Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 330 of 410
Found at i:102437176 original size:25 final size:25
Alignment explanation
Indices: 102437148--102437199 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
102437138 TTTGGCTTGA
**
102437148 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
102437173 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
102437198 CA
1 CA
102437200 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:102445362 original size:28 final size:28
Alignment explanation
Indices: 102445329--102445389 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
102445319 GAAATATCAG
102445329 AATGTTTTAAAGATTACACAGATCATGC
1 AATGTTTTAAAGATTACACAGATCATGC
102445357 AATGTTTTAAAGATTACACAGATCATGC
1 AATGTTTTAAAGATTACACAGATCATGC
102445385 AATGT
1 AATGT
102445390 CACAGATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (28 bp):
AATGTTTTAAAGATTACACAGATCATGC
Found at i:102451788 original size:27 final size:27
Alignment explanation
Indices: 102451751--102451917 Score: 230
Period size: 27 Copynumber: 6.2 Consensus size: 27
102451741 AGCATGGCTG
* * *
102451751 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
102451777 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
102451805 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
102451832 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
102451859 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
102451886 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
102451913 CCAGA
1 CCAGA
102451918 ATGCTTCCTC
Statistics
Matches: 131, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
26 5 0.04
27 109 0.83
28 17 0.13
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:102451815 original size:54 final size:54
Alignment explanation
Indices: 102451751--102451918 Score: 257
Period size: 54 Copynumber: 3.1 Consensus size: 54
102451741 AGCATGGCTG
* * * *
102451751 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
102451805 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
* * *
102451859 CCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
102451913 CCAGAA
1 CCAGAA
102451919 TGCTTCCTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 87 0.83
55 18 0.17
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
Found at i:102453570 original size:26 final size:26
Alignment explanation
Indices: 102453534--102453643 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
102453524 CATGAAATTC
*
102453534 TTATCATGAAACATTTACCTAGCCCA
1 TTATCATGAAACATTTACCTAACCCA
102453560 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
102453586 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
102453612 TTAT-ATTGGAACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
102453638 TTATCA
1 TTATCA
102453644 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.01
26 77 0.97
27 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:102457608 original size:27 final size:27
Alignment explanation
Indices: 102457571--102457737 Score: 221
Period size: 27 Copynumber: 6.2 Consensus size: 27
102457561 AGCATGGCTG
* * *
102457571 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
102457597 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
102457625 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
102457652 CCAGATTAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
102457679 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
102457706 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
102457733 CCAGA
1 CCAGA
102457738 ACGCTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
26 5 0.04
27 107 0.83
28 17 0.13
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:102457630 original size:54 final size:54
Alignment explanation
Indices: 102457571--102457739 Score: 250
Period size: 54 Copynumber: 3.1 Consensus size: 54
102457561 AGCATGGCTG
* * * *
102457571 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
*
102457625 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
* * *
102457679 CCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
102457733 CCAGAAC
1 CCAGAAC
102457740 GCTTCCTCCA
Statistics
Matches: 104, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
54 86 0.83
55 18 0.17
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
Found at i:102457874 original size:26 final size:25
Alignment explanation
Indices: 102457835--102457887 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
102457825 TTAGTCAAAA
* *
102457835 TTAACCCTAGGGGTATAACGGTAAT
1 TTAACCCTAAGGGTATAACAGTAAT
102457860 TTAACACCTAAGGGTATAACAGTAAT
1 TTAAC-CCTAAGGGTATAACAGTAAT
102457886 TT
1 TT
102457888 TCCATACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (25 bp):
TTAACCCTAAGGGTATAACAGTAAT
Found at i:102459393 original size:26 final size:26
Alignment explanation
Indices: 102459357--102459466 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
102459347 CATGAAATTC
102459357 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
102459383 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
102459409 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
102459435 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
102459461 TTATCA
1 TTATCA
102459467 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:102460591 original size:16 final size:16
Alignment explanation
Indices: 102460570--102460603 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102460560 CTATGCATGC
*
102460570 AAAATATAAAAGACAT
1 AAAATACAAAAGACAT
*
102460586 AAAATACAAAATACAT
1 AAAATACAAAAGACAT
102460602 AA
1 AA
102460604 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.18
Consensus pattern (16 bp):
AAAATACAAAAGACAT
Found at i:102464711 original size:17 final size:17
Alignment explanation
Indices: 102464684--102464716 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
102464674 TGCATTTTTC
102464684 TGAATTGTG-AATAAAG
1 TGAATTGTGAAATAAAG
102464700 TGAATGTGTGAAATAAA
1 TGAAT-TGTGAAATAAA
102464717 ATTGTAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.30
Consensus pattern (17 bp):
TGAATTGTGAAATAAAG
Found at i:102470657 original size:48 final size:47
Alignment explanation
Indices: 102470597--102470695 Score: 171
Period size: 48 Copynumber: 2.1 Consensus size: 47
102470587 TTAGCTCTCG
*
102470597 ATATAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATAATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
*
102470644 ATATATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATA-ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
102470692 ATAT
1 ATAT
102470696 CCGGACTTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 5 0.10
48 44 0.90
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (47 bp):
ATATAATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAAT
Found at i:102471235 original size:15 final size:15
Alignment explanation
Indices: 102471212--102471249 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
102471202 CGAAAGCTTA
102471212 CTCTGTTTCTTATCT
1 CTCTGTTTCTTATCT
*
102471227 CTTTGTTTCTTATCT
1 CTCTGTTTCTTATCT
102471242 CTCTGTTT
1 CTCTGTTT
102471250 TATAGATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.05, C:0.24, G:0.08, T:0.63
Consensus pattern (15 bp):
CTCTGTTTCTTATCT
Found at i:102474928 original size:26 final size:26
Alignment explanation
Indices: 102474899--102474982 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
102474889 TGATACAAAT
102474899 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102474925 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
102474951 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102474977 TGATAA
1 TGATAA
102474983 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:102476699 original size:27 final size:26
