Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 318 of 410
Found at i:98759290 original size:19 final size:19
Alignment explanation
Indices: 98759268--98759310 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
98759258 AAAAAATCTT
98759268 AAAATATTTAAAAATTACA
1 AAAATATTTAAAAATTACA
98759287 AAAATATTTAAAAATTACA
1 AAAATATTTAAAAATTACA
98759306 AAAAT
1 AAAAT
98759311 TATTGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATATTTAAAAATTACA
Found at i:98759297 original size:28 final size:29
Alignment explanation
Indices: 98759257--98759312 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
98759247 ACATCATCCA
*
98759257 AAAAAAATCTTAAAATATT-TAAAAATTAC
1 AAAAAAATCTTAAAA-ATTACAAAAATTAC
*
98759286 AAAAATAT-TTAAAAATTACAAAAATTA
1 AAAAAAATCTTAAAAATTACAAAAATTA
98759313 TTGAATTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 3 0.12
28 14 0.58
29 7 0.29
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (29 bp):
AAAAAAATCTTAAAAATTACAAAAATTAC
Found at i:98759353 original size:19 final size:19
Alignment explanation
Indices: 98759268--98759354 Score: 71
Period size: 19 Copynumber: 4.8 Consensus size: 19
98759258 AAAAAATCTT
98759268 AAAA-TATTTAAAAATTACA
1 AAAATTATTT-AAAATTACA
98759287 AAAA-TATTTAAAAATTACA
1 AAAATTATTT-AAAATTACA
* *
98759306 AAAATTA-TT-GAATT--G
1 AAAATTATTTAAAATTACA
* *
98759321 TAAATT-TATAAAATTACA
1 AAAATTATTTAAAATTACA
98759339 AAAATTATTTAAAATT
1 AAAATTATTTAAAATT
98759355 TTTAATATTC
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
15 6 0.11
16 4 0.07
17 4 0.07
18 5 0.09
19 33 0.61
20 2 0.04
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAATTATTTAAAATTACA
Found at i:98760927 original size:40 final size:39
Alignment explanation
Indices: 98760882--98761089 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
98760872 CGGAATACAA
*
98760882 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
98760922 CCGGATAGAGCGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
98760962 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
98761002 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
98761042 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
98761082 CCGGATAT
1 CCGGATAT
98761090 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:98761022 original size:80 final size:80
Alignment explanation
Indices: 98760882--98761088 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
98760872 CGGAATACAA
* * *
98760882 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCGACTAGCAC-AATG
*
98760946 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
98760962 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTG-GTCACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCG--ACTAGCACAAT
*
98761025 GGCCTTCGGGTCTTAAC
64 GGCCTTCGGGTATTAAC
** * ** * *
98761042 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
98761089 TCATTCAATT
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 102 0.94
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:98774179 original size:33 final size:33
Alignment explanation
Indices: 98774154--98774446 Score: 108
Period size: 33 Copynumber: 8.9 Consensus size: 33
98774144 TTTTCTAGTT
* * *
98774154 GTACACCCGAGGTGTACATTCCCTTTTCAAATG
1 GTACACACGAAGTGTACATACCCTTTTCAAATG
* *
98774187 GTACACACGAAGTGTACATACCCTTTAC-AATCT
1 GTACACACGAAGTGTACATACCCTTTTCAAAT-G
* * * * *
98774220 ATACACACAAAGTGCACATAACCTTTTCAAGT-
1 GTACACACGAAGTGTACATACCCTTTTCAAATG
* * ** *
98774252 GTACACA-TATAGTGTACCTTTCCTTTTCAAGTG
1 GTACACACGA-AGTGTACATACCCTTTTCAAATG
* * * ** *
98774285 GTATACAC-AGAGTATACCTTTCCTTTTCAAGTG
1 GTACACACGA-AGTGTACATACCCTTTTCAAATG
* * * * ** *
98774318 GTATACACAAAGTATACCTTTCCTTTTCAAGTG
1 GTACACACGAAGTGTACATACCCTTTTCAAATG
* * * * **
98774351 GTATACACAAAGTATACCTTTCCTTTTCAAATG
1 GTACACACGAAGTGTACATACCCTTTTCAAATG
* * * * * ** *
98774384 GTATACGCAAAGTATACCTTTCCTTTTCAAGTG
1 GTACACACGAAGTGTACATACCCTTTTCAAATG
* * * **
98774417 GTATACACAAAGTATACATTTCCTTTTCAA
1 GTACACACGAAGTGTACATACCCTTTTCAA
98774447 TACCACCCTT
Statistics
Matches: 229, Mismatches: 25, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
31 1 0.00
32 27 0.12
33 198 0.86
34 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (33 bp):
GTACACACGAAGTGTACATACCCTTTTCAAATG
Found at i:98774348 original size:66 final size:66
Alignment explanation
Indices: 98774241--98774446 Score: 333
Period size: 66 Copynumber: 3.1 Consensus size: 66
98774231 GTGCACATAA
* * * * *
98774241 CCTTTTCAAGT-GTACACATATAGTGTACCTTTCCTTTTCAAGTGGTATACACAGAGTATACCTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTT
98774305 T
66 T
98774306 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTT
98774371 T
66 T
* * *
98774372 CCTTTTCAAATGGTATACGCAAAGTATACCTTTCCTTTTCAAGTGGTATACACAAAGTATACATT
1 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTT
98774437 T
66 T
98774438 CCTTTTCAA
1 CCTTTTCAA
98774447 TACCACCCTT
Statistics
Matches: 132, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
65 11 0.08
66 121 0.92
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (66 bp):
CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAGTGGTATACACAAAGTATACCTT
T
Found at i:98774398 original size:99 final size:98
Alignment explanation
Indices: 98774241--98774446 Score: 331
Period size: 99 Copynumber: 2.1 Consensus size: 98
98774231 GTGCACATAA
* * * * *
98774241 CCTTTTCAAGTGTACACATATAGTGTACCTTTCCTTTTCAAGTGGTATACACAGAGTATACCTTT
1 CCTTTTCAAGTGTACACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTTT
*
98774306 CCTTTTCAAGTGGTATACACAAAGTATACCTTT
66 CCTTTTCAAGTGGTATACACAAAGTATACATTT
* *
98774339 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCAAATGGTATACGCAAAGTATACCTT
1 CCTTTTCAAGT-GTACACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTT
98774404 TCCTTTTCAAGTGGTATACACAAAGTATACATTT
65 TCCTTTTCAAGTGGTATACACAAAGTATACATTT
98774438 CCTTTTCAA
1 CCTTTTCAA
98774447 TACCACCCTT
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
98 11 0.11
99 88 0.89
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (98 bp):
CCTTTTCAAGTGTACACACAAAGTATACCTTTCCTTTTCAAATGGTATACACAAAGTATACCTTT
CCTTTTCAAGTGGTATACACAAAGTATACATTT
Found at i:98775161 original size:21 final size:22
Alignment explanation
Indices: 98775115--98775157 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
98775105 TGTAAAAGTG
*
98775115 ATTTCTCTATCAATAACCTTTC
1 ATTTCTCTATCAATAAACTTTC
98775137 ATTTC-CTATC-ATAAACTTTC
1 ATTTCTCTATCAATAAACTTTC
98775157 A
1 A
98775158 ATTTGCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 5 0.25
22 5 0.25
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTCTCTATCAATAAACTTTC
Found at i:98775631 original size:13 final size:13
Alignment explanation
Indices: 98775613--98775638 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98775603 ACACATAATT
98775613 GATAAAAATTTTC
1 GATAAAAATTTTC
98775626 GATAAAAATTTTC
1 GATAAAAATTTTC
98775639 ATGCAATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GATAAAAATTTTC
Found at i:98782001 original size:18 final size:17
Alignment explanation
Indices: 98781978--98782039 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 17
98781968 AATTAATTTT
98781978 AAATTTTTAAAAATTCAA
1 AAATTTTTAAAAATT-AA
*
98781996 AAATTTGTAAAAATT--
1 AAATTTTTAAAAATTAA
98782011 --ATTTTTAAAAATTAA
1 AAATTTTTAAAAATTAA
98782026 AAATTATTTAAAAA
1 AAATT-TTTAAAAA
98782040 GTATAAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 12 0.32
17 3 0.08
18 22 0.59
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATTTTTAAAAATTAA
Found at i:98782018 original size:31 final size:31
Alignment explanation
Indices: 98781980--98782039 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
98781970 TTAATTTTAA
98781980 ATTTTTAAAAATTCAAAAATT-TGTAAAAATT
1 ATTTTTAAAAATT-AAAAATTATGTAAAAATT
*
98782011 ATTTTTAAAAATTAAAAATTATTTAAAAA
1 ATTTTTAAAAATTAAAAATTATGTAAAAA
98782040 GTATAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (31 bp):
ATTTTTAAAAATTAAAAATTATGTAAAAATT
Found at i:98782046 original size:20 final size:19
Alignment explanation
Indices: 98782003--98782039 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
98781993 CAAAAATTTG
98782003 TAAAAATTATTTTTAAAAAT
1 TAAAAATTA-TTTTAAAAAT
98782023 TAAAAATTA-TTTAAAAA
1 TAAAAATTATTTTAAAAA
98782040 GTATAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAAAATTATTTTAAAAAT
Found at i:98789077 original size:17 final size:17
Alignment explanation
Indices: 98789055--98789088 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98789045 CACAGTCCTG
98789055 ATTCAGGCAGTCTATAT
1 ATTCAGGCAGTCTATAT
*
98789072 ATTCAGGTAGTCTATAT
1 ATTCAGGCAGTCTATAT
98789089 TGAGATAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (17 bp):
ATTCAGGCAGTCTATAT
Found at i:98790419 original size:16 final size:16
Alignment explanation
Indices: 98790398--98790434 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
98790388 TTTTTTTTTT
98790398 GAAAGAGAAGGTCCGA
1 GAAAGAGAAGGTCCGA
*
98790414 GAAAGATAAGGTCCGA
1 GAAAGAGAAGGTCCGA
*
98790430 AAAAG
1 GAAAG
98790435 TAAAAAAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.11, G:0.32, T:0.08
Consensus pattern (16 bp):
GAAAGAGAAGGTCCGA
