Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 32 of 410
Found at i:8030830 original size:22 final size:22
Alignment explanation
Indices: 8030802--8030847 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
8030792 ACTCAAGGTC
8030802 TTTTTCCCACTTAAAACCCTAG
1 TTTTTCCCACTTAAAACCCTAG
*
8030824 TTTTTCCCACTTAAAACCTTAG
1 TTTTTCCCACTTAAAACCCTAG
8030846 TT
1 TT
8030848 GTTGTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTTTCCCACTTAAAACCCTAG
Found at i:8040179 original size:62 final size:62
Alignment explanation
Indices: 8040077--8040202 Score: 225
Period size: 62 Copynumber: 2.0 Consensus size: 62
8040067 GCAGAAAATC
* *
8040077 CTTGTTTGCATTAAGGGCCATGGATGCTCGTTTGAAATTGCTTGATGATGGTTCAGTCTTGG
1 CTTGTTTGCATTAAGGGCCATAGATCCTCGTTTGAAATTGCTTGATGATGGTTCAGTCTTGG
*
8040139 CTTGTTTGCATTAAGGGCCATAGATCCTCGTTTGACATTGCTTGATGATGGTTCAGTCTTGG
1 CTTGTTTGCATTAAGGGCCATAGATCCTCGTTTGAAATTGCTTGATGATGGTTCAGTCTTGG
8040201 CT
1 CT
8040203 GGGCTAGAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (62 bp):
CTTGTTTGCATTAAGGGCCATAGATCCTCGTTTGAAATTGCTTGATGATGGTTCAGTCTTGG
Found at i:8044780 original size:17 final size:17
Alignment explanation
Indices: 8044742--8044796 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
8044732 AATTGGACTA
8044742 TGTGGGCCACACG-GTCCG
1 TGTGGGCCACACGAG--CG
8044760 TGTGGGCCACACGAGCG
1 TGTGGGCCACACGAGCG
* *
8044777 TGTGGACTACACGAGCG
1 TGTGGGCCACACGAGCG
8044794 TGT
1 TGT
8044797 AGGAATTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 20 0.59
18 13 0.38
19 1 0.03
ACGTcount: A:0.16, C:0.27, G:0.38, T:0.18
Consensus pattern (17 bp):
TGTGGGCCACACGAGCG
Found at i:8055520 original size:10 final size:10
Alignment explanation
Indices: 8055491--8055549 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
8055481 TTAAATTTCA
*
8055491 AAAGTTAAAT
1 AAAGATAAAT
*
8055501 ACAA-ATAATT
1 A-AAGATAAAT
*
8055511 AAAGATAATT
1 AAAGATAAAT
8055521 AAAGATAAAT
1 AAAGATAAAT
**
8055531 ATGGATAAAT
1 AAAGATAAAT
8055541 AAAGATAAA
1 AAAGATAAA
8055550 AGCTAGAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
9 2 0.05
10 36 0.90
11 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.25
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:8055563 original size:22 final size:22
Alignment explanation
Indices: 8055535--8055585 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
8055525 ATAAATATGG
* *
8055535 ATAAATAAAGATAAAAGCTAGA
1 ATAAATAAAAATAAAAGCTAAA
8055557 ATAAATAAAAATAAAAGCTAAA
1 ATAAATAAAAATAAAAGCTAAA
8055579 ATTAAAT
1 A-TAAAT
8055586 CTAAATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.22
Consensus pattern (22 bp):
ATAAATAAAAATAAAAGCTAAA
Found at i:8056226 original size:3 final size:3
Alignment explanation
Indices: 8056220--8056261 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
8056210 TCTCTTTTTT
*
8056220 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTA TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
8056262 CTGCTGCTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.31, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:8057172 original size:12 final size:12
Alignment explanation
Indices: 8057157--8057198 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
8057147 AAAATAAAGT
8057157 AATAAATAATAA
1 AATAAATAATAA
*
8057169 AATAGATAATAA
1 AATAAATAATAA
*
8057181 AATAGATAATAA
1 AATAAATAATAA
8057193 AATAAA
1 AATAAA
8057199 AATTAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (12 bp):
AATAAATAATAA
Found at i:8060927 original size:10 final size:10
Alignment explanation
Indices: 8060900--8060958 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
8060890 TTAAATTCCA
*
8060900 AAAGATTAAT
1 AAAGATAAAT
8060910 ACAA-ATAAAT
1 A-AAGATAAAT
*
8060920 AAAGATAATT
1 AAAGATAAAT
8060930 AAAGATAAAT
1 AAAGATAAAT
*
8060940 AAGGATAAAT
1 AAAGATAAAT
8060950 AAAGATAAA
1 AAAGATAAA
8060959 AGCTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.90
11 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:8062421 original size:30 final size:30
Alignment explanation
Indices: 8062387--8062447 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8062377 ATTTTATTGC
*
8062387 TAATTTTGTTATTATTTTAAAGGCATTTGT
1 TAATTTTATTATTATTTTAAAGGCATTTGT
8062417 TAATTTTATTATTATTTTAAAGGCATTTGT
1 TAATTTTATTATTATTTTAAAGGCATTTGT
8062447 T
1 T
8062448 TGTTAAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TAATTTTATTATTATTTTAAAGGCATTTGT
Found at i:8063327 original size:30 final size:30
Alignment explanation
Indices: 8063293--8063354 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
8063283 CTTAACAAGT
8063293 AAATGCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
* *
8063323 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
8063353 AA
1 AA
8063355 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:8063428 original size:22 final size:22
Alignment explanation
Indices: 8063381--8063442 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
8063371 TAATTACAAC
* *
8063381 AAAATAGTAACAACATAATAGT
1 AAAATAGTAACAAAATAAGAGT
*
8063403 AAAATGGTAACAAAATAGAGAG-
1 AAAATAGTAACAAAATA-AGAGT
* *
8063425 AAAATAATAAGAAAATAA
1 AAAATAGTAACAAAATAA
8063443 CATCAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.03
22 29 0.88
23 3 0.09
ACGTcount: A:0.65, C:0.05, G:0.13, T:0.18
Consensus pattern (22 bp):
AAAATAGTAACAAAATAAGAGT
Found at i:8075575 original size:23 final size:23
Alignment explanation
Indices: 8075545--8075613 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
8075535 AAAGTTTAAG
8075545 TTCATGTCAATATGTCTGGTTGT
1 TTCATGTCAATATGTCTGGTTGT
8075568 TTCATGTCAATATGTCTGGTTGT
1 TTCATGTCAATATGTCTGGTTGT
8075591 TTCATGTCAATATGTCTGGTTGT
1 TTCATGTCAATATGTCTGGTTGT
8075614 GAACAAGTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TTCATGTCAATATGTCTGGTTGT
Found at i:8077731 original size:21 final size:21
Alignment explanation
Indices: 8077697--8077748 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
8077687 CAGTGGAGAT
8077697 AGGAAAAACA-GTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
8077717 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
8077738 AGGAAAAACAG
1 AGGAAAAACAG
8077749 TGGCTGTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.56, C:0.17, G:0.19, T:0.08
Consensus pattern (21 bp):
AGGAAAAACAGGTTCCAAAAC
Found at i:8081579 original size:17 final size:16
Alignment explanation
Indices: 8081557--8081601 Score: 74
Period size: 15 Copynumber: 2.8 Consensus size: 16
8081547 TGAGGAGAGG
8081557 TTTTTTCTCTTTCTTTT
1 TTTTTTCTCTTT-TTTT
8081574 TTTTTTCT-TTTTTTT
1 TTTTTTCTCTTTTTTT
8081589 TTTTTTCTCTTTT
1 TTTTTTCTCTTTT
8081602 GCTTCCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 12 0.44
16 7 0.26
17 8 0.30
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTTCTCTTTTTTT
Found at i:8081580 original size:11 final size:11
Alignment explanation
Indices: 8081566--8081594 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8081556 GTTTTTTCTC
8081566 TTTCTTTTTTT
1 TTTCTTTTTTT
8081577 TTTCTTTTTTT
1 TTTCTTTTTTT
8081588 TTT-TTTT
1 TTTCTTTT
8081595 CTCTTTTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:8085842 original size:39 final size:39
Alignment explanation
Indices: 8085796--8085967 Score: 113
Period size: 39 Copynumber: 4.2 Consensus size: 39
8085786 AATTTAATAC
8085796 TTATCTTAATAGGATTT-TATTAATTTAATATTAAAGTGT
1 TTATCTTAATA-GATTTATATTAATTTAATATTAAAGTGT
* *
8085835 TTATCTTAATATTTAATACTTATCTTAATATTAATTTGATAGTAAAGTGT
1 TTATCTTAATA---GAT--TTATATTAAT-TTAA--T-AT--TAAAGTGT
* **
8085885 TTATCTTAATAG-TTTAATATGAAATTTAAT-TT-AA-TAC
1 TTATCTTAATAGATTT-ATAT-TAATTTAATATTAAAGTGT
*
8085922 TTATCTTAATA-ATATTTTATTAATTTAATATTAAAGTGT
1 TTATCTTAATAGAT-TTATATTAATTTAATATTAAAGTGT
8085961 TTATCTT
1 TTATCTT
8085968 GATATTAAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 36
0.68 0.08 0.24
Matches are distributed among these distances:
36 8 0.08
37 18 0.17
38 6 0.06
39 20 0.19
41 3 0.03
43 3 0.03
44 8 0.08
45 11 0.11
46 4 0.04
47 1 0.01
48 2 0.02
50 19 0.18
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.52
Consensus pattern (39 bp):
TTATCTTAATAGATTTATATTAATTTAATATTAAAGTGT
Found at i:8085958 original size:126 final size:127
Alignment explanation
Indices: 8085757--8086087 Score: 422
Period size: 126 Copynumber: 2.6 Consensus size: 127
8085747 CCAAAAATAA
**
8085757 TATTATTTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAGGATTTTATTAATTT
1 TATTA-TTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
8085822 AATATTAAAGTGTTTATCTTAATATTTAATACTT-ATCTTAATATTAAT-TTG-ATAGT-AA-AG
65 AATATTAAAGTGTTTATCTTAATA-TTAA-ACTTAAT-TTAATATTAATCTTGCATA-TAAACAG
*
8085882 TG
126 TC
*
8085884 T-TTATCTTAATAGTTTAATATGAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
1 TATTAT-TTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTT
* * * * *
8085948 AATATTAAAGTGTTTATCTTGATATTAAATTTAATTTAATGTTTATCTTGCATATAAACATTC
65 AATATTAAAGTGTTTATCTTAATATTAAACTTAATTTAATATTAATCTTGCATATAAACAGTC
* * * *
8086011 TATTATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAAT
1 TATTATTTAAT-AG-TTTAATATAAAATTTAATTTAATACTTATCTTAATA-ATATTTTATTAAT
8086076 TTAATATTAAAG
63 TTAATATTAAAG
8086088 CGATTAAGCT
Statistics
Matches: 181, Mismatches: 13, Indels: 17
0.86 0.06 0.08
Matches are distributed among these distances:
124 12 0.07
125 11 0.06
126 86 0.48
127 9 0.05
128 6 0.03
129 33 0.18
130 24 0.13
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (127 bp):
TATTATTTAATAGTTTAATATAAAATTTAATTTAATACTTATCTTAATAATATTTTATTAATTTA
ATATTAAAGTGTTTATCTTAATATTAAACTTAATTTAATATTAATCTTGCATATAAACAGTC
Found at i:8086005 original size:29 final size:32
Alignment explanation
Indices: 8085939--8086002 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 32
8085929 AATAATATTT
8085939 TATT-AATTTAATATTAAAGTGTTTATCTTGA
1 TATTAAATTTAATATTAAAGTGTTTATCTTGA
8085970 TATTAAATTTAAT-TT-AA-TGTTTATCTTGCA
1 TATTAAATTTAATATTAAAGTGTTTATCTTG-A
8086000 TAT
1 TAT
8086003 AAACATTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 11 0.35
30 6 0.19
31 6 0.19
32 8 0.26
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (32 bp):
TATTAAATTTAATATTAAAGTGTTTATCTTGA
Found at i:8086060 original size:29 final size:29
Alignment explanation
Indices: 8085960--8086083 Score: 90
Period size: 29 Copynumber: 4.1 Consensus size: 29
8085950 TATTAAAGTG
* *
8085960 TTTATCTTGATATTAAATTTAATTTAATG
1 TTTATCTTAATATTAAATTTAATTTAATA
* *
8085989 TTTATCTTGCATATAAACATTCTATTATTTAATA
1 TTTATCTT-AATATTAA-ATT-TA--ATTTAATA
** *
8086023 -AGAT-TTAATATTAAATTTAATCTAATA
1 TTTATCTTAATATTAAATTTAATTTAATA
*
8086050 TTTATCTTAATATATATTATATTAATTTAATA
1 TTTATCTTAATAT-TA-AAT-TTAATTTAATA
8086082 TT
1 TT
8086084 AAAGCGATTA
Statistics
Matches: 73, Mismatches: 12, Indels: 17
0.72 0.12 0.17
Matches are distributed among these distances:
27 7 0.10
28 2 0.03
29 17 0.23
30 11 0.15
31 11 0.15
32 16 0.22
33 2 0.03
34 7 0.10
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (29 bp):
TTTATCTTAATATTAAATTTAATTTAATA
Found at i:8089887 original size:21 final size:22
Alignment explanation
Indices: 8089841--8089888 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
8089831 ATGCAAAAAG
*
8089841 ATAATAAGTTATAATAACGAAA
1 ATAATAAGTTATAATAAAGAAA
* *
8089863 ATAATAAG-TATAATAAATAAT
1 ATAATAAGTTATAATAAAGAAA
8089884 ATAAT
1 ATAAT
8089889 GATATATGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (22 bp):
ATAATAAGTTATAATAAAGAAA
Found at i:8090254 original size:20 final size:22
Alignment explanation
Indices: 8090210--8090254 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8090200 ATAACACTAC
*
8090210 ATAAATATGTACATGGGACAAT
1 ATAAATATATACATGGGACAAT
8090232 ATAAATATATACAT-GGA-AAT
1 ATAAATATATACATGGGACAAT
8090252 ATA
1 ATA
8090255 TAAGTAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 3 0.14
22 13 0.59
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (22 bp):
ATAAATATATACATGGGACAAT
Found at i:8090331 original size:27 final size:23
Alignment explanation
Indices: 8090261--8090387 Score: 89
Period size: 22 Copynumber: 5.3 Consensus size: 23
8090251 TATATAAGTA
*
8090261 ATATATAACTAGTAATATCAAAATAT
1 ATATATAA-TA-TAATATGAAAA-AT
* *
8090287 ATACATGATAGTATATATGAAAAAT
1 ATATATAATA-TA-ATATGAAAAAT
8090312 ACATGTATATAATATAATATG-AAAAT
1 --A--TATATAATATAATATGAAAAAT
*
8090338 ATATATAATATAATAT-TAAAAT
1 ATATATAATATAATATGAAAAAT
* * *
8090360 ATA-ATAATACAACATTAAAAAT
1 ATATATAATATAATATGAAAAAT
8090382 ATATAT
1 ATATAT
8090388 GATACATATA
Statistics
Matches: 85, Mismatches: 8, Indels: 19
0.76 0.07 0.17
Matches are distributed among these distances:
21 10 0.12
22 31 0.36
23 2 0.02
24 1 0.01
25 7 0.08
26 19 0.22
27 6 0.07
28 2 0.02
29 7 0.08
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATATAATATAATATGAAAAAT
Found at i:8090338 original size:13 final size:12
Alignment explanation
Indices: 8090317--8090365 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
8090307 AAAATACATG
*
8090317 TATATAATATAA
1 TATAAAATATAA
8090329 TATGAAAATAT-A
1 TAT-AAAATATAA
8090341 TAT--AATATAA
1 TATAAAATATAA
8090351 TATTAAAATATAA
1 TA-TAAAATATAA
8090364 TA
1 TA
8090366 ATACAACATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
9 5 0.16
10 3 0.10
11 1 0.03
12 7 0.23
13 15 0.48
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (12 bp):
TATAAAATATAA
Found at i:8090342 original size:22 final size:22
Alignment explanation
Indices: 8090317--8090402 Score: 99
Period size: 22 Copynumber: 4.0 Consensus size: 22
8090307 AAAATACATG
*
8090317 TATATAATATAATATGAAAATA
1 TATATAATATAATATTAAAATA
8090339 TATATAATATAATATTAAAATA
1 TATATAATATAATATTAAAATA
* *
8090361 TA-ATAATACAACATTAAAA-A
1 TATATAATATAATATTAAAATA
8090381 TATAT-ATGATACATA-TAAAATA
1 TATATAAT-ATA-ATATTAAAATA
8090403 CAACATTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
20 5 0.09
21 24 0.44
22 26 0.47
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.35
Consensus pattern (22 bp):
TATATAATATAATATTAAAATA
Found at i:8090427 original size:32 final size:32
Alignment explanation
Indices: 8090344--8090432 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 32
8090334 AAATATATAT
*
8090344 AATATAATATTAAAATATAATAATACAACATTAAA
1 AATAT-ATA-TAACATATAA-AATACAACATTAAA
8090379 AATATATATGATACATATAAAATACAACATTAAA
1 AATATATAT-A-ACATATAAAATACAACATTAAA
*
8090413 AGTATATATAACATATAAAA
1 AATATATATAACATATAAAA
8090433 ATGTATATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
32 10 0.20
33 2 0.04
34 26 0.52
35 12 0.24
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (32 bp):
AATATATATAACATATAAAATACAACATTAAA
Found at i:8090438 original size:21 final size:18
Alignment explanation
Indices: 8090410--8090449 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 18
8090400 ATACAACATT
8090410 AAAAGTATATATAACATATA
1 AAAAGTATATA-AA-ATATA
8090430 AAAATGTATATAAAATATA
1 AAAA-GTATATAAAATATA
8090449 A
1 A
8090450 TACCTAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (18 bp):
AAAAGTATATAAAATATA
Found at i:8090439 original size:19 final size:19
Alignment explanation
Indices: 8090328--8090449 Score: 60
Period size: 19 Copynumber: 6.3 Consensus size: 19
8090318 ATATAATATA
* *
8090328 ATATGAAAATATATATAAT
1 ATATAAAAATATATATAAC
8090347 ATAATATTAAAATATAATAATACAAC
1 AT-ATA--AAAATAT-AT-AT--AAC
8090373 AT-TAAAAATATATATGATAC
1 ATATAAAAATATATAT-A-AC
*
8090393 ATAT---AA-A-ATACAAC
1 ATATAAAAATATATATAAC
*
8090407 AT-TAAAAGTATATATAAC
1 ATATAAAAATATATATAAC
* *
8090425 ATATAAAAATGTATATAAA
1 ATATAAAAATATATATAAC
8090444 ATATAA
1 ATATAA
8090450 TACCTAAGTA
Statistics
Matches: 79, Mismatches: 9, Indels: 30
0.67 0.08 0.25
Matches are distributed among these distances:
13 1 0.01
14 4 0.05
15 1 0.01
16 4 0.05
17 2 0.03
18 10 0.13
19 22 0.28
20 8 0.10
21 3 0.04
22 14 0.18
23 2 0.03
24 4 0.05
26 4 0.05
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
ATATAAAAATATATATAAC
Found at i:8093724 original size:9 final size:9
Alignment explanation
Indices: 8093710--8093750 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
8093700 ATAAGTATAA
8093710 AATTAACCG
1 AATTAACCG
*
8093719 AATTAATCG
1 AATTAACCG
*
8093728 AATTACCCG
1 AATTAACCG
*
8093737 AACTAACCG
1 AATTAACCG
8093746 AATTA
1 AATTA
8093751 TTTGTATAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:8093783 original size:5 final size:6
Alignment explanation
Indices: 8093768--8093808 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
8093758 AAAATTATAT
*
8093768 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
8093809 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:8093862 original size:18 final size:18
Alignment explanation
Indices: 8093836--8093871 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8093826 TTTTATGATG
*
8093836 GGGTTGGGTAATTGGGTT
1 GGGTGGGGTAATTGGGTT
*
8093854 GGGTGGGGTACTTGGGTT
1 GGGTGGGGTAATTGGGTT
8093872 AATATATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.03, G:0.53, T:0.36
Consensus pattern (18 bp):
GGGTGGGGTAATTGGGTT
Found at i:8095613 original size:33 final size:33
Alignment explanation
Indices: 8095565--8095627 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
8095555 TCCAATCTTA
*
8095565 TTTGTTTTCAGATTTGGGAA-GAAAACAGTCCT
1 TTTGTTTTCAGATTTGAGAATGAAAACAGTCCT
* *
8095597 TTTGTTTTTCATATTTGAGAATTAAAACAGT
1 TTTG-TTTTCAGATTTGAGAATGAAAACAGT
8095628 GATAATTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 4 0.15
33 14 0.54
34 8 0.31
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (33 bp):
TTTGTTTTCAGATTTGAGAATGAAAACAGTCCT
Found at i:8099149 original size:25 final size:26
Alignment explanation
Indices: 8099083--8099163 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
8099073 ATGAAATTCC
8099083 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8099109 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8099135 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8099160 ATCA
1 ATCA
8099164 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 24 0.44
26 31 0.56
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8102284 original size:40 final size:40
Alignment explanation
Indices: 8102224--8102366 Score: 137
Period size: 41 Copynumber: 3.5 Consensus size: 40
8102214 TCAAAAATTG
* * *
8102224 TAAAACACATAGCAGTAGCGGTGTTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCATTAGCGGTGTTTTACCAAAAACGCCGC
* **
8102265 TAAAAACAGAGCAATAGCGGTGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGTGTTTTA-CCAAAAACGCCGC
* * * *
8102306 AAAAAACAGAGCATTAACGGCGCTTGTT-GC-AAAACGCCGC
1 TAAAAACAGAGCATTAGCGGTG-TT-TTACCAAAAACGCCGC
8102346 TAAAAACCAGAGCATTAGCGG
1 TAAAAA-CAGAGCATTAGCGG
8102367 CGCTTTTGGA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
40 35 0.41
41 46 0.54
42 2 0.02
43 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGTGTTTTACCAAAAACGCCGC
Found at i:8102368 original size:41 final size:41
Alignment explanation
Indices: 8102254--8102432 Score: 195
Period size: 41 Copynumber: 4.4 Consensus size: 41
8102244 GTGTTTTACC
* * * *
8102254 AAAAACGCCACTAAAAA-CAGAGCAATAGCGGTG-TTTTAGTA
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-G-G
* *
8102295 AAAAACGCCGC-AAAAAACAGAGCATTAACGGCGCTTGTT-G
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTT-TTGG
*
8102335 CAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
*** *
8102376 AAAAATATCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGG
1 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
*
8102417 TAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
8102433 GTCATATAAC
Statistics
Matches: 116, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
40 17 0.15
41 95 0.82
42 2 0.02
43 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.18
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
Found at i:8102594 original size:7 final size:7
Alignment explanation
Indices: 8102579--8102632 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
8102569 TTAATTATCA
*
8102579 TTATAGT
1 TTATGGT
8102586 TTATGGT
1 TTATGGT
8102593 TTATGGT
1 TTATGGT
* *
8102600 TTAAGAT
1 TTATGGT
*
8102607 ATATGGT
1 TTATGGT
*
8102614 TTAGGGT
1 TTATGGT
*
8102621 TTAAGGT
1 TTATGGT
8102628 TTATG
1 TTATG
8102633 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:8102611 original size:21 final size:21
Alignment explanation
Indices: 8102587--8102671 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
8102577 CATTATAGTT
*
8102587 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
8102608 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
**
8102629 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
8102654 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
8102672 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:8102650 original size:46 final size:46
Alignment explanation
Indices: 8102598--8102687 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
8102588 ATGGTTTATG
*
8102598 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
8102644 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
8102688 GTATTTGAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.42
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
Found at i:8102781 original size:7 final size:7
Alignment explanation
Indices: 8102769--8102842 Score: 69
Period size: 7 Copynumber: 10.3 Consensus size: 7
8102759 TTAATGTGTA
8102769 AGGGTTT
1 AGGGTTT
8102776 AGGGTTT
1 AGGGTTT
*
8102783 AGGGTTA
1 AGGGTTT
8102790 AGGGTTT
1 AGGGTTT
*
8102797 AGAGTTT
1 AGGGTTT
*
8102804 AGTGTTT
1 AGGGTTT
*
8102811 ATGGG-AT
1 A-GGGTTT
*
8102818 AGGGGTTA
1 A-GGGTTT
8102826 AGAGGTTT
1 AG-GGTTT
8102834 AGGGTTT
1 AGGGTTT
8102841 AG
1 AG
8102843 ATTAATTAGT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
7 45 0.83
8 9 0.17
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (7 bp):
AGGGTTT
Found at i:8106067 original size:26 final size:26
Alignment explanation
Indices: 8106031--8106192 Score: 245
Period size: 26 Copynumber: 6.2 Consensus size: 26
8106021 CATGAAATTC
*
8106031 TTATCATGAAATATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
*
8106057 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
8106083 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
8106109 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
8106135 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
8106161 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
8106187 TTATCA
1 TTATCA
8106193 ATTTGTATCA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
26 124 0.99
27 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:8106164 original size:78 final size:78
Alignment explanation
Indices: 8106031--8106192 Score: 279
Period size: 78 Copynumber: 2.1 Consensus size: 78
8106021 CATGAAATTC
* *
8106031 TTATCATGAAATATTTACCTAACTCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
8106096 TTTACCTAACCTA
66 TTTACCTAACCTA
* * *
8106109 TTATCATGAAGCATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
8106174 TTTACCTAACCTA
66 TTTACCTAACCTA
8106187 TTATCA
1 TTATCA
8106193 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
TTTACCTAACCTA
Found at i:8107289 original size:15 final size:15
Alignment explanation
Indices: 8107269--8107299 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8107259 TTGAAGGTAA
8107269 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
8107284 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
8107299 C
1 C
8107300 TAATTCAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.29, G:0.13, T:0.52
Consensus pattern (15 bp):
CCTACTGGTTTTCTT
Found at i:8108527 original size:12 final size:12
Alignment explanation
Indices: 8108510--8108559 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
8108500 AGTTGCTGGA
8108510 AATTGAGATGTT
1 AATTGAGATGTT
*
8108522 AATTGAGGTGTAT
1 AATTGAGATGT-T
* *
8108535 AAAT--GTTGTT
1 AATTGAGATGTT
8108545 AATTGAGATGTT
1 AATTGAGATGTT
8108557 AAT
1 AAT
8108560 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 18 0.60
13 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (12 bp):
AATTGAGATGTT
Found at i:8108563 original size:23 final size:23
Alignment explanation
Indices: 8108518--8108563 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8108508 GAAATTGAGA
*
8108518 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAGATGTATAAATGT
8108541 TGTTAATTGAGATGT-TAATATGT
1 TGTTAATTGAGATGTATAA-ATGT
8108564 GTGTGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (23 bp):
TGTTAATTGAGATGTATAAATGT
Found at i:8108568 original size:2 final size:2
Alignment explanation
Indices: 8108561--8108601 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8108551 GATGTTAATA
8108561 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8108602 CCCTTCTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:8108988 original size:23 final size:23
Alignment explanation
Indices: 8108962--8109315 Score: 289
Period size: 23 Copynumber: 15.4 Consensus size: 23
8108952 AAATGTTGTT
8108962 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTAAAGTGCTGCA
*
8108985 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
8109008 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
8109031 AATTGAAGTGTTAGAGTGCTGTA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
8109054 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
8109077 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGCA
* **
8109100 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGCA
*
8109123 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
