Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 326 of 410
Found at i:101243452 original size:13 final size:13
Alignment explanation
Indices: 101243434--101243460 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101243424 GCTTGGCAGG
101243434 GACACGCCCGTGT
1 GACACGCCCGTGT
101243447 GACACGCCCGTGT
1 GACACGCCCGTGT
101243460 G
1 G
101243461 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:101254802 original size:122 final size:122
Alignment explanation
Indices: 101254585--101254817 Score: 466
Period size: 122 Copynumber: 1.9 Consensus size: 122
101254575 CTAAGTTTAG
101254585 TAAAAGTGAATTTTGGCTTTGGGAAGTTGGATTTTTAGGTCACATTGTTTCAGGTGATGGTATAC
1 TAAAAGTGAATTTTGGCTTTGGGAAGTTGGATTTTTAGGTCACATTGTTTCAGGTGATGGTATAC
101254650 GGGTTGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCTGTATAAAGTT
66 GGGTTGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCTGTATAAAGTT
101254707 TAAAAGTGAATTTTGGCTTTGGGAAGTTGGATTTTTAGGTCACATTGTTTCAGGTGATGGTATAC
1 TAAAAGTGAATTTTGGCTTTGGGAAGTTGGATTTTTAGGTCACATTGTTTCAGGTGATGGTATAC
101254772 GGGTTGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACC
66 GGGTTGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACC
101254818 GAAAAATGTA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 111 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (122 bp):
TAAAAGTGAATTTTGGCTTTGGGAAGTTGGATTTTTAGGTCACATTGTTTCAGGTGATGGTATAC
GGGTTGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCTGTATAAAGTT
Found at i:101260454 original size:16 final size:16
Alignment explanation
Indices: 101260435--101260466 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101260425 TATCGTTCAA
101260435 AATCACATAATAAAAT
1 AATCACATAATAAAAT
*
101260451 AATCATATAATAAAAT
1 AATCACATAATAAAAT
101260467 TAAAGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (16 bp):
AATCACATAATAAAAT
Found at i:101273171 original size:20 final size:20
Alignment explanation
Indices: 101273146--101273185 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
101273136 AACAACAAGA
101273146 AATAATCAAGAATTGAACTT
1 AATAATCAAGAATTGAACTT
101273166 AATAATCAAGAATTGAACTT
1 AATAATCAAGAATTGAACTT
101273186 GTAGCAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
AATAATCAAGAATTGAACTT
Found at i:101277236 original size:76 final size:76
Alignment explanation
Indices: 101277105--101277380 Score: 322
Period size: 76 Copynumber: 3.6 Consensus size: 76
101277095 TTAGTTGGCG
* * * * *
101277105 CAACTCATTGTT-GCACATCCAACTAGTACTAGGCACACATTTGATATCGTTGGTTTACCTGACT
1 CAACTCATTGTTGGTACATCCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTACCCGACT
*
101277169 AGCATTGGGCA
66 AGCACTGGGCA
* * * *
101277180 CAACTTATTGTTGGTACATCCAACTAGCGTTGGGCACACATTTGATATAGTCGGTTTACCCGACT
1 CAACTCATTGTTGGTACATCCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTACCCGACT
**
101277245 AGCACTGGGTG
66 AGCACTGGGCA
* * *
101277256 CAACTCATTGTTGATATATCCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTACCCAACT
1 CAACTCATTGTTGGTACATCCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTACCCGACT
** *
101277321 AGCACTTTGCT
66 AGCACTGGGCA
* ** * *
101277332 CAACTCATT-TTCGCTATTTCCAACTAGTGCTGGGTAGACATTTGATATC
1 CAACTCATTGTT-GGTACATCCAACTAGTGCTGGGCACACATTTGATATC
101277381 ATCAGTGTAT
Statistics
Matches: 172, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
75 13 0.08
76 159 0.92
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (76 bp):
CAACTCATTGTTGGTACATCCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTACCCGACT
AGCACTGGGCA
Found at i:101277319 original size:40 final size:39
Alignment explanation
Indices: 101277123--101277326 Score: 132
Period size: 40 Copynumber: 5.3 Consensus size: 39
101277113 TGTTGCACAT
* *
101277123 CCAACTAGTACTAGGCACACATTTGATATCGTTGGTTTAC
1 CCAACTAGCACTGGGCACACATTTGATAT-GTTGGTTTAC
** * * ** *
101277163 CTGACTAGCATTGGGCACA-ACTT-AT-TGTTGGTACAT
1 CCAACTAGCACTGGGCACACATTTGATATGTTGGTTTAC
** *
101277199 CCAACTAGCGTTGGGCACACATTTGATATAGTCGGTTTAC
1 CCAACTAGCACTGGGCACACATTTGATAT-GTTGGTTTAC
* ** * * * * *
101277239 CCGACTAGCACTGGGTGCA-A-CTCAT-TGTTGATATAT
1 CCAACTAGCACTGGGCACACATTTGATATGTTGGTTTAC
** *
101277275 CCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTAC
1 CCAACTAGCACTGGGCACACATTTGATAT-GTTGGTTTAC
101277315 CCAACTAGCACT
1 CCAACTAGCACT
101277327 TTGCTCAACT
Statistics
Matches: 115, Mismatches: 41, Indels: 16
0.67 0.24 0.09
Matches are distributed among these distances:
36 43 0.37
37 6 0.05
38 10 0.09
39 6 0.05
40 50 0.43
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (39 bp):
CCAACTAGCACTGGGCACACATTTGATATGTTGGTTTAC
Found at i:101277417 original size:152 final size:152
Alignment explanation
Indices: 101277121--101277418 Score: 323
Period size: 152 Copynumber: 2.0 Consensus size: 152
101277111 ATTGTTGCAC
* ** *
101277121 ATCCAACTAGTACTAGGCACACATTTGATATCGTTGGTTTACCTGACTAGCATTGGGCACAACTT
1 ATCCAACTAGTACTAGGCACACATTTGATATCGTCGGTTTACCCAACTAGCATTGGGCACAACTC
* * * *
101277186 ATTGTTGGTACATCCAACTAGCGTTGGGCACACATTTGATATAGTCGGTTTACCCGACTAGCACT
66 ATTGTTGCTACATCCAACTAGCGCTGGGCACACATTTGATATAGTCAGTGTACCCGACTAGCACT
** **
101277251 GGGTGCAACTCATTGTTGATAT
131 GGGAACAAAACATTGTTGATAT
* * * *
101277273 ATCCAACTAGTGCTGGGCACACATTTGATATCGTCGGTTTACCCAACTAGCACTT-TGCTCAACT
1 ATCCAACTAGTACTAGGCACACATTTGATATCGTCGGTTTACCCAACTAGCA-TTGGGCACAACT
** * * * ** *
101277337 CATT-TTCGCTATTTCCAACTAGTGCTGGGTAGACATTTGATATCA-TCAGTGTATTCGACTTGC
65 CATTGTT-GCTACATCCAACTAGCGCTGGGCACACATTTGATAT-AGTCAGTGTACCCGACTAGC
*
101277400 ATTGGGAACAAAACATTGT
128 ACTGGGAACAAAACATTGT
101277419 CAGTTTATTT
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
151 2 0.02
152 113 0.96
153 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (152 bp):
ATCCAACTAGTACTAGGCACACATTTGATATCGTCGGTTTACCCAACTAGCATTGGGCACAACTC
ATTGTTGCTACATCCAACTAGCGCTGGGCACACATTTGATATAGTCAGTGTACCCGACTAGCACT
GGGAACAAAACATTGTTGATAT
Found at i:101278568 original size:2 final size:2
Alignment explanation
Indices: 101278561--101278590 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
101278551 TGTCTAGCTG
101278561 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101278591 GTTTGATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101279661 original size:45 final size:45
Alignment explanation
Indices: 101279577--101279689 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
101279567 CGGCATTTCA
* *
101279577 CCTGTTAGGCTCG-AGGCCCG-ATATCAGTTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGACATTATAG
101279620 CCTGCTAGGCTCGAAGGCCCGAATAGT-A-TCTCACCGACATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATA-TCAGT-TCACCGACATTATAG
** * *
101279665 TTTGCTAAGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCGAAGGCCCGAATA
101279690 ATCAAGTCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
43 12 0.20
44 8 0.13
45 39 0.65
46 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (45 bp):
CCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGACATTATAG
Found at i:101280071 original size:43 final size:43
Alignment explanation
Indices: 101280010--101280173 Score: 292
Period size: 43 Copynumber: 3.8 Consensus size: 43
101280000 ATCATTTCAT
* *
101280010 CGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
*
101280053 CGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
101280096 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
*
101280139 CAGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
101280174 TAATACCAGC
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (43 bp):
CGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
Found at i:101280217 original size:86 final size:86
Alignment explanation
Indices: 101280019--101280193 Score: 291
Period size: 86 Copynumber: 2.1 Consensus size: 86
101280009 TCGGCATTAC
*
101280019 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCG
*
101280084 AATACACATCACCGGCACTAA
66 AATACACATCACCAGCACTAA
*
101280105 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACTAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCG
* *
101280170 AATATA-AT-ACCAGCACTAG
66 AATACACATCACCAGCACTAA
101280189 GCCTG
1 GCCTG
101280194 TGGGATTTAT
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
84 14 0.17
85 2 0.02
86 68 0.81
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (86 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCG
AATACACATCACCAGCACTAA
Found at i:101281275 original size:23 final size:23
Alignment explanation
Indices: 101281221--101281409 Score: 315
Period size: 23 Copynumber: 8.1 Consensus size: 23
101281211 CCTAGCCTCT
*
101281221 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
101281244 TTTTAATAACTGGGGCATGAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
101281268 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101281291 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
101281314 TTTTGATAACTGGGGCATAAGCCT
1 -TTTAATAACTGGGGCATAAGCCC
*
101281338 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101281361 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101281384 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101281407 TTT
1 TTT
101281410 TACACTTCCT
Statistics
Matches: 157, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
23 115 0.73
24 42 0.27
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101281315 original size:70 final size:70
Alignment explanation
Indices: 101281221--101281409 Score: 326
Period size: 70 Copynumber: 2.7 Consensus size: 70
101281211 CCTAGCCTCT
* *
101281221 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
101281286 AGCCC
66 AGCCC
* * *
101281291 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTGATAACTGGGGCATA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
101281356 AGCCC
66 AGCCC
101281361 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
101281410 TACACTTCCT
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 24 0.21
70 88 0.79
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (70 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCC
Found at i:101282810 original size:27 final size:27
Alignment explanation
Indices: 101282780--101283040 Score: 307
Period size: 27 Copynumber: 9.7 Consensus size: 27
101282770 AAGGTATTTT
*
101282780 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
101282807 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
101282834 A-TAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
101282860 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
101282887 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