Found at i:98793975 original size:26 final size:25
Alignment explanation
Indices: 98793926--98793976 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
98793916 AGTAAATTTA
* *
98793926 ATAATTATAATAGTTATAAAAAAAC
1 ATAATTATAATAATTACAAAAAAAC
98793951 ATAATTATAAATAATTACAACAAAAA
1 ATAATTAT-AATAATTACAA-AAAAA
98793977 GTAAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 9 0.41
27 5 0.23
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (25 bp):
ATAATTATAATAATTACAAAAAAAC
Found at i:98798239 original size:41 final size:41
Alignment explanation
Indices: 98798192--98798271 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
98798182 GTAATATAGC
98798192 TTGAAAAACATATATGACGTATAAAAATACAATAAAAAATA
1 TTGAAAAACATATATGACGTATAAAAATACAATAAAAAATA
98798233 TTGAAAAACATATATGACGTATAAAAATACAATAAAAAA
1 TTGAAAAACATATATGACGTATAAAAATACAATAAAAAA
98798272 ATATACACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.24
Consensus pattern (41 bp):
TTGAAAAACATATATGACGTATAAAAATACAATAAAAAATA
Found at i:98798432 original size:2 final size:2
Alignment explanation
Indices: 98798377--98798424 Score: 51
Period size: 2 Copynumber: 23.5 Consensus size: 2
98798367 TATTACATAA
* * * *
98798377 AT AT AT AT TT AT AT AT ACT AG AG AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
98798420 AT AT A
1 AT AT A
98798425 ACATATATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (2 bp):
AT
Found at i:98798991 original size:34 final size:38
Alignment explanation
Indices: 98798920--98798992 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 38
98798910 ATACATATGC
*
98798920 ATAATATATATATAACATGATATTTAAAACACATATAT
1 ATAATATATATATAACATGATATATAAAACACATATAT
* *
98798958 ATAATATATA-A-AA-ATTATATATAATACAC-TATAT
1 ATAATATATATATAACATGATATATAAAACACATATAT
98798992 A
1 A
98798993 AGTATATTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.19
35 13 0.41
36 2 0.06
37 1 0.03
38 10 0.31
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.37
Consensus pattern (38 bp):
ATAATATATATATAACATGATATATAAAACACATATAT
Found at i:98802260 original size:23 final size:24
Alignment explanation
Indices: 98802234--98802286 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 24
98802224 TATAAGATAA
* *
98802234 AAAGTAAATTCAAATAAAA-AATG
1 AAAGTAAAATAAAATAAAATAATG
98802257 AAAG-AAAATAAAATAAAATAATG
1 AAAGTAAAATAAAATAAAATAATG
*
98802280 AGAGTAA
1 AAAGTAA
98802287 TAGTACCTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 12 0.48
23 11 0.44
24 2 0.08
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.19
Consensus pattern (24 bp):
AAAGTAAAATAAAATAAAATAATG
Found at i:98806484 original size:30 final size:29
Alignment explanation
Indices: 98806450--98806523 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 29
98806440 AATTAATTTA
* *
98806450 TTAAAAATTTTAAAATTATAAAAAGTTATT
1 TTAAAAATATTAAAATCATAAAAA-TTATT
* *
98806480 TTAAAAAAATTAAAATCATTAAAATTATT
1 TTAAAAATATTAAAATCATAAAAATTATT
*
98806509 TTAAAAATAATAAAA
1 TTAAAAATATTAAAA
98806524 ATTATATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
29 18 0.47
30 20 0.53
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (29 bp):
TTAAAAATATTAAAATCATAAAAATTATT
Found at i:98806741 original size:3 final size:3
Alignment explanation
Indices: 98806735--98806774 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
98806725 ATAATAATAA
98806735 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
98806775 TGAACCCAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:98807778 original size:19 final size:21
Alignment explanation
Indices: 98807739--98807778 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
98807729 ACATCAACAC
*
98807739 TTTAAGACATTCACCAACCAA
1 TTTAAGACATTCACAAACCAA
98807760 TTTAAGACATT-A-AAACCAA
1 TTTAAGACATTCACAAACCAA
98807779 GCCAAAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 11 0.61
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (21 bp):
TTTAAGACATTCACAAACCAA
Found at i:98808566 original size:25 final size:25
Alignment explanation
Indices: 98808530--98808603 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
98808520 AAGCACTCTC
98808530 TCGAGC-ATATAACAGGAAGCTCAT
1 TCGAGCTATATAACAGGAAGCTCAT
* *
98808554 GT-GAGCTATATAACAGAAAGCTTAT
1 -TCGAGCTATATAACAGGAAGCTCAT
* *
98808579 TCGGGCTATTTAACAGGAAGCTCAT
1 TCGAGCTATATAACAGGAAGCTCAT
98808604 AATAGCCATA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 5 0.12
25 36 0.88
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (25 bp):
TCGAGCTATATAACAGGAAGCTCAT
Found at i:98808738 original size:24 final size:24
Alignment explanation
Indices: 98808636--98808739 Score: 66
Period size: 25 Copynumber: 4.2 Consensus size: 24
98808626 AAGCTCATGT
* * *
98808636 GAGCCAATAACGGGTAGCTCCGAA
1 GAGCCAATATCGGGAAGCTCCGGA
* * **
98808660 GAGCCATTAATCAGGAAGCTCTAGA
1 GAGCCAAT-ATCGGGAAGCTCCGGA
* * * * *
98808685 TAGCCATATATCGGGTAGTTCAAGCA
1 GAGCCA-ATATCGGGAAGCTC-CGGA
98808711 -AGCCAATATCGGGAAGCTCCGGA
1 GAGCCAATATCGGGAAGCTCCGGA
98808734 GAGCCA
1 GAGCCA
98808740 TTAATCAAGA
Statistics
Matches: 57, Mismatches: 19, Indels: 8
0.68 0.23 0.10
Matches are distributed among these distances:
23 2 0.04
24 24 0.42
25 29 0.51
26 2 0.04
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (24 bp):
GAGCCAATATCGGGAAGCTCCGGA
Found at i:98808892 original size:24 final size:25
Alignment explanation
Indices: 98808865--98808912 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
98808855 GGATGCTTCG
*
98808865 AAGAGCAAT-TAACGGGAAGCTCGC
1 AAGAACAATATAACGGGAAGCTCGC
* *
98808889 AAGAACCATATAATGGGAAGCTCG
1 AAGAACAATATAACGGGAAGCTCG
98808913 ACAGGGCCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.15
Consensus pattern (25 bp):
AAGAACAATATAACGGGAAGCTCGC
Found at i:98813740 original size:2 final size:2
Alignment explanation
Indices: 98813733--98813759 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
98813723 TATGCACATA
98813733 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
98813760 CATTTTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98813885 original size:6 final size:6
Alignment explanation
Indices: 98813869--98813898 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
98813859 TAGCTTTATG
98813869 TATTATT TATTTT TATTTT TATTTT TATTT
1 TATT-TT TATTTT TATTTT TATTTT TATTT
98813899 ATTTTACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:98813892 original size:16 final size:16
Alignment explanation
Indices: 98813871--98813903 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98813861 GCTTTATGTA
98813871 TTATTTATTTTTATTT
1 TTATTTATTTTTATTT
98813887 TTATTT-TTATTTATTT
1 TTATTTATT-TTTATTT
98813903 T
1 T
98813904 ACAATCTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTATTTATTTTTATTT
Found at i:98813952 original size:2 final size:2
Alignment explanation
Indices: 98813945--98813982 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
98813935 TCTGTTTATG
*
98813945 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98813983 ATTTACCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:98814287 original size:19 final size:19
Alignment explanation
Indices: 98814250--98814287 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
98814240 TTGAGATTGC
*
98814250 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTAAAAT
*
98814269 CAACCTATTTGCTTAAAAT
1 CAACCTATTTGCCTAAAAT
98814288 TATTCATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTAAAAT
Found at i:98814381 original size:6 final size:7
Alignment explanation
Indices: 98814363--98814388 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
98814353 CACTCCCTTT
98814363 TAAAAAA
1 TAAAAAA
98814370 TAAAAAA
1 TAAAAAA
98814377 TAAAAAA
1 TAAAAAA
98814384 TAAAA
1 TAAAA
98814389 TTTCAAAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAA
Found at i:98816416 original size:24 final size:24
Alignment explanation
Indices: 98816389--98816442 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
98816379 TTTCTTTCCT
*
98816389 TTGCATT-CATCCCATGCATTTGCA
1 TTGCATTGCATCACATGCA-TTGCA
**
98816413 TTGCATTGCATCATGTGCATTGCA
1 TTGCATTGCATCACATGCATTGCA
98816437 TTGCAT
1 TTGCAT
98816443 CATTTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (24 bp):
TTGCATTGCATCACATGCATTGCA
Found at i:98816431 original size:19 final size:19
Alignment explanation
Indices: 98816409--98816452 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
98816399 CCCATGCATT
98816409 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
*
98816428 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
98816447 TGCATT
1 TGCATT
98816453 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:98819756 original size:93 final size:93
Alignment explanation
Indices: 98819644--98819815 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98819634 GCCCATAAGT
* *
98819644 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98819709 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
98819737 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98819802 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
98819816 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98819811 original size:46 final size:46