Alignment explanation
Indices: 102476595--102476709 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
102476585 TGGAGGAAGC
* *
102476595 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
102476622 GATCTGGTGGCTTTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
102476649 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
102476676 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
102476703 GTTCTGG
1 GTTCTGG
102476710 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 55 0.71
28 17 0.22
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:102476702 original size:54 final size:54
Alignment explanation
Indices: 102476595--102476709 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
102476585 TGGAGGAAGC
* *
102476595 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTTTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
102476649 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
102476703 GTTCTGG
1 GTTCTGG
102476710 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:102480926 original size:26 final size:26
Alignment explanation
Indices: 102480890--102480999 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
102480880 TAGTACAAAT
102480890 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102480916 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
102480942 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
102480968 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102480994 TGATAA
1 TGATAA
102481000 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:102482656 original size:27 final size:27
Alignment explanation
Indices: 102482618--102482701 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
102482608 AAGCGTTCTA
*
102482618 GTGGCTATGCCACAAATATCTGATCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* *
102482645 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* *
102482672 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAAATATCTG-ATCTG
102482700 GT
1 GT
102482702 AACTCTATCA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 43 0.88
28 6 0.12
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATCTGATCTG
Found at i:102482716 original size:27 final size:26
Alignment explanation
Indices: 102482634--102482726 Score: 87
Period size: 27 Copynumber: 3.5 Consensus size: 26
102482624 ATGCCACAAA
* ** *
102482634 TATCTGATCTGGTGGCTCTGCCACAT
1 TATCTGTTCTGGTAACTCTACCACAT
** *
102482660 ATATCTGTTCTGGTGGCTCTGCCACGAT
1 -TATCTGTTCTGGTAACTCTACCAC-AT
*
102482688 TATCTGTATCTGGTAACTCTATCACAT
1 TATCTGT-TCTGGTAACTCTACCACAT
102482715 TATCTGTTCTGG
1 TATCTGTTCTGG
102482727 CAGCCATGCT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.08
27 39 0.66
28 15 0.25
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (26 bp):
TATCTGTTCTGGTAACTCTACCACAT
Found at i:102482719 original size:54 final size:54
Alignment explanation
Indices: 102482612--102482726 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
102482602 TGGAGGAAGC
* ** *
102482612 GTTCTAGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTAACTCTACCACATATATCT
* * * *
102482666 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTAACTCTATCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTAACTCTACCACATATATCT
102482720 GTTCTGG
1 GTTCTGG
102482727 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 36 0.69
55 16 0.31
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTAACTCTACCACATATATCT
Found at i:102486175 original size:2 final size:2
Alignment explanation
Indices: 102486168--102486200 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
102486158 AATTTACATG
102486168 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
102486201 TAATACACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102487428 original size:131 final size:130
Alignment explanation
Indices: 102487189--102487460 Score: 298
Period size: 131 Copynumber: 2.1 Consensus size: 130
102487179 GAATTCTTTA
* * * *
102487189 AAACAAAGGCGATATTCGATTCTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGATTGCAAT
1 AAACGAAGGCGATATTCGATTCTTGGCAACTCGCGGAATCGTGCCCTAACGTGCTGGATTGCAAT
** * * * ** * *
102487254 TTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTTGAATTTCACCCATGTCTTTTGAAAATCCCT
66 TTCTCGTTCACTCAAAATAATCAAAGATCCCTTTAAAATTTCACCCATGT-TTCTAAAAATCCCT
102487319 T
130 T
* * *
102487320 AAACGAAGGCGATATTTGATAT-TTGGTAACTCGCGGAATCGTGCCCTAACGTGCTGGGTTGCAA
1 AAACGAAGGCGATATTCGAT-TCTTGGCAACTCGCGGAATCGTGCCCTAACGTGCTGGATTGCAA
* * *
102487384 TTTCGT-GTTCACTTAAAATAATCAAATAT-CCTTTCAAAATTTCACTCATGTTTCTAAAAATCC
65 TTTC-TCGTTCACTCAAAATAATCAAAGATCCCTTT-AAAATTTCACCCATGTTTCTAAAAATCC
*
102487447 TTT
128 CTT
102487450 AAGACGAAGGC
1 AA-ACGAAGGC
102487461 AAAACTCGGT
Statistics
Matches: 117, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
130 19 0.16
131 96 0.82
132 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (130 bp):
AAACGAAGGCGATATTCGATTCTTGGCAACTCGCGGAATCGTGCCCTAACGTGCTGGATTGCAAT
TTCTCGTTCACTCAAAATAATCAAAGATCCCTTTAAAATTTCACCCATGTTTCTAAAAATCCCTT
Found at i:102487542 original size:130 final size:130
Alignment explanation
Indices: 102487354--102487691 Score: 301
Period size: 131 Copynumber: 2.6 Consensus size: 130
102487344 GGTAACTCGC
* * * ** * *
102487354 GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGT-GTTCACTT-AAAATAATCAAATATCCTT
1 GGAATCATGCCCTATCGTGCTGGGTTG-TATTTC-TCGTT-TGTTCAAAACAATCGAATATCCTT
* * * *
102487417 TCAAAATTTCACTCATGTTT-CTAAAAATCCTTT-AAGACGAAGGCAAAACTCGGTGTTCGACAA
63 TCAGAATTTCACTCATGTTTACTAAAAA-CCTTTCAAAACGAAAGCAAAACTCGATGTTCGACAA
102487480 TTCG
127 TTCG
102487484 GGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTT
1 GGAATCATGCCCTATCGTGCTGGGTTGT-ATTTCTCGTTTGTTCAAAACAATCGAATA-TCCTTT
** * * * *** * * *
102487549 -AGGTTTTCATTCATGTTTATTAAAAACCTTTCAAAACGAAAGCGATGTTCGATGTTTGGCGATT
64 CAGAATTTCACTCATGTTTACTAAAAACCTTTCAAAACGAAAGCAAAACTCGATGTTCGACAATT
*
102487613 TG
129 CG
* * * * * *
102487615 AGAATCGA-GCCCTATCGTGCTGGGTTGCTCTTTTTCATTTGTTCAAAACAATCGAAGATCTTTT
1 GGAATC-ATGCCCTATCGTGCTGGGTTG-TATTTCTCGTTTGTTCAAAACAATCGAATATCCTTT
102487679 CAGAATTTCACTC
64 CAGAATTTCACTC
102487692 GTATTTTCTA
Statistics
Matches: 167, Mismatches: 32, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
129 3 0.02
130 69 0.41
131 93 0.56
132 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (130 bp):
GGAATCATGCCCTATCGTGCTGGGTTGTATTTCTCGTTTGTTCAAAACAATCGAATATCCTTTCA
GAATTTCACTCATGTTTACTAAAAACCTTTCAAAACGAAAGCAAAACTCGATGTTCGACAATTCG
Found at i:102499184 original size:64 final size:64
Alignment explanation
Indices: 102499075--102499195 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 64
102499065 CATAGTAATT
** *
102499075 CATTTAGTTAGAAGCACTTGACTCATTTCGATCATAGCATTCTAATTATTTGACATAGACACCA
1 CATTTAGTTAGAAGCACTTGACTCATTTCGATCATAGCACCCTAATTAGTTGACATAGACACCA
** * * * *
102499139 CATTTAGTTAGGGGCATTTGATTCATTTTGATCAT-GACACCCTAATTAGTTGGCATA
1 CATTTAGTTAGAAGCACTTGACTCATTTCGATCATAG-CACCCTAATTAGTTGACATA
102499196 CATAGATACA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
63 1 0.02
64 46 0.98
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (64 bp):
CATTTAGTTAGAAGCACTTGACTCATTTCGATCATAGCACCCTAATTAGTTGACATAGACACCA
Found at i:102499481 original size:132 final size:132
Alignment explanation
Indices: 102499274--102499785 Score: 801
Period size: 132 Copynumber: 3.9 Consensus size: 132
102499264 TACAGATATC
**
102499274 GTTTCCCTGAAGTTGCAGTGAAGTAGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGCAGCA
1 GTTTCCCTGAAGTTGCAGTGAAGCGGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGCAGCA
* *
102499339 AATCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAATAGGCTGAAATTTTAGATC
66 AAGCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATC
102499404 TT
131 TT
* *