101282914 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
101282941 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
101282968 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
101282995 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
101283022 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
101283041 AGTACTTTGG
Statistics
Matches: 203, Mismatches: 24, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.12
27 176 0.87
28 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:101282965 original size:81 final size:80
Alignment explanation
Indices: 101282781--101283040 Score: 355
Period size: 81 Copynumber: 3.2 Consensus size: 80
101282771 AGGTATTTTA
* * *
101282781 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAACATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACATAATTCTGTA
101282845 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAATG
*
101282861 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAC-ATAATTCTGTA
*
101282926 AATCGGGGGTAAAATG
65 AATCGAGGGTAAAATG
* * * * *
101282942 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA-CATAATTCTGT
*
101283006 AAA-CTGAGGGTAAAACG
64 AAATC-GAGGGTAAAATG
101283023 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
101283041 AGTACTTTGG
Statistics
Matches: 159, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
80 51 0.32
81 107 0.67
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACATAATTCTGTAA
ATCGAGGGTAAAATG
Found at i:101283069 original size:54 final size:54
Alignment explanation
Indices: 101282782--101283040 Score: 344
Period size: 54 Copynumber: 4.8 Consensus size: 54
101282772 GGTATTTTAG
* * * *
101282782 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA-CA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGA
* * *
101282835 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGA
* * * *
101282889 TAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGA
* * * *
101282943 TAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAA
1 TAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGA
101282997 TAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 TAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAG
101283041 AGTACTTTGG
Statistics
Matches: 178, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
53 47 0.26
54 130 0.73
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGA
Found at i:101286186 original size:24 final size:24
Alignment explanation
Indices: 101286135--101286323 Score: 296
Period size: 24 Copynumber: 8.0 Consensus size: 24
101286125 GCTTTATCAT
*
101286135 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
101286160 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
101286184 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
101286207 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
101286230 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
101286254 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
101286278 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
101286301 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
101286324 GCACTTCCTC
Statistics
Matches: 156, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
23 68 0.44
24 76 0.49
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:101286210 original size:23 final size:23
Alignment explanation
Indices: 101286156--101286322 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
101286146 CCTAGCCTCT
*
101286156 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101286179 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
101286203 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101286226 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
101286249 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
101286273 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
101286297 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101286320 TTT
1 TTT
101286323 TGCACTTCCT
Statistics
Matches: 139, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 71 0.51
24 68 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101286324 original size:47 final size:47
Alignment explanation
Indices: 101286156--101286323 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
101286146 CCTAGCCTCT
*
101286156 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
101286203 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
101286249 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
101286297 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
101286324 GCACTTCCTC
Statistics
Matches: 115, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
46 23 0.20
47 70 0.61
48 22 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:101287746 original size:27 final size:27
Alignment explanation
Indices: 101287689--101287948 Score: 301
Period size: 27 Copynumber: 9.7 Consensus size: 27
101287679 GGGTATTTTA
* *
101287689 GTAATTTTGTAAATCGA-GGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
101287715 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
101287742 TTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
101287769 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
101287796 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
101287823 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
101287850 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * **
101287877 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
101287904 ATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
101287931 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
101287949 AGTACTTTGG
Statistics
Matches: 198, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 16 0.08
27 180 0.91
28 2 0.01
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:101287966 original size:81 final size:81
Alignment explanation
Indices: 101287689--101287948 Score: 337
Period size: 81 Copynumber: 3.2 Consensus size: 81
101287679 GGGTATTTTA
* * * * * * * *
101287689 GTAATTTTGTAAATCGA-GGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACATTAATTTTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATGTA
101287753 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
101287769 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATGTA
*
101287834 AATCGGGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
101287850 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATAATAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATGT
*
101287914 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
101287931 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
101287949 AGTACTTTGG
Statistics
Matches: 157, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
80 18 0.11
81 138 0.88
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAATAATTATGTA
AATCGAGGGTAAAATG
Found at i:101291022 original size:3 final size:3
Alignment explanation
Indices: 101291014--101291061 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
101291004 CATATATATA
101291014 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
101291062 GCCAAATCCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:101293553 original size:3 final size:3
Alignment explanation
Indices: 101293545--101293580 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
101293535 AATGATCTTA
101293545 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
101293581 TACTATATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:101311743 original size:46 final size:48
Alignment explanation
Indices: 101311648--101311744 Score: 162
Period size: 46 Copynumber: 2.1 Consensus size: 48
101311638 AAATCTGAAG
*
101311648 TAAAAATAATTATTTTATTATTATTTTTATGTTTACAGTATCATAGAA
1 TAAAAATAATTATTTTATTATTATTTTAATGTTTACAGTATCATAGAA
*
101311696 TAAAAATAATTATTTTATTA-T-TTTTAATGTTTACAGTATGATAGAA
1 TAAAAATAATTATTTTATTATTATTTTAATGTTTACAGTATCATAGAA
101311742 TAA
1 TAA
101311745 TTGTGTGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 26 0.55
47 1 0.02
48 20 0.43
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (48 bp):
TAAAAATAATTATTTTATTATTATTTTAATGTTTACAGTATCATAGAA
Found at i:101313516 original size:24 final size:23
Alignment explanation
Indices: 101313480--101313526 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
101313470 GGTAATCGGA
* *
101313480 TTCTTAACTTATAACCAATTATAT
1 TTCTTAACATAT-ACCAATCATAT
*
101313504 TTCTTATCATATACCAATCATAT
1 TTCTTAACATATACCAATCATAT
101313527 ATTAATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (23 bp):
TTCTTAACATATACCAATCATAT
Found at i:101317520 original size:48 final size:48
Alignment explanation
Indices: 101317449--101317642 Score: 334
Period size: 48 Copynumber: 4.0 Consensus size: 48
101317439 CAAGATAAAT
* *
101317449 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
101317497 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
**
101317545 ATATGTATATGTGGTAAAGTTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
101317593 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
101317641 AT
1 AT
101317643 GTGTGTATAT
Statistics
Matches: 137, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 137 1.00
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:101317833 original size:37 final size:37
Alignment explanation
Indices: 101317783--101317922 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
101317773 GGAAATATAT
101317783 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
101317820 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
101317857 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
101317894 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
101317923 GGACTATTCG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:101319082 original size:43 final size:41
Alignment explanation
Indices: 101319027--101319181 Score: 168
Period size: 43 Copynumber: 3.7 Consensus size: 41
101319017 ATATCGTACA
* * *
101319027 ATGCCAACGTCCCAGACGTGGTCTTACATGCCATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AATCACATAT-G
* *
101319070 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAATCACATATG
* * * *
101319111 ATGCAAATGTCCCAAACATGGTCTTACACGTAATAACATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AATCACATA-TG
*
101319154 ATACCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
101319182 TAAGAACACA
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
41 25 0.27
42 18 0.19
43 50 0.54
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAATCACATATG
Found at i:101326019 original size:104 final size:104
Alignment explanation
Indices: 101325839--101326047 Score: 409
