Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 315 of 410
Found at i:97818008 original size:53 final size:52
Alignment explanation
Indices: 97817838--97818076 Score: 179
Period size: 53 Copynumber: 4.6 Consensus size: 52
97817828 ATAAGATACA
* * *
97817838 AAACAATTTGAAATAAATAAT-T-TAAAGCAATTTAAAATAAATAATATAT-
1 AAACAATTTAAAATAAATAATATCTAAAACCATTTAAAATAAATAATATATG
* * * ** *
97817887 AAGACATTTTTTTAAAAGAAA-AATATGTAAAAAAAATCTAAAATAAATCATATATATG
1 AA-ACA---ATTTAAAATAAATAATATCT-AAAACCATTTAAAATAAAT-A-ATATATG
* * * *
97817945 AAACAGTTTAAAATATAA-AA-ATGTATAAAGCATTTTAAAATAGATAATATATG
1 AAACAATTTAAAATA-AATAATATCTA-AAACCA-TTTAAAATAAATAATATATG
97817998 AAACAATTTAAAATAAATAATATCTAAAACCATTTAAAATAAATAATATA--
1 AAACAATTTAAAATAAATAATATCTAAAACCATTTAAAATAAATAATATATG
* * * *
97818048 AAACAGTTTAATATAAATGATATATAAAA
1 AAACAATTTAAAATAAATAATATCTAAAA
97818077 TTTACAATAA
Statistics
Matches: 155, Mismatches: 20, Indels: 29
0.76 0.10 0.14
Matches are distributed among these distances:
49 2 0.01
50 28 0.18
52 22 0.14
53 39 0.25
54 22 0.14
55 30 0.19
56 1 0.01
57 9 0.06
58 2 0.01
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.31
Consensus pattern (52 bp):
AAACAATTTAAAATAAATAATATCTAAAACCATTTAAAATAAATAATATATG
Found at i:97818017 original size:26 final size:25
Alignment explanation
Indices: 97817698--97818090 Score: 198
Period size: 26 Copynumber: 15.2 Consensus size: 25
97817688 AGATGAAACA
** *
97817698 AAATAATATATAAAACAATTCGAAGT
1 AAATAATATAT-AAACAATTTAAAAT
* * *
97817724 AAACAATATATAAGA-AGTTTGAAAT
1 AAATAATATATAA-ACAATTTAAAAT
*
97817749 AAATAATATATGGAAAAAAAATTTAAAAT
1 AAATAATATAT----AAACAATTTAAAAT
*
97817778 AAATAATATA-AAAC-ATGGTTCGAAAT
1 AAATAATATATAAACAAT--TT-AAAAT
* * * * *
97817804 AAACAGTATA-AAA-AA-ATAACAC
1 AAATAATATATAAACAATTTAAAAT
* * *
97817826 AAATAAGATACAAAACAATTTGAAAT
1 AAATAATATA-TAAACAATTTAAAAT
97817852 AAATAAT-T-TAAAGCAATTTAAAAT
1 AAATAATATATAAA-CAATTTAAAAT
* *
97817876 AAATAATATATAAGACATTTTTTTAAAAG
1 AAATAATATATAA-ACA---ATTTAAAAT
* * *
97817905 AAA-AATATGTAAAAAAAATCTAAAAT
1 AAATAATA--TATAAACAATTTAAAAT
*
97817931 AAATCATATATATGAAACAGTTTAAAAT
1 AAAT-A-ATATAT-AAACAATTTAAAAT
* * *
97817959 ATAAAAATGTATAAAGCATTTTAAAAT
1 A-AATAATATATAAA-CAATTTAAAAT
*
97817986 AGATAATATATGAAACAATTTAAAAT
1 AAATAATATAT-AAACAATTTAAAAT
* *
97818012 AAATAATATCTAAAACCATTTAAAAT
1 AAATAATATAT-AAACAATTTAAAAT
* *
97818038 AAATAATATA-AAACAGTTTAATAT
1 AAATAATATATAAACAATTTAAAAT
* *
97818062 AAATGATATAT-AA-AATTTACAAT
1 AAATAATATATAAACAATTTAAAAT
97818085 AAATAA
1 AAATAA
97818091 AATAGTTTAA
Statistics
Matches: 280, Mismatches: 56, Indels: 65
0.70 0.14 0.16
Matches are distributed among these distances:
22 9 0.03
23 18 0.06
24 45 0.16
25 25 0.09
26 101 0.36
27 22 0.08
28 19 0.07
29 37 0.13
30 4 0.01
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (25 bp):
AAATAATATATAAACAATTTAAAAT
Found at i:97818076 original size:50 final size:52
Alignment explanation
Indices: 97817925--97818076 Score: 159
Period size: 50 Copynumber: 2.9 Consensus size: 52
97817915 AAAAAAAATC
* *
97817925 TAAAATAAATCATATATATGAAACAGTTTAAAATATAAA-AATGTAT-AAAGCATTT
1 TAAAATAAAT-A-ATATA-GAAACAGTTT--AATATAAATAATATATAAAACCATTT
* * * *
97817980 TAAAATAGATAATATATGAAACAATTTAAAATAAATAATATCTAAAACCA-TT
1 TAAAATAAATAATATA-GAAACAGTTTAATATAAATAATATATAAAACCATTT
*
97818032 TAAAATAAATAATATA-AAACAGTTTAATATAAATGATATATAAAA
1 TAAAATAAATAATATAGAAACAGTTTAATATAAATAATATATAAAA
97818077 TTTACAATAA
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
50 25 0.30
51 7 0.08
52 22 0.26
53 20 0.24
54 1 0.01
55 9 0.11
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (52 bp):
TAAAATAAATAATATAGAAACAGTTTAATATAAATAATATATAAAACCATTT
Found at i:97820261 original size:28 final size:28
Alignment explanation
Indices: 97820229--97820297 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
97820219 GCGTAGATCA
97820229 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
97820257 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
97820285 CGATA-TACCCCTA
1 CGAAATTACCCCTA
97820298 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:97824675 original size:18 final size:17
Alignment explanation
Indices: 97824654--97824706 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
97824644 TATCATCATA
97824654 ATCTTCATATTCATCTTT
1 ATCTTCAT-TTCATCTTT
* * *
97824672 ATCTTCATCTCGAGCTCT
1 ATCTTCATTTC-ATCTTT
97824690 ATCTTCATTTTCATCTT
1 ATCTTCA-TTTCATCTT
97824707 GTTCCTCTGT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
17 2 0.07
18 22 0.81
19 3 0.11
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.51
Consensus pattern (17 bp):
ATCTTCATTTCATCTTT
Found at i:97827714 original size:31 final size:31
Alignment explanation
Indices: 97827646--97827704 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
97827636 ATTTAACGGA
*
97827646 GAGTGACCAAAATAGAAACGGTCTAAAACAT
1 GAGTGACCAAAATAGAAACGATCTAAAACAT
* *
97827677 GAGTGACCAAAATATAAATGATCTAAAA
1 GAGTGACCAAAATAGAAACGATCTAAAA
97827705 GGTTAGTGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
GAGTGACCAAAATAGAAACGATCTAAAACAT
Found at i:97832302 original size:17 final size:17
Alignment explanation
Indices: 97832277--97832310 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97832267 TAGGGACAAA
* *
97832277 GTTAGGGTCAGGGTAAG
1 GTTAAGGTCAAGGTAAG
97832294 GTTAAGGTCAAGGTAAG
1 GTTAAGGTCAAGGTAAG
97832311 TACTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.41, T:0.24
Consensus pattern (17 bp):
GTTAAGGTCAAGGTAAG
Found at i:97833672 original size:19 final size:17
Alignment explanation
Indices: 97833645--97833705 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 17
97833635 AAACTTACCC
*
97833645 TATTGTATTAAATATAT
1 TATTATATTAAATATAT
97833662 TATTTAATATTTAAA-ATAT
1 TA-TT-ATA-TTAAATATAT
97833681 TATTA-ATTAAATATACTT
1 TATTATATTAAATATA--T
97833699 TATTATA
1 TATTATA
97833706 ATTTTACTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
15 5 0.14
16 4 0.11
17 3 0.08
18 10 0.28
19 9 0.25
20 5 0.14
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
TATTATATTAAATATAT
Found at i:97836355 original size:16 final size:16
Alignment explanation
Indices: 97836324--97836377 Score: 81
Period size: 16 Copynumber: 3.2 Consensus size: 16
97836314 TAGTGCCTAG
*
97836324 GGTTTATTGTTGGTTTAG
1 GGTTT-TTG-TGGTTTAA
97836342 GGTTTTTGTGGTTTAA
1 GGTTTTTGTGGTTTAA
97836358 GGTTTTTGTGGTTTAA
1 GGTTTTTGTGGTTTAA
97836374 GGTT
1 GGTT
97836378 AGGGTTTTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 27 0.77
17 3 0.09
18 5 0.14
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (16 bp):
GGTTTTTGTGGTTTAA
Found at i:97836884 original size:125 final size:126
Alignment explanation
Indices: 97836577--97837086 Score: 644
Period size: 126 Copynumber: 4.1 Consensus size: 126
97836567 TTGTTTTTCG
* * * * * *
97836577 TTTTCTACAGTAGTTTCTGAAAAATTAATTTTGAGAAGACAGTTTTGATAAAATAGTG-AAAAAA
1 TTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
* * *
97836641 CGCTTCAAGTAGGATACACTGTCAGCAAAAGTACT-AAAAAA------ACGTGGATGCTCT
66 CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
* * * * * *
97836695 TTTTCTATAGTAGTTTCTGGAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAATGCCAAAAA
1 TTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
*
97836760 CGCTTCAAGCAGGATGCACTGCCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
66 CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
*
97836821 TTTTCTACAGTAGTTCCT-AAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
1 TTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
* * * * *
97836885 TGCTTCAAGCAGGATGTACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGCGGACGCTCT
66 CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
* * * * *
97836946 TTTTCTACAGTAGTTTTTGAAAAAATAATTTTGACAAAATGATTCTAAAAAAATAGTGTC-AAAA
1 TTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
* ** * * *
97837010 CTACTTCAAATAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACCTGGGTGCTCT
66 C-GCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
97837072 TTTTCTACAGTAGTT
1 TTTTCTACAGTAGTT
97837087 CCTGCTTGGC
Statistics
Matches: 340, Mismatches: 42, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
118 51 0.15
119 36 0.11
120 6 0.02
125 116 0.34
126 131 0.39
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
Found at i:97836972 original size:251 final size:244
Alignment explanation
Indices: 97836577--97837090 Score: 636
Period size: 251 Copynumber: 2.1 Consensus size: 244