102499406 GTTTCCCTGAAGTTGCAGTGAAGCGGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGTAGTA
1 GTTTCCCTGAAGTTGCAGTGAAGCGGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGCAGCA
* *
102499471 AAGCAAATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTTTAGATC
66 AAGCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATC
102499536 TT
131 TT
* * *
102499538 GTTTCCCTGAAGTTGCAGTGAAGAGGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGCG
1 GTTTCCCTGAAGTTGCAGTGAAGCGGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGCAGCA
102499603 AAGCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATC
66 AAGCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATC
*
102499668 TC
131 TT
* * * * * * * *
102499670 GTTTCCCTGAAGTTGCAATGGAA-CGGATCAAAGACGGTGGATCTAGTCTTCCTGAAGTTGCAGT
1 GTTTCCCTGAAGTTGCAGT-GAAGCGGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGCAGC
* **
102499734 GAAGCAGATTTACACCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
65 AAAGCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
102499786 CGAAGATTGC
Statistics
Matches: 353, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
132 350 0.99
133 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (132 bp):
GTTTCCCTGAAGTTGCAGTGAAGCGGATCGAAGACGGCGAATCTTGGCTTCCTAAAGTTGCAGCA
AAGCAGATTTAGGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGATC
TT
Found at i:102501666 original size:39 final size:39
Alignment explanation
Indices: 102501623--102501702 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
102501613 ATGTTAATAT
*
102501623 CATTTCATACACCTAATGGTTTTTTTGGTTTCATCCATG
1 CATTTCATACACCTAATGATTTTTTTGGTTTCATCCATG
102501662 CATTTCATACACCTAATGATTTTTTTGGTTTCATCCATG
1 CATTTCATACACCTAATGATTTTTTTGGTTTCATCCATG
102501701 CA
1 CA
102501703 CTTTAACCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (39 bp):
CATTTCATACACCTAATGATTTTTTTGGTTTCATCCATG
Found at i:102501882 original size:23 final size:23
Alignment explanation
Indices: 102501855--102501916 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
102501845 TTAAATTTAC
102501855 ATGTATATATATATATATTCTTT
1 ATGTATATATATATATATTCTTT
* *
102501878 ATGTATATGTA-AGCATATTCTTT
1 ATGTATATATATA-TATATTCTTT
102501901 ATGTATATA-ATATATA
1 ATGTATATATATATATA
102501917 ATAAAATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 5 0.15
23 28 0.85
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (23 bp):
ATGTATATATATATATATTCTTT
Found at i:102503231 original size:131 final size:130
Alignment explanation
Indices: 102502983--102503264 Score: 332
Period size: 131 Copynumber: 2.1 Consensus size: 130
102502973 AATTATTAAG
* * * * *
102502983 AATTCTTTAAAACAAAGGCGATATTCGATTCTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTG
1 AATTCCTT-AAACGAAGGCGATATTCGATTCTTGGCAACTCGCGGAATCGTGCCCTAACGTGCTG
* ** * * * * * *
102503048 GGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTTTG
65 GGTTGCAATTTCGCGTTCACTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCT-
102503113 AA
129 AA
* *
102503115 AATTCCTTAAACGAAGGCGATATTTGATAT-TTGGTAACTCGCGGAATCGTGCCCTAACGTGCTG
1 AATTCCTTAAACGAAGGCGATATTCGAT-TCTTGGCAACTCGCGGAATCGTGCCCTAACGTGCTG
* * *
102503179 GGTTGCAATTTCGCGTTCACTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATGTCTTCTA
65 GGTTGCAATTTCGCGTTCACTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTA
102503244 A
130 A
*
102503245 AAATCCTTTAAGACGAAGGC
1 AATTCC-TTAA-ACGAAGGC
102503265 AATACTCGGT
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
130 7 0.06
131 104 0.82
132 16 0.13
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (130 bp):
AATTCCTTAAACGAAGGCGATATTCGATTCTTGGCAACTCGCGGAATCGTGCCCTAACGTGCTGG
GTTGCAATTTCGCGTTCACTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAA
Found at i:102503292 original size:131 final size:131
Alignment explanation
Indices: 102503026--102503314 Score: 303
Period size: 131 Copynumber: 2.2 Consensus size: 131
102503016 GGCAATTCGT
* * ** * * * *
102503026 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTT
1 GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGCGTTCACTCAAAATAATCAAAGATCCCTTC
* * * * * * * **
102503091 AGAATTTCACCCATGTCTTTTGAAAATTCCTTAAACGAAGGCGATATTTGATATTTGGTAACTCG
66 AAAATTTCACCCATGTCTTCTGAAAAATCCTTAAACGAAGGCAATACTCGATATTCGACAACTCG
102503156 C
131 C
* *
102503157 GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGCGTTCACTTAAAATAATCAAATATCCCTTC
1 GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGCGTTCACTCAAAATAATCAAAGATCCCTTC
* * * *
102503222 AAAATTTCACTCATGTCTTCT-AAAAATCCTTTAAGACGAAGGCAATACTCGGTGTTCGACAATT
66 AAAATTTCACCCATGTCTTCTGAAAAATCC-TTAA-ACGAAGGCAATACTCGATATTCGACAACT
*
102503286 TG-
129 CGC
* * *
102503288 GGAATCATGCCCTATCGTGCTCGGTTG
1 GGAATCGTGCCCTAACGTGCTGGGTTG
102503315 TGATTTCTCG
Statistics
Matches: 129, Mismatches: 27, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
130 7 0.05
131 101 0.78
132 21 0.16
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (131 bp):
GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCGCGTTCACTCAAAATAATCAAAGATCCCTTC
AAAATTTCACCCATGTCTTCTGAAAAATCCTTAAACGAAGGCAATACTCGATATTCGACAACTCG
C
Found at i:102505743 original size:9 final size:8
Alignment explanation
Indices: 102505720--102505760 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
102505710 ATAATAAAAA
102505720 TATAATTT
1 TATAATTT
102505728 TATAATTT
1 TATAATTT
102505736 TAATAA-TT
1 T-ATAATTT
*
102505744 TATATTTT
1 TATAATTT
102505752 TATAATTT
1 TATAATTT
102505760 T
1 T
102505761 TTAAAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 3 0.10
8 22 0.76
9 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATAATTT
Found at i:102505752 original size:24 final size:23
Alignment explanation
Indices: 102505692--102505760 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 23
102505682 TGTCAGAATT
**
102505692 AAATTGTATATTTTTATAATAATA
1 AAATT-TATATTTTTATAATTTTA
* *
102505716 AAA-ATATAATTTTATAATTTTA
1 AAATTTATATTTTTATAATTTTA
102505738 ATAATTTATATTTTTATAATTTT
1 A-AATTTATATTTTTATAATTTT
102505761 TTAAAAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
22 16 0.43
23 2 0.05
24 19 0.51
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (23 bp):
AAATTTATATTTTTATAATTTTA
Found at i:102513295 original size:11 final size:11
Alignment explanation
Indices: 102513281--102513328 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
102513271 GTTTTCTCCC
*
102513281 TATTTTACTAT
1 TATTTTATTAT
102513292 TATTTTATTAT
1 TATTTTATTAT
* *
102513303 TATGTTGTTAT
1 TATTTTATTAT
*
102513314 TATTTTATTTT
1 TATTTTATTAT
102513325 TATT
1 TATT
102513329 GTTTGAATAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:102513391 original size:30 final size:30
Alignment explanation
Indices: 102513357--102513419 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
102513347 ACTTATTTTA
*
102513357 TTGTTAATTTTATTATTATTTTAAAGATAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* *
102513387 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
102513417 TTG
1 TTG
102513420 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.02, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:102518362 original size:56 final size:56
Alignment explanation
Indices: 102518295--102518407 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
102518285 GCATCAATCA
102518295 ATGCCTTAGTTTCGTCTAGTTAGTGTATGGAAAT-CAGAAGATCAAAGGCCAAAATT
1 ATGCCTTAGTTTCGTCTAGTTAGTGTATGG-AATGCAGAAGATCAAAGGCCAAAATT
102518351 ATGCCTTAGTTTCGTCTAGTTAGTGTATGGAATGCAGAAGATCAAAGGCCAAAATT
1 ATGCCTTAGTTTCGTCTAGTTAGTGTATGGAATGCAGAAGATCAAAGGCCAAAATT
102518407 A
1 A
102518408 ATTGCAGCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
55 3 0.05
56 53 0.95
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (56 bp):
ATGCCTTAGTTTCGTCTAGTTAGTGTATGGAATGCAGAAGATCAAAGGCCAAAATT