Period size: 104 Copynumber: 2.0 Consensus size: 104
101325829 GCCTGATCAG
101325839 CAAGCTAAATCATCAATTATATCATTAAAATCATTATTAACATTCAATTTTTTGAGTTAGGACTC
1 CAAGCTAAATCATCAATTATATCATTAAAATCATTATTAACATTCAATTTTTTGAGTTAGGACTC
101325904 ACACCTTATTTTACATTCTTCCGCAAAACACTTGTAAAT
66 ACACCTTATTTTACATTCTTCCGCAAAACACTTGTAAAT
101325943 CAAGCTAAATCATCAATTATATCATTAAAATCATTATTAACATTCAATTTTTTGAGTTAGGACTC
1 CAAGCTAAATCATCAATTATATCATTAAAATCATTATTAACATTCAATTTTTTGAGTTAGGACTC
*
101326008 ACACCTTATTTTACATTCTTCCGCAACACACTTGTAAAT
66 ACACCTTATTTTACATTCTTCCGCAAAACACTTGTAAAT
101326047 C
1 C
101326048 TTGCGATTTC
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (104 bp):
CAAGCTAAATCATCAATTATATCATTAAAATCATTATTAACATTCAATTTTTTGAGTTAGGACTC
ACACCTTATTTTACATTCTTCCGCAAAACACTTGTAAAT
Found at i:101331706 original size:25 final size:25
Alignment explanation
Indices: 101331677--101331724 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
101331667 TTATAATATG
* * *
101331677 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
101331702 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
101331725 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:101331775 original size:9 final size:9
Alignment explanation
Indices: 101331763--101331819 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
101331753 TTTGATAAAC
101331763 ATGATATGT
1 ATGATATGT
*
101331772 ATGATATGC
1 ATGATATGT
*
101331781 AGTTGACATGT
1 A--TGATATGT
*
101331792 ATGATATGCAC
1 ATGATATG--T
101331803 ATGATATGT
1 ATGATATGT
101331812 ATGATATG
1 ATGATATG
101331820 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:101331793 original size:20 final size:20
Alignment explanation
Indices: 101331761--101331831 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
101331751 ATTTTGATAA
*
101331761 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
**
101331781 AGTTGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
101331801 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
101331821 ACATGAGATGT
1 ACATGACATGT
101331832 TCATAAATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.34
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:101331956 original size:24 final size:24
Alignment explanation
Indices: 101331876--101332113 Score: 358
Period size: 24 Copynumber: 10.0 Consensus size: 24
101331866 GGAGGAAGTG
101331876 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
101331900 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
101331923 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
101331946 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
101331970 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
101331994 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
101332018 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
101332042 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
101332065 GAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
101332089 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
101332114 ATGATAAAGC
Statistics
Matches: 200, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
23 66 0.33
24 123 0.62
25 11 0.05
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:101333131 original size:19 final size:21
Alignment explanation
Indices: 101333107--101333145 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
101333097 ACATTTTAGT
101333107 TACTTAA-AGA-CTAAAATGA
1 TACTTAAGAGACCTAAAATGA
101333126 TACTTAAGAGACCTAAAATG
1 TACTTAAGAGACCTAAAATG
101333146 GAAATTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 3 0.17
21 8 0.44
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.26
Consensus pattern (21 bp):
TACTTAAGAGACCTAAAATGA
Found at i:101338374 original size:28 final size:28
Alignment explanation
Indices: 101338314--101338374 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
101338304 AGTGCATTGA
101338314 GGTGCATTCACGTAGCAATGAGCACCGT
1 GGTGCATTCACGTAGCAATGAGCACCGT
* ** * * *
101338342 AGTGCATTTGCGTAGTAGTGAGCACTGT
1 GGTGCATTCACGTAGCAATGAGCACCGT
101338370 GGTGC
1 GGTGC
101338375 TTAACAGAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (28 bp):
GGTGCATTCACGTAGCAATGAGCACCGT
Found at i:101340026 original size:21 final size:21
Alignment explanation
Indices: 101339974--101340027 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
101339964 AAATAGAATT
* *
101339974 ATTTAAAACAAT-TTTTTTTCT
1 ATTTAAAA-AATATCTTTTTCA
**
101339995 ATTTACCAAATATCTTTTTCA
1 ATTTAAAAAATATCTTTTTCA
101340016 ATTTAAAAAATA
1 ATTTAAAAAATA
101340028 AATATTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTAAAAAATATCTTTTTCA
Found at i:101340653 original size:30 final size:30
Alignment explanation
Indices: 101340617--101340679 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
101340607 ACTTATTTTA
101340617 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* * *
101340647 TTGTTAATTTTTTTATTATTTTAGAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
101340677 TTG
1 TTG
101340680 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:101351587 original size:18 final size:19
Alignment explanation
Indices: 101351564--101351599 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
101351554 CTAAAGATGA
*
101351564 TCCAAAGAAAA-AATATAG
1 TCCAAACAAAATAATATAG
101351582 TCCAAACAAAATAATATA
1 TCCAAACAAAATAATATA
101351600 ATATCTATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.61, C:0.14, G:0.06, T:0.19
Consensus pattern (19 bp):
TCCAAACAAAATAATATAG
Found at i:101361019 original size:48 final size:47
Alignment explanation
Indices: 101360945--101361066 Score: 131
Period size: 48 Copynumber: 2.6 Consensus size: 47
101360935 TTTAGTTCGC
* * * * *
101360945 AGTGGTTATACGACCACTGATTGAAGTATAAC-TAGGGCTCCAGTTGACT
1 AGTGGTTATGCGATCACGGGTTGAAGTATAACTTA-GGCT-CAATTGA-T
*
101360994 A-TGGTTATGCGGTCACGGGTTGAAGTATAACTTAGGCTCAATTGAT
1 AGTGGTTATGCGATCACGGGTTGAAGTATAACTTAGGCTCAATTGAT
* *
101361040 AGTGGTTATGCGATCATGGGTTCAAGT
1 AGTGGTTATGCGATCACGGGTTGAAGT
101361067 TTCATGATAC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
46 2 0.03
47 28 0.45
48 29 0.47
49 3 0.05
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (47 bp):
AGTGGTTATGCGATCACGGGTTGAAGTATAACTTAGGCTCAATTGAT
Found at i:101361182 original size:27 final size:27
Alignment explanation
Indices: 101361151--101361203 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
101361141 AGTGTTTTCC
101361151 AGTATAATCAACTTATTCTTTTTCTCA
1 AGTATAATCAACTTATTCTTTTTCTCA
101361178 AGTATAATCAACTTATTCTTTTTCTC
1 AGTATAATCAACTTATTCTTTTTCTC
101361204 CATCTCCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (27 bp):
AGTATAATCAACTTATTCTTTTTCTCA
Found at i:101361711 original size:49 final size:49
Alignment explanation
Indices: 101361658--101361759 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 49
101361648 AAGGGGTTGG
* * * *
101361658 GTTATACTTTAACCCGTGGCAGTATAACCACCATCAACTGGAAGCCCTA
1 GTTATACTTCAACCCGTGACAGTATAACCACCATAAACTGGAAGCCCAA
* * * *
101361707 GTTATACTTCAACCCGTGACCGTATAATCACCGTAAACTGGTAGCCCAA
1 GTTATACTTCAACCCGTGACAGTATAACCACCATAAACTGGAAGCCCAA
101361756 GTTA
1 GTTA
101361760 CAATGCGATT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
GTTATACTTCAACCCGTGACAGTATAACCACCATAAACTGGAAGCCCAA
Found at i:101362228 original size:33 final size:33
Alignment explanation
Indices: 101362185--101362252 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
101362175 TTAGCTGAGT
* *
101362185 TGGCAAAAGGGATGTTGAAAGCTTCAACTAAGG
1 TGGCAAAAGGGATGCTAAAAGCTTCAACTAAGG
* *
101362218 TGGCAGAAGGGATGCTAAAAGCTTCAACTGAGG
1 TGGCAAAAGGGATGCTAAAAGCTTCAACTAAGG
101362251 TG
1 TG
101362253 TTTGCCAAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (33 bp):
TGGCAAAAGGGATGCTAAAAGCTTCAACTAAGG
Found at i:101365893 original size:17 final size:17
Alignment explanation
Indices: 101365868--101365916 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
101365858 TAAGCGGAAT
101365868 AAAAATAAATAAATAAC
1 AAAAATAAATAAATAAC
* *
101365885 AAAAGTAAATAAATAAAG
1 AAAAATAAATAAAT-AAC
*
101365903 AAAAATAAACAAAT
1 AAAAATAAATAAAT
101365917 GAATTAAACC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (17 bp):
AAAAATAAATAAATAAC
Found at i:101371520 original size:6 final size:6
Alignment explanation
Indices: 101371509--101371544 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
101371499 AAAGGTAACT
*
101371509 GTGGCA GTGGCA GTGGCA GTGGCA GTGACA GTGGCA
1 GTGGCA GTGGCA GTGGCA GTGGCA GTGGCA GTGGCA
101371545 CCACCATCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.19, C:0.17, G:0.47, T:0.17
Consensus pattern (6 bp):
GTGGCA
Found at i:101372296 original size:22 final size:20
Alignment explanation
Indices: 101372246--101372298 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
101372236 AACATTTTTG
*
101372246 AATTGTAAAATTTTAAAATT
1 AATTGAAAAATTTTAAAATT
* **
101372266 TATAAAAAAATTATTAGAAATT
1 AATTGAAAAATT-TTA-AAATT
101372288 AATTGAAAAAT
1 AATTGAAAAAT
101372299 CATAAATTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
20 8 0.33
21 3 0.12
22 13 0.54
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
AATTGAAAAATTTTAAAATT
Found at i:101373491 original size:60 final size:60
Alignment explanation
Indices: 101373416--101373528 Score: 138
Period size: 60 Copynumber: 1.9 Consensus size: 60
101373406 GAATCAAACA
* * * *
101373416 AAAAAAATTAGGTACCAAATT-AGGAAAAAAAGTTAAGTTCATGTACCAAATTGGACCCCC
1 AAAAAAATTAAGTACC-AATTGAAGAAAAAAAGTCAAGTTCAGGTACCAAATTGGACCCCC
* * * *
101373476 AAAAAGATTAAGTACCAATTGAAGAAAAAATGTCAAGTTTAGGTACCAGATTG
1 AAAAAAATTAAGTACCAATTGAAGAAAAAAAGTCAAGTTCAGGTACCAAATTG
101373529 ACTAAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
59 4 0.09
60 40 0.91
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (60 bp):
AAAAAAATTAAGTACCAATTGAAGAAAAAAAGTCAAGTTCAGGTACCAAATTGGACCCCC
Found at i:101376113 original size:63 final size:63
Alignment explanation
Indices: 101375917--101376115 Score: 213
Period size: 63 Copynumber: 3.2 Consensus size: 63
101375907 GGCTGTGTGG
* * * *
101375917 TAGGCTGTGTAACTCACTGTTTGTGAATTA-AGGTTACACGGGCTAGGGACACGGGTGTGTGTC
1 TAGGCCGTGTAACTCACTATTTGTGAATTAGA-GTTACACGGGCTAGGGACACGAGCGTGTGTC
* * * * * * **
101375980 TAGGCCATGTAATTCATTATTTGTGAATTAGAGTCACACGGGCTAGGGACACGAACATACGTAC
1 TAGGCCGTGTAACTCACTATTTGTGAATTAGAGTTACACGGGCTAGGGACACGAGCGTGTGT-C
* * * *
101376044 -AGGCCGTGTAACTGACTATTTATGAATTAGAGTTACACGGGCCAGAGACACGAGCGTGTGTC
1 TAGGCCGTGTAACTCACTATTTGTGAATTAGAGTTACACGGGCTAGGGACACGAGCGTGTGTC
*
101376106 TAAGCCGTGT
1 TAGGCCGTGT
101376116 GAGAGATATT
Statistics
Matches: 108, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