Alignment explanation
Indices: 98819636--98819811 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98819626 TGTAACCCGC
* * *
98819636 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98819682 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98819732 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
98819775 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
98819812 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98822235 original size:30 final size:30
Alignment explanation
Indices: 98822191--98822279 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
98822181 CAAAGATAAC
98822191 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
98822220 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
98822250 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
98822280 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:98822239 original size:15 final size:15
Alignment explanation
Indices: 98822191--98822270 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
98822181 CAAAGATAAC
*
98822191 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
98822205 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
98822220 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
98822235 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
98822250 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
98822265 AAGAAA
1 AAGAAA
98822271 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:98822279 original size:15 final size:15
Alignment explanation
Indices: 98822202--98822279 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
98822192 AGAAAACCGA
98822202 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
98822217 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
98822231 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
98822246 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
98822262 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
98822277 ATA
1 ATA
98822280 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:98825302 original size:93 final size:93
Alignment explanation
Indices: 98825190--98825361 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98825180 GCCCATAAGT
* *
98825190 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98825255 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
98825283 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98825348 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
98825362 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98825357 original size:46 final size:46
Alignment explanation
Indices: 98825182--98825357 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98825172 TGTAACCCGC
* * *
98825182 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98825228 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98825278 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
98825321 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
98825358 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98826857 original size:6 final size:6
Alignment explanation
Indices: 98826846--98826875 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
98826836 GGCGCTATAT
98826846 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
1 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
98826876 AAAAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.33, T:0.00
Consensus pattern (6 bp):
GGCAAA
Found at i:98828871 original size:88 final size:88
Alignment explanation
Indices: 98828722--98828923 Score: 332
Period size: 88 Copynumber: 2.3 Consensus size: 88
98828712 AGTTGAAGAT
* *
98828722 ATCCAAGATGATTTGGCATCTCTGTATCAGATGGGGAGTAGATCGAAGACATAGCTAATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGATAGGGAGCAGATCGAAGACATAGCTAATTTGGCT
* *
98828787 TTCACGTGTTTATGTTAAAGCAG
66 TTCACGTGTTTACGTTAAAGCAA
* * *
98828810 ATCCAAGATCATTTGGCATCTCTGTATCAGGTAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGATAGGGAGCAGATCGAAGACATAGCTAATTTGGCT
*
98828875 TTCACGTGTTTACGTTGAAGCAA
66 TTCACGTGTTTACGTTAAAGCAA
98828898 ATCCAAGATGATTTGGCATCTCTGTA
1 ATCCAAGATGATTTGGCATCTCTGTA
98828924 GCGGCGGAGA
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGATAGGGAGCAGATCGAAGACATAGCTAATTTGGCT
TTCACGTGTTTACGTTAAAGCAA
Found at i:98828964 original size:44 final size:44
Alignment explanation
Indices: 98828907--98829701 Score: 1149
Period size: 44 Copynumber: 18.1 Consensus size: 44
98828897 AATCCAAGAT
* *
98828907 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGGTCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
98828951 GATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
98828995 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * **
98829039 GATTTGGCGTCTCTGTAGCGGCGGAGAACAAATCGAAAATAGTA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
98829083 GATTTGGGGTCTCTGTAGCGGTGAAGAGCAGTTCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
98829127 GATTTAGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
98829171 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
98829215 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
98829259 GATTTGGCTTCTTTGTAGCGGCGGAGAACAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * *
98829303 GATTTTGCGTCTCTGTAGCGGCTTAGAGCAAATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * *
98829347 GATTTGACATTTCTATAGCAGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
98829391 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
98829435 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
98829479 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
98829523 GATTTGACATTTCTGTAGCGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
98829567 GATTTGGCATTTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
98829611 GATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATGACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * *
98829655 GATTTGGCGTCTCTATATTGGCAGAGAGCAGATTGAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
98829699 GAT
1 GAT
98829702 CGGTGTTCCT
Statistics
Matches: 672, Mismatches: 79, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 672 1.00
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:98830832 original size:2 final size:2
Alignment explanation
Indices: 98830825--98830855 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
98830815 TATGCACATA
98830825 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
98830856 CATTTTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98832704 original size:14 final size:14
Alignment explanation
Indices: 98832662--98832704 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
98832652 AAAATATCAG
*
98832662 TTAAAATATCAAAA
1 TTAAAATATAAAAA
* *
98832676 TTTAAATATATAAA
1 TTAAAATATAAAAA
*
98832690 TTAAAATAAAAAAA
1 TTAAAATATAAAAA
98832704 T
1 T
98832705 ATTCTTAATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (14 bp):
TTAAAATATAAAAA
Found at i:98834739 original size:18 final size:20
Alignment explanation
Indices: 98834713--98834752 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
98834703 GGTAATTAAA
*
98834713 GAAGAAGAAGAAAAAGAAAAG
1 GAAGAAGAAG-AAGAGAAAAG
98834734 GAAGAAGAAGAAGAGAAAA
1 GAAGAAGAAGAAGAGAAAA
98834753 TTATAGAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (20 bp):
GAAGAAGAAGAAGAGAAAAG
Found at i:98839341 original size:31 final size:30
Alignment explanation
Indices: 98839303--98839366 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
98839293 AATAGGTAAT
*
98839303 TGATTTGTCACTTTTCGATAAAATT-AGTTAC
1 TGATTTGTCACTTTTC-A-AAAATTGAGTGAC
* *
98839334 TGATTTGTTATTTTTCAAAAATTGAGTGAC
1 TGATTTGTCACTTTTCAAAAATTGAGTGAC
98839364 TGA
1 TGA
98839367 ATTGAAATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 14 0.48
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (30 bp):
TGATTTGTCACTTTTCAAAAATTGAGTGAC
Found at i:98839762 original size:25 final size:27
Alignment explanation
Indices: 98839707--98839762 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 27
98839697 ATATATTTTT
*
98839707 AAAAAATATATATAAAATCTAGAAAAT
1 AAAAAATATATATAAAATCTAGAAAAG
*
98839734 AAAAAAT-TAT-TAAAA-CTTATAAAAG
1 AAAAAATATATATAAAATC-TAGAAAAG
98839759 AAAA
1 AAAA
98839763 TTTAAAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 15 0.58
26 3 0.12
27 7 0.27
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (27 bp):
AAAAAATATATATAAAATCTAGAAAAG
Found at i:98841150 original size:18 final size:19
Alignment explanation
Indices: 98841122--98841157 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
98841112 ATACTAGTAC
98841122 CATATCAACATCTATCATA
1 CATATCAACATCTATCATA
*
98841141 CATA-CAACATTTATCAT
1 CATATCAACATCTATCAT
98841158 GCCATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (19 bp):
CATATCAACATCTATCATA
Found at i:98869048 original size:41 final size:41
Alignment explanation
Indices: 98868937--98869048 Score: 111
Period size: 41 Copynumber: 2.7 Consensus size: 41
98868927 GACATTCGGG
* * * ** *
98868937 CTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTAAATTGGG
1 CTTTGAGCCTAGCAGGCCTTGTGCTGGTGTATAAAATCAGA
*