Found at i:102520254 original size:29 final size:31
Alignment explanation
Indices: 102520212--102520286 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 31
102520202 AATATCTTAG
* *
102520212 GTTACATTTTAGTCACTTATGTT-TGAAA-T
1 GTTACATTTTAGTCACTTACGTTATCAAATT
*
102520241 GTTACGTTTTAGTCACTTACGTTATCAAATT
1 GTTACATTTTAGTCACTTACGTTATCAAATT
*
102520272 GTAACATTTTAGTCA
1 GTTACATTTTAGTCA
102520287 TTAAGCCGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 21 0.54
30 4 0.10
31 14 0.36
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.45
Consensus pattern (31 bp):
GTTACATTTTAGTCACTTACGTTATCAAATT
Found at i:102535509 original size:21 final size:21
Alignment explanation
Indices: 102535485--102535524 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
102535475 TTTAATAGTT
*
102535485 AAGATTATATTTTTATTTGTA
1 AAGATTATATTTGTATTTGTA
102535506 AAGATTATATTTGTATTTG
1 AAGATTATATTTGTATTTG
102535525 AGTTTTAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (21 bp):
AAGATTATATTTGTATTTGTA
Found at i:102535598 original size:14 final size:16
Alignment explanation
Indices: 102535567--102535606 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
102535557 TTAATTTGTA
102535567 ATAATAATTTGTATATT
1 ATAAT-ATTTGTATATT
102535584 ATAATATTT-TA-ATT
1 ATAATATTTGTATATT
102535598 ATAATATTT
1 ATAATATTT
102535607 AGATTAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 12 0.52
15 2 0.09
16 4 0.17
17 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
ATAATATTTGTATATT
Found at i:102542927 original size:46 final size:46
Alignment explanation
Indices: 102542877--102543049 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
102542867 TGGTTGAGCA
102542877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
102542923 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
102542968 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
102543016 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
102543050 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:102543033 original size:93 final size:93
Alignment explanation
Indices: 102542874--102543044 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
102542864 GGATGGTTGA
* *
102542874 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
102542939 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
102542967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
102543032 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
102543045 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:102546039 original size:15 final size:15
Alignment explanation
Indices: 102546019--102546080 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
102546009 TCTTGGGTTT
102546019 CTTTATTCTGGATTC
1 CTTTATTCTGGATTC
*
102546034 CTTTATTCTGGATTT
1 CTTTATTCTGGATTC
* *
102546049 CTCTA-TCTTGGATTT
1 CTTTATTC-TGGATTC
*
102546064 CTTTATTC-GGTTTC
1 CTTTATTCTGGATTC
102546078 CTT
1 CTT
102546081 GTTATCTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.22
15 29 0.73
16 2 0.05
ACGTcount: A:0.11, C:0.19, G:0.13, T:0.56
Consensus pattern (15 bp):
CTTTATTCTGGATTC
Found at i:102549899 original size:6 final size:6
Alignment explanation
Indices: 102549888--102549912 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
102549878 TAGTTTCCAA
102549888 AAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG A
102549913 TCCATTTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:102550115 original size:25 final size:26
Alignment explanation
Indices: 102550064--102550121 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
102550054 TTTTTTCTCG
* *
102550064 AAATTTTACTAGGGGCAAAATCGTCA
1 AAATTTTACCAGGGGCAAAATCATCA
*
102550090 AAATTTTACCA-GGGTAAAATCATCA
1 AAATTTTACCAGGGGCAAAATCATCA
102550115 AAATTTT
1 AAATTTT
102550122 GTTGGGGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 19 0.66
26 10 0.34
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (26 bp):
AAATTTTACCAGGGGCAAAATCATCA
Found at i:102554040 original size:35 final size:35
Alignment explanation
Indices: 102553959--102554096 Score: 138
Period size: 35 Copynumber: 4.0 Consensus size: 35
102553949 AAACGTAGAT
102553959 TCCATACTGAGTTGTGAAACGTAGGTATGGTATTA
1 TCCATACTGAGTTGTGAAACGTAGGTATGGTATTA
* * *
102553994 ACCTTACTGAGTTGTGAAATGTAGGTATGGTATTA
1 TCCATACTGAGTTGTGAAACGTAGGTATGGTATTA
* ** * *
102554029 TCCATATTGAGTT-AAAAAC-TAAGGTATAGCATT-
1 TCCATACTGAGTTGTGAAACGT-AGGTATGGTATTA
* * *
102554062 TCCCATACCGAGTTGTGAAATGTAGGTATGATATT
1 T-CCATACTGAGTTGTGAAACGTAGGTATGGTATT
102554097 TCAATGAGGA
Statistics
Matches: 80, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
33 2 0.03
34 23 0.29
35 54 0.68
36 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (35 bp):
TCCATACTGAGTTGTGAAACGTAGGTATGGTATTA
Found at i:102556424 original size:329 final size:329
Alignment explanation
Indices: 102555826--102556487 Score: 1270
Period size: 329 Copynumber: 2.0 Consensus size: 329
102555816 ACCCTATTTA
*
102555826 TCGTTATTCTAGTATTTCCTTATACCCTTCATTGTATGCCTCATTACTGAACACCCATATTTGCT
1 TCGTTATTCTAGTATTTCCTTATACCCTTCATTGTATGCCTCATTACTAAACACCCATATTTGCT
102555891 ATCACGGATTGGCAACACCTATTGGCGTTGTAACTAAGACTTCTCTATAATTTTGGATCCCTTAC
66 ATCACGGATTGGCAACACCTATTGGCGTTGTAACTAAGACTTCTCTATAATTTTGGATCCCTTAC
*
102555956 TTTGTCCTATTAATCCACTTAGAACTCTATATGTATTTGTCGTACTATTTAGATAGTATCTTCTT
131 TTTGTCCCATTAATCCACTTAGAACTCTATATGTATTTGTCGTACTATTTAGATAGTATCTTCTT
102556021 ATGAATTAACCTATGCTTGATCCCTTTCCTGAATGGGGTCTTATTCTAGTAACCTCATTCGCGGA
196 ATGAATTAACCTATGCTTGATCCCTTTCCTGAATGGGGTCTTATTCTAGTAACCTCATTCGCGGA
* *
102556086 CTTGAATATGATACTTGGCTGACTAAATTAACACTCTCTCTTACCCGTGGTAATCCCACATTTCC
261 CTTGAATATGATACTTGGCTGACTAAATTAACACCCTCTCTTACCCCTGGTAATCCCACATTTCC
102556151 TTCC
326 TTCC
102556155 TCGTTATTCTAGTATTTCCTTATACCCTTCATTGTATGCCTCATTACTAAACACCCATATTTGCT
1 TCGTTATTCTAGTATTTCCTTATACCCTTCATTGTATGCCTCATTACTAAACACCCATATTTGCT
102556220 ATCACGGATTGGCAACACCTATTGGCGTTGTAACTAAGACTTCTCTATAATTTTGGATCCCTTAC
66 ATCACGGATTGGCAACACCTATTGGCGTTGTAACTAAGACTTCTCTATAATTTTGGATCCCTTAC
102556285 TTTGTCCCATTAATCCACTTAGAACTCTATATGTATTTGTCGTACTATTTAGATAGTATCTTCTT
131 TTTGTCCCATTAATCCACTTAGAACTCTATATGTATTTGTCGTACTATTTAGATAGTATCTTCTT
*
102556350 ATGAATTAACCTATGCTTGATCCTTTTCCTGAATGGGGTCTTATTCTAGTAACCTCATTCGCGGA
196 ATGAATTAACCTATGCTTGATCCCTTTCCTGAATGGGGTCTTATTCTAGTAACCTCATTCGCGGA
*
102556415 CTTGAATATGATACTTGGCTGACTAAATTAACACCCTCTCTTACCCCTGGTAATCCTACATTTCC
261 CTTGAATATGATACTTGGCTGACTAAATTAACACCCTCTCTTACCCCTGGTAATCCCACATTTCC
102556480 TTCC
326 TTCC
102556484 TCGT
1 TCGT
102556488 GCTATATAAC
Statistics
Matches: 327, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
329 327 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (329 bp):
TCGTTATTCTAGTATTTCCTTATACCCTTCATTGTATGCCTCATTACTAAACACCCATATTTGCT
ATCACGGATTGGCAACACCTATTGGCGTTGTAACTAAGACTTCTCTATAATTTTGGATCCCTTAC
TTTGTCCCATTAATCCACTTAGAACTCTATATGTATTTGTCGTACTATTTAGATAGTATCTTCTT
ATGAATTAACCTATGCTTGATCCCTTTCCTGAATGGGGTCTTATTCTAGTAACCTCATTCGCGGA
CTTGAATATGATACTTGGCTGACTAAATTAACACCCTCTCTTACCCCTGGTAATCCCACATTTCC
TTCC
Found at i:102557131 original size:68 final size:67
Alignment explanation
Indices: 102557017--102557158 Score: 178
Period size: 68 Copynumber: 2.1 Consensus size: 67
102557007 CCATATTGGT
* * * **
102557017 GGACTTTATTTGATGCCATAGCCCAACTATAGTCTTACACACTATGATCTGATGTTTACTATCCT
1 GGACTTTATATGATGCCATAGCCCAACTAGAGCCTTACACACTATGATCCCATGTTTACTATCCT
102557082 AGC
66 -GC
* * *
102557085 GGACTTTATATGTTGCCATAGCCCAACTAGGGCCTTACACTA-TATGATCCCATGTTTACTGTCC
1 GGACTTTATATGATGCCATAGCCCAACTAGAGCCTTACAC-ACTATGATCCCATGTTTACTATCC
*
102557149 TGG
65 TGC
102557152 GGACTTT
1 GGACTTT
102557159 TGATTCTGAG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
67 8 0.12
68 55 0.86
69 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (67 bp):