62 1 0.01
63 105 0.97
64 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (63 bp):
TAGGCCGTGTAACTCACTATTTGTGAATTAGAGTTACACGGGCTAGGGACACGAGCGTGTGTC
Found at i:101377873 original size:13 final size:13
Alignment explanation
Indices: 101377855--101377879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101377845 CTCAACAGGG
101377855 ACACGCCCGTGTT
1 ACACGCCCGTGTT
101377868 ACACGCCCGTGT
1 ACACGCCCGTGT
101377880 GAGGTGGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (13 bp):
ACACGCCCGTGTT
Found at i:101377947 original size:48 final size:48
Alignment explanation
Indices: 101377875--101377975 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
101377865 GTTACACGCC
* *
101377875 CGTGTGAG-GTGGCTTAGGCCGTGTTAGAGTCTGCTAAATAAACAC-AG
1 CGTGTG-GTGTGGCTTAGGCCGTGTTACAATCTGCTAAATAAACACGAG
* *
101377922 CTGTGTGGTGTGGCTTAGGCCGTGTTACAATCTGTTAAATAGACACGAG
1 C-GTGTGGTGTGGCTTAGGCCGTGTTACAATCTGCTAAATAAACACGAG
101377971 CGTGT
1 CGTGT
101377976 AGTCTACCCG
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
47 2 0.04
48 42 0.89
49 3 0.06
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (48 bp):
CGTGTGGTGTGGCTTAGGCCGTGTTACAATCTGCTAAATAAACACGAG
Found at i:101380279 original size:20 final size:23
Alignment explanation
Indices: 101380239--101380281 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
101380229 GTAATTTTAA
101380239 AAAAAATAAGTAAAGATAAAAGT
1 AAAAAATAAGTAAAGATAAAAGT
101380262 AAAAAATAA-T-AA-ATAAAAGT
1 AAAAAATAAGTAAAGATAAAAGT
101380282 CTTCAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 2 0.10
22 1 0.05
23 9 0.45
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (23 bp):
AAAAAATAAGTAAAGATAAAAGT
Found at i:101388861 original size:40 final size:40
Alignment explanation
Indices: 101388817--101388893 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
101388807 TTACAGTACC
101388817 ACTTGGTGTGTAAGG-CTGGATGGGTCGATTTTATCCCCAT
1 ACTTGGTGTGT-AGGACTGGATGGGTCGATTTTATCCCCAT
* *
101388857 ACTTGGTGTGTGGGACTGGGTGGGTCGATTTTATCCC
1 ACTTGGTGTGTAGGACTGGATGGGTCGATTTTATCCC
101388894 AACATGGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.14, C:0.17, G:0.34, T:0.35
Consensus pattern (40 bp):
ACTTGGTGTGTAGGACTGGATGGGTCGATTTTATCCCCAT
Found at i:101393871 original size:5 final size:5
Alignment explanation
Indices: 101393861--101393898 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
101393851 ATAATACTAT
101393861 ATACC ATACC ATACC ATACC ATACC ATACC ATACC ATA
1 ATACC ATACC ATACC ATACC ATACC ATACC ATACC ATA
101393899 TACCATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (5 bp):
ATACC
Found at i:101393913 original size:12 final size:13
Alignment explanation
Indices: 101393870--101393915 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
101393860 TATACCATAC
101393870 CATACCATACCAT
1 CATACCATACCAT
101393883 ACCATACCATACCAT
1 --CATACCATACCAT
*
101393898 -ATACCATA-TAT
1 CATACCATACCAT
101393909 CATACCA
1 CATACCA
101393916 AAAAAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 2 0.07
12 14 0.48
15 13 0.45
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (13 bp):
CATACCATACCAT
Found at i:101405244 original size:15 final size:15
Alignment explanation
Indices: 101405224--101405254 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
101405214 CCCAAGATAA
101405224 GACATCTCTTCAATT
1 GACATCTCTTCAATT
101405239 GACATCTCTTCAATT
1 GACATCTCTTCAATT
101405254 G
1 G
101405255 GACTTGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.39
Consensus pattern (15 bp):
GACATCTCTTCAATT
Found at i:101405846 original size:35 final size:35
Alignment explanation
Indices: 101405807--101405881 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
101405797 ATAATGTAAC
101405807 CAATTCTTGTATGTGTTTTTATTACTTTCCTCTTT
1 CAATTCTTGTATGTGTTTTTATTACTTTCCTCTTT
101405842 CAATTCTTGTATGTGTTTTTATTACTTTCCTCTTT
1 CAATTCTTGTATGTGTTTTTATTACTTTCCTCTTT
101405877 CAATT
1 CAATT
101405882 TTTTTTAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.16, C:0.17, G:0.08, T:0.59
Consensus pattern (35 bp):
CAATTCTTGTATGTGTTTTTATTACTTTCCTCTTT
Found at i:101409752 original size:44 final size:46
Alignment explanation
Indices: 101409647--101409764 Score: 134
Period size: 46 Copynumber: 2.6 Consensus size: 46
101409637 CTACCGCTAT
* * * **
101409647 TGCTCCACTGCAACCTCAGAGAGATATGGTTCGTGTATTTTTATCC
1 TGCTCCACTGCAACTTCAGAGAGATAAGGTTCGTGTACTTCGATCC
*
101409693 TGCTCTACTGCAACTTCAGAGAGATAAGGATT-GTG-ACTTCGAT-C
1 TGCTCCACTGCAACTTCAGAGAGATAAGG-TTCGTGTACTTCGATCC
* *
101409737 TGCTCCACTGTAACTTCAGGGAGATAAG
1 TGCTCCACTGCAACTTCAGAGAGATAAG
101409765 ATCTGCTAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 26 0.42
45 5 0.08
46 29 0.47
47 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (46 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGGTTCGTGTACTTCGATCC
Found at i:101409988 original size:88 final size:88
Alignment explanation
Indices: 101409838--101410179 Score: 488
Period size: 88 Copynumber: 3.9 Consensus size: 88
101409828 GTAATTTTCA
* *
101409838 GCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTTGATTTGCTCCACTACTGCTTAA
1 GCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATTTGCTCCACTACTGCTTAA
* *
101409903 GGAGGCAAGATCTATAATCTT-G
66 GGAGACAAGATCTACAATCTTCG
* * * * *
101409925 GACCTGTTACTCTACTACTTAGGGGGTTAAGGCTCACTGTATTCGATTTGTTCCACTATTGCTTA
1 G-CCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATTTGCTCCACTACTGCTTA
* * *
101409990 GGGAGACAAAATTTACAATCTTCG
65 AGGAGACAAGATCTACAATCTTCG
*
101410014 GCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGCCTTTGATTTGCTCCACTACTGCTTAA
1 GCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATTTGCTCCACTACTGCTTAA
101410079 GGAGACAAGATCTACAATCTTCG
66 GGAGACAAGATCTACAATCTTCG
* * * ** *
101410102 GCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGCCTTCGATCCGCTCCACTACTGCTTAG
1 GCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATTTGCTCCACTACTGCTTAA
*
101410167 GGAGATAAGATCT
66 GGAGACAAGATCT
101410180 GTGAATTCAC
Statistics
Matches: 226, Mismatches: 27, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
87 1 0.00
88 223 0.99
89 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (88 bp):
GCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTTGATTTGCTCCACTACTGCTTAA
GGAGACAAGATCTACAATCTTCG
Found at i:101410145 original size:44 final size:44
Alignment explanation
Indices: 101410009--101410145 Score: 118
Period size: 44 Copynumber: 3.1 Consensus size: 44
101409999 AATTTACAAT
*
101410009 CTTCGGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGC
1 CTTCGGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGC
* *** * * * ** * *
101410053 CTTTGATTTGCT-CCACTACTGCTTAAGGAGACAAGATCTACAAT--
1 CTTCGGCCTGTTACC-CTACTACTTAAGGGGTTAAG-GCT-CACTGC
101410097 CTTCGGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGC
1 CTTCGGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGC
101410141 CTTCG
1 CTTCG
101410146 ATCCGCTCCA
Statistics
Matches: 64, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
42 3 0.05
43 4 0.06
44 50 0.78
45 4 0.06
46 3 0.05
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (44 bp):
CTTCGGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTCACTGC
Found at i:101410160 original size:44 final size:44
Alignment explanation
Indices: 101410024--101410165 Score: 103
Period size: 44 Copynumber: 3.2 Consensus size: 44
101410014 GCCTGTTACC
* * **
101410024 CTACTACTTAGGGGGTTAAGGCTCACTGCCTTTGATTTGCTCCA
1 CTACTACTTAAGGGGTTAAGGCTCACTGCCTTCGATCCGCTCCA
* * ** * * * *
101410068 CTACTGCTTAAGGAGACAAGATCTACAAT--CTTCG-GCCTGTTACC-
1 CTACTACTTAAGGGGTTAAG-GCT-CACTGCCTTCGATCC-GCT-CCA
101410112 CTACTACTTAAGGGGTTAAGGCTCACTGCCTTCGATCCGCTCCA
1 CTACTACTTAAGGGGTTAAGGCTCACTGCCTTCGATCCGCTCCA
*
101410156 CTACTGCTTA
1 CTACTACTTA
101410166 GGGAGATAAG
Statistics
Matches: 69, Mismatches: 21, Indels: 16
0.65 0.20 0.15
Matches are distributed among these distances:
42 3 0.04
43 4 0.06
44 53 0.77
45 6 0.09
46 3 0.04
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (44 bp):
CTACTACTTAAGGGGTTAAGGCTCACTGCCTTCGATCCGCTCCA
Found at i:101417728 original size:388 final size:388
Alignment explanation
Indices: 101417012--101417788 Score: 1536
Period size: 388 Copynumber: 2.0 Consensus size: 388
101417002 TCACAGTATT
101417012 TTCAATCATTTCACCTATCATCACTATGTCTGAGAAGCTTTTGGTGGTACTCCCTAACATATGAG
1 TTCAATCATTTCACCTATCATCACTATGTCTGAGAAGCTTTTGGTGGTACTCCCTAACATATGAG
101417077 TGATAAAAGAAGCCTTCAAAGTGTTGATAAAGAGAATCGTAGTTTCTTATTCTAAAACGGCGGCT
66 TGATAAAAGAAGCCTTCAAAGTGTTGATAAAGAGAATCGTAGTTTCTTATTCTAAAACGGCGGCT
101417142 GAACTTGTATAGCAATTTCTCTCCATCTTTGCGCATACTGTCTGAAACTTTCATTCAGTTTCTTC
131 GAACTTGTATAGCAATTTCTCTCCATCTTTGCGCATACTGTCTGAAACTTTCATTCAGTTTCTTC
101417207 TCCATATTCTGGAGAGTAATCCTGTCAGGAGTCATATCTGTCACATGACTATACTGTTTCATAAA
196 TCCATATTCTGGAGAGTAATCCTGTCAGGAGTCATATCTGTCACATGACTATACTGTTTCATAAA
101417272 GGCTTAAGTTAGGACTTTCCATGAGTTAATCTTAGCACGGCTCAATTGGTTATACCATTTGGATG
261 GGCTTAAGTTAGGACTTTCCATGAGTTAATCTTAGCACGGCTCAATTGGTTATACCATTTGGATG
101417337 CCGCCCCAACCAGACTATCCTGGAAGTAGTGAATCAATAACTGGTCATTGTTGACGTATCCAG
326 CCGCCCCAACCAGACTATCCTGGAAGTAGTGAATCAATAACTGGTCATTGTTGACGTATCCAG
*
101417400 TTCAATCATTTCACCTATCATCACTATGTCTGAGAAGCTTTTGGTGGTACTCCTTAACATATGAG
1 TTCAATCATTTCACCTATCATCACTATGTCTGAGAAGCTTTTGGTGGTACTCCCTAACATATGAG
*
101417465 TGATAAAAGAAGCCTTCAAAGTGTTGATAAAGAGAATCGTAGTTTCTTATTCTAAAACGGTGGCT
66 TGATAAAAGAAGCCTTCAAAGTGTTGATAAAGAGAATCGTAGTTTCTTATTCTAAAACGGCGGCT
101417530 GAACTTGTATAGCAATTTCTCTCCATCTTTGCGCATACTGTCTGAAACTTTCATTCAGTTTCTTC
131 GAACTTGTATAGCAATTTCTCTCCATCTTTGCGCATACTGTCTGAAACTTTCATTCAGTTTCTTC
101417595 TCCATATTCTGGAGAGTAATCCTGTCAGGAGTCATATCTGTCACATGACTATACTGTTTCATAAA
196 TCCATATTCTGGAGAGTAATCCTGTCAGGAGTCATATCTGTCACATGACTATACTGTTTCATAAA
101417660 GGCTTAAGTTAGGACTTTCCATGAGTTAATCTTAGCACGGCTCAATTGGTTATACCATTTGGATG
261 GGCTTAAGTTAGGACTTTCCATGAGTTAATCTTAGCACGGCTCAATTGGTTATACCATTTGGATG
101417725 CCGCCCCAACCAGACTATCCTGGAAGTAGTGAATCAATAACTGGTCATTGTTGACGTATCCAG
326 CCGCCCCAACCAGACTATCCTGGAAGTAGTGAATCAATAACTGGTCATTGTTGACGTATCCAG
101417788 T
1 T
101417789 CATTCGCATT
Statistics
Matches: 387, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
388 387 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (388 bp):
TTCAATCATTTCACCTATCATCACTATGTCTGAGAAGCTTTTGGTGGTACTCCCTAACATATGAG
TGATAAAAGAAGCCTTCAAAGTGTTGATAAAGAGAATCGTAGTTTCTTATTCTAAAACGGCGGCT
GAACTTGTATAGCAATTTCTCTCCATCTTTGCGCATACTGTCTGAAACTTTCATTCAGTTTCTTC
TCCATATTCTGGAGAGTAATCCTGTCAGGAGTCATATCTGTCACATGACTATACTGTTTCATAAA