98868978 CTTT-ATGCCTAGCAGG-CTTATTGCTGGTGTATAAAATCAGA
1 CTTTGA-GCCTAGCAGGCCTT-GTGCTGGTGTATAAAATCAGA
* *
98869019 CTTTGAGTCTAGCAGGCCTTGTGCCGGTGT
1 CTTTGAGCCTAGCAGGCCTTGTGCTGGTGT
98869049 GTGTTACAAG
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
40 4 0.07
41 49 0.86
42 4 0.07
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.33
Consensus pattern (41 bp):
CTTTGAGCCTAGCAGGCCTTGTGCTGGTGTATAAAATCAGA
Found at i:98879098 original size:63 final size:63
Alignment explanation
Indices: 98878981--98879101 Score: 154
Period size: 63 Copynumber: 1.9 Consensus size: 63
98878971 GAGAAAGATA
* * * * * *
98878981 TGGAAATGATTATGATTTTCTCTAAAATGAAAATGAAAATGAGAATGGAGAAATGAAATATTT
1 TGGAAATGAATATGATTTTCTCCAAAATGAAAAAGAAAAAGAAAATGGAAAAATGAAATATTT
* *
98879044 TGGAAATGAATGTGGTTTTCTCCAAAATGAAAAAGAAAAAGAAAAAT-GAAAAATGAAA
1 TGGAAATGAATATGATTTTCTCCAAAATGAAAAAGAAAAAG-AAAATGGAAAAATGAAA
98879102 ATGACCTGGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 45 0.92
64 4 0.08
ACGTcount: A:0.50, C:0.04, G:0.19, T:0.26
Consensus pattern (63 bp):
TGGAAATGAATATGATTTTCTCCAAAATGAAAAAGAAAAAGAAAATGGAAAAATGAAATATTT
Found at i:98879103 original size:13 final size:13
Alignment explanation
Indices: 98879067--98879105 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
98879057 GGTTTTCTCC
*
98879067 AAAATGAAAAAGA
1 AAAATGAAAATGA
98879080 AAAA-GAAAAATGA
1 AAAATG-AAAATGA
98879093 AAAATGAAAATGA
1 AAAATGAAAATGA
98879106 CCTGGAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:98881723 original size:28 final size:26
Alignment explanation
Indices: 98881684--98881741 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 26
98881674 CAACTAAATC
*
98881684 AAAA-CCTCAACAAATTCAAATAACAA
1 AAAAGCCTCAACAAACTCAAAT-ACAA
98881710 TAAAAGCCTCAACAAACTCAAATACAA
1 -AAAAGCCTCAACAAACTCAAATACAA
98881737 AAAAG
1 AAAAG
98881742 TAAGAACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 5 0.17
27 8 0.28
28 16 0.55
ACGTcount: A:0.60, C:0.22, G:0.03, T:0.14
Consensus pattern (26 bp):
AAAAGCCTCAACAAACTCAAATACAA
Found at i:98881834 original size:6 final size:6
Alignment explanation
Indices: 98881823--98881882 Score: 111
Period size: 6 Copynumber: 10.0 Consensus size: 6
98881813 GTTAGTGAAA
*
98881823 AAATAT AAATAT AAATAC AAATAT AAATAT AAATAT AAATAT AAATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
98881871 AAATAT AAATAT
1 AAATAT AAATAT
98881883 TATAAGATCT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:98886214 original size:40 final size:40
Alignment explanation
Indices: 98886164--98886256 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
98886154 CTCGGTATCG
* *
98886164 CACACATAGTGCC-TCATATAGCTGAAGCTA-TTCCAACTCA
1 CACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAAC-CA
* * **
98886204 CACACTTAGTGCCATTTGTAGCCGAAGCTATTTTGAACCA
1 CACACTTAGTGCCATATATAGCCGAAGCTATTTCCAACCA
98886244 CACACTTAGTGCC
1 CACACTTAGTGCC
98886257 GAACATAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 39 0.87
41 6 0.13
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (40 bp):
CACACTTAGTGCCATATATAGCCGAAGCTATTTCCAACCA
Found at i:98900423 original size:4 final size:4
Alignment explanation
Indices: 98900414--98900452 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
98900404 AATGACAAGG
* *
98900414 AAAT AAAT AAAT AAAT ACAT AAAT AAAT GAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
98900453 ATAGAGGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:98902253 original size:51 final size:51
Alignment explanation
Indices: 98902092--98902277 Score: 219
Period size: 51 Copynumber: 3.6 Consensus size: 51
98902082 GTTATAAGAA
* * * * *
98902092 TTGTCGCTTCAATCTGCTCCACTGCAACTTCATGAAGATAAGATCTATAGC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCATGGAGATAAGATCTGTAGC
** * * * *
98902143 TTGTAGGATTAATATGTTCCAGTGCAACTTTCAGGGAAATAAGATCTGTAGC
1 TTGTAGCTTTAATCTGTTCCACTGCAAC-TTCATGGAGATAAGATCTGTAGC
* * *
98902195 TTGTAGCTTTAGTCTATTCCAATGCAACTTCATGGAGATAAGATCTGTAGC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCATGGAGATAAGATCTGTAGC
* *
98902246 TTATAGCTTTAATCTGTGCCACTGCAACTTCA
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCA
98902278 GAGAAATAAG
Statistics
Matches: 110, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
51 69 0.63
52 41 0.37
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (51 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACTTCATGGAGATAAGATCTGTAGC
Found at i:98902656 original size:138 final size:137
Alignment explanation
Indices: 98902482--98902840 Score: 427
Period size: 138 Copynumber: 2.6 Consensus size: 137
98902472 GGTGAACAGT
* * * * *
98902482 TTCAATCTGCTCTACTACAACTTCAAGAAGATAAGGTTAATGAATTCAATCTGCTCCACTGCAAC
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGGTT-ATGAATTCAATCTGCTCCACTGTAAC
* * * * * * *
98902547 TTCAGGGATATAAGATTCTCCATGATAGATTTAATCTCACCTACTGCAACCTTAGAGGTATAGGA
65 TTCAGGGAGATAAGATTCGCCATGATAGATTTAATCTCACCCACTGCAACCTCAAAAGTATAAGA
98902612 CTTGTCAC
130 CTTGTCAC
* * * *
98902620 TTCAATCTACTCCACTGCAACTTGAGGGAGATAAGGTCTAT-AACTTTAATCTGCCCCACTGTAA
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGGT-TATGAA-TTCAATCTGCTCCACTGTAA
* * *
98902684 CTTTACGGAGATAAGATTCGCCATGATAGATTTAATCTGACCCACTGCAACCTCAAAAGTATAAG
64 CTTCAGGGAGATAAGATTCGCCATGATAGATTTAATCTCACCCACTGCAACCTCAAAAGTATAAG
*
98902749 ACTTGTTAC
129 ACTTGTCAC
* * * *
98902758 TTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTGGCA-TCAATC-ACTCCACTGTAA
1 TTCAATCTACTCCACTACAACTTCAGGGAGATAAG-GTTAT-GAATTCAATCTGCTCCACTGTAA
*
98902821 CTTCAGGGAGATAAGGTTCG
64 CTTCAGGGAGATAAGATTCG
98902841 TGACTTCAAT
Statistics
Matches: 185, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
137 29 0.16
138 153 0.83
139 2 0.01
140 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (137 bp):
TTCAATCTACTCCACTACAACTTCAGGGAGATAAGGTTATGAATTCAATCTGCTCCACTGTAACT
TCAGGGAGATAAGATTCGCCATGATAGATTTAATCTCACCCACTGCAACCTCAAAAGTATAAGAC
TTGTCAC
Found at i:98902792 original size:44 final size:45
Alignment explanation
Indices: 98902212--98903111 Score: 255
Period size: 44 Copynumber: 19.6 Consensus size: 45
98902202 TTTAGTCTAT
* * *
98902212 TCCAATGCAACTTCATGGAGATAAGATCTGTAGCTTATAGCTTTAATCTG-
1 TCCACTGCAACTTCAGGGAGATAAGAT-T-T-G--T-TAGCTTCAATCTGC
* * * * *
98902262 TGCCACTGCAACTTCAGAGAAATAAGATTTGCTATCTTCAATCTAC
1 T-CCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * * *
98902308 TCCACTACAACTTCAGGGGGATAAGACTTG-TAGCTTTAATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
** ** * * * **
98902352 TCTGCTATAACTTTAGGGAGATCAA-ATTCATAACTTGTAGCTTTAATCTAT
1 TCCACTGCAACTTCAGGGAGAT-AAGATT--T---GT-TAGCTTCAATCTGC
* * * * * * * *
98902403 TCCACTGCAACTTTAGGGAAATAATATTCGCTATCATCAA-CATGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATC-TGC
* * * ** *
98902448 TCTACTGTAAC-TCTAGGGAGATAAG--GTGAACAGTTTCAATCTGC
1 TCCACTGCAACTTC-AGGGAGATAAGATTTG-TTAGCTTCAATCTGC
* * * * * ** * *
98902492 TCTACTACAACTTCAAGAAGATAAGGTTAATGA-ATTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * *
98902536 TCCACTGCAACTTCAGGGATATAAGATTCTCCATGATAGATTTAATCT-C
1 TCCACTGCAACTTCAGGGAGATAAGA-T-T---TGTTAGCTTCAATCTGC
* * * * * *
98902585 ACCTACTGCAACCTT-AGAGG-TATAGGACTTGTCA-CTTCAATCTAC
1 TCC-ACTGCAA-CTTCAG-GGAGATAAGATTTGTTAGCTTCAATCTGC
* * * * * *
98902630 TCCACTGCAACTTGAGGGAGATAAGGTCT-ATAACTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * * * * *
98902674 CCCACTGTAACTTTACGGAGATAAGATTCGCCATGATAGATTTAATCTGAC
1 TCCACTGCAACTTCAGGGAGATAAGATT-----TGTTAGCTTCAATCTG-C
* ** * *
98902725 -CCACTGCAACCTCA-AAAGTATAAGACTTGTTA-CTTCAATCTAC
1 TCCACTGCAACTTCAGGGAG-ATAAGATTTGTTAGCTTCAATCTGC
* * * *
98902768 TCCACTACAACTTCAGGGAGATAAGATTTG-TGGCATCAATC-AC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * * *
98902811 TCCACTGTAACTTCAGGGAGATAAGGTTCGTGA-CTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * * * * * *
98902855 TCTACTACAACCTCAGAGAGATAAGATTTGCTATCTTCGATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * *
98902900 TCCACTGTAACTT-TGGGAAGATAAGATCTG-TAACTTCAAGT-TGC
1 TCCACTGCAACTTCAGGG-AGATAAGATTTGTTAGCTTCAA-TCTGC
* * * * *
98902944 TTCACTGTAACTTTAGGGAGATAAGATTTGCAACTTGTAGCTTTAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-----T-TAGCTTCAATCTGC
* * * * * * **
98902995 TCTACTACAACTTTAGGGAAATAAGATTCGCTATTTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
* * * *
98903040 TCCACTGCAACATCAGGGAGATAAGACTTG-TAGCTTTAATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
*
98903084 -CCTACTGCAACTTCAGAGAGATAAGATT
1 TCC-ACTGCAACTTCAGGGAGATAAGATT
98903112 CGCCACGATG
Statistics
Matches: 616, Mismatches: 177, Indels: 120
0.67 0.19 0.13
Matches are distributed among these distances:
43 46 0.07
44 263 0.43
45 144 0.23
46 3 0.00
48 2 0.00
49 8 0.01
50 58 0.09
51 92 0.15
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTTAGCTTCAATCTGC
Found at i:98903107 original size:140 final size:140
Alignment explanation
Indices: 98902619--98903111 Score: 321
Period size: 140 Copynumber: 3.6 Consensus size: 140
98902609 GGACTTGTCA
* * * * * *
98902619 CTTCAATCTACTCCACTGCAACTTGAGGG-AGATAAGGTCTATAACTTTAA-TCTGCCCCACTGT
1 CTTCAATCTACTCCACTGCAAC-TCAGGGAAGATAAGATCTGTAACTTCAAGT-TGCCTCACTGC