GGACTTTATATGATGCCATAGCCCAACTAGAGCCTTACACACTATGATCCCATGTTTACTATCCT
GC
Found at i:102559460 original size:43 final size:43
Alignment explanation
Indices: 102559412--102559506 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
102559402 CCCAAATATA
* * *
102559412 GTCTTACATGTTATCTC-ATATCGATACCAATGTCCTAGACATG
1 GTCTTACATGTAATCACAATA-CAATACCAATGTCCTAGACATG
* *
102559455 GTCTTACACGTAATCACAATACAATGCCAATGTCCTAGACATG
1 GTCTTACATGTAATCACAATACAATACCAATGTCCTAGACATG
102559498 GTCTTACAT
1 GTCTTACAT
102559507 ACAATCTCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 42 0.93
44 3 0.07
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (43 bp):
GTCTTACATGTAATCACAATACAATACCAATGTCCTAGACATG
Found at i:102564622 original size:46 final size:46
Alignment explanation
Indices: 102564562--102564789 Score: 368
Period size: 46 Copynumber: 5.0 Consensus size: 46
102564552 TTTGACATGA
* * * * * *
102564562 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
102564608 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
102564654 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
102564700 TGCCATGGGATCTTTCAACCATGGTCTCACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
102564746 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
102564790 AGAGCACACT
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 167 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:102567281 original size:30 final size:30
Alignment explanation
Indices: 102567214--102567281 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
102567204 CACCCTTAAA
* * *
102567214 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
102567244 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
102567273 AGTATTTAC
1 A-TATTTAC
102567282 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:102569582 original size:17 final size:18
Alignment explanation
Indices: 102569550--102569583 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102569540 TAAAACCTAT
*
102569550 TTTACTTATATTTAAATG
1 TTTAATTATATTTAAATG
102569568 TTTAATTAT-TTTAAAT
1 TTTAATTATATTTAAAT
102569584 CGAATATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAATTATATTTAAATG
Found at i:102572957 original size:45 final size:44
Alignment explanation
Indices: 102572907--102573026 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 44
102572897 GCGCCATGGT
* *
102572907 ATCTTTCAACTATGATCTTACTCATTTTTATTATGACTCCATAAC
1 ATCTTT-AACTATGATCTTACTCATTTTTATGATGACACCATAAC
* * * *
102572952 ATCTTTTAGCTATGGA-ATTACTTATTTTTATGATGACAGCATAAC
1 ATC-TTTAACTAT-GATCTTACTCATTTTTATGATGACACCATAAC
*
102572997 ATCTTTAAGCTATGGTCTTACTCATTTTTA
1 ATCTTTAA-CTATGATCTTACTCATTTTTA
102573027 GGCTTATAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
44 5 0.08
45 51 0.84
46 5 0.08
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.45
Consensus pattern (44 bp):
ATCTTTAACTATGATCTTACTCATTTTTATGATGACACCATAAC
Found at i:102576852 original size:2 final size:2
Alignment explanation
Indices: 102576839--102576880 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
102576829 TAAGACTAAC
*
102576839 CA CA CA CG CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
102576881 TATATATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.50, G:0.02, T:0.00
Consensus pattern (2 bp):
CA
Found at i:102582576 original size:15 final size:15
Alignment explanation
Indices: 102582553--102582605 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
102582543 CTAATTAAGC
*
102582553 TTAAATTTTTGTTAA
1 TTAAGTTTTTGTTAA
**
102582568 TTAAGTTTTAATTAA
1 TTAAGTTTTTGTTAA
102582583 TTAA--TTTTGATTAA
1 TTAAGTTTTTG-TTAA
102582597 TTAAGTTTT
1 TTAAGTTTT
102582606 AGTATATGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
13 3 0.10
14 8 0.27
15 16 0.53
16 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (15 bp):
TTAAGTTTTTGTTAA
Found at i:102582590 original size:14 final size:15
Alignment explanation
Indices: 102582564--102582606 Score: 70
Period size: 14 Copynumber: 2.9 Consensus size: 15
102582554 TAAATTTTTG
102582564 TTAATTAAGTTTTAA
1 TTAATTAAGTTTTAA
*
102582579 TTAATTAA-TTTTGA
1 TTAATTAAGTTTTAA
102582593 TTAATTAAGTTTTA
1 TTAATTAAGTTTTA
102582607 GTATATGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (15 bp):
TTAATTAAGTTTTAA
Found at i:102586839 original size:7 final size:7
Alignment explanation
Indices: 102586828--102586858 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
102586818 GAGATGGAAT
*
102586828 GTAATTT
1 GTAATTC
102586835 GTAATTC
1 GTAATTC
102586842 GTAATTC
1 GTAATTC
102586849 GTAATTC
1 GTAATTC
102586856 GTA
1 GTA
102586859 TTATGAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (7 bp):
GTAATTC
Found at i:102592152 original size:25 final size:27
Alignment explanation
Indices: 102592115--102592167 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
102592105 TCAAACATGC
102592115 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
102592141 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
102592167 A
1 A
102592168 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:102593675 original size:26 final size:26
Alignment explanation
Indices: 102593645--102593700 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
102593635 TGAAATGCCC
102593645 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
102593671 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
102593697 ATCA
1 ATCA
102593701 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:102595744 original size:13 final size:13
Alignment explanation
Indices: 102595726--102595750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102595716 CCAAACACAC
102595726 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
102595739 GCCCGTGTCCTT
1 GCCCGTGTCCTT
102595751 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:102598934 original size:12 final size:12
Alignment explanation
Indices: 102598900--102598934 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
102598890 AATTTTTCGT
*
102598900 GAAATTTCAAAA
1 GAAATTTCAAGA
102598912 GAAATTTCAAGA
1 GAAATTTCAAGA
102598924 GAAATTTCAAG
1 GAAATTTCAAG
102598935 GTGTATGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (12 bp):
GAAATTTCAAGA
Found at i:102605609 original size:2 final size:2
Alignment explanation
Indices: 102605602--102605635 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
102605592 GATTCGTTTA
102605602 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102605636 TCAATTGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102607221 original size:2 final size:2
Alignment explanation
Indices: 102607214--102607240 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
102607204 CGGCTTTAAT
102607214 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
102607241 GTATGTATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102608786 original size:32 final size:32
Alignment explanation
Indices: 102608740--102608800 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
102608730 TTAGATATTG
*
102608740 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATATTTCAAGCTTGTTAGATATTGAATTT
* *
102608772 ATTATATTTTAAGCTTGTTGGATATTGAA
1 ATTATATTTCAAGCTTGTTAGATATTGAA
102608801 ATGATTGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (32 bp):
ATTATATTTCAAGCTTGTTAGATATTGAATTT
Found at i:102609816 original size:22 final size:22
Alignment explanation
Indices: 102609748--102609836 Score: 92
Period size: 22 Copynumber: 4.0 Consensus size: 22
102609738 GATACTTTTA
102609748 ATGTGGTGTAATATTAGTTATGC
1 ATGTGGTGTAATATTAGTTAT-C
** *
102609771 ACT-TGG-ACAATATTGTTGTTATC
1 A-TGTGGTGTAATA-T-TAGTTATC
102609794 ATGTGGTGTAATATTAGTTATC
1 ATGTGGTGTAATATTAGTTATC
*
102609816 ATATGGTGTAATATTAGTTAT
1 ATGTGGTGTAATATTAGTTAT
102609837 GCACTTGGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