GGCTTAAGTTAGGACTTTCCATGAGTTAATCTTAGCACGGCTCAATTGGTTATACCATTTGGATG
CCGCCCCAACCAGACTATCCTGGAAGTAGTGAATCAATAACTGGTCATTGTTGACGTATCCAG
Found at i:101422121 original size:18 final size:19
Alignment explanation
Indices: 101422084--101422123 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
101422074 ATTTACATTT
* *
101422084 TTATTTGTTATTGTTTATA
1 TTATTTGTTAATGTTAATA
101422103 TTATTTG-TAATGTTAATA
1 TTATTTGTTAATGTTAATA
101422121 TTA
1 TTA
101422124 ATGGTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (19 bp):
TTATTTGTTAATGTTAATA
Found at i:101422985 original size:25 final size:24
Alignment explanation
Indices: 101422939--101422985 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
101422929 ATATATTTAC
*
101422939 TTCATTTTTTTATACATTATTAAT
1 TTCATTTTTTTATACATAATTAAT
101422963 TTCATTCTTTTTAT-CAATAATTA
1 TTCATT-TTTTTATAC-ATAATTA
101422986 TACCCAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.60
Consensus pattern (24 bp):
TTCATTTTTTTATACATAATTAAT
Found at i:101435701 original size:180 final size:180
Alignment explanation
Indices: 101435393--101435983 Score: 866
Period size: 180 Copynumber: 3.3 Consensus size: 180
101435383 ATTGGTAAAG
* * * ** *
101435393 ATTGAAGATCTTATTTCCCTGAAGTTGCAGTGGAATAGATCCTT-GCAGATGGTGAATCTTATAT
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGAT-CTTCGCAGATGGTGAATCTTATCT
* * * *
101435457 CTATGTATC-AGCAATAGAGCT-GATTTTACCACCAAGCCTTGA-CTCTCTGAGGTAGCAAGAGA
65 CTATGTATCGA-CAATAGAG-TAGATTTTACTACTAAGCCTT-ATCTCTCTGAAGTAGCAGGAGA
* * *
101435519 GCAAGTTGAAGAATGAGTCTTATATTCCTGAGGTAGCAAGGAAGCAGACTGAGA
127 GCAGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAGA
*
101435573 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCACAGATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
* *
101435638 CATGTATCGACAATTGAGTAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAGCAGGAGAGCAG
66 TATGTATCGACAATAGAGTAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAGCAGGAGAGCAG
* *
101435703 GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGTAAGTAGACTGAGA
131 GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAGA
* *
101435753 ATTGAAGATTTTATCTCCCTAAAGTTACAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
* * *
101435818 TATGTATCGGCAATGGAGCAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAGCAGGAGAGCAG
66 TATGTATCGACAATAGAGTAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAGCAGGAGAGCAG
* * *
101435883 GTTGAAGAACGAGTCTTATCTTCTTGAGGTAGTAAGGAAGCAGATTGAGA
131 GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAGA
* *
101435933 ATTGAAGATTTTATCTCCCCGAAGTTGCAGCGGAGCAGATTTTCGCAGATG
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATG
101435984 CAGGAGAGTA
Statistics
Matches: 373, Mismatches: 34, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
179 5 0.01
180 367 0.98
181 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (180 bp):
ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
TATGTATCGACAATAGAGTAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAGCAGGAGAGCAG
GTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAGA
Found at i:101436069 original size:112 final size:112
Alignment explanation
Indices: 101435871--101436084 Score: 374
Period size: 112 Copynumber: 1.9 Consensus size: 112
101435861 CTCTGAAGTA
* *
101435871 GCAGGAGAGCAGGTTGAAGAACGAGTCTTATCTTCTTGAGGTAGTAAGGAAGCAGATTGAGAATT
1 GCAGGAGAGCAGGTTGAAGAACGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAGAATT
101435936 GAAGATTTTATCTCCCCGAAGTTGCAGCGGAGCAGATTTTCGCAGAT
66 GAAGATTTTATCTCCCCGAAGTTGCAGCGGAGCAGATTTTCGCAGAT
* * *
101435983 GCAGGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGAATT
1 GCAGGAGAGCAGGTTGAAGAACGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAGAATT
*
101436048 GAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGAT
66 GAAGATTTTATCTCCCCGAAGTTGCAGCGGAGCAGAT
101436085 ATTTGCAAAT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 96 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (112 bp):
GCAGGAGAGCAGGTTGAAGAACGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAGAATT
GAAGATTTTATCTCCCCGAAGTTGCAGCGGAGCAGATTTTCGCAGAT
Found at i:101436215 original size:292 final size:292
Alignment explanation
Indices: 101435691--101436264 Score: 909
Period size: 292 Copynumber: 2.0 Consensus size: 292
101435681 CTCTGAAGTA
* *
101435691 GCAGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGTAAGTAGACTGAGAATT
1 GCAGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAGAATT
* *
101435756 GAAGATTTTATCTCCCTAAAGTTACAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCTCTAT
66 GAAGATTTTATCTCCCTAAAGTTACAGCGGAGCAGATATTCGCAAATGGTGAATCTTATCTCTAT
*
101435821 GTATCGGCAATGGAGCAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAGCAGGAGAGCAGGTT
131 GTATCGGCAATGGAGCAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAACAGGAGAGCAGGTT
* * * * *
101435886 GAAGAACGAGTCTTATCTTCTTGAGGTAGTAAGGAAGCAGATTGAGAATTGAAGATTTTATCTCC
196 GAAGAACGAGTCTTATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATTGAAGATTTTATCTCC
* *
101435951 CCGAAGTTGCAGCGGAGCAGATTTTCGCAGAT
261 CCGAAGTCGCAACGGAGCAGATTTTCGCAGAT
* *
101435983 GCAGGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGAATT
1 GCAGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAGAATT
* * *
101436048 GAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATATTTGCAAATGGTGAATCTTATCT-TCA
66 GAAGATTTTATCTCCCTAAAGTTACAGCGGAGCAGATATTCGCAAATGGTGAATCTTATCTCT-A
* *
101436112 TGTATCGGCAATGGAGCAGATTTTACTATTAAGCCTTATCTCTCTGAGGTAACAGGAGAGCAGGT
130 TGTATCGGCAATGGAGCAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAACAGGAGAGCAGGT
* *
101436177 TGAAGAATGAGT-TTGATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATTGAAGATTTTGTCT
195 TGAAGAACGAGTCTT-ATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATTGAAGATTTTATCT
* *
101436241 CCCTGAAGTCGCAACGGAGTAGAT
259 CCCCGAAGTCGCAACGGAGCAGAT
101436265 CTTTACAAGT
Statistics
Matches: 257, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
291 3 0.01
292 254 0.99
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (292 bp):
GCAGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAGAATT
GAAGATTTTATCTCCCTAAAGTTACAGCGGAGCAGATATTCGCAAATGGTGAATCTTATCTCTAT
GTATCGGCAATGGAGCAGATTTTACTACTAAGCCTTATCTCTCTGAAGTAACAGGAGAGCAGGTT
GAAGAACGAGTCTTATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATTGAAGATTTTATCTCC
CCGAAGTCGCAACGGAGCAGATTTTCGCAGAT
Found at i:101436286 original size:180 final size:179
Alignment explanation
Indices: 101435984--101436483 Score: 553
Period size: 180 Copynumber: 2.8 Consensus size: 179
101435974 TTCGCAGATG
* * * * *
101435984 CAGGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGAATTG
1 CAGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATTG
* * * * *
101436049 AAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATATTTGCAAATGGTGAATCTTATCTTCATG
66 AAGATTTTATCTCCCTGAAGTCGCAACGGAGCAGATATTTACAAATGGTGAATCTTATCTCCATA
* *
101436114 TATCGGCAATGGAGCAGATTTTACTATTAAGCCTTATCTCTCTGAGGTAA
131 TATCGGCAATGGAGCAGATTTTAC-ATCAAGCCTCATCTCTCTGAGGTAA
101436164 CAGGAGAGCAGGTTGAAGAATGAGT-TTGATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATT
1 CAGGAGAGCAGGTTGAAGAATGAGTCTT-ATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATT
* * * *
101436228 GAAGATTTTGTCTCCCTGAAGTCGCAACGGAGTAGATCTTTACAAGTGGTGAATCTTATCTCCAT
65 GAAGATTTTATCTCCCTGAAGTCGCAACGGAGCAGATATTTACAAATGGTGAATCTTATCTCCAT
* * * *
101436293 ATATTGGCAATGGAGCAGATTTTACCTCCAGCCTCATCTCTCTGAGGTAG
130 ATATCGGCAATGGAGCAGATTTTACATCAAGCCTCATCTCTCTGAGGTAA
* * * *
101436343 CTAGG-GAGCAGGTTGAAGAATGAG-----TCTTCCTGAAG-TAGCAAGGAAGTAGACTGA-AGG
1 C-AGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCT-AAGATAGCAAGGAAGCAAATTGAGA-A
* * * ** * *
101436400 TTGAGGATCTTATCT-CCTCGAAGTGGCAGTGGAGCAG--ATTGA-AAAT-G-GAATTTTATCTC
63 TTGAAGATTTTATCTCCCT-GAAGTCGCAACGGAGCAGATATTTACAAATGGTGAATCTTATCTC
*
101436459 CATGTATCGGCAATGGAGCAGATTT
127 CATATATCGGCAATGGAGCAGATTT
101436484 AATCCCATCT
Statistics
Matches: 278, Mismatches: 37, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
169 34 0.12
170 1 0.00
171 3 0.01
172 3 0.01
173 4 0.01
174 49 0.18
175 3 0.01
179 42 0.15
180 139 0.50
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (179 bp):
CAGGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTAAGATAGCAAGGAAGCAAATTGAGAATTG
AAGATTTTATCTCCCTGAAGTCGCAACGGAGCAGATATTTACAAATGGTGAATCTTATCTCCATA
TATCGGCAATGGAGCAGATTTTACATCAAGCCTCATCTCTCTGAGGTAA
Found at i:101438020 original size:18 final size:19
Alignment explanation
Indices: 101437983--101438022 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
101437973 ATTTACATTT
* *
101437983 TTATTTGTTATTGTTTATA
1 TTATTTGTTAATGTTAATA
101438002 TTATTTG-TAATGTTAATA
1 TTATTTGTTAATGTTAATA
101438020 TTA
1 TTA
101438023 ATGGTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (19 bp):
TTATTTGTTAATGTTAATA
Found at i:101438884 original size:25 final size:24
Alignment explanation
Indices: 101438838--101438884 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
101438828 ATATATTTAC
*
101438838 TTCATTTTTTTATACATTATTAAT
1 TTCATTTTTTTATACATAATTAAT
101438862 TTCATTCTTTTTAT-CAATAATTA
1 TTCATT-TTTTTATAC-ATAATTA
101438885 TACCCAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.60
Consensus pattern (24 bp):
TTCATTTTTTTATACATAATTAAT
Found at i:101443861 original size:21 final size:20
Alignment explanation
Indices: 101443837--101443876 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
101443827 TAAATTGTGA
101443837 TATTTATATTCTTAATTATAT
1 TATTTATATT-TTAATTATAT
*
101443858 TATTTATATTTTATTTATA
1 TATTTATATTTTAATTATA
101443877 ACAAATTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTATATTTTAATTATAT
Found at i:101448341 original size:30 final size:29
Alignment explanation
Indices: 101448301--101448357 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
101448291 TTTTTTTGAC
*
101448301 TTTTTTTCTAATTTGTTACCTAAACTTTT
1 TTTTTTTCTAATTTGATACCTAAACTTTT
101448330 TTTTTTGTCTAATTTGATACCTAAACTT
1 TTTTTT-TCTAATTTGATACCTAAACTT
101448358 GCCAATGTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.23, C:0.14, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTTTTTCTAATTTGATACCTAAACTTTT
Found at i:101449114 original size:29 final size:30
Alignment explanation
Indices: 101449062--101449123 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
101449052 TTTTGAGCAA
*
101449062 TTTAATTTTTTTCTTTTATGTTCTTTTAAC
1 TTTAATTTTTTTCTTTTATGTTCTATTAAC
* * *
101449092 TTTACTTTTTTTC-TTTATTTTCTATTATC
1 TTTAATTTTTTTCTTTTATGTTCTATTAAC
101449121 TTT
1 TTT