* * * * ** * *
98902682 AACTTTACG-GAGATAAGATTCGC--CATGATAGATTTAATCTGACCCACTGCAACCTCA-A-AA
64 AACTTCA-GAGAGATAAGATTTGCAACTTG-TAGCTTTAATCTGTTCTACTACAACCTCAGAGAA
*
98902742 GTATAAGACTT-GTTA-
127 --ATAAGA-TTCGCTAT
* * ** *
98902757 CTTCAATCTACTCCACTACAACTTCAGGG-AGATAAGATTTGTGGCATCAA--T-CACTCCACTG
1 CTTCAATCTACTCCACTGCAAC-TCAGGGAAGATAAGATCTGTAACTTCAAGTTGC-CT-CACTG
* * * * * *
98902818 TAACTTCAGGGAGATAAG-GTT----CGTG-A-CTTCAATCTGTTCTACTACAACCTCAGAGAGA
63 CAACTTCAGAGAGATAAGATTTGCAACTTGTAGCTTTAATCTGTTCTACTACAACCTCAGAGAAA
*
98902876 TAAGATTTGCTAT
128 TAAGATTCGCTAT
* * ** * *
98902889 CTTCGATCTACTCCACTGTAACTTTGGGAAGATAAGATCTGTAACTTCAAGTTGCTTCACTGTAA
1 CTTCAATCTACTCCACTGCAACTCAGGGAAGATAAGATCTGTAACTTCAAGTTGCCTCACTGCAA
* * * * *
98902954 CTTTAGGGAGATAAGATTTGCAACTTGTAGCTTTAATCTGTTCTACTACAACTTTAGGGAAATAA
66 CTTCAGAGAGATAAGATTTGCAACTTGTAGCTTTAATCTGTTCTACTACAACCTCAGAGAAATAA
98903019 GATTCGCTAT
131 GATTCGCTAT
* * * * *
98903029 TTTCAATCTGCTCCACTGCAACATCAGGG-AGATAAGA-CTTGTAGCTTTAATTTGCC-CTACTG
1 CTTCAATCTACTCCACTGCAAC-TCAGGGAAGATAAGATC-TGTAACTTCAAGTTGCCTC-ACTG
98903091 CAACTTCAGAGAGATAAGATT
63 CAACTTCAGAGAGATAAGATT
98903112 CGCCACGATG
Statistics
Matches: 280, Mismatches: 54, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
130 2 0.01
131 33 0.12
132 38 0.14
133 23 0.08
134 7 0.03
135 2 0.01
136 4 0.01
137 20 0.07
138 44 0.16
139 3 0.01
140 100 0.36
141 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (140 bp):
CTTCAATCTACTCCACTGCAACTCAGGGAAGATAAGATCTGTAACTTCAAGTTGCCTCACTGCAA
CTTCAGAGAGATAAGATTTGCAACTTGTAGCTTTAATCTGTTCTACTACAACCTCAGAGAAATAA
GATTCGCTAT
Found at i:98903338 original size:16 final size:17
Alignment explanation
Indices: 98903317--98903349 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98903307 TGGATGAATA
98903317 TAGAATG-TCATTTTTT
1 TAGAATGATCATTTTTT
*
98903333 TAGAATGATCCTTTTTT
1 TAGAATGATCATTTTTT
98903350 AATGCTTAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
TAGAATGATCATTTTTT
Found at i:98908868 original size:24 final size:24
Alignment explanation
Indices: 98908821--98908938 Score: 154
Period size: 23 Copynumber: 5.0 Consensus size: 24
98908811 GCTTTATCAT
*
98908821 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
98908846 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
98908870 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
98908893 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
98908916 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98908939 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
23 44 0.52
24 27 0.32
25 14 0.16
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:98909015 original size:20 final size:20
Alignment explanation
Indices: 98908992--98909034 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
98908982 GAACATCTCG
98908992 TGTGCATATAATACATATCA
1 TGTGCATATAATACATATCA
*
98909012 TGTGCATATCATACATATCA
1 TGTGCATATAATACATATCA
98909032 TGT
1 TGT
98909035 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATAATACATATCA
Found at i:98909099 original size:25 final size:25
Alignment explanation
Indices: 98909071--98909118 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98909061 ATGTATAAAC
* * *
98909071 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
98909096 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
98909119 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:98909555 original size:8 final size:8
Alignment explanation
Indices: 98909542--98909577 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
98909532 AAATGCCAGG
98909542 ATTTCGGC
1 ATTTCGGC
98909550 ATTTCGGC
1 ATTTCGGC
*
98909558 ATTTCGAC
1 ATTTCGGC
*
98909566 TTTTCGGC
1 ATTTCGGC
98909574 ATTT
1 ATTT
98909578 TATCGCTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.44
Consensus pattern (8 bp):
ATTTCGGC
Found at i:98916917 original size:24 final size:24
Alignment explanation
Indices: 98916853--98916971 Score: 197
Period size: 24 Copynumber: 5.0 Consensus size: 24
98916843 GCTTTATCAT
*
98916853 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
98916878 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
98916901 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
98916925 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
98916949 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
98916972 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
23 18 0.20
24 65 0.71
25 8 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:98917054 original size:20 final size:21
Alignment explanation
Indices: 98917020--98917067 Score: 89
Period size: 20 Copynumber: 2.3 Consensus size: 21
98917010 ATTTATGAAC
98917020 ATCATGTGTCATATCATACAT
1 ATCATGTGTCATATCATACAT
98917041 ATCATGTG-CATATCATACAT
1 ATCATGTGTCATATCATACAT
98917061 ATCATGT
1 ATCATGT
98917068 TTATCAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
ATCATGTGTCATATCATACAT
Found at i:98917147 original size:25 final size:25
Alignment explanation
Indices: 98917105--98917152 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98917095 TGTAATAAAC
* * *
98917105 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
98917130 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
98917153 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:98924864 original size:23 final size:23
Alignment explanation
Indices: 98924836--98924953 Score: 220
Period size: 23 Copynumber: 5.1 Consensus size: 23
98924826 CCTAGCCTCT
98924836 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
98924858 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
98924882 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
98924905 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
98924928 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
98924951 TTT
1 TTT
98924954 TGCACTTCCT
Statistics
Matches: 94, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
23 88 0.94
24 6 0.06
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:98925031 original size:20 final size:20
Alignment explanation
Indices: 98925008--98925050 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
98924998 GAACATCTCG
98925008 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
98925028 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
98925048 TGT
1 TGT
98925051 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:98925115 original size:25 final size:25
Alignment explanation
Indices: 98925087--98925134 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98925077 ATATATAAAC
* * *
98925087 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
98925112 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
98925135 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:98930233 original size:3 final size:3
Alignment explanation
Indices: 98930225--98930293 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
98930215 CATGGATAGG
98930225 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
98930273 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
98930294 CTGAAACAAC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:98935691 original size:82 final size:82
Alignment explanation
Indices: 98935597--98935870 Score: 370
Period size: 82 Copynumber: 3.3 Consensus size: 82
98935587 ACCGTAGGAT
* * * * * *
98935597 TAAATCTCGAAACAAAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
1 TAAATCTCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATAAAAATGGAATAAAAT
* * *
98935662 CTGTTAAACGACGGGAA
66 CTGTTGAATGGCGGGAA
* * *
98935679 TAAATC-CTGAAACAGGATTATTCAATTAATTCTCGTTCGGAAACAAAATTAAAATGGAATAAAA
1 TAAATCTC-GAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATAAAAATGGAATAAAA
* *
98935743 TATGTTGAATGGCGGAAA
65 TCTGTTGAATGGCGGGAA
98935761 TAAATCTCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATAAAAAATGGAATAAAA
1 TAAATCTCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAAT-AAAAATGGAATAAAA
* *
98935826 TCTGTTGAATGGTGAGAA
65 TCTGTTGAATGGCGGGAA
*
98935844 TAAATCCCGAAACAGAATTATTCAATT
1 TAAATCTCGAAACAGAATTATTCAATT
98935871 TTAATTTTTT
Statistics
Matches: 168, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
81 1 0.01
82 112 0.67
83 55 0.33
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (82 bp):
TAAATCTCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATAAAAATGGAATAAAAT
CTGTTGAATGGCGGGAA
Found at i:98937980 original size:9 final size:9
Alignment explanation
Indices: 98937962--98938024 Score: 56
Period size: 9 Copynumber: 6.7 Consensus size: 9
98937952 ACACCCTCTG
*
98937962 AAAATTTTA
1 AAAATATTA
98937971 AAAATATTA
1 AAAATATTA
98937980 AAAATATATA
1 AAAATAT-TA
*
98937990 AAAATTATAA
1 AAAA-TATTA
*
98938000 CAAAATATAA
1 -AAAATATTA
98938010 AAAACTA-TA
1 AAAA-TATTA
98938019 AAAATA
1 AAAATA
98938025 ACAATACCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
8 2 0.04
9 24 0.51
10 14 0.30
11 7 0.15
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (9 bp):
AAAATATTA
Found at i:98937991 original size:10 final size:10
Alignment explanation
Indices: 98937969--98938024 Score: 66
Period size: 10 Copynumber: 5.8 Consensus size: 10
98937959 CTGAAAATTT
