCCACTGCAACTTTAGGGAGATAAAATTTG
1 TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* * *
97520243 TAGCCTGTCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTG
1 TA-AC--T-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* * *
97520292 TAA-TTTCAACCTGTTCCACTGCAACTTCAGGGAGATAAGGTTTG
1 TAACTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* * * * *
97520336 TAGCTTCAATCTACTCCATTGCAACTTCAGGGAGATAAGTTTTGCCAAG
1 TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-----G
* * * * * *
97520385 ATAACTTTAATCCG-TCCCACTGTAATTTTAGGG-GTATAGGATTAG
1 -TAACTTTAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTG
** * *
97520430 TGGCTTCAATCTGCTCCACTGCATCTTCAGGGAG-TAAGATTTG
1 TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
97520473 CCATGATAGA
Statistics
Matches: 284, Mismatches: 62, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
43 7 0.02
44 166 0.58
45 43 0.15
47 1 0.00
48 2 0.01
49 37 0.13
50 28 0.10
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
TAACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
Found at i:97520311 original size:137 final size:137
Alignment explanation
Indices: 97520124--97520373 Score: 412
Period size: 137 Copynumber: 1.8 Consensus size: 137
97520114 CTTTATTCTG
97520124 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAG
* * * * *
97520189 ATAAGGTTTGTGGCTTTAATTTGCTCCACTGCAACTTTAGGGAGATAAAATTTGTAGCCTGTCTT
66 ATAAGGTTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAAATTTGTAGCCTGTCTT
97520254 CAATCTA
131 CAATCTA
* *
97520261 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAA-TTTCAACCTGTTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTT-AACCTGCTCCACTGCAACTTCAGGAA
*
97520325 GATAAGGTTTGTAGCTTCAATCTACTCCATTGCAACTTCAGGGAGATAA
65 GATAAGGTTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
97520374 GTTTTGCCAA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
136 3 0.03
137 101 0.97
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (137 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGAAG
ATAAGGTTTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAAATTTGTAGCCTGTCTT
CAATCTA
Found at i:97520531 original size:93 final size:94
Alignment explanation
Indices: 97520339--97520532 Score: 212
Period size: 93 Copynumber: 2.1 Consensus size: 94
97520329 AGGTTTGTAG
* * **
97520339 CTTCAATCTACTCCATTGCAACTTCAGGGAGATAAGTTTTGCCAAGATAACTTTAATCCGTCCCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCCAAGATAACTTTAATCCAACCCA
* * * *
97520404 CTGTAATTTTAGGGGTATAGGATTAGTGG
66 CTGCAACTTTAGAGGTATAGGATTAGTGA
* * * * **
97520433 CTTCAATCTGCTCCACTGCATCTTCAGGGAG-TAAGATTTGCCATGATAGA-TTTGATCCAACTT
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCCAAGATA-ACTTTAATCCAACCC
* * *
97520496 GCTGCAACTTTAGAGGTTTAGGATTTGTGA
65 ACTGCAACTTTAGAGGTATAGGATTAGTGA
97520526 CTTCAAT
1 CTTCAAT
97520533 GATCTGTTCC
Statistics
Matches: 82, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
93 53 0.65
94 29 0.35
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (94 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCCAAGATAACTTTAATCCAACCCA
CTGCAACTTTAGAGGTATAGGATTAGTGA
Found at i:97521224 original size:15 final size:15
Alignment explanation
Indices: 97521204--97521233 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97521194 CCCTTATTCT
97521204 TGTTAATTCAGAGAG
1 TGTTAATTCAGAGAG
97521219 TGTTAATTCAGAGAG
1 TGTTAATTCAGAGAG
97521234 GACAAGACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (15 bp):
TGTTAATTCAGAGAG
Found at i:97532220 original size:26 final size:25
Alignment explanation
Indices: 97532191--97532331 Score: 90
Period size: 27 Copynumber: 5.4 Consensus size: 25
97532181 TGTGAAAAAG
97532191 ATTTAACATAAATAAAATATAAAACA
1 ATTTAA-ATAAATAAAATATAAAACA
*
97532217 ATTTGAAATAAAATAAAATATAAAGCA
1 ATTT-AAAT-AAATAAAATATAAAACA
* * * *
97532244 ATTCAAAAATAAATAATATATGACACA
1 ATT--TAAATAAATAAAATATAAAACA
* * *
97532271 ATTTAAAGTGAAT--AATATGAGACA
1 ATTTAAA-TAAATAAAATATAAAACA
* * *
97532295 ATTTAGTATAAATAACATATAAGA-A
1 ATTTA-AATAAATAAAATATAAAACA
97532320 ATTTAAGATAAA
1 ATTTAA-ATAAA
97532332 ATATAAAACC
Statistics
Matches: 91, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
24 18 0.20
25 15 0.16
26 17 0.19
27 37 0.41
28 4 0.04
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.28
Consensus pattern (25 bp):
ATTTAAATAAATAAAATATAAAACA
Found at i:97535778 original size:38 final size:38
Alignment explanation
Indices: 97535727--97535926 Score: 296
Period size: 38 Copynumber: 5.3 Consensus size: 38
97535717 ATATTCGATG
97535727 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
97535765 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
97535803 TATAT-TGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
97535842 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA-
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
97535879 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
97535917 TATATTCGGG
1 TATATCCGGG
97535927 CTTCGTGCTA
Statistics
Matches: 147, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
37 36 0.24
38 78 0.53
39 30 0.20
40 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:97535830 original size:77 final size:75
Alignment explanation
Indices: 97535727--97535926 Score: 276
Period size: 77 Copynumber: 2.6 Consensus size: 75
97535717 ATATTCGATG
* *
97535727 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGATAAAACCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
97535792 CGTGCTGGTA
66 CGTGCTGGTA
* * **
97535802 TTATAT-TGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGG
1 -TATATCCGGG-ATAAA-ACCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGG
97535866 CTTCGTGCTGGTA
63 CTTCGTGCTGGTA
* * * *
97535879 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATATCCGGGATAAAACCCGCAGGCTTCGTGCTGGTATTATATCCGGG
97535927 CTTCGTGCTA
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
75 30 0.28
76 19 0.17
77 60 0.55
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (75 bp):
TATATCCGGGATAAAACCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
CGTGCTGGTA
Found at i:97535984 original size:42 final size:43
Alignment explanation
Indices: 97535919--97536026 Score: 188
Period size: 42 Copynumber: 2.6 Consensus size: 43
97535909 GCTGGTATTA
97535919 TATTCGGG-CTTCGTG-CTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
97535960 TATTCGGGCCTT-GTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
97536002 TATTC-GGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
97536027 GTAATGCCGT
Statistics
Matches: 64, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
41 17 0.27
42 47 0.73
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:97536422 original size:45 final size:42
Alignment explanation
Indices: 97536355--97536462 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
97536345 TTGACTTGAT
* *
97536355 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
97536400 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
97536442 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
97536463 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:97541736 original size:38 final size:38
Alignment explanation
Indices: 97541629--97541792 Score: 220
Period size: 38 Copynumber: 4.3 Consensus size: 38
97541619 ATATTCGATG
97541629 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
97541667 TATATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