97836567 TTGTTTTTCG
* * * * *
97836577 TTTTCTACAGTAGTTTCTGAAAAATTAATTTTGAGAAGACAGTTTTGATAAAATAGTGAAAAAAC
1 TTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTAAAAAAATAGTGAAAAAAC
* * * *
97836642 GCTTCAAGTAGGATACACTGTCAGCAAAAGTACTAAAAAAACGTGGATGCTCTTTTTCTATAGTA
66 GCTTCAAGCAGGATACACTGTCAGCAAAAGTACTAAAAAAACGCGGACGCTCTTTTTCTACAGTA
* * * * * * *
97836707 GTTTCTGGAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAATGCCAAAAAC-GCTTCAAGCA
131 GTTTCTGAAAAAATAATTTTGACAAAACGATTATAAAAAAATAATGCC-AAAACTACTTCAAACA
* *
97836771 GGATGCACTGCCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTCT
195 AGATGCACTGCCAGCAAAATTACTGAAAAAAGCTCCCACCTGGATGCTCT
* *
97836821 TTTTCTACAGTAGTTCCT-AAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTCAAAAA
1 TTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTAAAAAAATAGTG-AAAAAA
* ** * *
97836885 TGCTTCAAGCAGGATGTACTGTCAGCAAAATTACTGAAAAAAGCTCCCATGCGGACGCTCTTTTT
65 CGCTTCAAGCAGGATACACTGTCAGCAAAAGTACT-AAAAAA------ACGCGGACGCTCTTTTT
* * * * *
97836950 CTACAGTAGTTTTTGAAAAAATAATTTTGACAAAATGATTCTAAAAAAATAGTGTCAAAACTACT
123 CTACAGTAGTTTCTGAAAAAATAATTTTGACAAAACGATTATAAAAAAATAATGCCAAAACTACT
* * *
97837015 TCAAATAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACCTGGGTGCTCT
188 TCAAACAAGATGCACTGCCAGCAAAATTACTGAAAAAAGCTCCCACCTGGATGCTCT
97837072 TTTTCTACAGTAGTTCCTG
1 TTTTCTACAGTAGTTCCTG
97837091 CTTGGCTTTA
Statistics
Matches: 227, Mismatches: 33, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
243 34 0.15
244 52 0.23
245 6 0.03
250 5 0.02
251 130 0.57
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (244 bp):
TTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAGTTCTAAAAAAATAGTGAAAAAAC
GCTTCAAGCAGGATACACTGTCAGCAAAAGTACTAAAAAAACGCGGACGCTCTTTTTCTACAGTA
GTTTCTGAAAAAATAATTTTGACAAAACGATTATAAAAAAATAATGCCAAAACTACTTCAAACAA
GATGCACTGCCAGCAAAATTACTGAAAAAAGCTCCCACCTGGATGCTCT
Found at i:97840532 original size:18 final size:18
Alignment explanation
Indices: 97840496--97840534 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
97840486 GGAAAAGGAA
* *
97840496 ACATATAAAGGTTAGGAT
1 ACATATAAAGGCTAAGAT
*
97840514 ACATATAAGGGCTAAGAT
1 ACATATAAAGGCTAAGAT
97840532 ACA
1 ACA
97840535 CCATTGGCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (18 bp):
ACATATAAAGGCTAAGAT
Found at i:97849739 original size:11 final size:12
Alignment explanation
Indices: 97849719--97849744 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97849709 TAGCCTCACA
97849719 TTTTCTTTTTTT
1 TTTTCTTTTTTT
97849731 TTTTCTTTTTTT
1 TTTTCTTTTTTT
97849743 TT
1 TT
97849745 ATAATATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:97852384 original size:6 final size:6
Alignment explanation
Indices: 97852378--97852425 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
97852368 ATATATATAT
* *
97852378 TTTTAT TTTTAA TTAT-A TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
97852425 T
1 T
97852426 ATAATCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
5 4 0.11
6 34 0.89
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:97852396 original size:18 final size:17
Alignment explanation
Indices: 97852373--97852448 Score: 75
Period size: 17 Copynumber: 4.5 Consensus size: 17
97852363 AATAAATATA
*
97852373 TATATTTTTATTTTTAAT
1 TATA-TTTTAATTTTAAT
97852391 TATATTTTAATTTTAAT
1 TATATTTTAATTTTAAT
*
97852408 TTTAATTTTAATTTTAA-
1 TAT-ATTTTAATTTTAAT
* * *
97852425 TATA-ATCAATTTTTAT
1 TATATTTTAATTTTAAT
97852441 TATATTTT
1 TATATTTT
97852449 TCAAATTGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
15 8 0.17
16 5 0.11
17 17 0.36
18 17 0.36
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (17 bp):
TATATTTTAATTTTAAT
Found at i:97852398 original size:12 final size:12
Alignment explanation
Indices: 97852381--97852449 Score: 52
Period size: 12 Copynumber: 5.6 Consensus size: 12
97852371 TATATATTTT
97852381 TATTTTTAATTA
1 TATTTTTAATTA
*
97852393 TA-TTTTAATTT
1 TATTTTTAATTA
* *
97852404 TAATTTTAATTT
1 TATTTTTAATTA
*
97852416 TAATTTTAATATAA
1 TATTTTTAAT-T-A
97852430 TCAATTTTT-ATTA
1 T--ATTTTTAATTA
97852443 TATTTTT
1 TATTTTT
97852450 CAAATTGTGT
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
11 16 0.33
12 21 0.43
13 3 0.06
14 2 0.04
15 2 0.04
16 5 0.10
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTTTTAATTA
Found at i:97860686 original size:15 final size:16
Alignment explanation
Indices: 97860663--97860692 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97860653 AATTTTGATT
97860663 AAGTATTAATTAATTA
1 AAGTATTAATTAATTA
97860679 AAGT-TTAATTAATT
1 AAGTATTAATTAATT
97860693 TAATTAGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (16 bp):
AAGTATTAATTAATTA
Found at i:97864210 original size:13 final size:13
Alignment explanation
Indices: 97864192--97864216 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97864182 GTAAAGTAGT
97864192 TAAAAATCCAGAG
1 TAAAAATCCAGAG
97864205 TAAAAATCCAGA
1 TAAAAATCCAGA
97864217 ACAATCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
TAAAAATCCAGAG
Found at i:97867792 original size:15 final size:15
Alignment explanation
Indices: 97867772--97867803 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
97867762 CTCTACAGCT
97867772 CAAAGCATCAGCCAA
1 CAAAGCATCAGCCAA
97867787 CAAAGCATCAGCCAA
1 CAAAGCATCAGCCAA
97867802 CA
1 CA
97867804 CATTGGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.34, G:0.12, T:0.06
Consensus pattern (15 bp):
CAAAGCATCAGCCAA
Found at i:97870095 original size:24 final size:24
Alignment explanation
Indices: 97870063--97870123 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
97870053 AATCTCAAAT
97870063 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
97870087 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
97870111 GCACTATGTGTGC
1 GCACTATGTGTGC
97870124 AAACATAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:97874734 original size:80 final size:80
Alignment explanation
Indices: 97874650--97874798 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
97874640 TATGGTAACC
* * * *
97874650 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
97874714 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
97874730 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
97874795 CCGG
66 CCGG
97874799 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:97874740 original size:40 final size:38
Alignment explanation
Indices: 97874691--97874798 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
97874681 ATCACGATTT
*
97874691 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
97874731 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
97874771 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
97874799 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:97878192 original size:54 final size:54
Alignment explanation
Indices: 97878130--97878238 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
97878120 TATGTTAGGG
97878130 CCTTGGCCCATATCAGATACAAATGCATATACAGTAAATCAGAGTCCTACCCAC
1 CCTTGGCCCATATCAGATACAAATGCATATACAGTAAATCAGAGTCCTACCCAC
*
97878184 CCTTGGCCCATATCAGATACAAATGCATATATAGTAAATCAGAGTCCTACCCAC
1 CCTTGGCCCATATCAGATACAAATGCATATACAGTAAATCAGAGTCCTACCCAC
97878238 C
1 C
97878239 AGCCTCTACA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (54 bp):
CCTTGGCCCATATCAGATACAAATGCATATACAGTAAATCAGAGTCCTACCCAC
Found at i:97882274 original size:20 final size:20
Alignment explanation
Indices: 97882238--97882275 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
97882228 ATATTCGATA
*
97882238 AACATGAAATATTCATTTCC
1 AACATGAAACATTCATTTCC
97882258 AACAT-AAACATTACATTT
1 AACATGAAACATT-CATTT
97882276 ATGTATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (20 bp):
AACATGAAACATTCATTTCC
Found at i:97887709 original size:36 final size:36
Alignment explanation
Indices: 97887662--97887735 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
97887652 TTTACTTATT
97887662 TTTCTTTAACTTTTTAATTAAATAACTTAATTAACC
1 TTTCTTTAACTTTTTAATTAAATAACTTAATTAACC
*
97887698 TTTCTTTAACTTTTTAATTAAATTACTTAATTAACC
1 TTTCTTTAACTTTTTAATTAAATAACTTAATTAACC
97887734 TT
1 TT
97887736 ACATTTTAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.53
Consensus pattern (36 bp):
TTTCTTTAACTTTTTAATTAAATAACTTAATTAACC
Found at i:97924335 original size:40 final size:40
Alignment explanation
Indices: 97924238--97924361 Score: 108
Period size: 40 Copynumber: 3.1 Consensus size: 40
97924228 CAACAACAAA
* * *
97924238 TCGACTATGTTTGGCACTTAGTGTGCGTTTAGAGATAGCT
1 TCGACTATATATGGCACTTAGTGTGCGATTAGAGATAGCT