8109146 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
* *
8109169 AATTGAAGTGCTTAAA-TGTTACA
1 AATTGAAGTG-TTAAAGTGCTGCA
* ***
8109192 AATTGAAGTGCTATAAA-T-ATTTT
1 AATTGAAGTG-T-TAAAGTGCTGCA
*
8109215 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
8109238 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
8109261 AATTGAAGTATTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
8109284 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
8109307 AATTGAAGT
1 AATTGAAGT
8109316 TATGGATTAT
Statistics
Matches: 266, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
21 4 0.02
22 20 0.08
23 214 0.80
24 27 0.10
25 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGCA
Found at i:8109020 original size:46 final size:45
Alignment explanation
Indices: 8108972--8109315 Score: 325
Period size: 46 Copynumber: 7.5 Consensus size: 45
8108962 AATTGAGATG
* * *
8108972 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAACTG-
1 TTAAA-TGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGT
* * * *
8109018 TTAAAGTGCTGCAAATTGAAGTGTTAGAGTGCTGTAAATTGGAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGTTA-AATGCTGCAAATTGAAGTGT
* * * ** *
8109065 TTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGT
1 TTAAATGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAG-TGT
* * *
8109111 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
* * *
8109157 TTGAATGCTGTAAATTGAAGTGCTTAAATGTTACAAATTGAAGTGCT
1 TTAAATGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTG-T
* * * * *
8109204 ATAAAT-ATTTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
* *
8109249 TTTAATGCTGTAAATTGAAGTATTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
*
8109295 TTTAATGCTGTAAATTGAAGT
1 TTAAATGCTGTAAATTGAAGT
8109316 TATGGATTAT
Statistics
Matches: 250, Mismatches: 38, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
45 18 0.07
46 213 0.85
47 19 0.08
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (45 bp):
TTAAATGCTGTAAATTGAAGTGTTAAATGCTGCAAATTGAAGTGT
Found at i:8109127 original size:92 final size:91
Alignment explanation
Indices: 8108978--8109313 Score: 365
Period size: 92 Copynumber: 3.7 Consensus size: 91
8108968 GATGTTAAAG
* * * *
8108978 TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAACTG-TTAAAGTGCTGCAAATTGAAGTGT
1 TGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAATGT
* * *
8109042 TAGAGTGCTGTAAATTGGAGTGTTTAA
65 TAAAGTGCTGCAAATTGAAGTGTTTAA
* ** * * *
8109069 GTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGTTTAAATGTTGTTAATTGAAATG
1 -TGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAG-TGTTTAAATGCTGTAAATTGAAATG
8109133 TTAAAGTGCTGCAAATTGAAGTGTTTGAA
64 TTAAAGTGCTGCAAATTGAAGTGTTT-AA
* * * * * * * *
8109162 TGCTGTAAATTGAAGTGCTTAAATGTTACAAATTGAAGTGCTATAAAT-ATTTTAATTGAAATGT
1 TGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTG-TTTAAATGCTGTAAATTGAAATGT
8109226 TAAAGTGCTGCAAATTGAAGTGTTTTAA
65 TAAAGTGCTGCAAATTGAAGTG-TTTAA
* * *
8109254 TGCTGTAAATTGAAGT-ATTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAA
1 TGCTGCAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAA
8109314 GTTATGGATT
Statistics
Matches: 205, Mismatches: 31, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
91 11 0.05
92 176 0.86
93 18 0.09
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (91 bp):
TGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGTT
AAAGTGCTGCAAATTGAAGTGTTTAA
Found at i:8111217 original size:19 final size:19
Alignment explanation
Indices: 8111194--8111240 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8111184 ATTTAATCTA
*
8111194 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
8111212 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
8111232 ATTTTTATT
1 ATTTTTATT
8111241 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:8111490 original size:43 final size:43
Alignment explanation
Indices: 8111377--8111482 Score: 149
Period size: 43 Copynumber: 2.5 Consensus size: 43
8111367 TTTAAAATTT
* ** *
8111377 CATGACTTTTAGCGGCGTTTGTGAAAAAAGCGCCGTTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGC
* * *
8111420 CATAACCTTTAGCGACGTTTGTGTGAAAAGTGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGC
8111463 CATGACCTTTAGCGGCGTTT
1 CATGACCTTTAGCGGCGTTT
8111483 ATTTGAAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGC
Found at i:8111780 original size:9 final size:9
Alignment explanation
Indices: 8111766--8111791 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8111756 CATATACTAA
8111766 TAATAATAG
1 TAATAATAG
8111775 TAATAATAG
1 TAATAATAG
8111784 TAATAATA
1 TAATAATA
8111792 AAGAGATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (9 bp):
TAATAATAG
Found at i:8112313 original size:25 final size:26
Alignment explanation
Indices: 8112272--8112336 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
8112262 AGAAAACTAT
*
8112272 TACAATATTACATAAATATATACCTA
1 TACAATATTACATAAATATATACATA
8112298 TACATATATTA-A-AAATATATACATA
1 TACA-ATATTACATAAATATATACATA
* *
8112323 TATAATATGACATA
1 TACAATATTACATA
8112337 TACCAAGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 5 0.15
25 16 0.48
26 6 0.18
27 6 0.18
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.35
Consensus pattern (26 bp):
TACAATATTACATAAATATATACATA
Found at i:8113895 original size:40 final size:40
Alignment explanation
Indices: 8113850--8113986 Score: 118
Period size: 49 Copynumber: 3.2 Consensus size: 40
8113840 GGGTTGTAAT
8113850 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTG
1 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTG
* * * *
8113890 GGGTTTGGGCTGGTGATATTTGGGCTTAATGGGTTA-AT-GGTTTTATAAG
1 GGGTTTGGGCT--T-CT-GTTGGG-TT-A--GTTTAGATGGGTATT-T--G
8113939 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTT-
1 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTG
8113978 GGGTTTGGG
1 GGGTTTGGG
8113987 TAAGGGTTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 27
0.68 0.07 0.24
Matches are distributed among these distances:
39 9 0.12
40 11 0.14
41 4 0.05
42 4 0.05
43 7 0.09
44 7 0.09
45 7 0.09
46 7 0.09
47 4 0.05
48 4 0.05
49 12 0.16
ACGTcount: A:0.12, C:0.04, G:0.40, T:0.43
Consensus pattern (40 bp):
GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTG
Found at i:8113984 original size:39 final size:40
Alignment explanation
Indices: 8113850--8113986 Score: 109
Period size: 40 Copynumber: 3.2 Consensus size: 40
8113840 GGGTTGTAAT
*
8113850 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTG
1 GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTA
* * * *
8113890 GGGTTTGGGCTGGTGATATTTGGGCTTAATGGGTTA-AT-GGTTTTATAA
1 GGGTTTGGGCT--T-CT-GTTGGG-TT-A--GTTTAGATGGGTATT-T-A
8113938 GGGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTT-
1 -GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTA
8113978 GGGTTTGGG
1 GGGTTTGGG
8113987 TAAGGGTTGA
Statistics
Matches: 75, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
39 9 0.12
40 11 0.15
41 4 0.05
42 4 0.05
43 7 0.09
44 7 0.09
45 7 0.09
46 7 0.09
47 4 0.05
48 4 0.05
49 11 0.15
ACGTcount: A:0.12, C:0.04, G:0.40, T:0.43
Consensus pattern (40 bp):
GGGTTTGGGCTTCTGTTGGGTTAGTTTAGATGGGTATTTA
Found at i:8116209 original size:30 final size:29
Alignment explanation
Indices: 8116174--8116267 Score: 86
Period size: 30 Copynumber: 3.3 Consensus size: 29
8116164 AGAAGAAAAT
8116174 ATATATACACAAAATAATATAAAATCAATA
1 ATATATACACAAAATAATA-AAAATCAATA
* * *
8116204 ATATATATACATAATAATAATAAT--A-A
1 ATATATACACAAAATAATAAAAATCAATA
* * *
8116230 ATATTTACATAAAATAATAGGAAATCAATA
1 ATATATACACAAAATAATA-AAAATCAATA
*
8116260 ATGTATAC
1 ATATATAC
8116268 TTAGAATAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
26 16 0.33
27 4 0.08
29 5 0.10
30 24 0.49
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (29 bp):
ATATATACACAAAATAATAAAAATCAATA
Found at i:8116219 original size:16 final size:16
Alignment explanation
Indices: 8116171--8116222 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
8116161 CTTAGAAGAA
*
8116171 AATATATATACACAA-
1 AATATATATACATAAT
*
8116186 AATA-ATATAAAATCAAT
1 AATATATAT-ACAT-AAT
8116203 AATATATATACATAAT
1 AATATATATACATAAT
8116219 AATA
1 AATA
8116223 ATAATAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
14 4 0.13
15 6 0.20
16 9 0.30
17 7 0.23
18 4 0.13
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (16 bp):
AATATATATACATAAT
Found at i:8116276 original size:56 final size:56
Alignment explanation
Indices: 8116174--8116283 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 56
8116164 AGAAGAAAAT
* * *
8116174 ATATATACACAAAATAATATAAAATCAATAATATATATACATAATAATAATAATAA
1 ATATATACACAAAATAATAGAAAATCAATAATATATATACAGAATAAAAATAATAA
* * * * *
8116230 ATATTTACATAAAATAATAGGAAATCAATAATGTATACT-TAGAATAAAAATAAT
1 ATATATACACAAAATAATAGAAAATCAATAATATATA-TACAGAATAAAAATAAT
8116284 TTAGTATAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
56 44 0.98
57 1 0.02
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (56 bp):
ATATATACACAAAATAATAGAAAATCAATAATATATATACAGAATAAAAATAATAA
Found at i:8119585 original size:19 final size:19
Alignment explanation
Indices: 8119573--8119610 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8119563 ATACTTTTGA
8119573 AATTTAATCATACTTCTAT
1 AATTTAATCATACTTCTAT
8119592 AATTTAATCATACTTCTAT
1 AATTTAATCATACTTCTAT
8119611 GTTTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTTAATCATACTTCTAT
Found at i:8122680 original size:46 final size:46
Alignment explanation
Indices: 8122630--8122721 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
8122620 GTGCATCTTG
* * *
8122630 GGATGGAAACAATGGGCTGGACCAATTTTAAGTGGTTTTAAGCTTA
1 GGATGGAAACAATGGGCTGGACCAAGTTTAAATGGTTTTAAACTTA
* *
8122676 GGATGGAAACAATGGGCTGGATCTAGTTTAAATGGTTTTAAACTTA
1 GGATGGAAACAATGGGCTGGACCAAGTTTAAATGGTTTTAAACTTA
8122722 AAGATAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (46 bp):
GGATGGAAACAATGGGCTGGACCAAGTTTAAATGGTTTTAAACTTA
Found at i:8123072 original size:2 final size:2
Alignment explanation
Indices: 8123065--8123102 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8123055 CTTTTAAACA
8123065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8123103 TTGTATGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8125563 original size:5 final size:5
Alignment explanation
Indices: 8125553--8125614 Score: 63
Period size: 5 Copynumber: 12.4 Consensus size: 5
8125543 AAGAAAATAT
* * * *
8125553 TATTA TATTA TATTA TATTA TATTA CATTA TATGTA AAATA TA-TA TCTTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT-TA TATTA TATTA TATTA
*
8125603 TATTA TAATA TA
1 TATTA TATTA TA
8125615 ATAATAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
4 3 0.06
5 41 0.87
6 3 0.06
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (5 bp):
TATTA
Found at i:8125651 original size:12 final size:12
Alignment explanation
Indices: 8125636--8125660 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8125626 AAAACATAAA
8125636 AGAAAAAGAAAG
1 AGAAAAAGAAAG
8125648 AGAAAAAGAAAG
1 AGAAAAAGAAAG
8125660 A
1 A
8125661 ATAGAATTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAAAG
Found at i:8125702 original size:13 final size:14
Alignment explanation
Indices: 8125686--8125720 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
8125676 AAAACAAGGG
8125686 AAAGAAAGAAA-AA
1 AAAGAAAGAAACAA
8125699 AAAGAAAGAAACAA
1 AAAGAAAGAAACAA
8125713 AAAGAAAG
1 AAAGAAAG
8125721 GAGAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAACAA
Found at i:8125707 original size:17 final size:18
Alignment explanation
Indices: 8125685--8125720 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
8125675 CAAAACAAGG
*
8125685 GAAAGAAAGAAAAA-AAA
1 GAAAGAAACAAAAAGAAA
8125702 GAAAGAAACAAAAAGAAA
1 GAAAGAAACAAAAAGAAA
8125720 G
1 G
8125721 GAGAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (18 bp):
GAAAGAAACAAAAAGAAA
Found at i:8125860 original size:18 final size:18
Alignment explanation
Indices: 8125834--8125868 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8125824 TGATTTATAT
8125834 TGAAATTTTAGAAGTTGG
1 TGAAATTTTAGAAGTTGG
*
8125852 TGAATTTTTAGAAGTTG
1 TGAAATTTTAGAAGTTG
8125869 ATCATGATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
TGAAATTTTAGAAGTTGG
Found at i:8127409 original size:21 final size:21
Alignment explanation
Indices: 8127380--8127423 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8127370 AATATATATC
*
8127380 ATAAAATAGCACATAAAAGAA
1 ATAAAATAGCACATAAAAAAA
* *
8127401 ATAACATAGCATATAAAAAAA
1 ATAAAATAGCACATAAAAAAA
8127422 AT
1 AT
8127424 GAAACTATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.66, C:0.09, G:0.07, T:0.18
Consensus pattern (21 bp):
ATAAAATAGCACATAAAAAAA
Found at i:8131365 original size:46 final size:45