101449124 TGTTTCTCCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.15, C:0.11, G:0.02, T:0.73
Consensus pattern (30 bp):
TTTAATTTTTTTCTTTTATGTTCTATTAAC
Found at i:101449584 original size:31 final size:29
Alignment explanation
Indices: 101449517--101449585 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
101449507 ACAATAACAT
* ** *
101449517 AAATGGCTAAAATGTAATATTTCAAATAT
1 AAATGACTAAAATGTAATATGGCAAATAA
*
101449546 AAGTGACTAAAATGTAATATGAGGCAAATAA
1 AAATGACTAAAATGTAATAT--GGCAAATAA
101449577 AAATGACTA
1 AAATGACTA
101449586 TTTTGATAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 18 0.56
31 14 0.44
ACGTcount: A:0.51, C:0.07, G:0.14, T:0.28
Consensus pattern (29 bp):
AAATGACTAAAATGTAATATGGCAAATAA
Found at i:101450912 original size:118 final size:115
Alignment explanation
Indices: 101450768--101451035 Score: 331
Period size: 115 Copynumber: 2.3 Consensus size: 115
101450758 CAAAATCAAA
* * * * * * *
101450768 AGACTTCTTTATCAAATTTCATTTTTTTTTACTTA-GAAATACACATATTTTTGCAATTTCATTC
1 AGACTTCATTGTCAAATTTTA-ATTTTTTTACTTATG-AATACAC--ATTTCTGAAATTTCACTC
* **
101450832 ATTATAAAATTCATTATAATAGTAATAAAATAAAAATTATTACACCAAATTAAG
62 ATTACAAAATTCATTATAATAGTAATAAAATAAAAATTATTACACCAAACCAAG
* *
101450886 AGACTTCATTGTCAAATTTTAATTTTTATATTTATGAATACACATTTCTGAAATTTCACTCATTA
1 AGACTTCATTGTCAAATTTTAATTTTTTTACTTATGAATACACATTTCTGAAATTTCACTCATTA
* * *
101450951 CAAAATTCATTATAATATTAATAGAATAAAAATTATTAGACCAAACCAAG
66 CAAAATTCATTATAATAGTAATAAAATAAAAATTATTACACCAAACCAAG
* * *
101451001 AGACTTCATTGTCAAAATCTAATATTTTTACTTAT
1 AGACTTCATTGTCAAATTTTAATTTTTTTACTTAT
101451036 CAACTCAATT
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
115 93 0.72
117 17 0.13
118 19 0.15
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (115 bp):
AGACTTCATTGTCAAATTTTAATTTTTTTACTTATGAATACACATTTCTGAAATTTCACTCATTA
CAAAATTCATTATAATAGTAATAAAATAAAAATTATTACACCAAACCAAG
Found at i:101453535 original size:17 final size:17
Alignment explanation
Indices: 101453509--101453542 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101453499 TATATAATTG
*
101453509 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
101453526 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
101453543 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:101454743 original size:24 final size:24
Alignment explanation
Indices: 101454716--101454827 Score: 120
Period size: 24 Copynumber: 4.7 Consensus size: 24
101454706 GAAATGATTT
101454716 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
101454740 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
101454764 TGGCACTATGTGTGCGGATTGGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
101454788 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
101454813 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
101454828 GGTTAACATG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
24 70 0.97
25 2 0.03
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:101454828 original size:48 final size:48
Alignment explanation
Indices: 101454717--101454828 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 48
101454707 AAATGATTTT
* * * * * ** *
101454717 GGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGGATTTGTAT
1 GGCACTATGTGTGCGGATTGGAATGGCAATATGTATGCGAATTACTAA
* *
101454765 GGCACTATGTGTGCGGATTGGAATGTCAATATGTATGTGAATTACTAA
1 GGCACTATGTGTGCGGATTGGAATGGCAATATGTATGCGAATTACTAA
101454813 GGCACTATGTGTGCGG
1 GGCACTATGTGTGCGG
101454829 GTTAACATGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.33
Consensus pattern (48 bp):
GGCACTATGTGTGCGGATTGGAATGGCAATATGTATGCGAATTACTAA
Found at i:101455356 original size:69 final size:70
Alignment explanation
Indices: 101455225--101455356 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 70
101455215 AGTTTATTTC
* * * *
101455225 TAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
101455290 TTAGT
66 TTAGT
101455295 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
101455357 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:101455564 original size:39 final size:39
Alignment explanation
Indices: 101455512--101455702 Score: 265
Period size: 39 Copynumber: 4.9 Consensus size: 39
101455502 ATTTGATGTA
101455512 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
101455551 TATCCGGACTTAAGGTCTGCAGGCTTCCTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* *
101455590 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
101455630 TATCCGGACTTAAGATCCGCAGGCTTCGTCCTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
101455669 TATCTGGACTTAAGGTCCGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
101455703 TACTATATCT
Statistics
Matches: 134, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 100 0.75
40 34 0.25
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:101455642 original size:79 final size:78
Alignment explanation
Indices: 101455512--101455702 Score: 256
Period size: 79 Copynumber: 2.4 Consensus size: 78
101455502 ATTTGATGTA
* * *
101455512 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGGCTT
1 TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTT
101455577 CCTGCTGGAATTG
66 CCTGCTGGAATTG
*
101455590 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCT
1 TATCCGGACTT-AAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCT
* * * * *
101455655 TCGTCCTGGTACTA
65 TCCTGCTGGAATTG
* ** *
101455669 TATCTGGACTTAAGGTCCGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGG
101455703 TACTATATCT
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 30 0.31
79 68 0.69
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTT
CCTGCTGGAATTG
Found at i:101455720 original size:118 final size:118
Alignment explanation
Indices: 101455512--101455734 Score: 320
Period size: 118 Copynumber: 1.9 Consensus size: 118
101455502 ATTTGATGTA
* * * *
101455512 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTCCTGGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * *
101455577 CCTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
66 CCTACTGGAACTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
* *
101455630 TATCCGGACTTAAGATCCGCAGGCTTCGTCCTGGTACTATATCTGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTCCTGGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * * * *
101455695 CGTACTGGTACTATATCTGGGCTTAAAGTCCCGTAGGCTT
66 CCTACTGGAACTATATCCGGGCTTAAAGACCCGCAGGCTT
101455735 TGTGTTGGTG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 91 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (118 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTCCTGGAACTATATCCGGACTTAAGGTCCGCAGGCTT
CCTACTGGAACTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
Found at i:101458188 original size:137 final size:137
Alignment explanation
Indices: 101457942--101458228 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
101457932 TATTGGGCCT
** *
101457942 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTATAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
101458007 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
101458072 CATATGC
131 CATATGC
101458079 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
101458144 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
101458209 CATATGC
131 CATATGC
101458216 AAGCCCATTTGGG
1 AAGCCCATTTGGG
101458229 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:101460035 original size:26 final size:26
Alignment explanation
Indices: 101459999--101460108 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
101459989 CATGAAATTC
101459999 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101460025 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
101460051 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
101460077 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
101460103 TTATCA
1 TTATCA
101460109 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101465998 original size:26 final size:26
Alignment explanation
Indices: 101465962--101466071 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
101465952 CATAAAATTC
101465962 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101465988 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
101466014 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
101466040 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
101466066 TTATCA
1 TTATCA
101466072 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101468818 original size:451 final size:452
Alignment explanation
Indices: 101467973--101468848 Score: 1520
Period size: 451 Copynumber: 1.9 Consensus size: 452
101467963 TTTCTTGTTA
*
101467973 ACACTAATAAGAAATCATCATCTCTTTCTCCGATCATACTAGCATTAGCAACATCTGCTTTACCT
1 ACACTAATAAGAAATCATCATCTCTTTCTCCGACCATACTAGCATTAGCAACATCTGCTTTACCT
* *
101468038 TTCTCGTCGTTTTTGGCATCCCTCTTAATTTTATTTTGAAGTTTCTAGCATTCTACCTTAACGTA
66 TTCTCGTCATTTTCGGCATCCCTCTTAATTTTATTTTGAAGTTTCTAGCATTCTACCTTAACGTA
*
101468103 ACCTATCTTTTTGCAATAGCCACAGTATTTGTCACGATTCCTAGATTTGGATCTCACTTTAGACC
131 ACCCATCTTTTTGCAATAGCCACAGTATTTGTCACGATTCCTAGATTTGGATCTCACTTTAGACC
* *
101468168 TGTTTTAATATGAATTTTTGGAATGTTATCAGCCTCTTGAACATTCTAAACGTGTAGAAACGTTA
196 TGTTCTAACATGAATTTTTGGAATGTTATCAGCCTCTTGAACATTCTAAACGTGTAGAAACGTTA
* **
101468233 TTTTAACACTAACCTATTGGCTAAGGATTTCATTGTGTACAAGGCTTCCAGTTTCTTCCATAATT
261 TTTTAACACTAACCTATTGGCCAAGGATTTCATCATGTACAAGGCTTCCAGTTTCTTCCATAATT
101468298 TAATCGTTGTTTTCTCCTTCAAAACCTCTTGTAACACATTATTAGTTAAACATAATTGAATTATG
326 TAATCGTTGTTTTCTCCTTCAAAACCTCTTGTAACACATTATTAGTTAAACATAATTGAATTATG
101468363 GATAGAGTC-TTTTTTTCTAACCTATCACATTCTACACATTATTAGAGTCTTTCACTCATTG
391 GATAGAGTCTTTTTTTTCTAACCTATCACATTCTACACATTATTAGAGTCTTTCACTCATTG
* *
101468424 ACACTAATAAGAAATCATCATCTCTTTCTCCGACCATACTGGCATTAGCAACATCTGCTTTATCT
1 ACACTAATAAGAAATCATCATCTCTTTCTCCGACCATACTAGCATTAGCAACATCTGCTTTACCT
* *
101468489 TTCTCGTCATTTTCGGCATCCCTCTTAATTTTATTTTGAAGTTTCTAGCATTCTACTTTAACGTG
66 TTCTCGTCATTTTCGGCATCCCTCTTAATTTTATTTTGAAGTTTCTAGCATTCTACCTTAACGTA
* *
101468554 ACCCATCTTTTTGCAATAGCCACAGTATTTGTCATGATTCCTAGATTTGGATCTCGCTTTAGACC
131 ACCCATCTTTTTGCAATAGCCACAGTATTTGTCACGATTCCTAGATTTGGATCTCACTTTAGACC
* * * * * *
101468619 TGTTCTAACATGAATTTTTGGATTTTTGTCAGTCTCTTGAACATTCTGAATGTGTAGAAACGTTA
196 TGTTCTAACATGAATTTTTGGAATGTTATCAGCCTCTTGAACATTCTAAACGTGTAGAAACGTTA
*
101468684 TTTTAACACTAACCTGTTGGCCAAGGATTTCATCATGTACAAGGCTTCCAGTTTCTTCCATAATT
261 TTTTAACACTAACCTATTGGCCAAGGATTTCATCATGTACAAGGCTTCCAGTTTCTTCCATAATT
* *
101468749 TAATCGTTGTTTTCTCCTTCAAAATCTCTTGTAACACATTATTAGTTAAACATAATTGAATTGTG
326 TAATCGTTGTTTTCTCCTTCAAAACCTCTTGTAACACATTATTAGTTAAACATAATTGAATTATG