* * * * * *
97924278 TCGGCTGTAAATAGCACTTAGTGTGTGAATTGGA-ATAGCT
1 TCGACTATATATGGCACTTAGTGTGCG-ATTAGAGATAGCT
* *
97924318 TCGACTATATGTGGCACTAAGTGTGCGATACTA-AGATAGCT
1 TCGACTATATATGGCACTTAGTGTGCGAT--TAGAGATAGCT
97924359 TCG
1 TCG
97924362 GTTTAATGTG
Statistics
Matches: 63, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
39 2 0.03
40 47 0.75
41 14 0.22
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (40 bp):
TCGACTATATATGGCACTTAGTGTGCGATTAGAGATAGCT
Found at i:97927147 original size:24 final size:23
Alignment explanation
Indices: 97927092--97927205 Score: 108
Period size: 24 Copynumber: 4.9 Consensus size: 23
97927082 GCTGGTGAAC
* *
97927092 AGTAAGCTC-TATTGAGCTGAAACG
1 AGTAAGCTCTTA-CGAGCT-AAAAG
*
97927116 A-TAAGCTCTGACGAGCTAAGAAG
1 AGTAAGCTCTTACGAGCTAA-AAG
97927139 AGTAAGCTCTTACGAGCTAAAATG
1 AGTAAGCTCTTACGAGCTAAAA-G
** *
97927163 -GTAAGCTCCAACGAGCTGAAAAC
1 AGTAAGCTCTTACGAGCT-AAAAG
97927186 AGTAAGCTCTTACGAGCTAA
1 AGTAAGCTCTTACGAGCTAA
97927206 TATATCGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 13
0.77 0.09 0.13
Matches are distributed among these distances:
22 2 0.03
23 34 0.45
24 39 0.52
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (23 bp):
AGTAAGCTCTTACGAGCTAAAAG
Found at i:97927156 original size:47 final size:47
Alignment explanation
Indices: 97927089--97927205 Score: 139
Period size: 47 Copynumber: 2.5 Consensus size: 47
97927079 TGAGCTGGTG
* * **
97927089 AACAGTAAGCTC-TATTGAGCTGAAACGATAAGCTCTGACGAGCT-AA
1 AACAGTAAGCTCTTA-CGAGCTAAAACGATAAGCTCCAACGAGCTGAA
* * *
97927135 GAAGAGTAAGCTCTTACGAGCTAAAATGGTAAGCTCCAACGAGCTGAA
1 -AACAGTAAGCTCTTACGAGCTAAAACGATAAGCTCCAACGAGCTGAA
97927183 AACAGTAAGCTCTTACGAGCTAA
1 AACAGTAAGCTCTTACGAGCTAA
97927206 TATATCGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 56 0.93
48 4 0.07
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (47 bp):
AACAGTAAGCTCTTACGAGCTAAAACGATAAGCTCCAACGAGCTGAA
Found at i:97927569 original size:30 final size:30
Alignment explanation
Indices: 97927535--97927596 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
97927525 AACTTATTTA
*
97927535 ATTAACTATTTATTCAATTTAGTCCAAAAT
1 ATTAACTATTTATGCAATTTAGTCCAAAAT
97927565 ATTAACTATTTATGCAATTTAGTCCAAAAT
1 ATTAACTATTTATGCAATTTAGTCCAAAAT
97927595 AT
1 AT
97927597 ACTTTAGGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.13, G:0.05, T:0.42
Consensus pattern (30 bp):
ATTAACTATTTATGCAATTTAGTCCAAAAT
Found at i:97930989 original size:64 final size:64
Alignment explanation
Indices: 97930908--97931091 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
97930898 AGACATTATG
* * * *
97930908 ATGTAGCTAGGTAGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
97930972 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
97931037 AA
63 AA
* * *
97931039 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
97931092 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 22 0.22
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:97932185 original size:2 final size:2
Alignment explanation
Indices: 97932178--97932202 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97932168 TCATGACATG
97932178 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97932203 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97938192 original size:10 final size:10
Alignment explanation
Indices: 97938165--97938221 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
97938155 TTAAATTCTA
97938165 AAAGATAAAT
1 AAAGATAAAT
97938175 ATAA-ATAAAT
1 A-AAGATAAAT
*
97938185 AAAGATAATT
1 AAAGATAAAT
97938195 AAAGATAAAT
1 AAAGATAAAT
*
97938205 GAAGA-AAA-
1 AAAGATAAAT
*
97938213 AAAGCTAAA
1 AAAGATAAA
97938222 ATTAAATCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 3 0.08
9 8 0.21
10 26 0.67
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.19
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:97938496 original size:32 final size:32
Alignment explanation
Indices: 97938455--97938517 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
97938445 GATAAAAAGC
97938455 CATAAATAGCTCAAATTAGTAGGATCATACTT
1 CATAAATAGCTCAAATTAGTAGGATCATACTT
97938487 CATAAATAGCTCAAATTAGTAGGATCATACT
1 CATAAATAGCTCAAATTAGTAGGATCATACT
97938518 CCAAATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (32 bp):
CATAAATAGCTCAAATTAGTAGGATCATACTT
Found at i:97941380 original size:7 final size:7
Alignment explanation
Indices: 97941361--97941436 Score: 56
Period size: 7 Copynumber: 11.0 Consensus size: 7
97941351 ATCTAAACAA
97941361 AATAAAGT
1 AATAAA-T
97941369 AATAAAT
1 AATAAAT
97941376 AAT-AA-
1 AATAAAT
97941381 AATAAAAT
1 AAT-AAAT
97941389 AACGT-AAT
1 AA--TAAAT
97941397 AAATAAAT
1 -AATAAAT
97941405 AATAAAT
1 AATAAAT
97941412 AATAAA-
1 AATAAAT
*
97941418 AATAAAG
1 AATAAAT
97941425 AA-AAAT
1 AATAAAT
97941431 AA-AAAT
1 AATAAAT
97941437 TTGGTTGCCT
Statistics
Matches: 59, Mismatches: 1, Indels: 18
0.76 0.01 0.23
Matches are distributed among these distances:
5 3 0.05
6 17 0.29
7 22 0.37
8 14 0.24
9 2 0.03
10 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (7 bp):
AATAAAT
Found at i:97941387 original size:25 final size:24
Alignment explanation
Indices: 97941359--97941434 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 24
97941349 TTATCTAAAC
97941359 AAAATAAAGTAATAAATAATAAAAT
1 AAAATAAAGTAATAAATAA-AAAAT
* *
97941384 AAAATAACGTAATAAATAAATAAT
1 AAAATAAAGTAATAAATAAAAAAT
*
97941408 AAATAATAAA--AATAAA-GAAAAAT
1 -AA-AATAAAGTAATAAATAAAAAAT
97941431 AAAA
1 AAAA
97941435 ATTTGGTTGC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 5 0.11
24 10 0.23
25 20 0.45
26 5 0.11
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (24 bp):
AAAATAAAGTAATAAATAAAAAAT
Found at i:97941428 original size:10 final size:10
Alignment explanation
Indices: 97941369--97941433 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 10
97941359 AAAATAAAGT
97941369 AATAAATAATA
1 AATAAA-AATA
97941380 AA-ATAAAATA
1 AATA-AAAATA
*
97941390 ACGTAATAAATA
1 A-ATAA-AAATA
97941402 AATAATAAAT-
1 AATAA-AAATA
97941412 AATAAAAATA
1 AATAAAAATA
*
97941422 AAGAAAAATA
1 AATAAAAATA
97941432 AA
1 AA
97941434 AATTTGGTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
9 4 0.09
10 22 0.48
11 13 0.28
12 7 0.15
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.22
Consensus pattern (10 bp):
AATAAAAATA
Found at i:97944951 original size:30 final size:30
Alignment explanation
Indices: 97944909--97944974 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
97944899 TTAACGCATA
97944909 TTCATT-CATAATCTCATTTCTCTCTAACT
1 TTCATTCCATAATCTCATTTCTCTCTAACT
* *
97944938 TTGATTCCATAATCTCATTTCTCTCTAGCT
1 TTCATTCCATAATCTCATTTCTCTCTAACT
97944968 TTCATTC
1 TTCATTC
97944975 TTTTCCACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 5 0.15
30 28 0.85
ACGTcount: A:0.21, C:0.27, G:0.03, T:0.48
Consensus pattern (30 bp):
TTCATTCCATAATCTCATTTCTCTCTAACT
Found at i:97945042 original size:26 final size:26
Alignment explanation
Indices: 97945006--97945057 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
97944996 CTATTTAGCT
97945006 AAGTAATTCCAAGAGAAAAATCTTTC
1 AAGTAATTCCAAGAGAAAAATCTTTC
97945032 AAGTAATTCCAAGAGAAAAATCTTTC
1 AAGTAATTCCAAGAGAAAAATCTTTC
97945058 TCTTGGCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (26 bp):
AAGTAATTCCAAGAGAAAAATCTTTC
Found at i:97953787 original size:114 final size:113
Alignment explanation
Indices: 97953588--97953815 Score: 393
Period size: 114 Copynumber: 2.0 Consensus size: 113
97953578 TCAATTACTG
* *
97953588 AGGAGTATTGTTAGGCATAAGGCTTCAAATTAAGTTTGAGGGTGGTAAAACCCGTTAGTTGGAAC
1 AGGAGTATTGTTAGGCATAAAGCTTCAAATTAAGTTTGAGGGTGGTAAAACCCGTTAGTAGGAAC
97953653 GATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAAGATTATTGA
66 GATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAAGATTATTGA
* *
97953701 AGGAGTATTGTTGGGCATAAAGCTTCAAATTAAGTTTGGGGGGTGGTAAAACCCGTTAGTAGGAA
1 AGGAGTATTGTTAGGCATAAAGCTTCAAATTAAGTTT-GAGGGTGGTAAAACCCGTTAGTAGGAA
* *
97953766 GGATGTACCTCGACAGGATCCAAGACAAAGTTAGGGTTAAGATTATTGA
65 CGATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAAGATTATTGA
97953815 A
1 A
97953816 CCTAAAAATT
Statistics
Matches: 108, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
113 35 0.32
114 73 0.68
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (113 bp):
AGGAGTATTGTTAGGCATAAAGCTTCAAATTAAGTTTGAGGGTGGTAAAACCCGTTAGTAGGAAC
GATGTACCTCGAAAGGATCCAAGACAAAGTTAGGGTTAAGATTATTGA
Found at i:97958082 original size:36 final size:36
Alignment explanation