Alignment explanation
Indices: 8131314--8131480 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 45
8131304 GACGAGGGCT
8131314 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * *
8131360 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC
* * * * * *
8131406 AGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC
*
8131450 AGTGTAAGACATGTCTGGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
8131481 ACGGTTACAT
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.02
44 33 0.31
46 70 0.65
47 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:8131410 original size:92 final size:90
Alignment explanation
Indices: 8131263--8131474 Score: 246
Period size: 92 Copynumber: 2.3 Consensus size: 90
8131253 AGATTTGTGT
* * * * *
8131263 GCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGT
8131328 CTGGGACATGCATCAGCCAC-AGTATGAGA
64 CTGGGACATGCATCAGCCACGAG-AT--GA
* * * *
8131357 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTCAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
* * * *
8131422 GGGACATGCGTCGGCTACGAGATGT
66 GGGACATGCATCAGCCACGAGATGA
*
8131447 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
8131475 GTCAGCACGG
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
90 28 0.27
92 49 0.48
93 14 0.14
94 12 0.12
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCAGCCACGAGATGA
Found at i:8131511 original size:46 final size:43
Alignment explanation
Indices: 8131314--8131517 Score: 171
Period size: 46 Copynumber: 4.5 Consensus size: 43
8131304 GACGAGGGCT
* * * *
8131314 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CAT--GTG-C
* * *
8131360 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T-G-C
* * *
8131406 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGC
1 AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
8131449 TAGTGTAAGACATGTCTGGGACATGCGTCAGC-ACGGTTACATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCGTCAGCTAC-G--ACATGTG-C
*
8131496 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
8131518 CGGCATCGAC
Statistics
Matches: 138, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
43 3 0.02
44 32 0.23
45 3 0.02
46 97 0.70
47 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC
Found at i:8131517 original size:90 final size:91
Alignment explanation
Indices: 8131314--8131480 Score: 221
Period size: 90 Copynumber: 1.8 Consensus size: 91
8131304 GACGAGGGCT
8131314 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTAT-AGAGCCAGTGTAAGACATGTCTGGG
* *
8131379 ACATGCATCGGCCTCGAGATGATAGCC
65 ACATGCATCAGCCTCGACATGATAGCC
* * * * * *
8131406 AGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAG-AT-GTGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATAGAGCCAGTGTAAGACATGTCTGGG
*
8131469 ACATGCGTCAGC
65 ACATGCATCAGC
8131481 ACGGTTACAT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
90 32 0.48
92 32 0.48
93 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATAGAGCCAGTGTAAGACATGTCTGGGA
CATGCATCAGCCTCGACATGATAGCC
Found at i:8137119 original size:22 final size:21
Alignment explanation
Indices: 8137089--8137154 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
8137079 TACAAATTAA
8137089 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8137111 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
8137132 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8137151 ATCT
1 ATCT
8137155 AAGGTTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8137141 original size:19 final size:19
Alignment explanation
Indices: 8137106--8137203 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
8137096 AGATTACAAG
8137106 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8137127 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
8137146 ATCATATCTAAGGTTG--T
1 ATCATATCTAAGATTGCAT
8137163 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8137182 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8137201 ATC
1 ATC
8137204 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8137212 original size:36 final size:35
Alignment explanation
Indices: 8137106--8137213 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
8137096 AGATTACAAG
*
8137106 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATC--CT-TAAGATTGCAT
*
8137146 ATCATATCTAAGGTTGTATCATAT-C-TAAGATTGCAT
1 ATCATATCTAAGATTG---CATATCCTTAAGATTGCAT
8137182 ATCATATCTAAGATTGCATATCCTTAAAGATT
1 ATCATATCTAAGATTGCATATCCTT-AAGATT
8137214 ATATTTCCAT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 5 0.08
34 1 0.02
35 1 0.02
36 32 0.54
38 6 0.10
39 1 0.02
40 8 0.14
41 5 0.08
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (35 bp):
ATCATATCTAAGATTGCATATCCTTAAGATTGCAT
Found at i:8137856 original size:175 final size:174
Alignment explanation
Indices: 8137644--8138136 Score: 707
Period size: 176 Copynumber: 2.8 Consensus size: 174
8137634 GTAAGCACGT
* * * * * *
8137644 GAAAGCCAAATCTGCTGTGTCCTCAATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
8137709 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCAAAATGGAG
66 ATCTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCAAAATGGAG
* *
8137774 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCC
*
8137819 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
8137884 ATCTGATTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGA
66 ATCTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTC-AAAATGGA
* * **
8137949 GACGCTAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATTT
129 GATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCC
* *
8137995 GAAAGTCAGATCTACTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* *
8138060 ATCTACTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTTCGTCAAAT
66 ATCTGCTTCAGT-AAAACATCTGAAGGTTAGATCTGCTATG---T--ATCTACTCTCCGTCAAA-
8138125 ATGGAGATGCCA
124 ATGGAGATGCCA
8138137 AATATGTTTC
Statistics
Matches: 281, Mismatches: 28, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
175 107 0.38
176 149 0.53
177 1 0.00
179 1 0.00
180 2 0.01
181 21 0.07
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (174 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCAAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCC
Found at i:8138062 original size:89 final size:88
Alignment explanation
Indices: 8137605--8138108 Score: 308
Period size: 87 Copynumber: 5.8 Consensus size: 88
8137595 CAATACAGAG
* * * * * * * *
8137605 ATGCCAAATCATCTTAGATCTGC-TTCAGCGTAAGCA-CGTGAAAGCCAAATCTGCTGTGTCCTC
1 ATGCCAAATCATCTTGGATCTGCTTTCAGTGAAAACATC-TGAAAGTCAGATCTGCTATGTCTTC
* * *
8137668 AATTTGCTCCTTGTGAACACAAGG
65 GATTTGCTCCTTGTAAACACAAGA
* * *
8137692 ATGCCAAATCATCTTGGATCTGC-TTCAGT-AAAATCATCTGAAGGTTAGATCTGCTATGT-ATC
1 ATGCCAAATCATCTTGGATCTGCTTTCAGTGAAAA-CATCTGAAAGTCAGATCTGCTATGTCTTC
* * **
8137754 TA-CT-CTCC--GTCAAA-A-TGGA
65 GATTTGCTCCTTGT-AAACACAAGA
* ** * * *
8137773 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATG
1 -ATGCCAAATC----ATCTTGGATCTGCTTT-CAGTGAAAACATCTGAAAGTCAGATCTGCTATG
*
8137838 TCTTCGATTTGTTCCTTGTAAACACAAGA
60 TCTTCGATTTGCTCCTTGTAAACACAAGA
* * * *
8137867 ATGCCAAATCATCTTGGATCTG-ATTCAGT-ATAAACATCTGAAGGTTAGATCTGCTATGT-GTC
1 ATGCCAAATCATCTTGGATCTGCTTTCAGTGA-AAACATCTGAAAGTCAGATCTGCTATGTCTTC
* * * * * * * *
8137929 TGCTCTCCGTCGAATATGGAGACGCTAG-
65 -GATTTGC-TC--CT-TGTAAACACAAGA
** * * * *
8137957 AT--C-TGTTATCTTGGATCTGCTTTGATGTGAAAACATTTGAAAGTCAGATCTACTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTTCA-GTGAAAACATCTGAAAGTCAGATCTGCTATGTCTTC
8138019 GATTTGCTCCTTGTAAACACAAGA
65 GATTTGCTCCTTGTAAACACAAGA
* * * *
8138043 ATGCCAAATCATCTTGGATCTAC-TTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTCTTCG
1 ATGCCAAATCATCTTGGATCTGCTTTCAGTGAAAACATCTGAAAGTCAGATCTGCTATGTCTTCG
8138107 AT
66 AT
8138109 CTACTCTTCG
Statistics
Matches: 308, Mismatches: 77, Indels: 64
0.69 0.17 0.14
Matches are distributed among these distances:
81 1 0.00
82 12 0.04
83 2 0.01
84 4 0.01
85 9 0.03
86 24 0.08
87 122 0.40
88 38 0.12
89 61 0.20
90 7 0.02
91 11 0.04
92 3 0.01
93 12 0.04
94 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (88 bp):
ATGCCAAATCATCTTGGATCTGCTTTCAGTGAAAACATCTGAAAGTCAGATCTGCTATGTCTTCG
ATTTGCTCCTTGTAAACACAAGA
Found at i:8138447 original size:84 final size:84
Alignment explanation
Indices: 8138280--8139961 Score: 2464
Period size: 84 Copynumber: 20.1 Consensus size: 84
8138270 ATCATCTTGG
* * * *
8138280 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
*
8138343 AGATCTTCAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
8138365 ACCCTAGTGCTTAAGGGATTAAGGCG-GATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCGAG-TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
*
8138429 ATCTACAAATTTAACCTGTT
65 ATCTGCAAATTTAACCTGTT
* *
8138449 ACCATACTGCTTAGGGGATTAAGGCGAGT-TGTCGACGATCTGCTCCGCTACTGCTTAGGGAGAT
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCT-T---CGATCTGCTCCACTACTGCTTAGGGAGAT
*
8138513 AAGATCTGC-----GAACCTGTT
62 AAGATCTGCAAATTTAACCTGTT
* *
8138531 ACTCTACTGCATAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8138596 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * *
8138615 ACCCTACCGCTTAGGAGATTAAGGCGAGTCTTCAATCTTCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8138680 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
8138699 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8138764 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8138783 ACCCTATTGCTTA-GGGATTAAGGTGAGT-TGTCGAGGATCTGCTCCGCTACTGCTTAGGGAGAT
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCT-TC---GATCTGCTCCACTACTGCTTAGGGAGAT
*
8138846 AAGATCTGC-----GAACCTGTT
62 AAGATCTGCAAATTTAACCTGTT
8138864 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8138929 TCTGCAAATTTAACTTGTT
66 TCTGCAAATTTAACCTGTT
*
8138948 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8139013 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
8139032 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8139097 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8139116 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
8139181 TCTACAAATTTAACTTGTT
66 TCTGCAAATTTAACCTGTT
* *
8139200 ACCCTACTGCTTAGGGGATTAAGGCGAGTTGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGA---GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
**
8139265 AGATCTG-----GGAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
8139282 ACCCTACTGCTTAGGGAATTAAGACGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8139347 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
8139366 ACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCAATCTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
**
8139431 AGATCT----A-CGAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* *
8139448 ACCCTACTGCTTAGGGGATTAAAGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8139513 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8139532 ACCCTACTGCTTAGGGGATTAAGGCGAGCCTTTGATATGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8139597 TCTGCAAATTTAACCTGCT
66 TCTGCAAATTTAACCTGTT
* *
8139616 ACCTTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8139681 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
8139700 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
8139765 TCTGCAGATTTAACCTGCT
66 TCTGCAAATTTAACCTGTT
8139784 ACCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8139848 TCTGCAAATTTAACCCGTT
66 TCTGCAAATTTAACCTGTT
* *
8139867 ACCCTACTGCTTAGGGGATTAAGGCGAATCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8139932 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
8139951 ACCCTACTGCT
1 ACCCTACTGCT
8139962 ATGTAACACC
Statistics
Matches: 1446, Mismatches: 109, Indels: 85
0.88 0.07 0.05
Matches are distributed among these distances:
79 148 0.10
81 22 0.02
82 145 0.10
83 100 0.07
84 866 0.60
85 24 0.02
86 35 0.02
87 106 0.07
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:8138670 original size:41 final size:42
Alignment explanation
Indices: 8138534--8139927 Score: 170
Period size: 41 Copynumber: 33.4 Consensus size: 42
8138524 ACCTGTTACT
* * * *
8138534 CTACTGCATAGGG-GATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8138575 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
*
8138616 CCCTACCGCTTA-GGAGATTAAGGCGAGTCTTCAATCTTCTCTA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8138659 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* * *
8138700 CCCTACTGCTTAGGG-GATTAAGGCGGGTCTTCAATCTGCTCCA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8138743 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* * * **
8138784 CCCTATTGCTTA-GG-GATTAAGGTGAGT-TGTCGAGGATCTGCTCCG
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCT-TC-A--ATCTTCTCTA