*
101468814 GATAGAGTCTTTTTTTTCTAACCTATCCCATTCTA
391 GATAGAGTCTTTTTTTTCTAACCTATCACATTCTA
101468849 ACTATTCCAT
Statistics
Matches: 399, Mismatches: 25, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
451 375 0.94
452 24 0.06
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.40
Consensus pattern (452 bp):
ACACTAATAAGAAATCATCATCTCTTTCTCCGACCATACTAGCATTAGCAACATCTGCTTTACCT
TTCTCGTCATTTTCGGCATCCCTCTTAATTTTATTTTGAAGTTTCTAGCATTCTACCTTAACGTA
ACCCATCTTTTTGCAATAGCCACAGTATTTGTCACGATTCCTAGATTTGGATCTCACTTTAGACC
TGTTCTAACATGAATTTTTGGAATGTTATCAGCCTCTTGAACATTCTAAACGTGTAGAAACGTTA
TTTTAACACTAACCTATTGGCCAAGGATTTCATCATGTACAAGGCTTCCAGTTTCTTCCATAATT
TAATCGTTGTTTTCTCCTTCAAAACCTCTTGTAACACATTATTAGTTAAACATAATTGAATTATG
GATAGAGTCTTTTTTTTCTAACCTATCACATTCTACACATTATTAGAGTCTTTCACTCATTG
Found at i:101471033 original size:2 final size:2
Alignment explanation
Indices: 101471026--101471057 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
101471016 AGAAATTAAA
101471026 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101471058 GTGAATTGCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101474758 original size:17 final size:18
Alignment explanation
Indices: 101474716--101474764 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
101474706 AGTTGAAAAG
101474716 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
101474735 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
101474752 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
101474765 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:101475647 original size:40 final size:40
Alignment explanation
Indices: 101475581--101475747 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
101475571 AAATTGAATG
* * *
101475581 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
101475620 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
101475660 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
101475700 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
101475740 ATATCCGG
1 ATATCCGG
101475748 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:101482752 original size:17 final size:18
Alignment explanation
Indices: 101482710--101482758 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
101482700 AGTTGAAAAG
101482710 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
101482729 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
101482746 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
101482759 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:101483642 original size:40 final size:40
Alignment explanation
Indices: 101483576--101483742 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
101483566 AAATTGAATG
* * *
101483576 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
101483615 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
101483655 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
101483695 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
101483735 ATATCCGG
1 ATATCCGG
101483743 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:101485781 original size:18 final size:19
Alignment explanation
Indices: 101485755--101485793 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
101485745 ATATATATTT
* *
101485755 ATTTTTATATAGTA-TATA
1 ATTTATATATAATACTATA
101485773 ATTTATATATAATACTATA
1 ATTTATATATAATACTATA
101485792 AT
1 AT
101485794 GTAACCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (19 bp):
ATTTATATATAATACTATA
Found at i:101488094 original size:16 final size:16
Alignment explanation
Indices: 101488073--101488111 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
101488063 AAAATAAAGA
101488073 AAATAAAT-AGATAAAT
1 AAATAAATAAGAT-AAT
*
101488089 AAATAAGTAAGATAAT
1 AAATAAATAAGATAAT
101488105 AAATAAA
1 AAATAAA
101488112 ACAATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (16 bp):
AAATAAATAAGATAAT
Found at i:101488167 original size:24 final size:23
Alignment explanation
Indices: 101488125--101488169 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
101488115 ATTTAATTGG
* *
101488125 AAAACGAAAGAATGTAAGTAAAT
1 AAAACAAAAGAATGAAAGTAAAT
101488148 AAAACAAAAGTAATGAAAGTAA
1 AAAACAAAAG-AATGAAAGTAA
101488170 GAAATAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (23 bp):
AAAACAAAAGAATGAAAGTAAAT
Found at i:101505718 original size:3 final size:3
Alignment explanation
Indices: 101505710--101505740 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
101505700 TAAAGCAGAT
101505710 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
101505741 AAAGAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:101506499 original size:47 final size:47
Alignment explanation
Indices: 101506430--101506523 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
101506420 CAAAGACATG
101506430 TTTGATAATGATTTTGCATAAAACAAAATTCATGCATCTTCTCTAAA
1 TTTGATAATGATTTTGCATAAAACAAAATTCATGCATCTTCTCTAAA
101506477 TTTGATAATGATTTTGCATAAAACAAAATTCATGCATCTTCTCTAAA
1 TTTGATAATGATTTTGCATAAAACAAAATTCATGCATCTTCTCTAAA
101506524 CCCTACTTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (47 bp):
TTTGATAATGATTTTGCATAAAACAAAATTCATGCATCTTCTCTAAA
Found at i:101508059 original size:27 final size:25
Alignment explanation
Indices: 101508016--101508065 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
101508006 AATAGTTTTT
101508016 TAAAATACTTTTAATTTTGAAAAAA
1 TAAAATACTTTTAATTTTGAAAAAA
* *
101508041 TAAAATCACATTTTCATTTTTAAAA
1 TAAAAT-AC-TTTTAATTTTGAAAA
101508066 TTCAATCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 2 0.10
27 13 0.62
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (25 bp):
TAAAATACTTTTAATTTTGAAAAAA
Found at i:101508700 original size:13 final size:13
Alignment explanation
Indices: 101508682--101508713 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
101508672 AAATGCCTCT
*
101508682 TTAATATTTTTCA
1 TTAATATTTGTCA
101508695 TTAATATTTGTCA
1 TTAATATTTGTCA
101508708 TTAATA
1 TTAATA
101508714 CATTCATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (13 bp):
TTAATATTTGTCA
Found at i:101509587 original size:7 final size:7
Alignment explanation
Indices: 101509575--101509608 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
101509565 TAATATTCAT
101509575 TTCTAAA
1 TTCTAAA
101509582 TTCTAAA
1 TTCTAAA
101509589 TTCTAAA
1 TTCTAAA
*
101509596 TTTTAAA
1 TTCTAAA
*
101509603 ATCTAA
1 TTCTAA
101509609 TGGGGATTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (7 bp):
TTCTAAA
Found at i:101509994 original size:2 final size:2
Alignment explanation
Indices: 101509989--101510018 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
101509979 AAAAAAAAAA
101509989 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101510019 CATTGGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101511380 original size:9 final size:9
Alignment explanation
Indices: 101511368--101511414 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
101511358 TAATTAAAAA
101511368 TTATAATTT
1 TTATAATTT
*
101511377 TTATACTTT
1 TTATAATTT
101511386 TTCAATAATTT
1 TT--ATAATTT
*
101511397 TAATAATTT
1 TTATAATTT
101511406 TTA-AATTT
1 TTATAATTT
101511414 T
1 T
101511415 AAAAATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
8 6 0.19
9 19 0.59
11 7 0.22
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (9 bp):
TTATAATTT
Found at i:101511395 original size:20 final size:20
Alignment explanation
Indices: 101511370--101511407 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
101511360 ATTAAAAATT
* *
101511370 ATAATTTTTATACTTTTTCA
1 ATAATTTTAATAATTTTTCA
101511390 ATAATTTTAATAATTTTT
1 ATAATTTTAATAATTTTT
101511408 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
ATAATTTTAATAATTTTTCA
Found at i:101514511 original size:104 final size:104
Alignment explanation
Indices: 101514387--101514878 Score: 655
Period size: 104 Copynumber: 4.7 Consensus size: 104
101514377 CAGCGAACTA
* **
101514387 TTAGAAGTTGCGATCTTAAATCAATGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
1 TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
*
101514452 CCTTAATAACATCATA-TGTGAACGTAGGTCAGT-GAGCTG
66 CCTTAATAACATCA-ACTGTGAACGTAGGTCA-TCAAGCTG
* * * * *
101514491 TTAGGAGTTGCAATATTAAATTAGCGAACTTAAATAATTGGAGGCTGCGATCTTAAATCAGCTAG
1 TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
* * * * * * * *
101514556 CCTTAATAACATTAACTATGAATGGAGGTTAGCGAGTTG
66 CCTTAATAACATCAACTGTGAACGTAGGTCATCAAGCTG
* * **
101514595 TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGGGATCTGAAATCAATTAG
1 TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
* *
101514660 CCTTAATAACATCAGCTGTGAACGTAGGTTATCAAGCTG
66 CCTTAATAACATCAACTGTGAACGTAGGTCATCAAGCTG
* *
101514699 TTAGGAGTTGCGATATTAAATCAGCGAACTCAAATAATTAGAGGTTGCGATCTTAAATCAGCTAG
1 TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
*
101514764 CCTTAATAATATCAACTGTGAACGTAGGTCATCAAGCTG
66 CCTTAATAACATCAACTGTGAACGTAGGTCATCAAGCTG
* * * * * * *
101514803 ATAAGAGTTGCGATCTTAAATCAGCGAACTAAAATAATTGAAGGTTGTGATCTTAAATCAACTAA
1 TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
101514868 CCTTAATAACA
66 CCTTAATAACA
101514879 CCAGTTGCAA
Statistics
Matches: 335, Mismatches: 51, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
103 1 0.00
104 334 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (104 bp):
TTAGGAGTTGCGATCTTAAATCAGCGAACTCAAATAATTGGAGGTTGCGATCTTAAATCAGCTAG
CCTTAATAACATCAACTGTGAACGTAGGTCATCAAGCTG
Found at i:101517489 original size:4 final size:4
Alignment explanation
Indices: 101517480--101517505 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
101517470 TATTTTGCCA
101517480 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
101517506 GCTTGCGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:101529489 original size:43 final size:43
Alignment explanation
Indices: 101529441--101530226 Score: 356
Period size: 43 Copynumber: 18.1 Consensus size: 43
101529431 GTGGAATCAG
* * *
101529441 TGAATTCACA-AGCCTTATCTCCCTAAGCAGTAGGGTAACAGGC
1 TGAATTCACAGA-CCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * *
101529484 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
** * ** ** * *
101529526 TCGAAGACGAAAGGTCTTAAAACCCTAAGCAGTAGGGTAACAGAC
1 T-GAATTC-ACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
** * ** * * * * *
101529571 CAAATT-GCAGATTTTATCTCCCTAAACAATAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* ** * * *
101529612 TCGAATGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
1 T-GAATTC-ACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * *
101529657 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