97541707 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * * *
97541745 TATATTCGGGATAAATCTCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
97541783 TATATTCGGG
1 TATATCCGGG
97541793 CCTTCGTGCC
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 72 0.65
39 10 0.09
40 29 0.26
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:97542250 original size:45 final size:42
Alignment explanation
Indices: 97542183--97542290 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 42
97542173 TTGACTTGAT
* * *
97542183 TATTCAGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
97542228 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
97542270 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
97542291 ACAGGCGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 33 0.59
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:97547156 original size:21 final size:21
Alignment explanation
Indices: 97547132--97547174 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
97547122 AACGCCTATG
*
97547132 GGAAAATTAAGGAAAGAT-CAT
1 GGAAAATAAAGG-AAGATGCAT
*
97547153 GGAAACTAAAGGAAGATGCAT
1 GGAAAATAAAGGAAGATGCAT
97547174 G
1 G
97547175 AAAGATCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.49, C:0.07, G:0.28, T:0.16
Consensus pattern (21 bp):
GGAAAATAAAGGAAGATGCAT
Found at i:97550946 original size:18 final size:18
Alignment explanation
Indices: 97550902--97550940 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
97550892 TTCTTCAGGG
97550902 TATCATTCTTCTTTCTCC
1 TATCATTCTTCTTTCTCC
97550920 TATCATTCTTCTTTCTCC
1 TATCATTCTTCTTTCTCC
97550938 TAT
1 TAT
97550941 GGTTCTCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.13, C:0.31, G:0.00, T:0.56
Consensus pattern (18 bp):
TATCATTCTTCTTTCTCC
Found at i:97554625 original size:15 final size:15
Alignment explanation
Indices: 97554605--97554651 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
97554595 ATGTTTATCG
97554605 ATACTTGATAAGACA
1 ATACTTGATAAGACA
97554620 ATACTTGATAAGACA
1 ATACTTGATAAGACA
97554635 ATACTTGATAAGACA
1 ATACTTGATAAGACA
97554650 AT
1 AT
97554652 GTAAATTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (15 bp):
ATACTTGATAAGACA
Found at i:97554891 original size:16 final size:17
Alignment explanation
Indices: 97554872--97554916 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
97554862 CGGGATTTCC
97554872 TTCTTTTTCTCTCC-CT
1 TTCTTTTTCTCTCCTCT
*
97554888 TTCTTTCTC-CTTCCTCT
1 TTCTTTTTCTC-TCCTCT
97554905 TTC-TTTTCTCTC
1 TTCTTTTTCTCTC
97554917 TTTTTCGCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
15 1 0.04
16 17 0.71
17 6 0.25
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (17 bp):
TTCTTTTTCTCTCCTCT
Found at i:97560573 original size:46 final size:48
Alignment explanation
Indices: 97560506--97560634 Score: 165
Period size: 46 Copynumber: 2.7 Consensus size: 48
97560496 TGATATATGT
* * *
97560506 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATAT-ACAA
*
97560552 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACAA
* *
97560600 ACTAGTGTAAGACTTGTCTGGGACATGGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGC
97560635 TTGTTGAGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
46 35 0.48
47 2 0.03
48 28 0.38
49 8 0.11
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATATACAA
Found at i:97560712 original size:49 final size:48
Alignment explanation
Indices: 97560509--97560816 Score: 165
Period size: 49 Copynumber: 6.5 Consensus size: 48
97560499 TATATGTGCT
* * *
97560509 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCA-C-ATTATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACATCGATTATGAGAGCC
* * * * *
97560555 AGTGTAAGACATGTCTGGGACAT-GCATC-AGCCTCAAGA-TAT-ACAAACT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CATC--GATTATGA-GAGCC
* * * *
97560603 AGTGTAAGACTTGTCTGGGACATGGCATC-AGC-TTG--T-TGAGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CATCGATTATGAGAGCC
*
97560647 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAAATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGAT-TATGAGAGCC
** * * * * **
97560696 AGTGTAAGACCTGTCTGGGGTACGGCATCGGCCTCGATGTATGAAAGTG
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGAT-TATGAGAGCC
* * * * * * * **
97560745 AGTGTAAAACTTATCTGGGACATAGCATCGACTTTGA-TGTGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATTATGAGAGCC
*
97560792 AGTGTAAGACCATGTCTGGAACATG
1 AGTGTAAGACC-TGTCTGGGACATG
97560817 ACGTCAACAT
Statistics
Matches: 201, Mismatches: 46, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
44 30 0.15
45 6 0.03
46 30 0.15
47 15 0.07
48 39 0.19
49 81 0.40
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATTATGAGAGCC
Found at i:97560766 original size:142 final size:138
Alignment explanation
Indices: 97560509--97560773 Score: 313
Period size: 142 Copynumber: 1.9 Consensus size: 138
97560499 TATATGTGCT
* * *
97560509 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGACACATAATGAGAGCCAGTGTAAGACATGTCTGGG
* * * *
97560574 ACATGCATCAGCCTCAAGATATACAAACTAGTGTAAGACTTGTCTGGGACATGGCATCAGCTTGT
66 ACAGGCATCAGCCTCAAGATATACAAACTAGTGTAAAACTTATCTGGGACATAGCATCAGCTTGT
97560639 TGAGTGTC
131 TGAGTGTC
* *
97560647 AGTGTAAGACCTGTCTGGGACATGGCATC-GACATCGATAAATGAGAGCCAGTGTAAGACCTGTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGACA-C-AT-AATGAGAGCCAGTGTAAGACATGTC
* * * *
97560711 TGGGGTAC-GGCATCGGCCTC--GATGTATGAAAGTGAGTGTAAAACTTATCTGGGACATAGCAT
62 T-GGG-ACAGGCATCAGCCTCAAGATATA-CAAACT-AGTGTAAAACTTATCTGGGACATAGCAT
97560773 C
123 C
97560774 GACTTTGATG
Statistics
Matches: 106, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
138 25 0.24
139 6 0.06
140 7 0.07
141 27 0.25
142 39 0.37
143 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (138 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACACATAATGAGAGCCAGTGTAAGACATGTCTGGG
ACAGGCATCAGCCTCAAGATATACAAACTAGTGTAAAACTTATCTGGGACATAGCATCAGCTTGT
TGAGTGTC
Found at i:97567214 original size:25 final size:25
Alignment explanation
Indices: 97567158--97567214 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
97567148 ATTTAATTAA
97567158 TAAAAATTATTAATAATTCAATAAAT
1 TAAAAATTA-TAATAATTCAATAAAT
*
97567184 TGAAAAATTA-AATAATTGAATAAAAT
1 T-AAAAATTATAATAATTCAAT-AAAT
97567210 TAAAA
1 TAAAA
97567215 TTTAGGAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 14 0.50
26 6 0.21
27 8 0.29
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (25 bp):
TAAAAATTATAATAATTCAATAAAT
Found at i:97568077 original size:29 final size:30
Alignment explanation
Indices: 97568020--97568077 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
97568010 CTTTTGAAAA
* * * *
97568020 TATTTATAAAAAGAGGCACCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACAAAATTTTAT
97568050 TATTTACAAAAAGA-GCAACAAAATTTTA
1 TATTTACAAAAAGAGGCAACAAAATTTTA
97568078 AAAATAGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACAAAATTTTAT
Found at i:97571599 original size:39 final size:39
Alignment explanation
Indices: 97571490--97571712 Score: 254
Period size: 39 Copynumber: 5.6 Consensus size: 39
97571480 GCTACTCGTT
* * **
97571490 CAAATGCCTTCGGGACATAGCCCGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
*
97571529 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
*
97571569 CCAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
*
97571608 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
* ** * *
97571647 CAAATGCCTTCGGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAACCCGGAAT-TAGTAAC-TCGCA