Indices: 97958039--97958109 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
97958029 TCGTTAGTTA
97958039 ACATACGATGGATAATTTGATGGTTTTATTTTGTTG
1 ACATACGATGGATAATTTGATGGTTTTATTTTGTTG
97958075 ACATACGATGGATAATTTGATGGTTTTATTTTGTT
1 ACATACGATGGATAATTTGATGGTTTTATTTTGTT
97958110 AGATCTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.48
Consensus pattern (36 bp):
ACATACGATGGATAATTTGATGGTTTTATTTTGTTG
Found at i:97959115 original size:48 final size:49
Alignment explanation
Indices: 97959020--97959118 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 49
97959010 AAAGAGGTGA
* *
97959020 CAGAGAAAACGAAAGAAAAAGAGACTGGATTGAAAAATGTTGAAGACGATG
1 CAGAGAAAACGAAAGAAAAAGAGACAGG--TGAAAAATGTTAAAGACGATG
*
97959071 CAGAGAAAACGAAAGAGAAAGTAG-CAGG-GAAAAATGTTAAAGACGATG
1 CAGAGAAAACGAAAGAAAAAG-AGACAGGTGAAAAATGTTAAAGACGATG
97959119 GTGAATAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
48 19 0.43
51 23 0.52
52 2 0.05
ACGTcount: A:0.52, C:0.08, G:0.28, T:0.12
Consensus pattern (49 bp):
CAGAGAAAACGAAAGAAAAAGAGACAGGTGAAAAATGTTAAAGACGATG
Found at i:97964988 original size:19 final size:18
Alignment explanation
Indices: 97964953--97965007 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
97964943 AATAAAAATA
97964953 TTCCTAGAATAAAATTTATC
1 TTCCTA-AAT-AAATTTATC
97964973 TTCCTAAATAAGATTTATC
1 TTCCTAAATAA-ATTTATC
*
97964992 TACCTAAATAAATTTA
1 TTCCTAAATAAATTTA
97965008 AAATATATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 7 0.21
19 20 0.61
20 6 0.18
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (18 bp):
TTCCTAAATAAATTTATC
Found at i:97972163 original size:3 final size:3
Alignment explanation
Indices: 97972155--97972195 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
97972145 TGTTTATTCA
97972155 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
97972196 AACCTTCTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:97975077 original size:49 final size:49
Alignment explanation
Indices: 97975005--97975098 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
97974995 CGCCTTACAC
* *
97975005 ACATAAAGCTCGCTAATGAGACTTCATAGATGTAGTATCAAAATACAGA
1 ACATAAAGCTCACTAATGAGACTTCATAGATGTACTATCAAAATACAGA
*
97975054 ACATAAAGCTCACTGATGAGACTTCATAGATGTACTATCAAAATA
1 ACATAAAGCTCACTAATGAGACTTCATAGATGTACTATCAAAATA
97975099 GATATTTAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.26
Consensus pattern (49 bp):
ACATAAAGCTCACTAATGAGACTTCATAGATGTACTATCAAAATACAGA
Found at i:97978189 original size:25 final size:25
Alignment explanation
Indices: 97978161--97978231 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
97978151 ATTTTTTTCG
* *
97978161 AAATTTTATTAGAGGTAAAATCGTC
1 AAATTTTATCAGAGGTAAAATCATC
* * *
97978186 AAATTTTATCGGGGGTAAAATCATT
1 AAATTTTATCAGAGGTAAAATCATC
*
97978211 AAATTTTACCAG-GAGTAAAAT
1 AAATTTTATCAGAG-GTAAAAT
97978232 TGTTAAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (25 bp):
AAATTTTATCAGAGGTAAAATCATC
Found at i:97978237 original size:25 final size:25
Alignment explanation
Indices: 97978175--97978238 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
97978165 TTTATTAGAG
* * * *
97978175 GTAAAATCGTCAAATTTTATCGGGG
1 GTAAAATCGTTAAATTTTACCAGGA
*
97978200 GTAAAATCATTAAATTTTACCAGGA
1 GTAAAATCGTTAAATTTTACCAGGA
*
97978225 GTAAAATTGTTAAA
1 GTAAAATCGTTAAA
97978239 AAATTTATTG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (25 bp):
GTAAAATCGTTAAATTTTACCAGGA
Found at i:97979417 original size:49 final size:49
Alignment explanation
Indices: 97979345--97979447 Score: 206
Period size: 49 Copynumber: 2.1 Consensus size: 49
97979335 CTATTTTACA
97979345 TATATGTTATTCTTTTTCTTTTCCCATTTTTGACTTTCCCTCTTTCCTC
1 TATATGTTATTCTTTTTCTTTTCCCATTTTTGACTTTCCCTCTTTCCTC
97979394 TATATGTTATTCTTTTTCTTTTCCCATTTTTGACTTTCCCTCTTTCCTC
1 TATATGTTATTCTTTTTCTTTTCCCATTTTTGACTTTCCCTCTTTCCTC
97979443 TATAT
1 TATAT
97979448 TTTTCCCTCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.12, C:0.25, G:0.04, T:0.59
Consensus pattern (49 bp):
TATATGTTATTCTTTTTCTTTTCCCATTTTTGACTTTCCCTCTTTCCTC
Found at i:97979670 original size:18 final size:18
Alignment explanation
Indices: 97979649--97979683 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
97979639 AAATGTTTCT
97979649 TTTCAACCT-TTTTTTTTG
1 TTTC-ACCTATTTTTTTTG
97979667 TTTCACCTATTTTTTTT
1 TTTCACCTATTTTTTTT
97979684 AAATTCCCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.11, C:0.17, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTCACCTATTTTTTTTG
Found at i:97979679 original size:17 final size:18
Alignment explanation
Indices: 97979649--97979682 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
97979639 AAATGTTTCT
*
97979649 TTTCAACCTTTTTTTTTG
1 TTTCAACCTATTTTTTTG
97979667 TTTC-ACCTATTTTTTT
1 TTTCAACCTATTTTTTT
97979683 TAAATTCCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.18, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTCAACCTATTTTTTTG
Found at i:97983104 original size:58 final size:58
Alignment explanation
Indices: 97983032--97983152 Score: 242
Period size: 58 Copynumber: 2.1 Consensus size: 58
97983022 CGTAAAATCG
97983032 GTGTTCTATTAGCTAAAGATGTCTAATAGCTATAGAAATTTAAAGTAGAGGTCCTTAA
1 GTGTTCTATTAGCTAAAGATGTCTAATAGCTATAGAAATTTAAAGTAGAGGTCCTTAA
97983090 GTGTTCTATTAGCTAAAGATGTCTAATAGCTATAGAAATTTAAAGTAGAGGTCCTTAA
1 GTGTTCTATTAGCTAAAGATGTCTAATAGCTATAGAAATTTAAAGTAGAGGTCCTTAA
97983148 GTGTT
1 GTGTT
97983153 AATTAGCCCA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 63 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.36
Consensus pattern (58 bp):
GTGTTCTATTAGCTAAAGATGTCTAATAGCTATAGAAATTTAAAGTAGAGGTCCTTAA
Found at i:97983308 original size:35 final size:35
Alignment explanation
Indices: 97983262--97983331 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
97983252 AATAAATAAG
97983262 TTAAATAAAATCATTTTTAGTCCATCTTCTTCATC
1 TTAAATAAAATCATTTTTAGTCCATCTTCTTCATC
97983297 TTAAATAAAATCATTTTTAGTCCATCTTCTTCATC
1 TTAAATAAAATCATTTTTAGTCCATCTTCTTCATC
97983332 AAAATCGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (35 bp):
TTAAATAAAATCATTTTTAGTCCATCTTCTTCATC
Found at i:97984925 original size:16 final size:16
Alignment explanation
Indices: 97984904--97984937 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
97984894 CCAAACTTCT
97984904 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
*
97984920 GGCTTTTTGGCATTTC
1 GGCTTTTCGGCATTTC
97984936 GG
1 GG
97984938 GATTTGCCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.21, G:0.29, T:0.44
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:97991929 original size:61 final size:61
Alignment explanation
Indices: 97991834--97991956 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 61
97991824 CGAGTTCTGA
*
97991834 AAGCTATTTTATAAACATCCGCCTCCTTAACCTTCAATTGGTGATACCCCAAACGTAGATC
1 AAGCTATCTTATAAACATCCGCCTCCTTAACCTTCAATTGGTGATACCCCAAACGTAGATC
*
97991895 AAGCTATCTTATAAACATCCGCCTCTTTAACCTTCAATTGGTGATACCCCAAACGTAGATC
1 AAGCTATCTTATAAACATCCGCCTCCTTAACCTTCAATTGGTGATACCCCAAACGTAGATC
97991956 A
1 A
97991957 CTCTTTGAGA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (61 bp):
AAGCTATCTTATAAACATCCGCCTCCTTAACCTTCAATTGGTGATACCCCAAACGTAGATC
Found at i:97995567 original size:28 final size:27
Alignment explanation
Indices: 97995505--97995596 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 27
97995495 ATCCGCACTT
* * *
97995505 ATTCATTTGGCCCCTTTAGGCCCAATCTC
1 ATTCATATGGCCCATTT--GCCCAATCAC
97995534 ATTCATATGGCCCATTTGCCTCAATCAC
1 ATTCATATGGCCCATTTGCC-CAATCAC
**
97995562 ATTCATATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCAT-TTGCCCAATCAC
97995590 ATTCATA
1 ATTCATA
97995597 GCCATGCAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
27 3 0.05
28 35 0.62
29 18 0.32
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (27 bp):
ATTCATATGGCCCATTTGCCCAATCAC
Found at i:97999868 original size:16 final size:16
Alignment explanation
Indices: 97999844--97999875 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
97999834 AGGATGAAAT
*
97999844 AAAATTAAAATAAAAG
1 AAAAATAAAATAAAAG
97999860 AAAAATAAAATAAAAG
1 AAAAATAAAATAAAAG
97999876 GTAGTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:97999901 original size:13 final size:13
Alignment explanation
Indices: 97999885--97999921 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
97999875 GGTAGTTTTA
97999885 AAAAGATAAAAAT
1 AAAAGATAAAAAT
97999898 AAAAGATAAAAAT
1 AAAAGATAAAAAT
97999911 AATAA-ATAAAA
1 AA-AAGATAAAA
97999922 GTCTTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 21 0.91