22 32 0.59
23 11 0.20
24 11 0.20
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (22 bp):
ATGTGGTGTAATATTAGTTATC
Found at i:102609896 original size:68 final size:68
Alignment explanation
Indices: 102609751--102609899 Score: 210
Period size: 68 Copynumber: 2.2 Consensus size: 68
102609741 ACTTTTAATG
* * *
102609751 TGGTGTAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATATTAGTTATC
1 TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATC
102609816 ATA
66 ATA
* * *
102609819 TGGTGTAATATTAGTTATGCACTTGGATAATGTTGTTGTTATCATGTGGTGTAATACTAATTATG
1 TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTAT-
* *
102609884 TATT
65 CATA
102609888 TGG-ATAATATTA
1 TGGTATAATATTA
102609900 TTAATTTCTA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 68 0.93
69 5 0.07
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (68 bp):
TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATC
ATA
Found at i:102610134 original size:2 final size:2
Alignment explanation
Indices: 102610127--102610161 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
102610117 AAATTTATTA
102610127 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102610162 ATAAAGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102610394 original size:15 final size:15
Alignment explanation
Indices: 102610374--102610426 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 15
102610364 CCAAAAAAAT
102610374 AAATTATTTTTCAAA
1 AAATTATTTTTCAAA
*
102610389 AAATTA-TTTTCCAA
1 AAATTATTTTTCAAA
* *
102610403 AAATTACTTTTCGAA
1 AAATTATTTTTCAAA
102610418 AAA-TATTTT
1 AAATTATTTT
102610427 ACCTGAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 18 0.53
15 16 0.47
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (15 bp):
AAATTATTTTTCAAA
Found at i:102610404 original size:14 final size:15
Alignment explanation
Indices: 102610374--102610421 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
102610364 CCAAAAAAAT
*
102610374 AAATTATTTTTCAAA
1 AAATTACTTTTCAAA
*
102610389 AAATTA-TTTTCCAA
1 AAATTACTTTTCAAA
*
102610403 AAATTACTTTTCGAA
1 AAATTACTTTTCAAA
102610418 AAAT
1 AAAT
102610422 ATTTTACCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 13 0.43
15 17 0.57
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (15 bp):
AAATTACTTTTCAAA
Found at i:102614118 original size:18 final size:18
Alignment explanation
Indices: 102614095--102614129 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
102614085 ATTCTTAAAA
102614095 TTAAAAAT-TTGAAAATTT
1 TTAAAAATATT-AAAATTT
102614113 TTAAAAATATTAAAATT
1 TTAAAAATATTAAAATT
102614130 AATTAGAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
TTAAAAATATTAAAATTT
Found at i:102614881 original size:14 final size:15
Alignment explanation
Indices: 102614864--102614892 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
102614854 GAGTATGGTA
102614864 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
102614878 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
102614893 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:102627782 original size:2 final size:2
Alignment explanation
Indices: 102627777--102627805 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
102627767 ATATTATGAA
102627777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102627806 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102627810 original size:2 final size:2
Alignment explanation
Indices: 102627805--102627829 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
102627795 ATATATATAT
102627805 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
102627830 ATACCTTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:102630609 original size:136 final size:137
Alignment explanation
Indices: 102630361--102630627 Score: 380
Period size: 136 Copynumber: 2.0 Consensus size: 137
102630351 GAGCCATAAA
* * * * *
102630361 TGGGTTTGCTCACACAAGTTGACGATCGGAATGTAGCTACACAATGCTGCTCAGATAAGCTGACT
1 TGGGTTTACTCACACAAGCTGACGATCGGAATGTAGCTACACAATACTGCTCACACAAGCTGACT
* *
102630426 AGTATCCGCAACAAATGTCGAAACTCAACCATCGGTAGGACACTCAGGACCAACACCCTG-AACA
66 AGTATCCGCAACAAATGCCGAAACTCAACCATCGGTAGAACACTCAGGACCAACACCC-GAAACA
102630490 TGGTAACT
130 TGGTAACT
* *
102630498 TGGGTTTACTCACACAAGCTGA-GGTCGGAATGTAAGCTAC-CGATACTGCTCACACAAGCTGA-
1 TGGGTTTACTCACACAAGCTGACGATCGGAATGT-AGCTACACAATACTGCTCACACAAGCTGAC
* *
102630560 TAAGTATCCGCAACAAATGCCGAACCTCAACCATCGGTAGAACATTCAGGACCAACACCCGAAAC
65 T-AGTATCCGCAACAAATGCCGAAACTCAACCATCGGTAGAACACTCAGGACCAACACCCGAAAC
102630625 ATG
129 ATG
102630628 AAAACTCTAA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
135 2 0.02
136 88 0.76
137 26 0.22
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.20
Consensus pattern (137 bp):
TGGGTTTACTCACACAAGCTGACGATCGGAATGTAGCTACACAATACTGCTCACACAAGCTGACT
AGTATCCGCAACAAATGCCGAAACTCAACCATCGGTAGAACACTCAGGACCAACACCCGAAACAT
GGTAACT
Found at i:102638141 original size:72 final size:68
Alignment explanation
Indices: 102638065--102638203 Score: 190
Period size: 72 Copynumber: 2.0 Consensus size: 68
102638055 TGATTAAATT
* *
102638065 TAATCACTTTAATATTAAATTAATATAATATTTATTTACAAGA-AAAGTATTAAATTAAATTTAA
1 TAATCACTTTAATATTAAATTAATAAAATA-ATA-TT--AAGATAAA-TATTAAATTAAATTTAA
*
102638129 TATTAAGA
61 TACTAAGA
*
102638137 TAATCACTTTAATATTAAATTAATAAAATAATATTAAGATAAATATTAAATTTAATTTAATACTA
1 TAATCACTTTAATATTAAATTAATAAAATAATATTAAGATAAATATTAAATTAAATTTAATACTA
102638202 AG
66 AG
102638204 TCTATTAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
68 26 0.42
69 3 0.05
70 2 0.03
71 2 0.03
72 29 0.47
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATAATATTAAGATAAATATTAAATTAAATTTAATACTA
AGA
Found at i:102638160 original size:20 final size:18
Alignment explanation
Indices: 102638112--102638198 Score: 63
Period size: 20 Copynumber: 4.7 Consensus size: 18
102638102 ACAAGAAAAG
102638112 TATTAAATTAA-ATTTAA
1 TATTAAATTAATATTTAA
102638129 TATTAAGA-TAATCACTTTAA
1 TATTAA-ATTAAT-A-TTTAA
**
102638149 TATTAAATTAATAAAATAA
1 TATTAAATTAAT-ATTTAA
* *
102638168 TATTAAGATAAATATTAAA
1 TATTAA-ATTAATATTTAA
*
102638187 T-TTAATTTAATA
1 TATTAAATTAATA
102638199 CTAAGTCTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
17 14 0.25
18 5 0.09
19 15 0.27
20 21 0.38
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
TATTAAATTAATATTTAA
Found at i:102639060 original size:16 final size:15
Alignment explanation
Indices: 102639026--102639069 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
102639016 AAATTTCAAT
*
102639026 TAAAATAAAGTTAAAA
1 TAAAATAAA-TAAAAA
102639042 TAAAATAAATAAAACA
1 TAAAATAAATAAAA-A
102639058 T-AAATAAATAAA
1 TAAAATAAATAAA
102639070 CATCGGCTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (15 bp):
TAAAATAAATAAAAA
Found at i:102640303 original size:40 final size:40
Alignment explanation
Indices: 102640259--102640338 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
102640249 ATATGACATG
102640259 TTATTAAATCTTATAAGTGTCTATATGGTCTTCTGAATGT
1 TTATTAAATCTTATAAGTGTCTATATGGTCTTCTGAATGT
102640299 TTATTAAATCTTATAAGTGTCTATATGGTCTTCTGAATGT
1 TTATTAAATCTTATAAGTGTCTATATGGTCTTCTGAATGT
102640339 ATATCGTGAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (40 bp):
TTATTAAATCTTATAAGTGTCTATATGGTCTTCTGAATGT
Found at i:102642440 original size:19 final size:19
Alignment explanation
Indices: 102642388--102642443 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
102642378 ATAAATATAA
*
102642388 GTTCAATATAAACTCACAT
1 GTTCAATATAAATTCACAT
** *
102642407 G-T-AA-CCAAATACACAT
1 GTTCAATATAAATTCACAT
102642423 GTTCAATATAAATTCACAT
1 GTTCAATATAAATTCACAT
102642442 GT
1 GT
102642444 AATCGAATGC
Statistics
Matches: 27, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
16 9 0.33
17 3 0.11
18 3 0.11
19 12 0.44
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (19 bp):