*
97571688 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAACCCGGA
97571713 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 98 0.60
40 57 0.35
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
Found at i:97571672 original size:118 final size:119
Alignment explanation
Indices: 97571490--97571712 Score: 301
Period size: 118 Copynumber: 1.9 Consensus size: 119
97571480 GCTACTCGTT
**
97571490 CAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* * *
97571555 TTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
66 TATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* **
97571608 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
97571671 GATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
97571713 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
117 12 0.13
118 65 0.71
119 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:97579676 original size:39 final size:39
Alignment explanation
Indices: 97579567--97579789 Score: 254
Period size: 39 Copynumber: 5.6 Consensus size: 39
97579557 GCTACTCGTT
* * **
97579567 CAAATGCCTTCGGGACATAGCCCGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
*
97579606 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
*
97579646 CCAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
*
97579685 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
* ** * *
97579724 CAAATGCCTTCGGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAACCCGGAAT-TAGTAAC-TCGCA
*
97579765 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAACCCGGA
97579790 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 98 0.60
40 57 0.35
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
Found at i:97579749 original size:118 final size:119
Alignment explanation
Indices: 97579567--97579789 Score: 301
Period size: 118 Copynumber: 1.9 Consensus size: 119
97579557 GCTACTCGTT
**
97579567 CAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* * *
97579632 TTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
66 TATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* **
97579685 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
97579748 GATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
97579790 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
117 12 0.13
118 65 0.71
119 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:97585013 original size:47 final size:47
Alignment explanation
Indices: 97584943--97585073 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
97584933 CACAGTCGAT
* * *
97584943 AAGTACCTATACCATGGCCCGTAGCCCAATCAAGGTAACTTATC-CTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTC-A
* * *
97584990 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAGCTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
* *
97585037 AAATACCTATACCATGGCCCGTGGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
97585074 TTATTTGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 73 0.99
48 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
Found at i:97587891 original size:42 final size:42
Alignment explanation
Indices: 97587780--97587901 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
97587770 TACCATACTA
* * * *
97587780 ATGCTATATCCTAGATATGGTCTTACATGAGATCCCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * *
97587822 ATGCCAATAGCCCAGCTATAGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCATATCG
*
97587865 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
97587902 ACTAACCCTA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:97589594 original size:68 final size:67
Alignment explanation
Indices: 97589522--97589671 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
97589512 CATCATGTGT
* * * *
97589522 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
97589584 ATGTAG
62 ATGTAG
** * *
97589590 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
97589655 AG
66 AG
97589657 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
97589672 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:97589627 original size:64 final size:64
Alignment explanation
Indices: 97589546--97589729 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
97589536 AGACATTATG
* *
97589546 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
97589610 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
97589675 AA
63 AA
* * * *
97589677 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
97589730 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:97590820 original size:2 final size:2
Alignment explanation
Indices: 97590813--97590841 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
97590803 TCATGACATG
97590813 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97590842 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97594047 original size:68 final size:67
Alignment explanation
Indices: 97593975--97594124 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
97593965 CATCATGTGT
* * * *
97593975 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
97594037 ATGTAG
62 ATGTAG
** * *
97594043 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
97594108 AG
66 AG
97594110 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
97594125 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:97594080 original size:64 final size:64
Alignment explanation
Indices: 97593999--97594182 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
97593989 AGACATTATG
* *
97593999 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
97594063 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
97594128 AA
63 AA
* * * *
97594130 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
97594183 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:97595274 original size:2 final size:2
Alignment explanation
Indices: 97595267--97595293 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97595257 TCATGACATG
97595267 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
97595294 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97597508 original size:27 final size:27
Alignment explanation
Indices: 97597432--97597521 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
97597422 TTTAGTTTAC
* *
97597432 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
97597459 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
97597486 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
97597513 TAAAATTAC
1 TAAAATTAC
97597522 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:97597531 original size:54 final size:53
Alignment explanation
Indices: 97597432--97597537 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
97597422 TTTAGTTTAC
* *
97597432 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCC-CGATTTG
* * *
97597486 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCGATTT
97597538 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 14 0.31
54 31 0.69
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCGATTTG
Found at i:97597598 original size:27 final size:27
Alignment explanation
Indices: 97597527--97597843 Score: 395
Period size: 27 Copynumber: 11.8 Consensus size: 27
97597517 ATTACCAAAG
*
97597527 TACCC-CGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
97597553 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
97597579 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
97597606 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