98937969 TAAAAATAT-
1 TAAAAATATA
98937978 TAAAAATATA
1 TAAAAATATA
98937988 TAAAAAT-TA
1 TAAAAATATA
98937997 TAACAAA-ATA
1 TAA-AAATATA
98938007 TAAAAA-ACTA
1 TAAAAATA-TA
98938017 TAAAAATA
1 TAAAAATA
98938025 ACAATACCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
9 18 0.43
10 23 0.55
11 1 0.02
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.27
Consensus pattern (10 bp):
TAAAAATATA
Found at i:98938479 original size:32 final size:34
Alignment explanation
Indices: 98938417--98938479 Score: 78
Period size: 32 Copynumber: 1.9 Consensus size: 34
98938407 TAATACAAGG
* *
98938417 AATTTTGTGATATTTTCACTGTATTTAGATAATA
1 AATTTTGTGATATTTGCACTGTATTGAGATAATA
98938451 AATTTT-T-ATATTTGCACT-TAATTGAGATA
1 AATTTTGTGATATTTGCACTGT-ATTGAGATA
98938480 CCTAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
31 1 0.04
32 18 0.69
33 1 0.04
34 6 0.23
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.49
Consensus pattern (34 bp):
AATTTTGTGATATTTGCACTGTATTGAGATAATA
Found at i:98940156 original size:14 final size:14
Alignment explanation
Indices: 98940137--98940166 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
98940127 GAGAATTATC
98940137 TAAAAAGATGGAAT
1 TAAAAAGATGGAAT
98940151 TAAAAAGATGGAAT
1 TAAAAAGATGGAAT
98940165 TA
1 TA
98940167 GCCTTGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (14 bp):
TAAAAAGATGGAAT
Found at i:98941102 original size:26 final size:27
Alignment explanation
Indices: 98941037--98941103 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 27
98941027 AGTAGGCTAT
*
98941037 ATATTATTT-TTATTAAATTATATTTA
1 ATATTATTTATTATTAAAATATATTTA
* *
98941063 ATAATAATTA-TATTAAAATAT-TATTA
1 ATATTATTTATTATTAAAATATAT-TTA
98941089 A-ATTATTTATTATTA
1 ATATTATTTATTATTA
98941104 TTTTATTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
25 7 0.21
26 26 0.79
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
ATATTATTTATTATTAAAATATATTTA
Found at i:98943163 original size:27 final size:27
Alignment explanation
Indices: 98943133--98943224 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
98943123 AGCATAGCTG
*
98943133 CCAGAAACAGTGAA-TGTGGCAAAGCCA
1 CCAGAATCAGT-AATTGTGGCAAAGCCA
* *
98943160 CCAGTATCAGTAATTATGGCAAAGCCA
1 CCAGAATCAGTAATTGTGGCAAAGCCA
* *
98943187 CCAGTATCAGTAATTGTGGCATAGCCA
1 CCAGAATCAGTAATTGTGGCAAAGCCA
98943214 CCA-ATATCAGT
1 CCAGA-ATCAGT
98943225 GAATGTGACA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 55 0.96
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAATCAGTAATTGTGGCAAAGCCA
Found at i:98943237 original size:27 final size:27
Alignment explanation
Indices: 98943147--98943224 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
98943137 AAACAGTGAA
98943147 TGTGGCAAAGCCACCAGTATCAGTAAT
1 TGTGGCAAAGCCACCAGTATCAGTAAT
*
98943174 TATGGCAAAGCCACCAGTATCAGTAAT
1 TGTGGCAAAGCCACCAGTATCAGTAAT
* *
98943201 TGTGGCATAGCCACCAATATCAGT
1 TGTGGCAAAGCCACCAGTATCAGT
98943225 GAATGTGACA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (27 bp):
TGTGGCAAAGCCACCAGTATCAGTAAT
Found at i:98943419 original size:27 final size:27
Alignment explanation
Indices: 98943388--98943528 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
98943378 GGGCGTACTT
*
98943388 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCTTACAGGGGCATTACG
* * *
98943415 ATCATTTTACCTTACA-GGGTATTATG
1 GTCATTTTACCTTACAGGGGCATTACG
* *
98943441 GTTATTTTACCTTACGGGGGCATTACG
1 GTCATTTTACCTTACAGGGGCATTACG
*
98943468 GTCATTTTATCC-TAC-GAAGGCATTACG
1 GTCATTTTA-CCTTACAG-GGGCATTACG
* *
98943495 ATCATTTTACCTTACAGGGGTATTACG
1 GTCATTTTACCTTACAGGGGCATTACG
98943522 GTCATTT
1 GTCATTT
98943529 CTATCTATTA
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 24 0.26
27 67 0.71
28 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGCATTACG
Found at i:98956217 original size:43 final size:43
Alignment explanation
Indices: 98956163--98956333 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
98956153 ATATCGTCCA
* *
98956163 ATGCCAA-TGTCCCAGACGTGGTCTTACATGTAATCATATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACG-AATCACATATCG
*
98956206 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACACGAATCACATATCG
* * * *
98956247 ATGCCGA-TGTCTCAGACATGGTCTTACACGTAATCACATATCA
1 ATGCCAACTGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* *
98956290 ATGCCAAC-ATCCCAGACGTGGT-TTAACATGAATACACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTT-ACACGAAT-CACATATCG
98956333 A
1 A
98956334 AAATCCTATG
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
41 27 0.25
42 23 0.21
43 56 0.52
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:98958350 original size:23 final size:23
Alignment explanation
Indices: 98958320--98958377 Score: 100
Period size: 23 Copynumber: 2.5 Consensus size: 23
98958310 CTCACACATA
98958320 TCAACACAATTATACAATTCAAT
1 TCAACACAATTATACAATTCAAT
98958343 TCAACACAATTATACAATTCAAT
1 TCAACACAATTATACAATTCAAT
98958366 TCAA-ACATATTA
1 TCAACACA-ATTA
98958378 ACATACATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 3 0.09
23 31 0.91
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (23 bp):
TCAACACAATTATACAATTCAAT
Found at i:98959320 original size:5 final size:5
Alignment explanation
Indices: 98959310--98959336 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
98959300 GATGCCAACC
98959310 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
98959337 TTTATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:98964357 original size:9 final size:9
Alignment explanation
Indices: 98964339--98964367 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
98964329 AATACAATTA
98964339 TCAG-ATGC
1 TCAGCATGC
98964347 TCAGCATGC
1 TCAGCATGC
98964356 TCAGCATGC
1 TCAGCATGC
98964365 TCA
1 TCA
98964368 TTCACATCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (9 bp):
TCAGCATGC
Found at i:98967178 original size:29 final size:29
Alignment explanation
Indices: 98967135--98967207 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
98967125 CTTACCGATT
* * *
98967135 TGGCTTCCGGTCATGCATATCGGATGATA
1 TGGCTTCAGGCCATGCATATCAGATGATA
** *
98967164 TGGCTTTGGGCCATGCATATCAGATGATT
1 TGGCTTCAGGCCATGCATATCAGATGATA
98967193 TGGCTTCAGGCCATG
1 TGGCTTCAGGCCATG
98967208 ATAATAGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.32
Consensus pattern (29 bp):
TGGCTTCAGGCCATGCATATCAGATGATA
Found at i:98969133 original size:43 final size:42
Alignment explanation
Indices: 98969077--98969230 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 42
98969067 TGATTTCGTA
* * *
98969077 TAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATTACGTG
1 TAAGACCACGTCTGAGACGTTGGCATCGATTT-TGATTACATG
* * * *
98969120 TAAGAGCATGTCTGAGTCGTTGGCATCG-TATTTGATTTCATG
1 TAAGACCACGTCTGAGACGTTGGCATCGAT-TTTGATTACATG
*
98969162 TAAGACC-CTGTCTGAGACAG-TGGCATCAATATTTGATTACATG
1 TAAGACCAC-GTCTGAGAC-GTTGGCATCGAT-TTTGATTACATG
* *
98969205 TAAGACCACGTCTGGGACGTAGGCAT
1 TAAGACCACGTCTGAGACGTTGGCAT
98969231 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 30 0.33
43 60 0.66
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
TAAGACCACGTCTGAGACGTTGGCATCGATTTTGATTACATG
Found at i:98976621 original size:43 final size:43
Alignment explanation
Indices: 98976573--98976726 Score: 197
Period size: 43 Copynumber: 3.6 Consensus size: 43
98976563 TGATTTCGTA
98976573 TAAGACCACGTCTGGGACATTGGCATCGAT-TTTAGATTACATG
1 TAAGACCACGTCTGGGACATTGGCATCGATATTT-GATTACATG
* * ***
98976616 TAAGACCATGTTTGGGACATTGGCATCG-TATTTGATTTTGTG
1 TAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACATG
* *
98976658 TAAGACC-CTGTCTGAGACAGTGGCATCGATATTTGATTACATG
1 TAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACATG
*
98976701 TAAGACCACGTCTGGGACATTAGCAT
1 TAAGACCACGTCTGGGACATTGGCAT
98976727 TGTACAAGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.33
43 61 0.66
44 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACATG
Found at i:98976706 original size:85 final size:85
Alignment explanation
Indices: 98976563--98976726 Score: 233
Period size: 85 Copynumber: 1.9 Consensus size: 85
98976553 TTCTAATATG
* * * *
98976563 TGATTTCGTATAAGACCACGTCTGGGACATTGGCATCGATTTTAGATTACATGTAAGACCATGTT
1 TGATTTCGTATAAGACCACGTCTGAGACAGTGGCATCGATTTTAGATTACATGTAAGACCACGTC
*
98976628 TGGGACATTGGCATCGTATT
66 TGGGACATTAGCATCGTATT
* *
98976648 TGATTTTGTGTAAGACC-CTGTCTGAGACAGTGGCATCGATATTT-GATTACATGTAAGACCACG
1 TGATTTCGTATAAGACCAC-GTCTGAGACAGTGGCATCGAT-TTTAGATTACATGTAAGACCACG
98976711 TCTGGGACATTAGCAT
64 TCTGGGACATTAGCAT
98976727 TGTACAAGCT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 1 0.01
85 66 0.94
86 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (85 bp):
TGATTTCGTATAAGACCACGTCTGAGACAGTGGCATCGATTTTAGATTACATGTAAGACCACGTC
TGGGACATTAGCATCGTATT
Found at i:98978119 original size:31 final size:31
Alignment explanation
Indices: 98978081--98978142 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
98978071 TCTATGATGC
98978081 TATGATTTTTGTGAAATGTATGCGAAATGTT
1 TATGATTTTTGTGAAATGTATGCGAAATGTT
98978112 TATGATTTTTGTGAAATGTATGCGAAATGTT
1 TATGATTTTTGTGAAATGTATGCGAAATGTT
98978143 CCGATATGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (31 bp):