* * *
8138829 CTACTGCTTAGGGAGA-TAA---GA-TCTGCGAA-CCTGT-TA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTTCTCTA
* * *
8138865 CCCTACTGCTTAGGG-GATTAAGGCGAGTCTTCGATCTGCTCCA
1 -C-TACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* * *
8138908 CTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AA-CTTGT-TA
1 CTACTGCTTAGGGAGATTAAG----GCGAGTCTTCAATCTTCTCTA
* *
8138949 CCCTACTGCTTAGGG-GATTAAGGCGAGTCTTCGATCTGCTCTA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8138992 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* * * *
8139033 CCCTACCGCTTAGGG-GATTAAGGCGAGTCTTCGATCTGCTCCA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8139076 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* * *
8139117 CCCTACTGCTTAGGG-GATTAAGGCGGGTCTTCAATCTGCTCCA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* * * *** * *
8139160 CTACTGCTTAAGGAGA-TAAGATCTACAAATTTAA-CTTGT-TA
1 CTACTGCTTAGGGAGATTAAG-GCGA-GTCTTCAATCTTCTCTA
* * * **
8139201 CCCTACTGCTTAGGG-GATTAAGGCGAGTTGTCGTCGATCTGCTCCG
1 --CTACTGCTTAGGGAGATTAAGGCGA---GTCTTCAATCTTCTCTA
** * *
8139247 CTACTGCTTAGGGAGA-TAA---GA-TCTGGGAACCTGT-TAC-C
1 CTACTGCTTAGGGAGATTAAGGCGAGTCT-TCAATCT-TCT-CTA
* * *
8139285 CTACTGCTTAGGGA-ATTAAGACGAGTCTTCGATCTGCTCTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8139326 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* **
8139367 CCCTACTGCTTAGGG-GATTAAGGCGAGTCGTCGTCAATCTGCTCCG
1 --CTACTGCTTAGGGAGATTAAGGCGAGTC-T--TCAATCTTCTCTA
* * *
8139413 CTACTGCTTAGGGAGA-TAA---GA-TCTACGAACCTGT-TAC-C
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCT-TCT-CTA
* * *
8139451 CTACTGCTTAGGG-GATTAAAGCGAGTCTTCAATCTGCTCCA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8139492 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* ** * *
8139533 CCCTACTGCTTAGGG-GATTAAGGCGAGCCTTTGATATGCTCTA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
*
8139576 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCTGCTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* * *
8139617 CCTTACTGCTTAGGG-GATTAAGGCGAGTCTTCGATCTACTCCA
1 -C-TACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8139660 CTACTGCTTAGGGAGA-TAA---GA-TCTACAAAT-TTAACCTGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT---CT-CTA
* *
8139701 CCCTACTGCTTAGGG-GATTAAGGCGAGTCTTCGATCTGCTCTA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* * * *
8139744 CTACTGCTTAGGGAGA-TAAGATCTGCAGAT-TT-AACCTGCTAC-C
1 CTACTGCTTAGGGAGATTAAG-GC-G-AG-TCTTCAATCTTCT-CTA
* * *
8139787 CTACTGCTTA-GG-GATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
* *
8139827 CTACTGCTTAGGGAGA-TAA---GA-TCTGCAAAT-TTAACCCGTTA
1 CTACTGCTTAGGGAGATTAAGGCGAGTCTTC-AATCTT--CTC--TA
* * *
8139868 CCCTACTGCTTAGGG-GATTAAGGCGAATCTTCGATCTGCTCTA
1 --CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
8139911 CTACTGCTTAGGGAGAT
1 CTACTGCTTAGGGAGAT
8139928 AAGATCTGCA
Statistics
Matches: 965, Mismatches: 174, Indels: 427
0.62 0.11 0.27
Matches are distributed among these distances:
37 60 0.06
38 101 0.10
39 14 0.01
40 45 0.05
41 251 0.26
42 96 0.10
43 227 0.24
44 60 0.06
45 19 0.02
46 40 0.04
47 43 0.04
48 3 0.00
49 4 0.00
50 2 0.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATTAAGGCGAGTCTTCAATCTTCTCTA
Found at i:8139803 original size:751 final size:745
Alignment explanation
Indices: 8138280--8139961 Score: 2712
Period size: 751 Copynumber: 2.2 Consensus size: 745
8138270 ATCATCTTGG
* * * *
8138280 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* * *
8138343 AGATCTTCAAATTTAACCTGTTACCCTAGTGCTTAAGGGATTAAGGCGGATCTTCAATCTGCTCC
63 AGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGATCTTCAATCTGCTCC
*
8138408 ACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCATACTGCTTAGGGGATTAAGG
128 ACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
*
8138473 CGAGTTGTCGACGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACTCTAC
193 CGAGTTGTCGACGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTAC
* *
8138538 TGCATAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
258 TGCATAGGGAATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
* *
8138603 ATTTAACCTGTTACCCTACCGCTTAGGAGATTAAGGCGAGTCTTCAATCTTCTCTACTACTGCTT
323 ATTTAACCTGTTACCCTACCGCTTAGGAGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTT
** * *
8138668 AGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCA
388 AGGGAGATAAGATCT---AATCGAACCTGTTACCCTACTGCTTAGGGGATTAAAGCGAGTCTTCA
*
8138733 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTATTGCTTAGG
450 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGG
* * * *
8138798 GATTAAGGTGAGTTGTCGAGGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAACCTGT
515 GATTAAGGCGAGTTGT---GGATATGCTCCACTACTGCTTAGGGAGATAAGATCTGCGAACCTGC
*
8138863 TACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
577 TACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAG
* *
8138928 ATCTGCAAATTTAACTTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTAC
642 ATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTAC
*
8138993 TACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
707 TACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGCT
*
8139032 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8139097 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACT
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGATCTTCAATCTGCTCCACT
* *
8139162 ACTGCTTAAGGAGATAAGATCTACAAATTTAACTTGTTACCCTACTGCTTAGGGGATTAAGGCGA
131 ACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA
* *
8139227 GTTGTCGTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGGGAACCTGTTACCCTACTGC
196 GTTGTCGACGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTGC
* *
8139292 TTAGGGAATTAAGACGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATT
261 ATAGGGAATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATT
* * *
8139357 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCAATCTGCTCCGCTACTGCTT
326 TAACCTGTTACCCTACCGCTTAGGAGATTAAGGCGAGTC-T--TCAATCTGCTCCACTACTGCTT
8139422 AGGGAGATAAGATCT-A-CGAACCTGTTACCCTACTGCTTAGGGGATTAAAGCGAGTCTTCAATC
388 AGGGAGATAAGATCTAATCGAACCTGTTACCCTACTGCTTAGGGGATTAAAGCGAGTCTTCAATC
8139485 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGA
453 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTA-GGGA
* *
8139550 TTAAGGCGAGCCTT-T-GATATGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCT
517 TTAAGGCGAG--TTGTGGATATGCTCCACTACTGCTTAGGGAGATAAGATCTGC-----GAACCT
*
8139613 GCTACCTTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATA
575 GCTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATA
8139678 AGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCT
640 AGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCT
*
8139743 ACTACTGCTTAGGGAGATAAGATCTGCAGATTTAACCTGCT
705 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGCT
8139784 ACCCTACTGCTTA-GGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* * * *
8139848 TCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAATCTTCGATCTGCTCTACT
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGATCTTCAATCTGCTCCACT
* *
8139913 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTATTACCCTACTGCT
131 ACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCT
8139962 ATGTAACACC
Statistics
Matches: 866, Mismatches: 51, Indels: 27
0.92 0.05 0.03
Matches are distributed among these distances:
747 34 0.04
749 128 0.15
750 15 0.02
751 448 0.52
752 207 0.24
754 34 0.04
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (745 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGATCTTCAATCTGCTCCACT
ACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA
GTTGTCGACGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTGC
ATAGGGAATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATT
TAACCTGTTACCCTACCGCTTAGGAGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTAATCGAACCTGTTACCCTACTGCTTAGGGGATTAAAGCGAGTCTTCAATCTGC
TCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGATTAA
GGCGAGTTGTGGATATGCTCCACTACTGCTTAGGGAGATAAGATCTGCGAACCTGCTACCCTACT
GCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAAA
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTA
GGGAGATAAGATCTGCAAATTTAACCTGCT
Found at i:8140479 original size:16 final size:16
Alignment explanation
Indices: 8140458--8140507 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
8140448 CTTCATAAGT
8140458 ATATATCAATCATTTC
1 ATATATCAATCATTTC
8140474 ATATATCAATCATTTC
1 ATATATCAATCATTTC
*
8140490 ATTGTATCAAT-ATTTC
1 A-TATATCAATCATTTC
8140506 AT
1 AT
8140508 GCTCCATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
15 1 0.03
16 23 0.72
17 8 0.25
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.46
Consensus pattern (16 bp):
ATATATCAATCATTTC
Found at i:8140855 original size:46 final size:46
Alignment explanation
Indices: 8140803--8141203 Score: 608
Period size: 46 Copynumber: 8.7 Consensus size: 46
8140793 TGTCATAGTG
** * ** * *
8140803 TCTTTCAATTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
**
8140849 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
** *** *
8140895 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
**
8140941 TCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
8140987 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
*
8141033 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
8141079 TCTTTCAACCATGGTCTTACACATTTCATATCA-GATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACG-TTGCCATGGTA
8141125 TCTTTCAACCATGGTCTTACACATTTCATATCA-GATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCACG-TTGCCATGGTA
8141171 TCTTTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
8141204 AAGAGCACAC
Statistics
Matches: 336, Mismatches: 18, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 335 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTA
Found at i:8143261 original size:30 final size:30
Alignment explanation
Indices: 8143194--8143261 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
8143184 CACCCTTAAA
* *
8143194 ATATTTGCACTATTAGTCCTTCAAATTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
8143224 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
8143253 AGTATTTAC
1 A-TATTTAC
8143262 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:8144483 original size:1 final size:1
Alignment explanation
Indices: 8144477--8144545 Score: 57
Period size: 1 Copynumber: 69.0 Consensus size: 1
8144467 GGCCTCTCCA
* * * * * * * **
8144477 TTTTTTTTTTTTTTTTCTCTTTTTTATTTTTCTTTTTTTTCTTTTTCTTTTCTTTTTTTCCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8144542 TTTT
1 TTTT
8144546 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.01, C:0.12, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:8144496 original size:23 final size:24
Alignment explanation
Indices: 8144470--8144518 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
8144460 TCACCTTGGC
8144470 CTCTCCATTT-TTTTT-TTTTTTTT
1 CTCT-CATTTATTTTTCTTTTTTTT
**
8144493 CTCTTTTTTATTTTTCTTTTTTTT
1 CTCTCATTTATTTTTCTTTTTTTT
8144517 CT
1 CT
8144519 TTTTCTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 3 0.14
23 9 0.41
24 10 0.45
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (24 bp):
CTCTCATTTATTTTTCTTTTTTTT
Found at i:8144501 original size:15 final size:15
Alignment explanation
Indices: 8144481--8144545 Score: 82
Period size: 14 Copynumber: 4.5 Consensus size: 15
8144471 TCTCCATTTT
8144481 TTTTTTTTTTTTCTC
1 TTTTTTTTTTTTCTC
*
8144496 TTTTTTATTTTTCT-
1 TTTTTTTTTTTTCTC
*
8144510 TTTTTTTCTTTT-TC
1 TTTTTTTTTTTTCTC
*
8144524 TTTTCTTTTTTTC-C
1 TTTTTTTTTTTTCTC
8144538 TTTTTTTT
1 TTTTTTTT
8144546 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
13 1 0.02
14 28 0.67
15 13 0.31
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTTTTCTC
Found at i:8144506 original size:20 final size:19
Alignment explanation
Indices: 8144477--8144545 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 19
8144467 GGCCTCTCCA
8144477 TTTTTTTTTTTTTTTTCTC
1 TTTTTTTTTTTTTTTTCTC
*
8144496 TTTTTTATTTTTCTTTTTTTTC
1 -TTTTT-TTTTT-TTTTTTCTC
8144518 TTTTTCTTTTCTTTTTTTC-C
1 TTTTT-TTTT-TTTTTTTCTC
8144538 TTTTTTTT
1 TTTTTTTT
8144546 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
19 3 0.07
20 11 0.26
21 20 0.47
22 9 0.21
ACGTcount: A:0.01, C:0.12, G:0.00, T:0.87
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTCTC
Found at i:8144515 original size:30 final size:28
Alignment explanation
Indices: 8144479--8144545 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 28
8144469 CCTCTCCATT
*
8144479 TTTTTTTTTTTTTTCTCTTTTTTATTTTTC
1 TTTTTTTTTTTTTTCT-TTTCTT-TTTTTC
*
8144509 TTTTTTTTCTTTTTCTTTTCTTTTTTTC