97597633 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
97597660 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
97597687 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
97597714 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
97597741 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
97597768 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * ** **
97597795 TTCTCTTAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
97597822 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
97597844 AGAAATACCC
Statistics
Matches: 251, Mismatches: 39, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
26 29 0.12
27 222 0.88
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:97597852 original size:27 final size:27
Alignment explanation
Indices: 97597822--97597907 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
97597812 ATTACTATTT
*
97597822 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
97597849 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
97597876 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
97597903 TACCC
1 TACCC
97597908 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:97597870 original size:54 final size:54
Alignment explanation
Indices: 97597527--97597843 Score: 440
Period size: 54 Copynumber: 5.9 Consensus size: 54
97597517 ATTACCAAAG
* * * *
97597527 TACCC-CGATTTACAGAATTATCGTTTTACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
97597579 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
97597633 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
97597687 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
97597741 TACCCTCGATTTACAAAATTATCATTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * ** * ** *
97597795 TTCTCTTAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
97597844 AGAAATACCC
Statistics
Matches: 240, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
52 5 0.02
53 24 0.10
54 211 0.88
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:97597894 original size:54 final size:53
Alignment explanation
Indices: 97597836--97597962 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
97597826 CTCGATTTAC
* **
97597836 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
97597890 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
97597944 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
97597963 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:97597914 original size:27 final size:27
Alignment explanation
Indices: 97597836--97597934 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
97597826 CTCGATTTAC
*
97597836 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
97597863 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
97597890 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
97597917 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
97597935 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:97597947 original size:27 final size:27
Alignment explanation
Indices: 97597861--97597980 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
97597851 CCCTCAATTT
**
97597861 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
97597888 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
97597915 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
97597942 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
97597969 GTAAAATTACCA
1 GTAAAATTACCA
97597981 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:97602155 original size:29 final size:28
Alignment explanation
Indices: 97602123--97602225 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
97602113 GGGACGAGAT
* *
97602123 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
97602152 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
97602181 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
97602210 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97602226 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:97616866 original size:56 final size:56
Alignment explanation
Indices: 97616775--97616913 Score: 206
Period size: 56 Copynumber: 2.5 Consensus size: 56
97616765 AAGACCATGG
* * * * *
97616775 CTTCGATATGTGATGTACGAGTAAGACCACGTTTTATACGTTGGCATCGATTTATGA
1 CTTCGATATATG-TGTGCGAGTAAGACAACATTTTATACGTTGGCATCGATATATGA
*
97616832 CTTCGATATATGTGTGCGAGTAAGACAACATTTTATACGTTGGCATCGATATGTGA
1 CTTCGATATATGTGTGCGAGTAAGACAACATTTTATACGTTGGCATCGATATATGA
*
97616888 CTCCGATATATGTGTGCGAGTAAGAC
1 CTTCGATATATGTGTGCGAGTAAGAC
97616914 CCTGTATGGG
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
56 64 0.85
57 11 0.15
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (56 bp):
CTTCGATATATGTGTGCGAGTAAGACAACATTTTATACGTTGGCATCGATATATGA
Found at i:97616932 original size:56 final size:55
Alignment explanation
Indices: 97616778--97616943 Score: 160
Period size: 56 Copynumber: 2.9 Consensus size: 55
97616768 ACCATGGCTT
* * * * * *
97616778 CGATATGTGATGTACGAGTAAGAC-CACGTTTTATACGTTGGCATCGATTTATGACTT
1 CGATATATG-TGTGCGAGTAAGACACAC--TGTATACGTTGGCATCGATATGTGACTC
* *
97616835 CGATATATGTGTGCGAGTAAGACAACATTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGAC-ACACTGTATACGTTGGCATCGATATGTGACTC
97616891 CGATATATGTGTGCGAGTAAGAC-C-CTGTATGGGACAG-TGGCATCGATATGTGA
1 CGATATATGTGTGCGAGTAAGACACACTGTAT---AC-GTTGGCATCGATATGTGA
97616944 TTACATGTAA
Statistics
Matches: 95, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
53 4 0.04
54 1 0.01
56 79 0.83
57 9 0.09
58 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (55 bp):
CGATATATGTGTGCGAGTAAGACACACTGTATACGTTGGCATCGATATGTGACTC
Found at i:97617802 original size:2 final size:2
Alignment explanation
Indices: 97617790--97617841 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
97617780 TTGAAAATTG
*
97617790 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97617832 TA TA TA TA TA
1 TA TA TA TA TA
97617842 AAATGGCTTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:97618274 original size:2 final size:2
Alignment explanation
Indices: 97618263--97618296 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
97618253 CTTACTTATG
97618263 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97618297 GAATGCATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:97619358 original size:43 final size:43
Alignment explanation
Indices: 97619311--97619452 Score: 123
Period size: 43 Copynumber: 3.3 Consensus size: 43
97619301 TCTTACATGT
*
97619311 AATCAAATATCGATGCCACTGTCCCAGACAGGGCCTTACACAA
1 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACAA
* * * * *
97619354 AATCAAATA-CAATGTCGA-TATCCCAGACATGGTCTTACACGTA
1 AATCAAATATCGATG-CCACTGTCCCAGACAGGGTCTTACAC-AA
* *
97619397 AATCTCAA-ATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGA
1 AATC-AAATATCGATGCC-ACTGTCCCAGACAG-GGTCTTACACAA
*
97619440 AATCACATATCGA
1 AATCAAATATCGA
97619453 AAATCCTATG
Statistics
Matches: 77, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
42 24 0.31
43 28 0.36
44 25 0.32
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.22
Consensus pattern (43 bp):
AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACAA
Found at i:97633531 original size:40 final size:40
Alignment explanation
Indices: 97633476--97633717 Score: 382
Period size: 40 Copynumber: 6.0 Consensus size: 40
97633466 GATGATAACG
* *
97633476 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
97633516 GGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