TATGATTTTTGTGAAATGTATGCGAAATGTT
Found at i:98983844 original size:11 final size:11
Alignment explanation
Indices: 98983828--98983852 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98983818 TTAGTGAAAG
98983828 TTTAAGTGATT
1 TTTAAGTGATT
98983839 TTTAAGTGATT
1 TTTAAGTGATT
98983850 TTT
1 TTT
98983853 GTTTATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTAAGTGATT
Found at i:98984390 original size:29 final size:29
Alignment explanation
Indices: 98984357--98984426 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
98984347 GTATCTTACC
*
98984357 GATTTGGCTTCGGATCATACATATCGGAT
1 GATTTGGCTTCGGACCATACATATCGGAT
* *
98984386 GATTTGGCTTCGGGCCATGCATATCGGAT
1 GATTTGGCTTCGGACCATACATATCGGAT
98984415 GATTTGGCTTCG
1 GATTTGGCTTCG
98984427 AGCCATGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.34
Consensus pattern (29 bp):
GATTTGGCTTCGGACCATACATATCGGAT
Found at i:98986086 original size:93 final size:93
Alignment explanation
Indices: 98985974--98986145 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98985964 GCCCATAAGT
* *
98985974 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98986039 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
98986067 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98986132 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
98986146 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98986141 original size:46 final size:46
Alignment explanation
Indices: 98985966--98986141 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98985956 TGTAACCCGC
* * *
98985966 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98986012 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98986062 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
98986105 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
98986142 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98996132 original size:20 final size:18
Alignment explanation
Indices: 98996107--98996156 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
98996097 CGGGCTGAGG
98996107 ACACGGGAGTGTCCCAAGCC
1 ACACGGGAGTGT--CAAGCC
* *
98996127 ACACGGGTGTGTGAAGCC
1 ACACGGGAGTGTCAAGCC
*
98996145 ACACGGGCGTGT
1 ACACGGGAGTGT
98996157 GTGACCACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 16 0.59
20 11 0.41
ACGTcount: A:0.22, C:0.28, G:0.36, T:0.14
Consensus pattern (18 bp):
ACACGGGAGTGTCAAGCC
Found at i:98996164 original size:18 final size:19
Alignment explanation
Indices: 98996122--98996168 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
98996112 GGAGTGTCCC
98996122 AAGCCACAC-GGGTGTGTG
1 AAGCCACACGGGGTGTGTG
98996140 AAGCCACACGGGCGTGTGTG
1 AAGCCACACGGG-GTGTGTG
98996160 -A-CCACACGG
1 AAGCCACACGG
98996169 CCTACCCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 17 0.63
19 3 0.11
20 7 0.26
ACGTcount: A:0.23, C:0.28, G:0.36, T:0.13
Consensus pattern (19 bp):
AAGCCACACGGGGTGTGTG
Found at i:99012516 original size:63 final size:63
Alignment explanation
Indices: 99012438--99012570 Score: 230
Period size: 63 Copynumber: 2.1 Consensus size: 63
99012428 ACTGTCTAAG
* *
99012438 ATGGGGTAAATTATACATGCATCTAATCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
1 ATGGGGTAAATTATACATACATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
* *
99012501 ATGGGGTAAATTATACATACATCTAACCACTTAATAATTTCTTTTTTCACCACATCTTTCATA
1 ATGGGGTAAATTATACATACATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
99012564 ATGGGGT
1 ATGGGGT
99012571 TCAGTTTCTG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (63 bp):
ATGGGGTAAATTATACATACATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
Found at i:99014705 original size:2 final size:2
Alignment explanation
Indices: 99014698--99014726 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
99014688 ATCCCTCTTC
99014698 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99014727 GGAGTGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:99015060 original size:21 final size:21
Alignment explanation
Indices: 99015029--99015084 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
99015019 TTTATTAAAT
* *
99015029 TTGTAA-AAAATTATAAATATC
1 TTGTAATAAAA-TAAAAATATA
99015050 TT-TAATAAAATAAAAATATA
1 TTGTAATAAAATAAAAATATA
99015070 TTGTAAT-AAATAAAA
1 TTGTAATAAAATAAAA
99015085 TTAATTTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 21 0.68
21 10 0.32
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.36
Consensus pattern (21 bp):
TTGTAATAAAATAAAAATATA
Found at i:99021879 original size:61 final size:61
Alignment explanation
Indices: 99021810--99021931 Score: 172
Period size: 61 Copynumber: 2.0 Consensus size: 61
99021800 GGGCTTTGAT
* * *
99021810 ATGTATTTATTTGGGCTTTGGCCCATATCCTTTATACTTACTCTATGATAGATGCAGTTCA
1 ATGTATTTATTTGGGCTATGACCCATATCCTTTATACTAACTCTATGATAGATGCAGTTCA
* * * * *
99021871 ATGTATTTATTTGGGCTATGACCCATATCTTTTGTACTAACTCTATGGTGGATGGAGTTCA
1 ATGTATTTATTTGGGCTATGACCCATATCCTTTATACTAACTCTATGATAGATGCAGTTCA
99021932 GTTGACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (61 bp):
ATGTATTTATTTGGGCTATGACCCATATCCTTTATACTAACTCTATGATAGATGCAGTTCA
Found at i:99026534 original size:57 final size:58
Alignment explanation
Indices: 99026473--99026587 Score: 146
Period size: 58 Copynumber: 2.0 Consensus size: 58
99026463 ATCCTGCTTC
* *
99026473 CAACATATGCTC-ATAAGAGATTA-ATCAAGATTACCTA-TCCGGGCTAAATCCTATCTA
1 CAACACATGCTCAATAAG-GATTATATCAAGATTACC-AGTCCAGGCTAAATCCTATCTA
* * *
99026530 CAACACATGCTCAATAAGGCTTATATCACGATTACCAGTCCAGGCTAAATCCTTTCTA
1 CAACACATGCTCAATAAGGATTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTA
99026588 TAATAAGGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
57 16 0.32
58 34 0.68
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (58 bp):
CAACACATGCTCAATAAGGATTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTA
Found at i:99029691 original size:18 final size:18
Alignment explanation
Indices: 99029664--99029700 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
99029654 AGCATATCCT
*
99029664 TTAGAGCCTAAATTACCC
1 TTAGAACCTAAATTACCC
99029682 TTAGAACCTAAATTACCC
1 TTAGAACCTAAATTACCC
99029700 T
1 T
99029701 CTCGGACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (18 bp):
TTAGAACCTAAATTACCC
Found at i:99042559 original size:24 final size:24
Alignment explanation
Indices: 99042527--99042626 Score: 137
Period size: 24 Copynumber: 4.0 Consensus size: 24
99042517 ATTGAGCATA
99042527 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
99042551 ATGCCATGGACTTATTTTACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
99042575 CATATTGCCATGGACTTTTTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
99042603 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
99042627 CACAATGTCA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
24 44 0.66
25 1 0.01
27 1 0.01
28 21 0.31
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:99042578 original size:52 final size:52
Alignment explanation
Indices: 99042521--99042633 Score: 181
Period size: 52 Copynumber: 2.2 Consensus size: 52
99042511 TTTCTCATTG
*
99042521 AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTTACTT
1 AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCACTT
* * *
99042573 AGCATATTGCCATGGACTTTTTTCACTTAGATGCCATGGTCTTATTTCACTT
1 AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCACTT
*
99042625 AGCACAATG
1 AGCATAATG
99042634 TCATATCTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (52 bp):
AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCACTT
Found at i:99045144 original size:2 final size:2
Alignment explanation
Indices: 99045139--99045178 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
99045129 TTCAGCTACT
*
99045139 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
99045179 GTTATAGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:99050569 original size:22 final size:22
Alignment explanation
Indices: 99050541--99050582 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
99050531 ATGTAAGTTC
99050541 GTATGTTTAAATAACATGTTTT
1 GTATGTTTAAATAACATGTTTT
*
99050563 GTATGTTTAAATAACGTGTT
1 GTATGTTTAAATAACATGTT
99050583 AATGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.17, T:0.48
Consensus pattern (22 bp):
GTATGTTTAAATAACATGTTTT
Found at i:99051321 original size:17 final size:16
Alignment explanation
Indices: 99051299--99051330 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
99051289 TTATAGATTA
99051299 TTGGAAGCTCGATCGGC
1 TTGGAAGCTCG-TCGGC
99051316 TTGGAAGCTCGTCGG
1 TTGGAAGCTCGTCGG
99051331 AGGCCTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.16, C:0.22, G:0.38, T:0.25
Consensus pattern (16 bp):
TTGGAAGCTCGTCGGC
Found at i:99056390 original size:17 final size:17
Alignment explanation
Indices: 99056368--99056401 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
99056358 TTGAGTTCCC
* *
99056368 ATAGTAATTCTTTAAAT
1 ATAGTAAATCTTAAAAT
99056385 ATAGTAAATCTTAAAAT
1 ATAGTAAATCTTAAAAT
99056402 TATATTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (17 bp):
ATAGTAAATCTTAAAAT
Found at i:99059528 original size:46 final size:44
Alignment explanation
Indices: 99059322--99059635 Score: 173