14 2 0.09
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (13 bp):
AAAAGATAAAAAT
Found at i:97999917 original size:20 final size:20
Alignment explanation
Indices: 97999885--97999922 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
97999875 GGTAGTTTTA
97999885 AAAAGATAAAAATAAAAGAT
1 AAAAGATAAAAATAAAAGAT
97999905 AAAA-ATAATAAATAAAAG
1 AAAAGATAA-AAATAAAAG
97999923 TCTTTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAAGATAAAAATAAAAGAT
Found at i:98012538 original size:24 final size:23
Alignment explanation
Indices: 98012493--98012541 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
98012483 GATTTATCAT
*
98012493 ATTTTTACTAGCGACTTGTCTAC
1 ATTTTTACTAGCGAATTGTCTAC
* *
98012516 ATTTTTACTGGCAGAATTTTCTAC
1 ATTTTTACTAGC-GAATTGTCTAC
98012540 AT
1 AT
98012542 GTTATTATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (23 bp):
ATTTTTACTAGCGAATTGTCTAC
Found at i:98014473 original size:7 final size:7
Alignment explanation
Indices: 98014428--98014486 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
98014418 TTTAAAATAA
98014428 AAATATT
1 AAATATT
98014435 AAAT-TT
1 AAATATT
*
98014441 AAAT-TA
1 AAATATT
* *
98014447 AAAAATA
1 AAATATT
*
98014454 AAAAATT
1 AAATATT
98014461 ATAATATT
1 A-AATATT
98014469 AAATATTT
1 AAATA-TT
98014477 AAATATT
1 AAATATT
98014484 AAA
1 AAA
98014487 AACATTGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 10 0.22
7 22 0.49
8 13 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
AAATATT
Found at i:98014480 original size:28 final size:27
Alignment explanation
Indices: 98014416--98014481 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
98014406 CAATTAGATT
98014416 TATTTAAAATAAAAATATTAAATTTAAA
1 TATTT-AAATAAAAATATTAAATTTAAA
**
98014444 T-TAAAAAATAAAAA-ATTATAATATTAAA
1 TAT-TTAAATAAAAATATTA-AAT-TTAAA
98014472 TATTTAAATA
1 TATTTAAATA
98014482 TTAAAAACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
26 4 0.13
27 13 0.43
28 12 0.40
29 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
TATTTAAATAAAAATATTAAATTTAAA
Found at i:98014995 original size:26 final size:26
Alignment explanation
Indices: 98014945--98014998 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
98014935 TTCTATTCAA
* *
98014945 TTATAATTTTTTTGTAAATTTTATTT
1 TTATAATTTTTTTATAAATTATATTT
98014971 TTATAATTTTTTTAT-AATATATATTT
1 TTATAATTTTTTTATAAAT-TATATTT
98014997 TT
1 TT
98014999 CTGGATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (26 bp):
TTATAATTTTTTTATAAATTATATTT
Found at i:98015031 original size:19 final size:19
Alignment explanation
Indices: 98014987--98015034 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
98014977 TTTTTTTATA
* *
98014987 ATATATATTTTTCTGGATT
1 ATATATATTTTTATGAATT
98015006 ATATATATTTTTATGAATT
1 ATATATATTTTTATGAATT
* *
98015025 TTTTATATTT
1 ATATATATTT
98015035 ATTTCTACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.62
Consensus pattern (19 bp):
ATATATATTTTTATGAATT
Found at i:98027576 original size:46 final size:46
Alignment explanation
Indices: 98027429--98027562 Score: 232
Period size: 46 Copynumber: 2.9 Consensus size: 46
98027419 TGTAACCCGC
* * *
98027429 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
98027475 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
98027521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
98027563 AACCATCCTA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98029987 original size:30 final size:30
Alignment explanation
Indices: 98029943--98030031 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
98029933 CAAAGATAAC
98029943 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
98029972 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
98030002 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
98030032 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:98029991 original size:15 final size:15
Alignment explanation
Indices: 98029943--98030022 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
98029933 CAAAGATAAC
*
98029943 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
98029957 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
98029972 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
98029987 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
98030002 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
98030017 AAGAAA
1 AAGAAA
98030023 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:98030031 original size:15 final size:15
Alignment explanation
Indices: 98029954--98030031 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
98029944 AGAAAACCGA
98029954 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
98029969 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
98029983 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
98029998 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
98030014 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
98030029 ATA
1 ATA
98030032 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:98033101 original size:93 final size:93
Alignment explanation
Indices: 98032989--98033161 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
98032979 GCCCATAAGT
* *
98032989 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98033054 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
98033082 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98033147 CGAGTTCGGATGCCT
66 CGAGTTCGGATGCCT
98033162 CAATCCTAGT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98033156 original size:46 final size:46
Alignment explanation
Indices: 98032981--98033156 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98032971 TGTAACCCGC
* * *
98032981 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98033027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98033077 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
98033120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
98033157 TGCCTCAATC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98034617 original size:46 final size:48
Alignment explanation
Indices: 98034550--98034772 Score: 238
Period size: 47 Copynumber: 4.8 Consensus size: 48
98034540 TGTAACCCGC
* *
98034550 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-G-C-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCAGTT-ACAT
98034596 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCC-AGTTACAT
* *
98034646 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCC-AGTTACAT
* *
98034693 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-G---CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GC-CAGTTACAT
98034736 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
98034773 TGCTCAACCA
Statistics
Matches: 161, Mismatches: 7, Indels: 18
0.87 0.04 0.10
Matches are distributed among these distances:
43 3 0.02
44 1 0.01
45 2 0.01
46 65 0.40
47 78 0.48
48 4 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCAGTTACAT
Found at i:98034658 original size:27 final size:27
Alignment explanation
Indices: 98034628--98034706 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
98034618 CTCAACGAGT
98034628 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
* **
98034655 TCGGA---CTCA---AC-TC-AACGAGT
1 TCGGATGCCT-AGTTACATCTCACGAAC
98034675 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
98034702 TCGGA
1 TCGGA
98034707 CTCAACTCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 18
0.61 0.10 0.30
Matches are distributed among these distances:
20 9 0.24
21 2 0.05
22 3 0.08
23 2 0.05
24 2 0.05
25 3 0.08
26 2 0.05
27 14 0.38
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (27 bp):
TCGGATGCCTAGTTACATCTCACGAAC
Found at i:98034672 original size:47 final size:47
Alignment explanation
Indices: 98034604--98034775 Score: 253
Period size: 47 Copynumber: 3.7 Consensus size: 47
98034594 ATCCATAAGT
98034604 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
98034651 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
98034698 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
98034744 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
98034776 TCAACCATCC
Statistics
Matches: 116, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 33 0.28
47 77 0.66
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98039864 original size:19 final size:19
Alignment explanation
Indices: 98039840--98039879 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
98039830 TGTGTTATCA
*