GTTCAATATAAATTCACAT
Found at i:102650282 original size:35 final size:35
Alignment explanation
Indices: 102650236--102650307 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
102650226 TCGTATCATA
102650236 TTCTAAAAATTGAACGATGAAGTTCCCAAATTGAT
1 TTCTAAAAATTGAACGATGAAGTTCCCAAATTGAT
*
102650271 TTCTAAAAATTGAACGATGAAGTTCCCGAATTGAT
1 TTCTAAAAATTGAACGATGAAGTTCCCAAATTGAT
102650306 TT
1 TT
102650308 GCCATTCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (35 bp):
TTCTAAAAATTGAACGATGAAGTTCCCAAATTGAT
Found at i:102652090 original size:2 final size:2
Alignment explanation
Indices: 102652077--102652151 Score: 50
Period size: 2 Copynumber: 38.5 Consensus size: 2
102652067 ACATACATAC
* * * *
102652077 AT AT AT AA AT AT AT AT AT AT AA AT A- AT AGT AT -T AG AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* *
102652118 ACC AT AT A- AT AT -T AG AT AT AT AT AT AT AT AT AT A
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102652152 ATAGTATAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
1 4 0.07
2 49 0.88
3 3 0.05
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (2 bp):
AT
Found at i:102652096 original size:14 final size:14
Alignment explanation
Indices: 102652077--102652219 Score: 65
Period size: 14 Copynumber: 10.4 Consensus size: 14
102652067 ACATACATAC
102652077 ATATATAAATATAT
1 ATATATAAATATAT
102652091 ATATATAAATA-AT
1 ATATATAAATATAT
*
102652104 AGTATTAGAAATATACCAT
1 A-TA-TATAAATAT---AT
*
102652123 ATAATATTAGATATAT
1 AT-ATA-TAAATATAT
*
102652139 ATATATATATATA-
1 ATATATAAATATAT
* *
102652152 ATAGTATAAA-AGAA
1 ATA-TATAAATATAT
* *
102652166 AAATATAACTA-AT
1 ATATATAAATATAT
*
102652179 A-ATATTAA-A-AT
1 ATATATAAATATAT
102652190 ATATAT-AATA-AT
1 ATATATAAATATAT
102652202 ATATATAAA-ATAT
1 ATATATAAATATAT
102652215 A-ATAT
1 ATATAT
102652220 TAAAAACTTA
Statistics
Matches: 103, Mismatches: 11, Indels: 32
0.71 0.08 0.22
Matches are distributed among these distances:
11 6 0.06
12 23 0.22
13 20 0.19
14 28 0.27
15 10 0.10
16 4 0.04
18 3 0.03
19 9 0.09
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.37
Consensus pattern (14 bp):
ATATATAAATATAT
Found at i:102652170 original size:54 final size:51
Alignment explanation
Indices: 102652085--102652209 Score: 137
Period size: 50 Copynumber: 2.4 Consensus size: 51
102652075 ACATATATAA
* * * *
102652085 ATATATATATATAAATAATAGTATTAGAAATAT-ACCATATAATATT-AGAT
1 ATATATATATATATATAATAGTATAAGAAATATAACTA-ATAATATTAAAAT
102652135 ATATATATATATATATAATAGTATAAAAGAAAAATATAACTAATAATATTAAAAT
1 ATATATATATATATATAATAGTAT--AAG--AAATATAACTAATAATATTAAAAT
102652190 ATATATAATAATATATATAA
1 ATATAT-AT-ATATATATAA
102652210 AATATAATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
50 23 0.37
52 2 0.03
54 14 0.22
55 12 0.19
56 2 0.03
57 10 0.16
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (51 bp):
ATATATATATATATATAATAGTATAAGAAATATAACTAATAATATTAAAAT
Found at i:102652188 original size:20 final size:20
Alignment explanation
Indices: 102652165--102652203 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
102652155 GTATAAAAGA
102652165 AAAATATA-ACTAATAATATT
1 AAAATATATA-TAATAATATT
102652185 AAAATATATATAATAATAT
1 AAAATATATATAATAATAT
102652204 ATATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:102652219 original size:12 final size:12
Alignment explanation
Indices: 102652176--102652224 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
102652166 AAATATAACT
102652176 AATA-ATATTAA
1 AATATATATTAA
102652187 AATATATA-TAA
1 AATATATATTAA
102652198 TAATATATA-TAA
1 -AATATATATTAA
102652210 AATATAATATTAA
1 AATAT-ATATTAA
102652223 AA
1 AA
102652225 ACTTATATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 12 0.35
12 17 0.50
13 5 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATTAA
Found at i:102652225 original size:14 final size:11
Alignment explanation
Indices: 102652077--102652215 Score: 57
Period size: 12 Copynumber: 11.3 Consensus size: 11
102652067 ACATACATAC
102652077 ATATATAAATAT
1 ATATATAAA-AT
102652089 ATATATATAAAT
1 ATATATA-AAAT
102652101 AATAGTATTAGAAAT
1 -ATA-TA-TA-AAAT
*
102652116 ATACCATATAATATT
1 AT---ATATAA-AAT
* *
102652131 AGATATATATAT
1 ATATATA-AAAT
*
102652143 ATATATATAAT
1 ATATATAAAAT
*
102652154 AGTATA-AAAGAA
1 A-TATATAAA-AT
*
102652166 AAATATAACTAAT
1 ATATATAA--AAT
102652179 A-ATATTAAAAT
1 ATATA-TAAAAT
102652190 ATATATAATAAT
1 ATATATAA-AAT
102652202 ATATATAAAAT
1 ATATATAAAAT
102652213 ATA
1 ATA
102652216 ATATTAAAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 35
0.68 0.08 0.24
Matches are distributed among these distances:
11 21 0.21
12 46 0.47
13 11 0.11
14 6 0.06
15 11 0.11
16 2 0.02
17 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (11 bp):
ATATATAAAAT
Found at i:102652522 original size:21 final size:23
Alignment explanation
Indices: 102652498--102652545 Score: 73
Period size: 21 Copynumber: 2.1 Consensus size: 23
102652488 AATAATACTT
102652498 TAAAAATAAT-TAAT-ATATTAA
1 TAAAAATAATATAATAATATTAA
102652519 TAAAAATAATAGTAATAATATTAA
1 TAAAAATAATA-TAATAATATTAA
102652543 TAA
1 TAA
102652546 TATGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
23 4 0.17
24 10 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAAATAATATAATAATATTAA
Found at i:102652547 original size:21 final size:21
Alignment explanation
Indices: 102652484--102652547 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
102652474 TAATCATTAG
*
102652484 TAGTAATAATACTTTAAAAATAA
1 TAGTAATAATA--TTAATAATAA
102652507 T--TAAT-ATATTAATAAAAATAA
1 TAGTAATAATATTAAT---AATAA
102652528 TAGTAATAATATTAATAATA
1 TAGTAATAATATTAATAATA
102652548 TGTAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
18 4 0.12
20 3 0.09
21 14 0.41
23 5 0.15
24 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (21 bp):
TAGTAATAATATTAATAATAA
Found at i:102654322 original size:74 final size:74
Alignment explanation
Indices: 102654147--102655385 Score: 1426
Period size: 74 Copynumber: 16.6 Consensus size: 74
102654137 GCTCAACTCA
* * *** *
102654147 CTCAGCGTGTCCTGAGGCTCAATTCTCCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA-AC--AGA
*
102654212 AATTGACAA-TAC
63 AATT-AAAATTAC
* * * *
102654224 CTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
*
102654289 TGAAATTAC
66 TAAAATTAC
* * ** *
102654298 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGGA-AATAGAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GACAACAGAAA
102654362 TTAAAATTAC
65 TTAAAATTAC
* ** * *
102654372 CTCAGCGTATCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGAAAATAGAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAACAGAAA
102654437 TTAAAATTAC
65 TTAAAATTAC
* * *** *
102654447 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA-AC-AGAA
*
102654512 ATTGACAA-TAC
64 ATT-AAAATTAC
* * * * *
102654523 CTCAGCATATCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAACAGAAA
*
102654588 TTGAAATTAC
65 TTAAAATTAC
* * ** * *
102654598 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
102654663 TAAAATTAC
66 TAAAATTAC
* ** * *
102654672 CTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGAAAATAGAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAACAGAAA
102654737 TTAAAATTAC
65 TTAAAATTAC
* * *** *
102654747 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA-AC-AGAA
*
102654812 ATTGACAA-TAC
64 ATT-AAAATTAC
* * * *
102654823 CTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAACAGAAA
*
102654888 TTGAAATTAC
65 TTAAAATTAC
* * ** * *
102654898 CTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
102654963 TAAAATTAC
66 TAAAATTAC
* ** * *
102654972 CTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
102655037 TAAAATTAC
66 TAAAATTAC
* * *** *
102655046 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA-AC-AGAA
*