97633556 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
97633596 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
97633636 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
97633676 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
97633716 GG
1 GG
97633718 TTAAAGCCCG
Statistics
Matches: 192, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:97637990 original size:55 final size:54
Alignment explanation
Indices: 97637848--97637990 Score: 133
Period size: 54 Copynumber: 2.6 Consensus size: 54
97637838 TGTGACATGG
* * * * * *
97637848 CCGTGGTTGAGCCTGCCAAAACAACACAGGCATGCGACACGCCCGTGTGGAAGA
1 CCGTGGTTGAACCTGACAAAATAACACAGGCGTGCGACACGCCCGTGTCGAACA
* * * * * * *
97637902 CCGTGGTTGAAACTGAGAAACTAGCACAAGCGTGCGACACGCTCGTGTCTAACA
1 CCGTGGTTGAACCTGACAAAATAACACAGGCGTGCGACACGCCCGTGTCGAACA
** *
97637956 CCCGTGGTTGAACCTGTTAAAATAACACGGGCGTG
1 -CCGTGGTTGAACCTGACAAAATAACACAGGCGTG
97637991 GGGATTGAAC
Statistics
Matches: 68, Mismatches: 20, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
54 41 0.60
55 27 0.40
ACGTcount: A:0.28, C:0.27, G:0.28, T:0.17
Consensus pattern (54 bp):
CCGTGGTTGAACCTGACAAAATAACACAGGCGTGCGACACGCCCGTGTCGAACA
Found at i:97644773 original size:40 final size:40
Alignment explanation
Indices: 97644661--97644813 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
97644651 GGATATAGCG
* * * * ***
97644661 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
97644701 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
97644741 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
97644781 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
97644814 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:97651464 original size:39 final size:39
Alignment explanation
Indices: 97651385--97651534 Score: 246
Period size: 39 Copynumber: 3.8 Consensus size: 39
97651375 TATGGTAGCC
* *
97651385 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
97651425 CGCACAATTGCCTTCGGGCTTAGTCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
97651464 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
97651503 CACACAATGGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
97651535 TACCCGAACA
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:97659369 original size:40 final size:40
Alignment explanation
Indices: 97659324--97659490 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
97659314 CGGAATATAA
97659324 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97659364 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
97659404 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
97659444 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
97659483 CCGGATAT
1 CCGGATAT
97659491 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97666851 original size:30 final size:29
Alignment explanation
Indices: 97666757--97666858 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
97666747 TATAGTGAAT
* * *
97666757 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
97666786 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
97666814 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
97666844 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
97666859 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:97674724 original size:30 final size:29
Alignment explanation
Indices: 97674630--97674731 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
97674620 TATAGTGAAT
* * *
97674630 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
97674659 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
97674687 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
97674717 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
97674732 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:97682918 original size:42 final size:42
Alignment explanation
Indices: 97682840--97682944 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 42
97682830 TGAGATTTAC
* *
97682840 GTGTAAGACCATGTCTGGGACATCGGCATCACATTTGATTTT
1 GTGTAAGACCATGTCTAGGACATCAGCATCACATTTGATTTT
* * * **
97682882 GTGTAAGACCTTGTCTAGGACAGT-AGCATGATATTTGATTAC
1 GTGTAAGACCATGTCTAGGACA-TCAGCATCACATTTGATTTT
* * *
97682924 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTAGGAC
97682945 GTTGGCATTG
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 50 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTAGGACATCAGCATCACATTTGATTTT
Found at i:97704579 original size:28 final size:28
Alignment explanation
Indices: 97704526--97704590 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
97704516 CCATCACAGA
* * *
97704526 AACAGTATCAGGTGGGCCTTAGCCCAAT
1 AACAGAATCAGATGGGCCTTAACCCAAT
97704554 AACAGAATCAGATGGG-CTTAAACCCAAT
1 AACAGAATCAGATGGGCCTT-AACCCAAT
97704582 -ACAGAATCA
1 AACAGAATCA
97704591 AATTAGATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 12 0.36
28 21 0.64
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.18
Consensus pattern (28 bp):
AACAGAATCAGATGGGCCTTAACCCAAT
Found at i:97705429 original size:18 final size:17
Alignment explanation
Indices: 97705399--97705432 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
97705389 TTACCCACAC
*
97705399 GGGCCCATGGGCCCATT
1 GGGCCCATCGGCCCATT
97705416 GGGCCCATACGGCCCAT
1 GGGCCCAT-CGGCCCAT
97705433 GAGATCGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.38, G:0.32, T:0.15
Consensus pattern (17 bp):
GGGCCCATCGGCCCATT
Found at i:97707970 original size:26 final size:26
Alignment explanation
Indices: 97707941--97707996 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
97707931 TTCTCCCAGA
97707941 ACTCAATCTTAAAGAACTCCCAAGTG
1 ACTCAATCTTAAAGAACTCCCAAGTG
97707967 ACTCAATCTTAAAGAACTCCCAAGTG
1 ACTCAATCTTAAAGAACTCCCAAGTG
97707993 ACTC
1 ACTC
97707997 TTTCTCTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.29, G:0.11, T:0.23
Consensus pattern (26 bp):
ACTCAATCTTAAAGAACTCCCAAGTG
Found at i:97712959 original size:38 final size:38
Alignment explanation
Indices: 97712908--97712996 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 38
97712898 GTGCTCAGGT
* *
97712908 GTGTTATCGGTTGGATTTAGCTCTCATGAGTGTCTGGC
1 GTGTTATTGGTTGGAGTTAGCTCTCATGAGTGTCTGGC
* * *
97712946 GTGTTATTAGTTGG-GTTAGCTCTTATGAGTGTTTGGC
1 GTGTTATTGGTTGGAGTTAGCTCTCATGAGTGTCTGGC
97712983 GTGTT-TTGGTTGGA
1 GTGTTATTGGTTGGA
97712997 CTATTTGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 7 0.16
37 25 0.57
38 12 0.27
ACGTcount: A:0.12, C:0.10, G:0.34, T:0.44
Consensus pattern (38 bp):
GTGTTATTGGTTGGAGTTAGCTCTCATGAGTGTCTGGC
Found at i:97722347 original size:25 final size:26
Alignment explanation
Indices: 97722296--97722348 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
97722286 CTTGAGCTCC
* *
97722296 CAAGGTGCCTCGTCGATTAATTCTTT
1 CAAGGTGACTCGTCGACTAATTCTTT
97722322 CAAGGTGACT-GTCGAGCTAATT-TTT
1 CAAGGTGACTCGTCGA-CTAATTCTTT
97722347 CA
1 CA
97722349 CCTTTTGTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (26 bp):
CAAGGTGACTCGTCGACTAATTCTTT
Found at i:97729109 original size:17 final size:16
Alignment explanation
Indices: 97729071--97729120 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
97729061 TTGTTTTAGG
*
97729071 TATTAAATTTTATA-T
1 TATTAAATTTAATATT
97729086 T-TTAAATTTGAATATT
1 TATTAAATTT-AATATT
97729102 TATTAAATTTACATATT
1 TATTAAATTTA-ATATT
97729119 TA
1 TA
97729121 AAATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 8 0.27
15 4 0.13
16 3 0.10
17 15 0.50
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
TATTAAATTTAATATT