98039840 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
*
98039859 TAAATTTATAGACATAACT
1 TAAATTCATAGACATAACT
98039878 TA
1 TA
98039880 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:98043638 original size:46 final size:46
Alignment explanation
Indices: 98043585--98043760 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98043575 TATTTGGGCA
98043585 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98043631 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98043678 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98043724 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98043761 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98043740 original size:93 final size:93
Alignment explanation
Indices: 98043581--98043752 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98043571 GGGATATTTG
* *
98043581 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98043646 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98043674 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98043739 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98043753 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98046735 original size:15 final size:15
Alignment explanation
Indices: 98046715--98046783 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98046705 GTATCTTGGG
98046715 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98046730 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98046745 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98046760 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98046775 TTTCTTTAT
1 TTTCTTTAT
98046784 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98046784 original size:30 final size:30
Alignment explanation
Indices: 98046706--98046793 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98046696 CATAGTATCG
* * * *
98046706 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98046736 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98046766 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98046794 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98048761 original size:46 final size:46
Alignment explanation
Indices: 98048708--98048883 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98048698 TATTTGGGCA
98048708 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98048754 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98048801 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98048847 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98048884 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98048863 original size:93 final size:93
Alignment explanation
Indices: 98048704--98048875 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98048694 GGGATATTTG
* *
98048704 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98048769 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98048797 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98048862 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98048876 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98055153 original size:42 final size:43
Alignment explanation
Indices: 98055071--98055164 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
98055061 TCCCGGACGT
* * *
98055071 GGTCTTACATGTAACCGAATATCGATGCCACTGTTCCAGACAG
1 GGTCTTACATGAAACCAAATATCGATGCCACTGTCCCAGACAG
* * *
98055114 GGTCTTACATGAAATCAAATA-CGATGTCGA-TGTCCCAGACAT
1 GGTCTTACATGAAACCAAATATCGATG-CCACTGTCCCAGACAG
98055156 GGTCTTACA
1 GGTCTTACA
98055165 CATAAATCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 24 0.55
43 20 0.45
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAACCAAATATCGATGCCACTGTCCCAGACAG
Found at i:98059618 original size:49 final size:49
Alignment explanation
Indices: 98059438--98059633 Score: 214
Period size: 50 Copynumber: 3.9 Consensus size: 49
98059428 TCTATTGTGA
* *
98059438 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG-ATA-TGT
* * * * ** * *
98059489 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATGAGATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-ATGT
* **
98059539 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATACCAGACTAT-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA-TATGT
* *
98059588 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
98059634 GCTTCGGCTA
Statistics
Matches: 121, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
48 2 0.02
49 39 0.32
50 43 0.36
51 37 0.31
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATATGT
Found at i:98059857 original size:16 final size:19
Alignment explanation
Indices: 98059836--98059872 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
98059826 GGAATGGATT
98059836 AAGTGAA-ATT-GT-GTAA
1 AAGTGAACATTAGTAGTAA
98059852 AAGTGAACATTAGTAGTAA
1 AAGTGAACATTAGTAGTAA
98059871 AA
1 AA
98059873 CAGTATTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 2 0.11
19 6 0.33
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.27
Consensus pattern (19 bp):
AAGTGAACATTAGTAGTAA
Found at i:98062758 original size:48 final size:48
Alignment explanation
Indices: 98062706--98063024 Score: 386
Period size: 48 Copynumber: 6.6 Consensus size: 48
98062696 TCATACCGAT
* * *
98062706 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCACACATATCATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
*
98062754 GCCGATGCCATGTCCCATACATGGTCTTACACTGGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
* *
98062802 GGCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCCAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
*
98062850 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
* * * * * * *
98062898 GCCGATGCCATGTCCAAAACATGGTCTTACGCTAGCACATAAATAAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
* * * * * * * * * *
98062946 GCCGATTCCATGTCCTAGACAAGGTCTTAAACTGACTCTCATCTCGGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-AAC
* * *
98062995 GCTGATGCCATGTCCTAGACACGGTCTTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
98063025 TCGGGATCTC
Statistics
Matches: 232, Mismatches: 38, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
48 205 0.88
49 27 0.12
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
Found at i:98067913 original size:25 final size:25
Alignment explanation
Indices: 98067885--98067932 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98067875 TTATAATATG
* * *
98067885 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
98067910 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
98067933 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:98068001 original size:20 final size:20
Alignment explanation
Indices: 98067976--98068034 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
98067966 TAAATATGGT
98067976 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
98067996 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
98068016 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
98068035 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:98068016 original size:11 final size:11
Alignment explanation
Indices: 98067980--98068034 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98067970 TATGGTATGT
98067980 ATGATATGCAC
1 ATGATATGCAC
* *
98067991 ATGAAATG--T
1 ATGATATGCAC
98068000 ATGATATGCAC
1 ATGATATGCAC
*
98068011 ATGATATG--T
1 ATGATATGCAC
98068020 ATGATATGCAC
1 ATGATATGCAC
98068031 ATGA
1 ATGA
98068035 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:98068200 original size:25 final size:24
Alignment explanation
Indices: 98068085--98068204 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
98068075 GAGGAAGTGA
98068085 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
98068109 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
98068133 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
98068157 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
98068181 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98068205 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 77 0.88
25 11 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:98068412 original size:31 final size:31
Alignment explanation
Indices: 98068377--98068469 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
98068367 CGTTTACAGT
98068377 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98068408 AAAGGCTTCGGCCCAGT-A-ATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
98068437 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98068468 AA
1 AA