** ** * * * *
101529699 TCGAAGACGATGGGCCTTAAACCGCTAAGCAGTAGGGTAACAGGC
1 T-GAATTC-ACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * ** * * * *
101529744 TAAATTTACAGATATTATCTCCTTAAGCAGTAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* ** ** * * *
101529786 TCAAAGGCGATGGCCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
1 T-GAATTC-ACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * *
101529831 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* ** * * * *
101529873 TCAAAGGCA-ATGGGCCTTAAACCCCTAAGCAGTAGGGTAATAGGC
1 T-GAATTCACA--GACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * * * * * * *
101529918 TAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
** * * * *
101529960 TCGAAGACGA-AGGGCCTTAAACCCCTAAGCAGTAGGGTAATAGGC
1 T-GAATTC-ACA-GACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * * *
101530005 TAAATTTACAGACCTTAACCCTCTAAGCAGTAGGGTAACAGGC
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* ** * * *
101530048 TGAATTTACAGATTTTAACCCCCTAAGCAGTAGGGTAGCAAGC
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * * * * *
101530091 -CAAATCTATAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGT
1 TGAATTC-ACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * * *
101530134 TGAATTCACAGATCTTAACCCCCTTAGTAGTAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
** * *
101530176 TCGAAGGCA-ATGAACCTTAAACCCCTAAGCAGTAGGGTAACAGGC
1 T-GAATTCACA-G-ACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
101530221 TGAATT
1 TGAATT
101530227 TACCATCCTA
Statistics
Matches: 524, Mismatches: 189, Indels: 59
0.68 0.24 0.08
Matches are distributed among these distances:
42 43 0.08
43 274 0.52
44 194 0.37
45 13 0.02
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (43 bp):
TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
Found at i:101529702 original size:87 final size:87
Alignment explanation
Indices: 101529461--101530045 Score: 823
Period size: 87 Copynumber: 6.7 Consensus size: 87
101529451 AGCCTTATCT
*
101529461 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
** * *
101529526 TCGAAGACGAAAGGTCTTAAAA
66 TCGAAGACGATGGGCCTTAAAC
* * * * * * * *
101529548 CCCTAAGCAGTAGGGTAACAGACCAAA-TTGCAGATTTTATCTCCCTAAACAATAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
101529612 TCGAATG-CGATGGGCCTTAAAC
66 TCGAA-GACGATGGGCCTTAAAC
*
101529634 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
101529699 TCGAAGACGATGGGCCTTAAAC
66 TCGAAGACGATGGGCCTTAAAC
* * * * *
101529721 CGCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATATTATCTCCTTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
* * *
101529786 TCAAAGGCGATGGCCCTTAAAC
66 TCGAAGACGATGGGCCTTAAAC
*
101529808 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
* * *
101529873 TCAAAGGCAATGGGCCTTAAAC
66 TCGAAGACGATGGGCCTTAAAC
* * * * *
101529895 CCCTAAGCAGTAGGGTAATAGGCTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
*
101529960 TCGAAGACGAAGGGCCTTAAAC
66 TCGAAGACGATGGGCCTTAAAC
* * * *
101529982 CCCTAAGCAGTAGGGTAATAGGCTAAATTTACAGACCTTAACCCTCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
101530046 GCTGAATTTA
Statistics
Matches: 439, Mismatches: 56, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
86 72 0.16
87 367 0.84
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
TCGAAGACGATGGGCCTTAAAC
Found at i:101530357 original size:45 final size:44
Alignment explanation
Indices: 101530276--101530365 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 44
101530266 AAGTCACAAG
* * **
101530276 TCTTATCTCCCTGAAGTTTCAGTGGAGTAGACTGAAGATAGTGAA
1 TCTTATCTCCCTGAAGTTGCAGAGGAACAGACTGAAGATA-TGAA
* * *
101530321 TCTTATTTCCCTGAAGTTGCAGAGGAACAGATTGAAGCTATGAA
1 TCTTATCTCCCTGAAGTTGCAGAGGAACAGACTGAAGATATGAA
101530365 T
1 T
101530366 AAATAGATCT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 5 0.13
45 33 0.87
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGAGGAACAGACTGAAGATATGAA
Found at i:101552789 original size:16 final size:15
Alignment explanation
Indices: 101552764--101552793 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
101552754 AAATAATTTA
101552764 TAAAGAAAATATAAT
1 TAAAGAAAATATAAT
101552779 TAAAGATAAATATAA
1 TAAAGA-AAATATAA
101552794 AGTGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
TAAAGAAAATATAAT
Found at i:101554697 original size:23 final size:24
Alignment explanation
Indices: 101554638--101554723 Score: 85
Period size: 22 Copynumber: 3.8 Consensus size: 24
101554628 ATTTGATCCT
*
101554638 AATTCTAAAAAA-ATAT-ATAAT-
1 AATTTTAAAAAATATATAATAATA
* * *
101554659 TATTTTCAAAGA-ATATAATAATA
1 AATTTTAAAAAATATATAATAATA
101554682 AATTTT-AAAAATATATAA-AATA
1 AATTTTAAAAAATATATAATAATA
101554704 AATGTTTAAAAAATATATAA
1 AAT-TTTAAAAAATATATAA
101554724 CAAATTAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 12 0.22
22 16 0.30
23 14 0.26
24 12 0.22
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
AATTTTAAAAAATATATAATAATA
Found at i:101554706 original size:22 final size:25
Alignment explanation
Indices: 101554671--101554723 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
101554661 TTTTCAAAGA
101554671 ATATAATAATAAAT-TTT-AAAAAT
1 ATATAATAATAAATGTTTAAAAAAT
101554694 ATATAA-AATAAATGTTTAAAAAAT
1 ATATAATAATAAATGTTTAAAAAAT
101554718 ATATAA
1 ATATAA
101554724 CAAATTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 7 0.25
23 9 0.32
24 12 0.43
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
ATATAATAATAAATGTTTAAAAAAT
Found at i:101554769 original size:25 final size:24
Alignment explanation
Indices: 101554736--101554784 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
101554726 AATTAAAATT
*
101554736 TTATATTAATATTAAATAAATATAA
1 TTATATTAATATGAAATAAA-ATAA
101554761 TTATATTAATATGAAATAAAATAA
1 TTATATTAATATGAAATAAAATAA
101554785 AATCTGGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
TTATATTAATATGAAATAAAATAA
Found at i:101555383 original size:14 final size:14
Alignment explanation
Indices: 101555364--101555391 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101555354 ATTATAATTT
101555364 TAAAAATATTATTA
1 TAAAAATATTATTA
101555378 TAAAAATATTATTA
1 TAAAAATATTATTA
101555392 ATTCTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAAAATATTATTA
Found at i:101555390 original size:17 final size:18
Alignment explanation
Indices: 101555370--101555403 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
101555360 ATTTTAAAAA
101555370 TATT-ATTATAAAAATAT
1 TATTAATTATAAAAATAT
*
101555387 TATTAATTCTAAAAATA
1 TATTAATTATAAAAATA
101555404 CTTTTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TATTAATTATAAAAATAT
Found at i:101555942 original size:14 final size:14
Alignment explanation
Indices: 101555925--101555951 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101555915 ATTTGTGTGT
101555925 TTTTATTTTATTTA
1 TTTTATTTTATTTA
101555939 TTTTATTTTATTT
1 TTTTATTTTATTT
101555952 TTTCACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:101560387 original size:5 final size:5
Alignment explanation
Indices: 101560377--101560408 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
101560367 TTATGTGTTC
101560377 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
101560409 TCACAATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:101560391 original size:9 final size:9
Alignment explanation
Indices: 101560377--101560407 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
101560367 TTATGTGTTC
101560377 TTTATTTTA
1 TTTATTTTA
101560386 TTTATTTTA
1 TTTATTTTA
101560395 TTTTATTTTA
1 -TTTATTTTA
101560405 TTT
1 TTT
101560408 TTCACAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:101564685 original size:66 final size:66
Alignment explanation
Indices: 101564614--101564741 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
101564604 ATTCGTATGG
* * * * *
101564614 CCGAAGAGAACCAACGACCTAGATGCAAATAGGCAGAAAATAATTTATCTCTCAACGGTCAGATG
1 CCGAAGAGAACCAACGACCCAGATGCAAACAAGCAAAAAATAATTCATCTCTCAACGGTCAGATG
101564679 C
66 C
* *
101564680 CCGAAGAGAACCAACGACCCAGATGCAAGCAAGCAAAAAATGATTCATCTCTCAACGGTCAG
1 CCGAAGAGAACCAACGACCCAGATGCAAACAAGCAAAAAATAATTCATCTCTCAACGGTCAG
101564742 TACGCACCCA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.40, C:0.25, G:0.20, T:0.16
Consensus pattern (66 bp):
CCGAAGAGAACCAACGACCCAGATGCAAACAAGCAAAAAATAATTCATCTCTCAACGGTCAGATG
C
Found at i:101569233 original size:25 final size:25
Alignment explanation
Indices: 101569199--101569249 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
101569189 ACCAACATGC
101569199 TAGTTTACTTGGCGATTATCCTTGA
1 TAGTTTACTTGGCGATTATCCTTGA
* *
101569224 TAGTTTACTTGGTGATTATCTTTGA
1 TAGTTTACTTGGCGATTATCCTTGA
101569249 T
1 T
101569250 CCACGATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.49
Consensus pattern (25 bp):
TAGTTTACTTGGCGATTATCCTTGA
Found at i:101570541 original size:6 final size:6
Alignment explanation
Indices: 101570530--101570561 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
101570520 AACCATTTTT
101570530 AGAAAA AGAAAA A-AAAA AGAAAA AGAAAA AGA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGA
101570562 GATAGTGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:101570548 original size:11 final size:12
Alignment explanation
Indices: 101570530--101570561 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
101570520 AACCATTTTT
101570530 AGAAAAAGAAAA
1 AGAAAAAGAAAA
101570542 A-AAAAAGAAAA
1 AGAAAAAGAAAA
101570553 AGAAAAAGA
1 AGAAAAAGA
101570562 GATAGTGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAAAA
Found at i:101572761 original size:25 final size:25
Alignment explanation
Indices: 101572703--101572761 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
101572693 TAATAACATT
* * *
101572703 ATAAAAATAAAAATATCAAATTATG
1 ATAAAAATTAAAATATAAAATTATA
101572728 ATAAAAATTAAAATATAAAGATTA-A
1 ATAAAAATTAAAATATAAA-ATTATA
101572753 ATAAAAATT
1 ATAAAAATT
101572762 TAAACATGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 26 0.87
26 4 0.13
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (25 bp):
ATAAAAATTAAAATATAAAATTATA
Found at i:101574914 original size:7 final size:7
Alignment explanation
Indices: 101574875--101574912 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
101574865 TTTAATTTGG
101574875 ATTTT-T
1 ATTTTCT
101574881 ATTTTCT
1 ATTTTCT
101574888 ATTTTCT
1 ATTTTCT
101574895 ATTTTCT
1 ATTTTCT
101574902 ATTTT-T
1 ATTTTCT
101574908 ATTTT
1 ATTTT
101574913 TTTCTTCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 11 0.35
7 20 0.65
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (7 bp):
ATTTTCT
Done.