Found at i:97730203 original size:35 final size:35
Alignment explanation
Indices: 97730163--97730231 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
97730153 AAAATTTCTT
* *
97730163 TATATATTCTTTAGAATTTTTATAATTTTTTTAAAAA
1 TATATA-T-TTTAGAATTTTTATAAATATTTTAAAAA
*
97730200 TATATATTTTGGAATTTTTATAAATATTTTAA
1 TATATATTTTAGAATTTTTATAAATATTTTAA
97730232 TTTTTAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 22 0.76
36 1 0.03
37 6 0.21
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (35 bp):
TATATATTTTAGAATTTTTATAAATATTTTAAAAA
Found at i:97730228 original size:20 final size:18
Alignment explanation
Indices: 97730203--97730265 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 18
97730193 TTAAAAATAT
97730203 ATATTTTGGAATTTTTATAA
1 ATATTTT-GAATTTTTA-AA
97730223 ATATTTT-AATTTTTAAA
1 ATATTTTGAATTTTTAAA
*
97730240 ATTATTTTGATTTTTTTAAA
1 A-TATTTTGA-ATTTTTAAA
*
97730260 AAATTT
1 ATATTT
97730266 AAAATTTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.08
18 14 0.37
19 5 0.13
20 16 0.42
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (18 bp):
ATATTTTGAATTTTTAAA
Found at i:97730241 original size:17 final size:19
Alignment explanation
Indices: 97730212--97730259 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
97730202 TATATTTTGG
97730212 AATTTTTATAAA-TATTTT
1 AATTTTTATAAATTATTTT
97730230 AATTTTTA-AAATTATTTT
1 AATTTTTATAAATTATTTT
* *
97730248 GATTTTTTTAAA
1 AATTTTTATAAA
97730260 AAATTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
AATTTTTATAAATTATTTT
Found at i:97731806 original size:21 final size:21
Alignment explanation
Indices: 97731780--97731821 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
97731770 TCTACAAGAT
97731780 AGGTTTTCAAGGAAATGGTCC
1 AGGTTTTCAAGGAAATGGTCC
97731801 AGGTTTTCAAGGAAATGGTCC
1 AGGTTTTCAAGGAAATGGTCC
97731822 CATCTTGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (21 bp):
AGGTTTTCAAGGAAATGGTCC
Found at i:97749740 original size:40 final size:40
Alignment explanation
Indices: 97749695--97749861 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
97749685 CGGAATATAA
97749695 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97749735 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
97749775 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
97749815 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
97749854 CCGGATAT
1 CCGGATAT
97749862 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97757722 original size:40 final size:40
Alignment explanation
Indices: 97757677--97757843 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
97757667 CGGAATATAA
97757677 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97757717 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
97757757 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
97757797 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
97757836 CCGGATAT
1 CCGGATAT
97757844 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97759261 original size:69 final size:71
Alignment explanation
Indices: 97759156--97759316 Score: 283
Period size: 69 Copynumber: 2.3 Consensus size: 71
97759146 GAGATGTATC
97759156 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
97759221 AGGACA
66 AGGACA
*
97759227 CCATGTAGACAAGA-AG-TACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
97759290 CGGACA
66 AGGACA
97759296 CCATGTAGAC-AGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
97759317 AGACAAATCG
Statistics
Matches: 86, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
68 3 0.03
69 63 0.73
70 6 0.07
71 14 0.16
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:97765193 original size:29 final size:29
Alignment explanation
Indices: 97765161--97765292 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
97765151 ATAGTGAATC
97765161 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97765190 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
97765220 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
97765249 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97765278 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97765293 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:97765302 original size:59 final size:59
Alignment explanation
Indices: 97765161--97765292 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
97765151 ATAGTGAATC
97765161 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
97765220 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
97765278 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97765293 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:97772755 original size:29 final size:29
Alignment explanation
Indices: 97772723--97772854 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
97772713 ATAGTGAATC
97772723 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97772752 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
97772782 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
97772811 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97772840 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97772855 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:97772864 original size:59 final size:59
Alignment explanation
Indices: 97772723--97772854 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
97772713 ATAGTGAATC
97772723 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
97772782 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
97772840 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97772855 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:97777116 original size:127 final size:126
Alignment explanation
Indices: 97776884--97777189 Score: 405
Period size: 127 Copynumber: 2.4 Consensus size: 126
97776874 CGAAAAAACG
* *
97776884 AAACCCAGCACGGTAGGACATGATTCCTCGAATTTCCAAACATCGACATTGCCTTGTTTTAGAAT
1 AAACCCAGCACGGTAGGGCATGATTCCCCGAATTTCCAAACATCGACATTGCCTTGTTTTAGAAT
* *
97776949 TTATAAAATACAAGTGAAATACTAAAGGAACATTCAATTATTTGGAACAAACCGGAAATCA
66 TTAGAAAACACAAGTGAAATACTAAAGGAACATTCAATTATTTGGAACAAACCGGAAATCA
* * * * *
97777010 AAACCCAACACGATAGGGCATGATTCCCCGAATTTCCAAACCTTGAACATTGCCTTGTTTTTGAA
1 AAACCCAGCACGGTAGGGCATGATTCCCCGAATTTCCAAACATCG-ACATTGCCTTGTTTTAGAA
* * * * * * * *
97777075 TTTGGAAAACACGAGTGAAATTCTAAAGTAATATTCGATTATTTTGAACAAACGGGAAATCA
65 TTTAGAAAACACAAGTGAAATACTAAAGGAACATTCAATTATTTGGAACAAACCGGAAATCA
* * * *
97777137 AAACCCAGCACGGTAGGGTACGATTTCCCGAATTTCCAAACATCAAACATTGC
1 AAACCCAGCACGGTAGGGCATGATTCCCCGAATTTCCAAACATC-GACATTGC
97777190 ATGAATTTTC
Statistics
Matches: 153, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
126 39 0.25
127 114 0.75
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (126 bp):
AAACCCAGCACGGTAGGGCATGATTCCCCGAATTTCCAAACATCGACATTGCCTTGTTTTAGAAT
TTAGAAAACACAAGTGAAATACTAAAGGAACATTCAATTATTTGGAACAAACCGGAAATCA
Found at i:97777685 original size:21 final size:20
Alignment explanation
Indices: 97777641--97777687 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
97777631 GATTTAAAAT
*
97777641 AAATAACATATAAAAATTTA
1 AAATAACATATAAAAATCTA
*
97777661 AAATAACATATAAAAGGTCTA
1 AAATAACATATAAAA-ATCTA
97777682 AAATAA
1 AAATAA
97777688 ATAATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (20 bp):
AAATAACATATAAAAATCTA
Found at i:97777698 original size:23 final size:21
Alignment explanation
Indices: 97777634--97777718 Score: 66
Period size: 23 Copynumber: 3.8 Consensus size: 21
97777624 ATAAAGTGAT
*