98068470 TATGAAAAGG
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
29 28 0.47
30 1 0.02
31 30 0.51
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:98075763 original size:25 final size:25
Alignment explanation
Indices: 98075734--98075781 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98075724 TTATAATATG
* * *
98075734 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
98075759 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
98075782 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:98075850 original size:20 final size:20
Alignment explanation
Indices: 98075825--98075883 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
98075815 TAAATATGGT
98075825 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
98075845 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
98075865 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
98075884 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:98075865 original size:11 final size:11
Alignment explanation
Indices: 98075829--98075883 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98075819 TATGGTATGT
98075829 ATGATATGCAC
1 ATGATATGCAC
* *
98075840 ATGAAATG--T
1 ATGATATGCAC
98075849 ATGATATGCAC
1 ATGATATGCAC
*
98075860 ATGATATG--T
1 ATGATATGCAC
98075869 ATGATATGCAC
1 ATGATATGCAC
98075880 ATGA
1 ATGA
98075884 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:98075961 original size:24 final size:24
Alignment explanation
Indices: 98075934--98076076 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
98075924 GAGGAAGTGA
98075934 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
98075958 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
98075982 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
98076005 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
98076029 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
98076053 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98076077 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:98076027 original size:47 final size:47
Alignment explanation
Indices: 98075934--98076076 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
98075924 GAGGAAGTGA
98075934 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
98075982 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
98076029 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
98076077 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:98076050 original size:71 final size:72
Alignment explanation
Indices: 98075934--98076077 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
98075924 GAGGAAGTGA
*
98075934 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
98075997 CCAGTTAT
65 CCAGTTAT
** * *
98076005 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
98076070 CAGTTAT
66 CAGTTAT
98076077 A
1 A
98076078 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:98076303 original size:31 final size:31
Alignment explanation
Indices: 98076268--98076362 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
98076258 CGTTTACAGT
*
98076268 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
98076299 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
98076330 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98076361 AA
1 AA
98076363 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:98078963 original size:11 final size:10
Alignment explanation
Indices: 98078931--98078986 Score: 62
Period size: 11 Copynumber: 5.6 Consensus size: 10
98078921 CATGAGATTT
98078931 TGATAT-ACA
1 TGATATGACA
*
98078940 TGATTTGACA
1 TGATATGACA
98078950 TGATATGCACA
1 TGATATG-ACA
*
98078961 TGATATG-TA
1 TGATATGACA
98078970 TGATATGCACA
1 TGATATG-ACA
98078981 TGATAT
1 TGATAT
98078987 ATTCATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 13 0.33
10 9 0.23
11 17 0.44
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:98078974 original size:20 final size:20
Alignment explanation
Indices: 98078949--98078986 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
98078939 ATGATTTGAC
98078949 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
98078969 ATGATATGCACATGATAT
1 ATGATATGCACATGATAT
98078987 ATTCATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:98079084 original size:24 final size:24
Alignment explanation
Indices: 98079031--98079103 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 24
98079021 GGAGGAAGTG
* *
98079031 AAAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGGCTTTGCCCCAG-TTATC
* *
98079056 GAAAGGGGCTTTGCCCCAGTTATT
1 AAAAGGGGCTTTGCCCCAGTTATC
* **
98079080 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGGGCTTTGCC-CCAGTTAT
98079104 ATGATAAAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 14 0.36
25 25 0.64
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (24 bp):
AAAAGGGGCTTTGCCCCAGTTATC
Found at i:98086859 original size:20 final size:20
Alignment explanation
Indices: 98086834--98086871 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
98086824 ATGATTTGAC
98086834 ATGATAGGCACATGATATGT
1 ATGATAGGCACATGATATGT
*
98086854 ATGATATGCACATGATAT
1 ATGATAGGCACATGATAT
98086872 ATTCATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGATAGGCACATGATATGT
Found at i:98086868 original size:11 final size:10
Alignment explanation
Indices: 98086816--98086871 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
98086806 CATGAGATTT
98086816 TGATAT-ACA
1 TGATATGACA
*
98086825 TGATTTGACA
1 TGATATGACA
*
98086835 TGATAGGCACA
1 TGATATG-ACA
*
98086846 TGATATG-TA
1 TGATATGACA
98086855 TGATATGCACA
1 TGATATG-ACA
98086866 TGATAT
1 TGATAT
98086872 ATTCATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 13 0.35
10 8 0.22
11 16 0.43
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:98100723 original size:40 final size:40
Alignment explanation
Indices: 98100596--98100725 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
98100586 ATGCTGGAAA
* *
98100596 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
98100636 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
98100676 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
98100716 TTATATCCGG
1 TTATATCCGG
98100726 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:98103710 original size:8 final size:8
Alignment explanation
Indices: 98103697--98103735 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
98103687 CATGATTCAC
98103697 ATATAAAT
1 ATATAAAT
98103705 ATATAAAT
1 ATATAAAT
*
98103713 ATACTTATAT
1 ATA--TAAAT
98103723 ATATAAAT
1 ATATAAAT
98103731 ATATA
1 ATATA
98103736 TATAAGCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 20 0.74
10 7 0.26
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAAAT
Found at i:98103726 original size:12 final size:12
Alignment explanation
Indices: 98103697--98103740 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
98103687 CATGATTCAC
98103697 ATATAAATATAT
1 ATATAAATATAT
**
98103709 AAATATACTTATAT
1 --ATATAAATATAT
98103723 ATATAAATATAT
1 ATATAAATATAT
98103735 ATATAA
1 ATATAA
98103741 GCCATAGCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 16 0.62
14 10 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATAAATATAT
Found at i:98104670 original size:41 final size:43
Alignment explanation
Indices: 98104594--98104712 Score: 170
Period size: 41 Copynumber: 2.8 Consensus size: 43
98104584 TCCCAAACGT
* *
98104594 GGTCTTACATGCAATCACATATCGATGCCACTGTCCTAGATAG
1 GGTCTTACATGCAATCACATATCGATGCCAATGTCCTAGACAG
* * *
98104637 GGTCTTACACG-AATCAAATA-CGATGCCAATGTCCTAGACAT
1 GGTCTTACATGCAATCACATATCGATGCCAATGTCCTAGACAG
*
98104678 GGTCTTACATGTAATCACATATCGATGCCAATGTC
1 GGTCTTACATGCAATCACATATCGATGCCAATGTC
98104713 TCAGATGTGA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 28 0.42
42 16 0.24
43 23 0.34
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGCAATCACATATCGATGCCAATGTCCTAGACAG
Found at i:98104727 original size:43 final size:42
Alignment explanation
Indices: 98104592--98104729 Score: 165
Period size: 43 Copynumber: 3.3 Consensus size: 42
98104582 CGTCCCAAAC
*
98104592 GTGGTCTTACATGCAATCACATATCGATGCCACTGTCCTAGAT
1 GTGGTCTTACATG-AATCACATATCGATGCCAATGTCCTAGAT
* * *
98104635 AG-GGTCTTACACGAATCAAATA-CGATGCCAATGTCCTAGAC
1 -GTGGTCTTACATGAATCACATATCGATGCCAATGTCCTAGAT
*
98104676 ATGGTCTTACATGTAATCACATATCGATGCCAATGT-CTCAGAT
1 GTGGTCTTACATG-AATCACATATCGATGCCAATGTCCT-AGAT
*
98104719 GTGATCTTACA
1 GTGGTCTTACA
98104730 CGAGAATACA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
41 27 0.34
42 18 0.22