1 TTTTTTTTTTTTTTCTTTTCTTTTTTTC
*
8144537 CTTTTTTTT
1 TTTTTTTTT
8144546 GAAATAGAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 13 0.39
29 5 0.15
30 15 0.45
ACGTcount: A:0.01, C:0.12, G:0.00, T:0.87
Consensus pattern (28 bp):
TTTTTTTTTTTTTTCTTTTCTTTTTTTC
Found at i:8150202 original size:22 final size:21
Alignment explanation
Indices: 8150172--8150237 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
8150162 TACAAATTAA
8150172 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
8150194 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
8150215 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
8150234 ATCT
1 ATCT
8150238 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:8150224 original size:19 final size:19
Alignment explanation
Indices: 8150189--8150267 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
8150179 AGATTACAAG
8150189 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
8150210 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8150229 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
8150246 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
8150265 ATC
1 ATC
8150268 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:8150231 original size:14 final size:15
Alignment explanation
Indices: 8150211--8150267 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
8150201 AGATTGCATA
8150211 TCATATCTAAGATTG
1 TCATATCTAAGATTG
8150226 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
8150245 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
8150262 -CATATC
1 TCATATC
8150268 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:8150253 original size:36 final size:39
Alignment explanation
Indices: 8150189--8150267 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
8150179 AGATTACAAG
8150189 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
8150229 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
8150265 ATC
1 ATC
8150268 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:8150908 original size:175 final size:174
Alignment explanation
Indices: 8150711--8151214 Score: 672
Period size: 176 Copynumber: 2.8 Consensus size: 174
8150701 TAAACACGTG
* * * * *
8150711 AAAGCCAAATCTGCTGTGTCTTCAATTTGCTCCTTGTGAACATAAGGATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGT-AACACAAGAATGCCAAATCATCTTGGA
* *
8150776 TCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTC-AAAATGGAG
65 TCTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTATGTATCTACTCTTCGTCGAATATGGAG
* *
8150840 ATGCCAGATCTGTTATTTTGGATCTGCTTT-AGTGTGAGAACATCCA
129 ATGCCAGATCTGTTATCTTGGATCTGCTTTGA-TGTGAAAACATCCA
**
8150886 AAAGTCAAATCTGCTATGTCTTCGATTTATTCCTTGTACACACAAGAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTA-ACACAAGAATGCCAAATCATCTTGGA
* * * *
8150951 TCTGATTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTTCGTCGAATATAGAG
65 TCTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTTCGTCGAATATGGAG
* * * ***
8151016 ACGCTAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAATATTTG
129 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCCA
8151062 AAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGT-AACACAAGAATGCCAAATCATCTTGGA
*
8151127 TCTGCTTCAGTAAAAACATCTGAAAGTTAGATCTGCTATGTCTTCGATCTACTCTTCGTCGAATA
65 TCTGCTTCAGT-AAAACATCTGAAGGTTAGATCTGCTATG---T--ATCTACTCTTCGTCGAATA
*
8151192 TGGAGATGCCAAATCTGTT-TCTT
124 TGGAGATGCCAGATCTGTTATCTT
8151215 TGATTTGTTC
Statistics
Matches: 287, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
174 1 0.00
175 103 0.36
176 143 0.50
177 3 0.01
179 1 0.00
180 4 0.01
181 32 0.11
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (174 bp):
AAAGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAACACAAGAATGCCAAATCATCTTGGAT
CTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTTCGTCGAATATGGAGAT
GCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCCA
Found at i:8151294 original size:176 final size:174
Alignment explanation
Indices: 8150760--8151273 Score: 450
Period size: 176 Copynumber: 2.9 Consensus size: 174
8150750 ACATAAGGAT
* * * *
8150760 GCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTACTC
1 GCCAAATCATCTTGGATCTGATTCAGTAAAAACATCTGAAAGTTAGATCTGCTATGTGTCTACTC
* * * * * * * * * * *
8150825 TCCGTC-AAAATGGAGATGCCAGATCTGTTATTTTGGATCTGCTTTAGTGTGAGAACATCCA-AA
66 TTCGTCGAATATAGAGACGCCAAATCTGTTATCTTGGATCTGCTTGA-TCTGAAAATAT-TAGAA
* * * * ** ** * *
8150888 AGTCAAATCTGCTATGTCTTCGATTTATTCCTTGTACACACAAGAAT
129 AGCCAAACCTACTA-GTCTTCGATCTGCTCCCCGTAAACACAAGAAC
* * *
8150935 GCCAAATCATCTTGGATCTGATTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTC
1 GCCAAATCATCTTGGATCTGATTCAGTAAAAACATCTGAAAGTTAGATCTGCTATGTGTCTACTC
* * * *
8151000 TTCGTCGAATATAGAGACGCTAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAATATTTGAAA
66 TTCGTCGAATATAGAGACGCCAAATCTGTTATCTTGGATCTGC-TTGATCTGAAAATATTAGAAA
* * * * ** *
8151065 GTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAAT
130 GCCAAACCTACTA-GTCTTCGATCTGCTCCCCGTAAACACAAGAAC
*
8151111 GCCAAATCATCTTGGATCTGCTTCAGTAAAAACATCTGAAAGTTAGATCTGCTATGTCTTCGATC
1 GCCAAATCATCTTGGATCTGATTCAGTAAAAACATCTGAAAGTTAGATCTGCTATG---T-G-TC
* * * * * *
8151176 TACTCTTCGTCGAATATGGAGATGCCAAATCTGTT-TCTTTGATTTG-TT-CTCTGACAATA-TA
61 TACTCTTCGTCGAATATAGAGACGCCAAATCTGTTATCTTGGATCTGCTTGATCTGAAAATATTA
8151237 GAGACA-CCAAACCTACTA-TCTTCGATCTGCTCCCCGT
126 GA-A-AGCCAAACCTACTAGTCTTCGATCTGCTCCCCGT
8151274 CTAATACAGA
Statistics
Matches: 290, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
175 81 0.28
176 142 0.49
177 21 0.07
178 3 0.01
179 1 0.00
180 10 0.03
181 32 0.11
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (174 bp):
GCCAAATCATCTTGGATCTGATTCAGTAAAAACATCTGAAAGTTAGATCTGCTATGTGTCTACTC
TTCGTCGAATATAGAGACGCCAAATCTGTTATCTTGGATCTGCTTGATCTGAAAATATTAGAAAG
CCAAACCTACTAGTCTTCGATCTGCTCCCCGTAAACACAAGAAC
Found at i:8151519 original size:84 final size:84
Alignment explanation
Indices: 8151346--8153529 Score: 3057
Period size: 84 Copynumber: 26.1 Consensus size: 84
8151336 ATCATCTTGG
* * * * *
8151346 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACCGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* * *
8151409 AAATCTTCAAATTTAACCTGTA
63 AGATCTGCAAATTTAACCTGTT
* * *
8151431 ACCCTAGTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8151496 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8151515 ACCCTACTGCTTAGGGGATTAAGGCGAGTTGTTGACGATTTGCTCCGCTACTACTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAG-TCTT--CGATCTGCTCCACTACTGCTTAGGGAGATA
* *
8151580 AGATTTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
8151597 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8151662 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8151681 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTTCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8151746 TCTGCAAATTTAACATGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8151765 ACCCTACTGCTTAGGGGATTAAGACGGGCCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8151830 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8151849 ACCCTACTGCTTAGGGGATTAAGGCAAGTCATCATCGATCTGCTCCGCTACAGCTTAGAGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
*
8151914 AGATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
8151931 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8151996 TCTTCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8152015 ACCCTACTGCTTAGGGGATTAAGGCGAGTTGTTGACGATTTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAG-TCTT--CGATCTGCTCCACTACTGCTTAGGGAGATA
* *
8152080 AGATTTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* *
8152097 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8152162 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * *
8152181 ACTCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTTCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8152246 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8152265 ACCCTACTGCTTAGGGGATTAAGACGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8152330 TCTGCAAATTTAACTTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8152349 ACCCTACTGCTTAGGGGATTAAGGCAAGTCATCATCGATCTGCTCCGCTACTGCTTAGAGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
* *
8152414 AGATCTGC-----GAACCTATT
63 AGATCTGCAAATTTAACCTGTT
*
8152431 ACCCTACTGCGTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8152496 TCTTCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
8152515 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8152580 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
8152599 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8152664 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
8152683 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
8152748 TCTACAAATTTAACTTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8152767 ACCCTACTGCTTAGGGGATTAAAGCGAGTTGTCGTCGATTTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGA---GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* **
8152832 ATATCTG-----GGAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * *
8152849 ACCCTACTGCTTAGGGAATTAATGG-GAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAT
1 ACCCTACTGCTTAGGGGATTAA-GGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
8152913 ATCTGCAAATTTAACCTGTT
65 ATCTGCAAATTTAACCTGTT
* * *
8152933 ACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTAATTCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
**
8152998 AGATCT----A-CGAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* *
8153015 ACACTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8153080 TCTTCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * *
8153099 ACCCTACTGCTTAGGGTATTAAGGTGAGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
8153164 TCTGTAAATTTAACCTGCT
66 TCTGCAAATTTAACCTGTT
8153183 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
8153248 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
8153267 ACCCTACTGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8153332 TCTGCAAATTTAACCTGCT
66 TCTGCAAATTTAACCTGTT
8153351 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8153416 TCTGCAAATTTAACCCGTT
66 TCTGCAAATTTAACCTGTT
* * *
8153435 ACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
8153500 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
8153519 ACCCTACTGCT
1 ACCCTACTGCT
8153530 ATGTAACACT
Statistics
Matches: 1875, Mismatches: 172, Indels: 105
0.87 0.08 0.05
Matches are distributed among these distances:
79 207 0.11
81 9 0.00
82 234 0.12
83 6 0.00
84 1182 0.63
85 32 0.02
87 205 0.11
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:8152029 original size:334 final size:332
Alignment explanation
Indices: 8151346--8153529 Score: 2969
Period size: 334 Copynumber: 6.5 Consensus size: 332
8151336 ATCATCTTGG
* * * * *
8151346 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACCGCTTA-AG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* * * * * *
8151409 AAATCTTCAAATTTAACCTGTAACCCTAGTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCC
63 AGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCC
8151474 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
128 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
* * * * * *
8151539 CGAGTTGTTGACGATTTGCTCCGCTACTACTTAGGGAGATAAGATTTGC-GAACCTGTTACCCTA
193 CGAG-TCTT--CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCATAACCTGTTACCCTA
* *
8151603 CTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCA
255 CTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
8151668 AATTTAACCTGTT
320 AATTTAACCTGTT
* * * *
8151681 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTTCTCTACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* * * * *
8151746 TCTGCAAATTTAACATGTTACCCTACTGCTTAGGGGATTAAGACGGGCCTTCAATCTGCTCCACT
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
*
8151811 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCAA
131 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA
* * * *
8151876 GTCATCATCGATCTGCTCCGCTACAGCTTAGAGAGATAAGATCTGC-GAACCTGTTACCCTACTG
196 GTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCATAACCTGTTACCCTACTG
*
8151940 CTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAAAT
258 CTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAAT
8152005 TTAACCTGTT
323 TTAACCTGTT
* * *
8152015 ACCCTACTGCTTAGGGGATTAAGGCGAGTTGTTGACGATTTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAG-TCTT--CGATCTGCTCCACTACTGCTTAGGGAGATA
* * * *
8152080 AGATTTGC-----GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCT
63 AGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCC
* *
8152140 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACTCTACCGCTTAGGGGATTAAGG