97777634 TTAAAATAAATAACATATAAAAAT
1 TTAAAATAAAT-A-ATAT-AAAAG
*
97777658 TTAAAATAACAT-ATA-AAAGG
1 TTAAAATAA-ATAATATAAAAG
97777678 TCTAAAATAAATAATATAAAAATG
1 T-TAAAATAAATAATAT-AAAA-G
*
97777702 TTAAAGTAAATAATATA
1 TTAAAATAAATAATATA
97777719 CATAAAATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
20 6 0.12
21 11 0.22
22 4 0.08
23 17 0.33
24 11 0.22
25 2 0.04
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (21 bp):
TTAAAATAAATAATATAAAAG
Found at i:97779188 original size:22 final size:23
Alignment explanation
Indices: 97779160--97779212 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
97779150 TTCGTAATAG
97779160 AAAATAAAAAATAT-AAAAT-AAA
1 AAAATAAAAAA-ATGAAAATGAAA
97779182 AAAATAAAAAAATGAAAATGAAA
1 AAAATAAAAAAATGAAAATGAAA
*
97779205 AATATAAA
1 AAAATAAA
97779213 GAGTCAACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 2 0.07
22 16 0.57
23 10 0.36
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (23 bp):
AAAATAAAAAAATGAAAATGAAA
Found at i:97779191 original size:14 final size:14
Alignment explanation
Indices: 97779155--97779184 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97779145 ATAAATTCGT
97779155 AATAGAAAATAAAA
1 AATAGAAAATAAAA
*
97779169 AATATAAAATAAAA
1 AATAGAAAATAAAA
97779183 AA
1 AA
97779185 ATAAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (14 bp):
AATAGAAAATAAAA
Found at i:97779200 original size:14 final size:13
Alignment explanation
Indices: 97779160--97779190 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
97779150 TTCGTAATAG
97779160 AAAATAAAAAATAT
1 AAAATAAAAAA-AT
97779174 AAAATAAAAAAAT
1 AAAATAAAAAAAT
97779187 AAAA
1 AAAA
97779191 AAATGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:97780416 original size:5 final size:5
Alignment explanation
Indices: 97780415--97780439 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
97780405 AATTATATTA
97780415 TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT
97780440 GTATTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:97780423 original size:12 final size:12
Alignment explanation
Indices: 97780406--97780439 Score: 54
Period size: 10 Copynumber: 3.0 Consensus size: 12
97780396 ATATCAAATA
97780406 ATTATATTATAT
1 ATTATATTATAT
97780418 ATTATA-T-TAT
1 ATTATATTATAT
97780428 ATTATATTATAT
1 ATTATATTATAT
97780440 GTATTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 9 0.45
11 2 0.10
12 9 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATATTATAT
Found at i:97780447 original size:15 final size:14
Alignment explanation
Indices: 97780406--97780447 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
97780396 ATATCAAATA
97780406 ATTATATTA--TAT
1 ATTATATTATTTAT
97780418 ATTATATTATATTAT
1 ATTATATTAT-TTAT
97780433 ATTATATGTATTTAT
1 ATTATAT-TATTTAT
97780448 CTCTATTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.35
15 14 0.54
16 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
ATTATATTATTTAT
Found at i:97781678 original size:31 final size:31
Alignment explanation
Indices: 97781638--97781710 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
97781628 AACTATGAAA
97781638 ATTTTTATTTTAGTCACAAACGTTTTAGATC
1 ATTTTTATTTTAGTCACAAACGTTTTAGATC
* ** * **
97781669 ATTTCTATTTCGGTCGCTCACGTTTTAGATC
1 ATTTTTATTTTAGTCACAAACGTTTTAGATC
97781700 ATTTTTATTTT
1 ATTTTTATTTT
97781711 GGCCACTCTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (31 bp):
ATTTTTATTTTAGTCACAAACGTTTTAGATC
Found at i:97782154 original size:24 final size:23
Alignment explanation
Indices: 97782117--97782186 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 23
97782107 ACTTTTTTAT
*
97782117 AAAAATATTTAAAAATTTAAAAG
1 AAAAATATTAAAAAATTTAAAAG
*
97782140 AAAAATATATAAAAAATTTAAAAT
1 AAAAATAT-TAAAAAATTTAAAAG
* * *
97782164 AAAAGAAATTATAAAATATAAAA
1 AAAA-ATATTAAAAAATTTAAAA
97782187 ATAGATGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 8 0.20
24 29 0.73
25 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (23 bp):
AAAAATATTAAAAAATTTAAAAG
Found at i:97782188 original size:16 final size:15
Alignment explanation
Indices: 97782146--97782188 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
97782136 AAAGAAAAAT
97782146 ATATAAAAAATTTAAA
1 ATAT-AAAAATTTAAA
*
97782162 ATAAAAGAAATTATAAA
1 ATATAA-AAATT-TAAA
97782179 ATATAAAAAT
1 ATATAAAAAT
97782189 AGATGTATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 2 0.09
16 12 0.52
17 9 0.39
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (15 bp):
ATATAAAAATTTAAA
Found at i:97782791 original size:49 final size:49
Alignment explanation
Indices: 97782715--97782822 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 49
97782705 TCAATTCAAG
* * * *
97782715 GTGGTTATACGGTCATGGGTTGAAGTATAACTAAG-GCTCCC-AGTTGACA
1 GTGGTTATGCGGTCACGAGTTGAAGTATAAC-AAGAGC-CCCTAGTTAACA
* * *
97782764 GTGGTTATGTGGTCACGAGTTGGAGTATAACACGAGCCCCTAGTTAACA
1 GTGGTTATGCGGTCACGAGTTGAAGTATAACAAGAGCCCCTAGTTAACA
97782813 GTGGTTATGC
1 GTGGTTATGC
97782823 AATCTCGGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
48 5 0.10
49 44 0.90
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGGTTATGCGGTCACGAGTTGAAGTATAACAAGAGCCCCTAGTTAACA
Found at i:97788011 original size:29 final size:29
Alignment explanation
Indices: 97787978--97788080 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
97787968 CCTTCGAGCT
** * *
97787978 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
97788007 TGCACATTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
97788036 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
97788065 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
97788081 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:97788012 original size:58 final size:58
Alignment explanation
Indices: 97787949--97788080 Score: 156
Period size: 58 Copynumber: 2.3 Consensus size: 58
97787939 AATTTAAGCC
* * * * * *
97787949 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
97788007 TGCACATTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
97788065 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
97788081 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:97795968 original size:27 final size:26
Alignment explanation
Indices: 97795918--97796049 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 26
97795908 GCGAGGCTGC
* * *
97795918 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
97795945 CAGATATTGTGGCAGAGCCTCCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
97795971 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
* *
97795998 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAA
97796025 CAGATATATGTGGCAGAGCCACCAG
1 CAGATAT-TGTGGCAGAGCCACCAG
97796050 GACGCTTCCT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 10 0.11
27 79 0.87
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:97796011 original size:54 final size:54
Alignment explanation
Indices: 97795918--97796049 Score: 187
Period size: 54 Copynumber: 2.5 Consensus size: 54
97795908 GCGAGGCTGC
* * * * *
97795918 CAGATAT-TGTGACAAAGTCACCAGATACAGATATTGTGGCAGAGCCTCCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATACAGATATCGTGGCAGAGCCACCAGAA
*
97795971 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATACAGAT-ATCGTGGCAGAGCCACCAGAA
97796025 CAGATATATGTGGCAGAGCCACCAG
1 CAGATATATGTGGCAGAGCCACCAG
97796050 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
53 12 0.17
54 59 0.83
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATACAGATATCGTGGCAGAGCCACCAGAA