43 34 0.43
44 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (42 bp):
GTGGTCTTACATGAATCACATATCGATGCCAATGTCCTAGAT
Found at i:98104727 original size:84 final size:84
Alignment explanation
Indices: 98104575--98104732 Score: 221
Period size: 84 Copynumber: 1.9 Consensus size: 84
98104565 ATATTGTGCA
* * *
98104575 ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCACATATCGATGCCACTGTCCTAGATAGGGT
1 ATGCCAACGTCCCAAACATGGTCTTACATGCAATCACATATCGATGCCAATGTCCTAGATAGGAT
98104640 CTTACACGAATCAAATACG
66 CTTACACGAATCAAATACG
* * * *
98104659 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT-CTCAGAT-GTG
1 ATGCCAACGTCCCAAACATGGTCTTACATGCAATCACATATCGATGCCAATGTCCT-AGATAG-G
98104722 ATCTTACACGA
64 ATCTTACACGA
98104733 GAATACATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
83 3 0.05
84 62 0.95
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (84 bp):
ATGCCAACGTCCCAAACATGGTCTTACATGCAATCACATATCGATGCCAATGTCCTAGATAGGAT
CTTACACGAATCAAATACG
Found at i:98106146 original size:15 final size:17
Alignment explanation
Indices: 98106121--98106154 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
98106111 TCACTAACGG
98106121 AATTTTCTTAT-TTCAC
1 AATTTTCTTATCTTCAC
98106137 AATTTT-TTATCTTCAC
1 AATTTTCTTATCTTCAC
98106153 AA
1 AA
98106155 GCCAGAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTTTCTTATCTTCAC
Found at i:98108927 original size:38 final size:35
Alignment explanation
Indices: 98108868--98108985 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
98108858 TCAATCATGC
*
98108868 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
98108907 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
98108938 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
98108969 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
98108986 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:98108929 original size:31 final size:31
Alignment explanation
Indices: 98108891--98108985 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
98108881 CCTTTTCATA
*
98108891 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98108922 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98108953 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98108984 TT
1 TT
98108986 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:98109228 original size:24 final size:24
Alignment explanation
Indices: 98109177--98109318 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
98109167 GCTTTATCAT
*
98109177 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
98109202 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
98109226 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
98109249 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
98109272 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
98109296 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98109319 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 16 0.15
23 12 0.11
24 69 0.63
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:98109265 original size:46 final size:48
Alignment explanation
Indices: 98109177--98109317 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 48
98109167 GCTTTATCAT
* *
98109177 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
98109226 ATAACTGGGGCATAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
98109272 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
98109318 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 37 0.44
47 12 0.14
48 24 0.28
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:98109399 original size:11 final size:11
Alignment explanation
Indices: 98109369--98109422 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98109359 TATGATTACC
98109369 TCATGTGCATA
1 TCATGTGCATA
*
98109380 TCA--TACATA
1 TCATGTGCATA
98109389 TCATGTGCATA
1 TCATGTGCATA
*
98109400 TCA--TACAT-
1 TCATGTGCATA
98109408 TCATGTGCATA
1 TCATGTGCATA
98109419 TCAT
1 TCAT
98109423 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:98109413 original size:19 final size:20
Alignment explanation
Indices: 98109369--98109427 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
98109359 TATGATTACC
98109369 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
98109389 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
98109408 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
98109428 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:98115666 original size:38 final size:35
Alignment explanation
Indices: 98115607--98115724 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
98115597 TCAATCATGC
*
98115607 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
98115646 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
98115677 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
98115708 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
98115725 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:98115668 original size:31 final size:31
Alignment explanation
Indices: 98115630--98115724 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
98115620 CCTTTTCATA
*
98115630 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98115661 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98115692 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
98115723 TT
1 TT
98115725 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:98115967 original size:24 final size:24
Alignment explanation
Indices: 98115916--98116057 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
98115906 GCTTTATCAT
*
98115916 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
98115941 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
98115965 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
98115988 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
98116011 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
98116035 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98116058 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 16 0.15
23 12 0.11
24 69 0.63
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:98116004 original size:46 final size:48
Alignment explanation
Indices: 98115916--98116056 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 48
98115906 GCTTTATCAT
* *
98115916 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
98115965 ATAACTGGGGCATAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
98116011 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
98116057 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 37 0.44
47 12 0.14
48 24 0.28
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:98116133 original size:20 final size:20
Alignment explanation
Indices: 98116108--98116167 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
98116098 TATGATTACC
98116108 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
98116128 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
98116148 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
98116168 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:98116138 original size:11 final size:11
Alignment explanation
Indices: 98116108--98116162 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98116098 TATGATTACC
98116108 TCATGTGCATA
1 TCATGTGCATA
*
98116119 TCA--TACATA
1 TCATGTGCATA
98116128 TCATGTGCATA
1 TCATGTGCATA
* *
98116139 TCA--TACATT
1 TCATGTGCATA
98116148 TCATGTGCATA
1 TCATGTGCATA
98116159 TCAT
1 TCAT
98116163 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:98124706 original size:29 final size:29
Alignment explanation
Indices: 98124674--98124809 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
98124664 ATACCCTTCG
** * *
98124674 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
98124703 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
98124732 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
98124761 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
98124790 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
98124810 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:98124801 original size:58 final size:58
Alignment explanation
Indices: 98124649--98124808 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
98124639 AATTTAAGCC
* *** * * ** * *
98124649 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
98124707 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
98124765 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
98124809 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Done.