128 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
* * *
8152205 CGAGTCTTCTATCTTCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCT
193 CGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--A--TAACCTGTTACCCT
* *
8152270 ACTGCTTAGGGGATTAAGACGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
254 ACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
*
8152335 AAATTTAACTTGTT
319 AAATTTAACCTGTT
* * *
8152349 ACCCTACTGCTTAGGGGATTAAGGCAAGTCATCATCGATCTGCTCCGCTACTGCTTAGAGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
* * *
8152414 AGATCTGC-----GAACCTATTACCCTACTGCGTAGGGGATTAAGGCGAGTCTTCGATCTGCTCC
63 AGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCC
*
8152474 ACTACTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
128 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
* *
8152539 CGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCT
193 CGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--A--TAACCTGTTACCCT
*
8152604 ACCGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
254 ACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
8152669 AAATTTAACCTGTT
319 AAATTTAACCTGTT
* *
8152683 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* * * * *
8152748 TCTACAAATTTAACTTGTTACCCTACTGCTTAGGGGATTAAAGCGAGTTGTCGTCGATTTGCTCC
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA---GTCTTCGATCTGCTCC
* * ** *
8152813 GCTACTGCTTAGGGAGATAATATCTG-----GGAACCTGTTACCCTACTGCTTAGGGAATTAATG
128 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAA-G
* *
8152873 G-GAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAATATCTGCAAATTTAACCTGTTACCC
192 GCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--A--TAACCTGTTACCC
* * * *
8152937 TACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTAATTCTTAGGGAGATAAGAT
253 TACTGCTTAGGGGATTAAGGCGAGTC-T--TCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
**
8153002 CT----A-CGAACCTGTT
315 CTGCAAATTTAACCTGTT
* *
8153015 ACACTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* * * * *
8153080 TCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGTATTAAGGTGAGTCTTTGATCTGCTCTACT
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
* *
8153145 ACTGCTTAGGGAGATAAGATCTGTAAATTTAACCTGCTACCCTACTGCTTAGGGGATTAAGGCGA
131 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA
8153210 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
196 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--A--TAACCTGTTACCCTACT
* * * *
8153275 GCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAATATCTGCAAA
257 GCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
*
8153340 TTTAACCTGCT
322 TTTAACCTGTT
8153351 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* * *
8153416 TCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCTACT
66 TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
* *
8153481 ACTACTTAGGGAGATAAGATCTGCAAATTTAACCTATTACCCTACTGCT
131 ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCT
8153530 ATGTAACACT
Statistics
Matches: 1665, Mismatches: 145, Indels: 77
0.88 0.08 0.04
Matches are distributed among these distances:
329 69 0.04
331 68 0.04
332 244 0.15
333 8 0.00
334 937 0.56
335 30 0.02
336 207 0.12
337 65 0.04
339 37 0.02
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (332 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACT
ACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCATAACCTGTTACCCTACTGCTT
AGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTA
ACCTGTT
Found at i:8152364 original size:500 final size:497
Alignment explanation
Indices: 8151346--8153529 Score: 3044
Period size: 500 Copynumber: 4.4 Consensus size: 497
8151336 ATCATCTTGG
* * *
8151346 ACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCT-TCGATCTGCTCCGCTACCGCTTA-AG-GAT
1 ACCCTACTGCTTAGGGGATTAA-G-GCA-AGTCTCTCGATCTGCTCCGCTACTGCTTAGAGAGAT
* * * * * *
8151408 AAAATCTTCAAATTTAACCTGTAACCCTAGTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTC
63 AAGATCTGC--A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTC
*
8151473 CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAG
124 CACTACTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAG
* * * *
8151538 GCGAGTTGTTGACGATTTGCTCCGCTACTACTTAGGGAGATAAGATTTGC-GAACCTGTTACCCT
189 GCGAG-TCTT--CGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAGAACCTGTTACCCT
8151602 ACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGC
251 ACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGC
* *
8151667 AAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTTCTCTACTACTGC
316 AAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTGCTCCACTACTGC
* *
8151732 TTAGGGAGATAAGATCTGCAAATTTAACATGTTACCCTACTGCTTAGGGGATTAAGACGGGCCTT
381 TTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGGGTCTT
8151797 CAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
446 CAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
*
8151849 ACCCTACTGCTTAGGGGATTAAGGCAAGTCATCATCGATCTGCTCCGCTACAGCTTAGAGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCAAGTC-TC-TCGATCTGCTCCGCTACTGCTTAGAGAGATA
* *
8151914 AGATCTGC-GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTA
64 AGATCTGCATAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTA
8151978 CTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAG
129 CTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAG
* * *
8152043 TTGTTGACGATTTGCTCCGCTACTGCTTAGGGAGATAAGATTTGC-GAACCTGTTACCCTACTGC
194 -TCTT--CGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAGAACCTGTTACCCTACTGC
*
8152107 TTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATT
256 TTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATT
* * *
8152172 TAACCTGTTACTCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTTCTCTACTACTGCTTAGG
321 TAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTGCTCCACTACTGCTTAGG
8152237 GAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGGGTCTTCAATC
386 GAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGGGTCTTCAATC
*
8152302 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACTTGTT
451 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
8152349 ACCCTACTGCTTAGGGGATTAAGGCAAGTCATCATCGATCTGCTCCGCTACTGCTTAGAGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCAAGTC-TC-TCGATCTGCTCCGCTACTGCTTAGAGAGATA
* * *
8152414 AGATCTGC-GAACCTATTACCCTACTGCGTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTA
64 AGATCTGCATAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTA
8152478 CTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAG
129 CTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAG
* * * * *
8152543 TCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACCG
194 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGC--A--GAACCTGTTACCCTACTG
* *
8152608 CTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAAT
255 CTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAAT
* * *
8152673 TTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCAATCTGCTCCACTACTGCTTAG
320 TTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTGCTCCACTACTGCTTAG
* * *
8152738 GGAGATAAGATCTACAAATTTAACTTGTTACCCTACTGCTTAGGGGATTAA-AGCGAGTTGTCGT
385 GGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGA-CG-G--GTCTT
* * * * **
8152802 CGATTTGCTCCGCTACTGCTTAGGGAGATAATATCTG-----GGAACCTGTT
446 CAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* * ** *
8152849 ACCCTACTGCTTAGGGAATTAATGG-GAGTCT-TCGATCTGCTCTACTACTGCTTAGGGAGATAA
1 ACCCTACTGCTTAGGGGATTAA-GGCAAGTCTCTCGATCTGCTCCGCTACTGCTTAGAGAGATAA
*
8152912 TATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
65 GATCTGC--A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCT
* * * ** *
8152977 CCGCTAATTCTTAGGGAGATAAGATC-T---A-CGAACCTGTTACACTACTGCTTAGGGGATTAA
123 CCACTACTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAA
* *
8153037 GGCGAGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTT-CAAATTTAACCTGTTAC
188 GGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TTGC--A--GAACCTGTTAC
* * *
8153101 CCTACTGCTTAGGGTATTAAGGTGAGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATC
248 CCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATC
* * * *
8153166 TGTAAATTTAACCTGCTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTAC
313 TGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTGCTCCACTAC
** *
8153231 TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGT
378 TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGGGT
* * * *
8153296 CTTCGATCTGCTCTACTACTGCTTAGGGAGATAATATCTGCAAATTTAACCTGCT
443 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* * *
8153351 ACCCTACTGCTTAGGGGATTAAGGCGAGTCT-TCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCAAGTCTCTCGATCTGCTCCGCTACTGCTTAGAGAGATAAG
* * *
8153415 ATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCTAC
66 ATCTGC--A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCAC
* * *
8153480 TACTACTTAGGGAGATAAGATCTGCAAATTTAACCTATTACCCTACTGCT
127 TACTGCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCT
8153530 ATGTAACACT
Statistics
Matches: 1544, Mismatches: 101, Indels: 71
0.90 0.06 0.04
Matches are distributed among these distances:
497 106 0.07
499 36 0.02
500 906 0.59
501 12 0.01
502 338 0.22
503 46 0.03
504 20 0.01
505 80 0.05
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (497 bp):
ACCCTACTGCTTAGGGGATTAAGGCAAGTCTCTCGATCTGCTCCGCTACTGCTTAGAGAGATAAG
ATCTGCATAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTTCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAGAACCTGTTACCCTACTGCTTAGG
GGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACC
TGTTACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCTATCTGCTCCACTACTGCTTAGGGAGAT
AAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGGGTCTTCAATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
Found at i:8154066 original size:17 final size:17
Alignment explanation
Indices: 8154028--8154076 Score: 84
Period size: 16 Copynumber: 3.0 Consensus size: 17
8154018 TTCATAAGTA
8154028 TATATCAATCATTTCA-
1 TATATCAATCATTTCAT
8154044 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
8154061 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
8154077 GCTCCATCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 23 0.72
17 9 0.28
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:8154089 original size:31 final size:33
Alignment explanation
Indices: 8154028--8154089 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 33
8154018 TTCATAAGTA
*
8154028 TATATCAATCATTTCATATATCAATCATTTCAT
1 TATATCAATCATTTCATAGATCAATCATTTCAT
* *
8154061 TATATCAAT-ATTTCAT-GCTCCATCATTTC
1 TATATCAATCATTTCATAGATCAATCATTTC
8154090 CATATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 10 0.38
32 7 0.27
33 9 0.35
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (33 bp):
TATATCAATCATTTCATAGATCAATCATTTCAT
Found at i:8154096 original size:31 final size:32
Alignment explanation
Indices: 8154027--8154096 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
8154017 CTTCATAAGT
*
8154027 ATATATCAATCATTTCATATATCAATCATTTC
1 ATATATCAATCATTTCATAGATCAATCATTTC
* *
8154059 ATTATATCAAT-ATTTCAT-GCTCCATCATTTCC
1 A-TATATCAATCATTTCATAGATCAATCATTT-C
8154091 ATATAT
1 ATATAT
8154097 TTTATGTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
31 14 0.42
32 10 0.30
33 9 0.27
ACGTcount: A:0.34, C:0.20, G:0.01, T:0.44
Consensus pattern (32 bp):
ATATATCAATCATTTCATAGATCAATCATTTC
Found at i:8154422 original size:46 final size:46
Alignment explanation
Indices: 8154362--8154773 Score: 585
Period size: 46 Copynumber: 9.0 Consensus size: 46
8154352 TTTGACATGA
* * * * *
8154362 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* *
8154408 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * *** *
8154454 TGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * *
8154500 TGCCATGGTATTTTTCAACCATGGTCTTATTCGTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
8154546 TGCGATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
8154592 TGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATATCAGGT
*
8154638 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
8154684 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
8154730 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
8154774 AGAGCACACT
Statistics
Matches: 335, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
45 4 0.01
46 331 0.99
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:8158245 original size:26 final size:25
Alignment explanation
Indices: 8158211--8158259 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
8158201 TGATTAAACT