Found at i:97798821 original size:2 final size:2
Alignment explanation
Indices: 97798816--97798842 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97798806 TATGTAGTTT
97798816 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
97798843 TATTACTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97800866 original size:26 final size:26
Alignment explanation
Indices: 97800835--97800942 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
97800825 TGAAATGCCC
*
97800835 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97800861 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
97800887 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
97800913 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97800939 ATCA
1 ATCA
97800943 ATTTGTCCCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97801456 original size:44 final size:44
Alignment explanation
Indices: 97801375--97801497 Score: 119
Period size: 44 Copynumber: 2.9 Consensus size: 44
97801365 ACATAGGATT
* * * * * * *
97801375 TCGATATGTGATTT-CGTGTAAGACCACGTATGTGACATTGGCG
1 TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
97801418 TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
* * *
97801462 TCATATTTGA-TTTTA--TGTAAGACCCTGTCTGGGACA
1 TC-GATTTGAGATTTACGTGTAAGACCATGTCTGGGACA
97801498 GAGGTATCGA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 20 0.29
43 12 0.18
44 30 0.44
45 6 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
TCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
Found at i:97801491 original size:42 final size:43
Alignment explanation
Indices: 97801430--97801539 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
97801420 GATTTGAGAT
* * **
97801430 TTACGTGTAAGACCATGTCTGGGACATCGGCATC-ATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGAGGCATCGATATTTGA
** *
97801472 TTTTATGTAAGACCCTGTCTGGGACAGAGGTATCGATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGAGGCATCGATATTTGA
97801515 TTACATGTAAGACCGC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
97801540 GTTGGCATTG
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 27 0.47
43 29 0.51
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACAGAGGCATCGATATTTGA
Found at i:97808968 original size:26 final size:25
Alignment explanation
Indices: 97808817--97809076 Score: 106
Period size: 26 Copynumber: 10.0 Consensus size: 25
97808807 AATTTAAAGC
97808817 AATTTAAAATAAATAATATA-TAAGA
1 AATTTAAAATAAATAATATATTAA-A
* * * *
97808842 CATTTTTTTAAAAGAAATAATATGTAAAAA
1 -A---ATTTAAAATAAATAATATAT-TAAA
* *
97808872 AATCTAAAATAAATCATATATATGAAA
1 AATTTAAAATAAAT-A-ATATATTAAA
* * *
97808899 CAGTTTAAAATATAAAAATGTA-TAAA
1 -AATTTAAAATA-AATAATATATTAAA
* *
97808925 GCAGTTTAAAATAGATAATATATTAATA
1 --AATTTAAAATAAATAATATATTAA-A
*
97808953 AATTTAAAATAAATAATAT-CTAAA
1 AATTTAAAATAAATAATATATTAAA
*
97808977 ATCATTTAAAATAAATAATATGA--AAC
1 A--ATTTAAAATAAATAATAT-ATTAAA
* * *
97809003 AGTTTAATATAAATGATATA-T-AA
1 AATTTAAAATAAATAATATATTAAA
* * *
97809026 AATTTACAATAAATAAAATAGTTTAA
1 AATTTAAAATAAATAATATA-TTAAA
* *
97809052 AA--TAAAATATATAAAACTATTAAA
1 AATTTAAAATAAATAATA-TATTAAA
97809076 A
1 A
97809077 TGAATAAATA
Statistics
Matches: 180, Mismatches: 33, Indels: 44
0.70 0.13 0.17
Matches are distributed among these distances:
23 17 0.09
24 34 0.19
25 6 0.03
26 62 0.34
27 23 0.13
28 16 0.09
29 19 0.11
30 1 0.01
31 2 0.01
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (25 bp):
AATTTAAAATAAATAATATATTAAA
Found at i:97809083 original size:42 final size:41
Alignment explanation
Indices: 97808989--97809084 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 41
97808979 CATTTAAAAT
* * *
97808989 AAATAATATGAAACAGTTTAATATAAATGATATATAAAATTTA
1 AAATAA-ATAAAATAGTTTAAAATAAA-GATATATAAAATTTA
*
97809032 CAATAAATAAAATAGTTTAAAATAAA-ATATATAAAACTATTA
1 AAATAAATAAAATAGTTTAAAATAAAGATATATAAAA-T-TTA
*
97809074 AAATGAATAAA
1 AAATAAATAAA
97809085 TAAATAACAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
40 10 0.22
41 1 0.02
42 29 0.64
43 5 0.11
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (41 bp):
AAATAAATAAAATAGTTTAAAATAAAGATATATAAAATTTA
Found at i:97810229 original size:15 final size:16
Alignment explanation
Indices: 97810204--97810236 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
97810194 ATACAAAAAG
97810204 AAATAAATAATATATA
1 AAATAAATAATATATA
97810220 AAAT-AATAATATATA
1 AAATAAATAATATATA
97810235 AA
1 AA
97810237 TGAGCTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAATAAATAATATATA
Found at i:97811329 original size:19 final size:19
Alignment explanation
Indices: 97811287--97811331 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
97811277 TTTTGTATGT
97811287 ATGAAA-AAAAGAGAATAA
1 ATGAAACAAAAGAGAATAA
*
97811305 A-AAAACAAAA-AGAATGAA
1 ATGAAACAAAAGAGAAT-AA
97811323 ATGAAACAA
1 ATGAAACAA
97811332 TAGAAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.73, C:0.04, G:0.13, T:0.09
Consensus pattern (19 bp):
ATGAAACAAAAGAGAATAA
Found at i:97812624 original size:10 final size:10
Alignment explanation
Indices: 97812609--97812692 Score: 65
Period size: 10 Copynumber: 8.5 Consensus size: 10
97812599 TGGCCACTCC
97812609 CTTTTCTTTT
1 CTTTTCTTTT
97812619 CTTTTCTTTT
1 CTTTTCTTTT
97812629 C-TTTCTTCTT
1 CTTTTCTT-TT
97812639 -TCTTTCTCTTT
1 CT-TTTCT-TTT
97812650 C-TTTC-TTT
1 CTTTTCTTTT
97812658 C-TTTCTCTTT
1 CTTTTCT-TTT
97812668 C-TTTCTCTTT
1 CTTTTCT-TTT
97812678 CTTTCTCTTTT
1 CTTT-TCTTTT
97812689 -TTTT
1 CTTTT
97812693 TATTTATATC
Statistics
Matches: 65, Mismatches: 0, Indels: 19
0.77 0.00 0.23
Matches are distributed among these distances:
8 8 0.12
9 7 0.11
10 34 0.52
11 12 0.18
12 4 0.06
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (10 bp):
CTTTTCTTTT
Found at i:97812635 original size:4 final size:4
Alignment explanation
Indices: 97812611--97812683 Score: 70
Period size: 4 Copynumber: 19.2 Consensus size: 4
97812601 GCCACTCCCT
97812611 TTTC TTTTC TTTTC TTTTC TTTC -TTC TTTC TTTC --TC TTTC TTTC TTTC
1 TTTC -TTTC -TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
97812659 TTTC --TC TTTC TTTC --TC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
97812684 CTTTTTTTTT
Statistics
Matches: 61, Mismatches: 0, Indels: 15
0.80 0.00 0.20
Matches are distributed among these distances:
2 6 0.10
3 3 0.05
4 38 0.62
5 14 0.23
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:97812635 original size:14 final size:14
Alignment explanation
Indices: 97812609--97812688 Score: 83
Period size: 16 Copynumber: 5.4 Consensus size: 14
97812599 TGGCCACTCC
97812609 CTTTTCTTTTCTTTT
1 CTTTTC-TTTCTTTT
97812624 CTTTTCTTTCTTCTTT
1 CTTTTCTTTC-T-TTT
97812640 CTTTCTCTTTC-TTT
1 CTTT-TCTTTCTTTT
97812654 C-TTTCTTTCTCTTT
1 CTTTTCTTTCT-TTT
97812668 CTTTCTCTTTCTTTCT
1 CTTT-TCTTTCTTT-T
97812684 CTTTT
1 CTTTT
97812689 TTTTTATTTA
Statistics
Matches: 57, Mismatches: 0, Indels: 16
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.11
13 2 0.04
14 12 0.21
15 12 0.21
16 19 0.33
17 6 0.11
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (14 bp):
CTTTTCTTTCTTTT
Found at i:97815704 original size:19 final size:20
Alignment explanation
Indices: 97815690--97815727 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
97815680 TGTGAAATTT
*
97815690 AATGCATATG-ATGAAATGC
1 AATGCAGATGTATGAAATGC
97815709 AATGCAGATGTATGAAATG
1 AATGCAGATGTATGAAATG
97815728 AATTCAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (20 bp):
AATGCAGATGTATGAAATGC
Done.