Period size: 46 Copynumber: 6.7 Consensus size: 44
99059312 GGTAATTTGT
* *
99059322 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATCGTCGAGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTC-TCGA-GC
* * * * * **
99059371 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCATAT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T--CGTCTCGA-GC
* * ** * * *
99059421 CGACGTTATGTCCCAGACATGGTCTTACACTAAC-ACATCTCATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTCTC-GAGC
*
99059467 CAATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGA-GC
* * * * *
99059513 TGATGCATGTCCCAGACATGTCTTATACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCGA-GC
* * * *
99059559 CGATGCCATGTCTCGGACATGGTCTTACACTGGCTCTCATAAT-GTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCG-AGC
99059607 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
99059636 AGCCTACAAT
Statistics
Matches: 208, Mismatches: 45, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
44 11 0.05
45 14 0.07
46 66 0.32
47 26 0.12
48 21 0.10
49 35 0.17
50 32 0.15
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAGC
Found at i:99059584 original size:94 final size:92
Alignment explanation
Indices: 99059428--99059638 Score: 236
Period size: 94 Copynumber: 2.3 Consensus size: 92
99059418 TATCGACGTT
99059428 ATGTCCCAGACATGGTCTTACACTA--ACACATCTCATAGCCAATGCATGTCCCAGACATGTCTT
1 ATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCAATGCATGTCCCAGACATGTCTT
* * *
99059491 ACACTGGCT-TACGT-CTCG-AGGCTGATGC
65 ACACTGGCTCT-CATAAT-GTA-GCCGATGC
* * * * * *
99059519 ATGTCCCAGACATGTCTTATACTAGCACTCGTCTCA-ATGCCGATGCCATGTCTCGGACATGGTC
1 ATGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCAATG-CATGTCCCAGACAT-GTC
99059583 TTACACTGGCTCTCATAATGTAGCCGATGC
63 TTACACTGGCTCTCATAATGTAGCCGATGC
99059613 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
99059639 CTACAATAAC
Statistics
Matches: 102, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
90 10 0.10
91 14 0.14
92 14 0.14
93 12 0.12
94 49 0.48
95 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
ATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCAATGCATGTCCCAGACATGTCTTA
CACTGGCTCTCATAATGTAGCCGATGC
Found at i:99068492 original size:46 final size:45
Alignment explanation
Indices: 99068362--99068578 Score: 156
Period size: 46 Copynumber: 4.7 Consensus size: 45
99068352 GTAAGTTGTT
*
99068362 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCT-AGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTGAG--GCC
* *
99068408 GATGCATGTCCCAGACATGTCTTACATTGGCTTACGTC-TC-GAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC--AC-TCATCTGAGGCC
* * * *
99068454 GATGTATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATC-TGAGGCC
* * * * * * *
99068500 AATGCCATGTCTCAGACATGGTCTTACATTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTGAGGCC
**
99068548 GATGCATGTCTTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
99068579 CCACAATAAC
Statistics
Matches: 137, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 13 0.09
45 15 0.11
46 53 0.39
47 25 0.18
48 28 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTGAGGCC
Found at i:99068533 original size:94 final size:92
Alignment explanation
Indices: 99068362--99068583 Score: 238
Period size: 94 Copynumber: 2.4 Consensus size: 92
99068352 GTAAGTTGTT
* *
99068362 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTAGTAGCCGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTAATAGCCAATGCATGTCCCAGACA
* *
99068425 TGTCTTACATTGGCT-TACGT-CTCGAGGCC
64 TGTCTTACATTGGCTCT-CATAAT-GAGGCC
* * * *
99068454 GATGTATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAAT-GCCAATGCCATGTCTCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATC-TAATAGCCAATG-CATGTCCCAGACA
*
99068518 TGGTCTTACATTGGCTCTCATAATGTGGCC
64 T-GTCTTACATTGGCTCTCATAATGAGGCC
** *
99068548 GATGCATGTCTTAGACATGTCTTACACTAGCCCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACA
99068584 ATAACCCATA
Statistics
Matches: 108, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
90 10 0.09
91 14 0.13
92 15 0.14
93 16 0.15
94 51 0.47
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTAATAGCCAATGCATGTCCCAGACATG
TCTTACATTGGCTCTCATAATGAGGCC
Found at i:99068671 original size:22 final size:22
Alignment explanation
Indices: 99068643--99068686 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
99068633 ACGAGAACTC
99068643 TACTATCTCTATTATCATCATA
1 TACTATCTCTATTATCATCATA
99068665 TACTATCTCTATTATCATCATA
1 TACTATCTCTATTATCATCATA
99068687 CTTTCTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (22 bp):
TACTATCTCTATTATCATCATA
Found at i:99068693 original size:20 final size:21
Alignment explanation
Indices: 99068643--99068693 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
99068633 ACGAGAACTC
99068643 TACTATCTCTATTATCATCATA
1 TACTATCTCTATTATCATCA-A
99068665 TACTATCTCTATTATCATC-A
1 TACTATCTCTATTATCATCAA
*
99068685 TACTTTCTC
1 TACTATCTC
99068694 AATTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 9 0.32
22 19 0.68
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.47
Consensus pattern (21 bp):
TACTATCTCTATTATCATCAA
Found at i:99070446 original size:15 final size:15
Alignment explanation
Indices: 99070426--99070456 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
99070416 CCTTTTAACG
99070426 GTAACTATTCCAACA
1 GTAACTATTCCAACA
*
99070441 GTAACTTTTCCAACA
1 GTAACTATTCCAACA
99070456 G
1 G
99070457 CTAGTATGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (15 bp):
GTAACTATTCCAACA
Found at i:99070619 original size:6 final size:7
Alignment explanation
Indices: 99070578--99070652 Score: 75
Period size: 7 Copynumber: 10.7 Consensus size: 7
99070568 CTTCAATCCC
*
99070578 CAATTTC
1 CAATTTT
99070585 CAATTTT
1 CAATTTT
99070592 -ATATTTT
1 CA-ATTTT
*
99070599 CAATCTT
1 CAATTTT
99070606 CAAATTTT
1 C-AATTTT
99070614 -AATTTT
1 CAATTTT
99070620 CAATTTT
1 CAATTTT
99070627 CAA-TTT
1 CAATTTT
99070633 CAAGTTTT
1 CAA-TTTT
*
99070641 CAATTCT
1 CAATTTT
99070648 CAATT
1 CAATT
99070653 ATTTTTTTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
6 13 0.22
7 33 0.57
8 12 0.21
ACGTcount: A:0.31, C:0.16, G:0.01, T:0.52
Consensus pattern (7 bp):
CAATTTT
Found at i:99084244 original size:64 final size:64
Alignment explanation
Indices: 99084165--99084292 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
99084155 GATTTTGTGT
* *
99084165 GTTTGATTGCATTTACGTTTGGTAACGCCTTGTACCCTATTCCAGTATCGAATATAGGTAAAGA
1 GTTTGATTGCATTTACATTTGGTAACGCCTTATACCCTATTCCAGTATCGAATATAGGTAAAGA
**
99084229 GTTTGATTGCATTTACATTTGGTAACGCCTTATACCCTATTCTGGTATCGAATATAGGTAAAGA
1 GTTTGATTGCATTTACATTTGGTAACGCCTTATACCCTATTCCAGTATCGAATATAGGTAAAGA
99084293 ATGTTACATT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (64 bp):
GTTTGATTGCATTTACATTTGGTAACGCCTTATACCCTATTCCAGTATCGAATATAGGTAAAGA
Found at i:99090886 original size:48 final size:47
Alignment explanation
Indices: 99090827--99090952 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 47
99090817 GCCACATTAT
99090827 GAGAGCCAGTGTAAGATCATGTCTGGGACATGCCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGCCATCGGCATTGAGAC
* * * *
99090875 GAGAGCTAGTGTAAGACATGTCTGGGGCATG-CATCGGCCTTGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCCATCGGCATTGAGAC
* *
99090921 GTA-AGCCAGTGTAATACATGTTTGGGACATGC
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGC
99090953 ATCAGCTACG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 38 0.56
47 15 0.22
48 15 0.22
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCCATCGGCATTGAGAC
Found at i:99090932 original size:46 final size:47
Alignment explanation
Indices: 99090792--99091189 Score: 209
Period size: 48 Copynumber: 8.4 Consensus size: 47
99090782 TGCGCTAGTA
* ** *
99090792 TAAGA-CATGTCTAGGACATGCATCGGCC-ACATTATG-AGAGCCAGTG
1 TAAGACCATGTCTGGGACATGCATCGGCCTTGA-GATGTA-AGCCAGTG
* * * *
99090838 TAAGATCATGTCTGGGACATGCCATCGGCATTGAGACG-AGAGCTAGTG
1 TAAGACCATGTCTGGGACATG-CATCGGCCTTGAGATGTA-AGCCAGTG
*
99090886 TAAGA-CATGTCTGGGGCATGCATCGGCCTTGAGATGTAAGCCAGTG
1 TAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCCAGTG
* * * * *
99090932 TAATA-CATGTTTGGGACATGCATCAG-CTACGAGATGT--GTCAGTG
1 TAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGTAAGCCAGTG
* * * * *
99090976 TAAGACCATGTCTGGGACATGGCATTGACACGTAT-AGATGT--GTCAATA
1 TAAGACCATGTCTGGGACAT-GCATCGGC-C-T-TGAGATGTAAGCCAGTG
* * * * *
99091024 TAAGACCATGTCTGGGACATGTCATTGGCAC-AGATATGTGAGACTAGTG
1 TAAGACCATGTCTGGGACATG-CATCGGC-CTTGAGATGTAAG-CCAGTG
* * * * *
99091073 TAAGACCATATCTGGGACATGGCATCGGCCTCGA-TTTTGATAGTCAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGATGT-A-AGCCAGTG
* * * *
99091122 TAAGACAATGTCTGAGACATGGCATC-GACTTGATGGATG--AGCAAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGCCTTGA--GATGTAAGCCAGTG
*
99091169 TAACACCATGTCTGGGACATG
1 TAAGACCATGTCTGGGACATG
99091190 GCATTGGCAT
Statistics
Matches: 278, Mismatches: 52, Indels: 44
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.04
45 15 0.05
46 65 0.23
47 53 0.19
48 72 0.26
49 59 0.21
50 3 0.01
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCCAGTG
Done.