8158211 TAATCACTTTAATATTAATATTAAGA
1 TAATCACTTTAATATTAA-ATTAAGA
8158237 TAATCACTTTAATATTAAATTAA
1 TAATCACTTTAATATTAAATTAA
8158260 TAAAATACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (25 bp):
TAATCACTTTAATATTAAATTAAGA
Found at i:8161058 original size:21 final size:20
Alignment explanation
Indices: 8160997--8161059 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
8160987 TTTTCTCTTG
*
8160997 GGGCAACTTCTTGGTGAGTT
1 GGGCAACTTCTTAGTGAGTT
* * * *
8161017 GAGGCAGCTTGTTAATAAGTT
1 G-GGCAACTTCTTAGTGAGTT
8161038 GGGACAACTTCTTAGTGAGTT
1 GGG-CAACTTCTTAGTGAGTT
8161059 G
1 G
8161060 AAGTAGCTTC
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.33
Consensus pattern (20 bp):
GGGCAACTTCTTAGTGAGTT
Found at i:8161080 original size:42 final size:42
Alignment explanation
Indices: 8160994--8161087 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
8160984 AGCTTTTCTC
* * *
8160994 TTGGGGCAACTTCTTGGTGAGTTGAGGCAGCTTGTTAATAAG
1 TTGGGGCAACTTCTTAGTGAGTTGAAGCAGCTTCTTAATAAG
* * *
8161036 TTGGGACAACTTCTTAGTGAGTTGAAGTAGCTTCTTGAA-GAG
1 TTGGGGCAACTTCTTAGTGAGTTGAAGCAGCTTCTT-AATAAG
8161078 TTGGGGCAAC
1 TTGGGGCAAC
8161088 CATTTGGTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (42 bp):
TTGGGGCAACTTCTTAGTGAGTTGAAGCAGCTTCTTAATAAG
Found at i:8166142 original size:26 final size:26
Alignment explanation
Indices: 8166106--8166241 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
8166096 CATGATATTC
8166106 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8166132 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8166158 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8166184 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8166210 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
8166236 TTATCA
1 TTATCA
8166242 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8167769 original size:44 final size:44
Alignment explanation
Indices: 8167716--8167912 Score: 166
Period size: 44 Copynumber: 4.7 Consensus size: 44
8167706 AAAAAAATAA
8167716 TTTAATACAAACAAATTCATTTTTGTCATGCACATGCCATACAC
1 TTTAATACAAACAAATTCATTTTTGTCATGCACATGCCATACAC
* * *
8167760 TTTAATACAAAGAAATCCA---TT-TC-TGC-CATG-TATA-A-
1 TTTAATACAAACAAATTCATTTTTGTCATGCACATGCCATACAC
* * *
8167795 --TAA-CCAAACAAATTCGTTTATGTCATGCACATGCCATACAC
1 TTTAATACAAACAAATTCATTTTTGTCATGCACATGCCATACAC
* * * * * * * *
8167836 TTTAATACAAAGAAATCCATTTATGTCATGTACAATAACCAAATAA
1 TTTAATACAAACAAATTCATTTTTGTCATGCAC-AT-GCCATACAC
8167882 TTTAATACAAACAAATTCATTTTTGTCATGC
1 TTTAATACAAACAAATTCATTTTTGTCATGC
8167913 GCATAGTAGA
Statistics
Matches: 117, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
32 9 0.08
33 3 0.03
35 1 0.01
36 3 0.03
37 6 0.05
38 8 0.07
39 6 0.05
40 3 0.03
41 2 0.02
43 3 0.03
44 39 0.33
45 2 0.02
46 32 0.27
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.33
Consensus pattern (44 bp):
TTTAATACAAACAAATTCATTTTTGTCATGCACATGCCATACAC
Found at i:8167805 original size:76 final size:76
Alignment explanation
Indices: 8167723--8167878 Score: 267
Period size: 76 Copynumber: 2.1 Consensus size: 76
8167713 TAATTTAATA
* *
8167723 CAAACAAATTCATTTTTGTCATGCACATGCCATACACTTTAATACAAAGAAATCCATTTCTGCCA
1 CAAACAAATTCATTTATGTCATGCACATGCCATACACTTTAATACAAAGAAATCCATTTATGCCA
*
8167788 TGTATAATAAC
66 TGTACAATAAC
* *
8167799 CAAACAAATTCGTTTATGTCATGCACATGCCATACACTTTAATACAAAGAAATCCATTTATGTCA
1 CAAACAAATTCATTTATGTCATGCACATGCCATACACTTTAATACAAAGAAATCCATTTATGCCA
8167864 TGTACAATAAC
66 TGTACAATAAC
8167875 CAAA
1 CAAA
8167879 TAATTTAATA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (76 bp):
CAAACAAATTCATTTATGTCATGCACATGCCATACACTTTAATACAAAGAAATCCATTTATGCCA
TGTACAATAAC
Found at i:8167903 original size:46 final size:44
Alignment explanation
Indices: 8167799--8167917 Score: 130
Period size: 46 Copynumber: 2.7 Consensus size: 44
8167789 GTATAATAAC
* * * *
8167799 CAAACAAATTCGTTTATGTCATGCACATGCCATACACTTTAATA
1 CAAACAAATTCATTTATGTCATGCACATACCAAACAATTTAATA
* * * *
8167843 CAAAGAAATCCATTTATGTCATGTACAATAACCAAATAATTTAATA
1 CAAACAAATTCATTTATGTCATGCAC-AT-ACCAAACAATTTAATA
* *
8167889 CAAACAAATTCATTTTTGTCATGCGCATA
1 CAAACAAATTCATTTATGTCATGCACATA
8167918 GTAGACAATA
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
44 23 0.38
45 4 0.07
46 33 0.55
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (44 bp):
CAAACAAATTCATTTATGTCATGCACATACCAAACAATTTAATA
Found at i:8168059 original size:11 final size:11
Alignment explanation
Indices: 8168025--8168059 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8168015 AACTGATTTT
*
8168025 TCATATTTGAT
1 TCATATTTGAA
*
8168036 TCATATTTAAA
1 TCATATTTGAA
8168047 TCATATTTGAA
1 TCATATTTGAA
8168058 TC
1 TC
8168060 CAAAGAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (11 bp):
TCATATTTGAA
Found at i:8168867 original size:32 final size:33
Alignment explanation
Indices: 8168831--8168895 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
8168821 TATTTTATTC
**
8168831 TCCTTAATCCCAATTGATCCTTTC-TTTCTTTT
1 TCCTTAATCCCAATCCATCCTTTCTTTTCTTTT
*
8168863 TCCTTAATCCCAATCCATCTTTTCTTTTCTTTT
1 TCCTTAATCCCAATCCATCCTTTCTTTTCTTTT
8168896 CCCAAAACCC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 21 0.72
33 8 0.28
ACGTcount: A:0.15, C:0.29, G:0.02, T:0.54
Consensus pattern (33 bp):
TCCTTAATCCCAATCCATCCTTTCTTTTCTTTT
Found at i:8169585 original size:20 final size:20
Alignment explanation
Indices: 8169548--8169604 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 20
8169538 AATTTAATTC
*
8169548 AAATATATAAACTCTATTTT
1 AAATATATAAACTATATTTT
*
8169568 AAATAT-TAAACTA-ATATT
1 AAATATATAAACTATATTTT
* * *
8169586 ATATATTTAAAATATATTT
1 AAATATATAAACTATATTT
8169605 CAATAGGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.30
19 12 0.40
20 9 0.30
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATATATAAACTATATTTT
Found at i:8175886 original size:60 final size:61
Alignment explanation
Indices: 8175768--8175944 Score: 146
Period size: 60 Copynumber: 2.9 Consensus size: 61
8175758 TTCTTTAAAC
* * * ** *
8175768 TTTTAGAATTAGAAATAAATTGATAAATTTTGTAAATGTTAAGGGTTAAATTTATTGAATT
1 TTTTAGAATTAGAAATAAATAGACAAATATTGTAAACATTAAGGGCTAAATTTATTGAATT
* * *
8175829 TTTTAGAATTA-AAACTAAA-AGACAAATATTGTAAACATTGAGGGCTAGATTTGTTGAA-T
1 TTTTAGAATTAGAAA-TAAATAGACAAATATTGTAAACATTAAGGGCTAAATTTATTGAATT
* * * * * * **
8175888 TTTTAGATTTAGGATTAAATTGATAAA-ATGTGTAAATATTAGAAAGCTAAATTTATT
1 TTTTAGAATTAGAAATAAATAGACAAATAT-TGTAAACATTA-AGGGCTAAATTTATT
8175945 ATTATGCAAA
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
59 17 0.19
60 48 0.53
61 26 0.29
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (61 bp):
TTTTAGAATTAGAAATAAATAGACAAATATTGTAAACATTAAGGGCTAAATTTATTGAATT
Found at i:8184284 original size:26 final size:25
Alignment explanation
Indices: 8184252--8184304 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
8184242 AATATGATTT
*
8184252 AATAAATTGTATATTTATTGTATAAA
1 AATAAATTGTATATTTATT-CATAAA
*
8184278 AATAAATTTTATATTTATTCATAAA
1 AATAAATTGTATATTTATTCATAAA
8184303 AA
1 AA
8184305 ATATTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (25 bp):
AATAAATTGTATATTTATTCATAAA
Found at i:8184914 original size:22 final size:22
Alignment explanation
Indices: 8184889--8184932 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8184879 TCTTCTGTTG
8184889 GATGCACGG-GTTTATCGTGTGT
1 GATGCA-GGAGTTTATCGTGTGT
* *
8184911 GATGTAGGAGTTTATTGTGTGT
1 GATGCAGGAGTTTATCGTGTGT
8184933 ATAAAATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.16, C:0.07, G:0.36, T:0.41
Consensus pattern (22 bp):
GATGCAGGAGTTTATCGTGTGT
Found at i:8190653 original size:44 final size:44
Alignment explanation
Indices: 8190577--8190663 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
8190567 TTTACTACCA
* * * * *
8190577 ATGGCTCTGGGCACACAACAAAACGCTACAGATGGAATTTGCAT
1 ATGGCTATGGGCACACAAAAAAACACTACAGATGAAATCTGCAT
* * *
8190621 ATGGCTATGGGTACACAAAAAAATACTGCAGATGAAATCTGCA
1 ATGGCTATGGGCACACAAAAAAACACTACAGATGAAATCTGCA
8190664 AGTGGCCATG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (44 bp):
ATGGCTATGGGCACACAAAAAAACACTACAGATGAAATCTGCAT
Found at i:8193191 original size:24 final size:25
Alignment explanation
Indices: 8193147--8193194 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
8193137 CGTTTTGAGC
8193147 ACTTTTTTTGTTTTATGTTCTTTAA
1 ACTTTTTTTGTTTTATGTTCTTTAA
*
8193172 ACTTTCTTTT-TTTT-TTTTCTTTA
1 ACTTT-TTTTGTTTTATGTTCTTTA
8193195 TTTTCCATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 9 0.43
26 4 0.19
ACGTcount: A:0.12, C:0.10, G:0.04, T:0.73
Consensus pattern (25 bp):
ACTTTTTTTGTTTTATGTTCTTTAA
Found at i:8194132 original size:20 final size:22
Alignment explanation
Indices: 8194085--8194132 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 22
8194075 AACATTCAAA
8194085 TATAAATAACTAAAATATAACC
1 TATAAATAACTAAAATATAACC
8194107 TA-AAATAAAC-AAAA-ATAA-C
1 TATAAAT-AACTAAAATATAACC
8194126 TATAAAT
1 TATAAAT
8194133 TTAGTTTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 3 0.12
20 8 0.33
21 8 0.33
22 5 0.21
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (22 bp):
TATAAATAACTAAAATATAACC
Found at i:8200109 original size:26 final size:26
Alignment explanation
Indices: 8200073--8200182 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
8200063 TGATACAAAT
*
8200073 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8200099 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
8200125 TGATAATGGGTTTGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
8200151 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8200177 TGATAA
1 TGATAA
8200183 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:8203360 original size:137 final size:137
Alignment explanation
Indices: 8203114--8203400 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
8203104 CATTGGGCCT
** *
8203114 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTTAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
8203179 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
8203244 CATATGC
131 CATATGC
*
8203251 AAGCCCATTTGGGTAACAGTGGTGCTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
8203316 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
8203381 CATATGC
131 CATATGC
8203388 AAGCCCATTTGGG
1 AAGCCCATTTGGG
8203401 GAGACTACTC
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCAATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:8203676 original size:26 final size:26
Alignment explanation
Indices: 8203647--8203699 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8203637 TCAAACATGC
8203647 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
8203673 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
8203699 A
1 A
8203700 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:8205214 original size:25 final size:25
Alignment explanation
Indices: 8205179--8205328 Score: 204
Period size: 25 Copynumber: 6.2 Consensus size: 25
8205169 ATGAAATTCC
8205179 ATCATGAACATTTACCTAA-CCATT
1 ATCATGAACATTTACCTAACCCATT
8205203 ATCATGGAACATTTACCTAACCCATT
1 ATCAT-GAACATTTACCTAACCCATT
*
8205229 ATCATGGAATATTTACCTAA-CCATT
1 ATCAT-GAACATTTACCTAACCCATT
8205254 ATCATGAACATTTACCTAACCCATT
1 ATCATGAACATTTACCTAACCCATT
* *
8205279 ATCAGGAA-ATTTACCTAATCCATT
1 ATCATGAACATTTACCTAACCCATT
*
8205303 AT--T-ATCATTTACCTAACCCATT
1 ATCATGAACATTTACCTAACCCATT
8205325 ATCA
1 ATCA
8205329 ATTTGTACCA
Statistics
Matches: 113, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.01
22 17 0.15
24 35 0.31
25 36 0.32
26 24 0.21
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCATGAACATTTACCTAACCCATT
Found at i:8210453 original size:26 final size:26
Alignment explanation
Indices: 8210424--8210476 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8210414 TCAAACATGC
8210424 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
8210450 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
8210476 A
1 A
8210477 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:8211991 original size:26 final size:26
Alignment explanation
Indices: 8211960--8212119 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
8211950 TGAAATGTCC
* *
8211960 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAATATTTACCTAACCCATT
*
8211986 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
*
8212012 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAACCCATT
*
8212038 ATCATAGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
* *
8212064 ATCACGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAACCCATT
8212090 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
8212116 ATCA
1 ATCA
8212120 ATTTGTACCA
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 124 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAACCCATT
Done.