102655111 ATTGACAA-TAC
64 ATT-AAAATTAC
* * * *
102655122 CTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGACAACAGAAA
*
102655187 TTGAAATTAC
65 TTAAAATTAC
* * * ** * *
102655197 CTCAACTTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
102655262 TAAAATTAC
66 TAAAATTAC
* ** * *
102655271 CTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
102655336 TAAAATTAC
66 TAAAATTAC
*
102655345 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
102655386 ATAGAAATAA
Statistics
Matches: 1011, Mismatches: 131, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
73 2 0.00
74 485 0.48
75 288 0.28
76 154 0.15
77 82 0.08
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (74 bp):
CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
TAAAATTAC
Found at i:102655108 original size:299 final size:300
Alignment explanation
Indices: 102654147--102655387 Score: 2371
Period size: 300 Copynumber: 4.1 Consensus size: 300
102654137 GCTCAACTCA
* * * *
102654147 CTCAGCGTGTCCTGAGGCTCAATTCTCCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATAC-AAAA
102654212 AATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTT
65 AATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
102654276 TGACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
130 TGACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* * *
102654341 TGATTTTTTTGGAAATAGAAATTAAAATTACCTCAGCGTATCCTGAGGCTCAACTCATTTCTCGC
195 TGATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGC
102654406 AATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
260 AATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
102654447 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
*
102654512 ATTGACAATACCTCAGCATATCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
66 ATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
102654577 GACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
131 GACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
102654642 GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
196 GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
102654707 ATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
261 ATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
102654747 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
102654812 ATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
66 ATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
102654877 GACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
131 GACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
102654942 GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
196 GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
102655007 ATATGAGTTGA-TTTTTTTGAAAATAGAAATTAAAATTAC
261 ATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
102655046 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
1 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
102655111 ATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
66 ATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
*
102655176 GACAACAGAAATTGAAATTACCTCAACTTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
131 GACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
102655241 GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
196 GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
102655306 ATATGAGTTGA-TTTTTTTGAAAATAGAAATTAAAATTAC
261 ATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
102655345 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAAT
1 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAAT
102655388 AGAAATAACA
Statistics
Matches: 930, Mismatches: 10, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
299 430 0.46
300 500 0.54
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (300 bp):
CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAACATACAAAAA
ATTGACAATACCTCAGCATGTCTTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTT
GACAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GATTTTTTTGAAAATAGAAATTAAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGATTTTTTTTGAAAATAGAAATTAAAATTAC
Found at i:102667092 original size:66 final size:66
Alignment explanation
Indices: 102666970--102667099 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
102666960 TCTGTGTACG
* * * *
102666970 TCAAATAACTAGGATGTTATGATCGAGATGAATCAAGTGCTCCTAGCTAAACGTGTTATGAATGG
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
102667035 A
66 A
* * * * *
102667036 TCAAATAACTAGGATGCTATGATTGAAATGAATCAAATGCTCTTAATTAGATGTGTTATGAATG
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATG
102667100 ATGTATGAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (66 bp):
TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
A
Found at i:102688413 original size:26 final size:26
Alignment explanation
Indices: 102688384--102688437 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
102688374 TCAAACATGC
102688384 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGT-AATTTAACACCTAGGGGT
* **
102688410 ATTTTGGTAATTTTGCACCTAGGGGT
1 ATTTAGGTAATTTAACACCTAGGGGT
102688436 AT
1 AT
102688438 AACAGAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (26 bp):
ATTTAGGTAATTTAACACCTAGGGGT
Found at i:102688475 original size:28 final size:26
Alignment explanation
Indices: 102688403--102688476 Score: 67
Period size: 28 Copynumber: 2.8 Consensus size: 26
102688393 AATTTAACCC
* * * *
102688403 TAGGGGTATTTTGGTAATTTTGCACC
1 TAGGGGTATTATAGTAATTTTCCACA
* * *
102688429 TAGGGGTATAACAGAAATTTTCCATACA
1 TAGGGGTATTATAGTAATTTTCC--ACA
102688457 TAGGGGTATTATAGTAATTT
1 TAGGGGTATTATAGTAATTT
102688477 AGCTGCTTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
26 17 0.47
28 19 0.53
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (26 bp):
TAGGGGTATTATAGTAATTTTCCACA
Found at i:102689961 original size:26 final size:26
Alignment explanation
Indices: 102689925--102690060 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
102689915 CATGATATTC
102689925 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
102689951 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
102689977 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
102690003 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
102690029 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
102690055 TTATCA
1 TTATCA
102690061 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:102698853 original size:12 final size:12
Alignment explanation
Indices: 102698838--102698970 Score: 61
Period size: 12 Copynumber: 11.2 Consensus size: 12
102698828 ACATACATAC
102698838 ATATATAAATAT
1 ATATATAAATAT
102698850 ATATATAAATAAT
1 ATATATAAAT-AT
*
102698863 AGTATTAGAAATAT
1 A-TA-TATAAATAT
*
102698877 ACCATAT-AATAT
1 A-TATATAAATAT
* *
102698889 -TAGATATATAT
1 ATATATAAATAT
102698900 ATATAT-AATAGT
1 ATATATAAATA-T
* * *
102698912 ATAAAAGAAAAAT
1 AT-ATATAAATAT
102698925 ATA-ACT-AATA-
1 ATATA-TAAATAT
102698935 ATAT-TAAA-AT
1 ATATATAAATAT
102698945 ATATAT-AATAAT
1 ATATATAAAT-AT
102698957 ATATATAAA-AT
1 ATATATAAATAT
102698968 ATA
1 ATA
102698971 ATATTAAAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 33
0.66 0.10 0.24
Matches are distributed among these distances:
9 2 0.02
10 14 0.15
11 17 0.19
12 31 0.34
13 12 0.13
14 9 0.10
15 6 0.07
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (12 bp):
ATATATAAATAT
Found at i:102698925 original size:50 final size:45
Alignment explanation
Indices: 102698840--102698971 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 45
102698830 ATACATACAT
* * *
102698840 ATATAAATATATATATAAATAATAGTAT-TAGAAATAT-ACCATATA
1 ATATTAATATATATAT-AATAATAGTATAAAGAAATATAACTA-ATA
102698885 ATATTAGATATATATATATATAATAGTATAAAAGAAAAATATAACTAATA
1 ATATTA-ATATATATATA-ATAATAGTAT-AAAG--AAATATAACTAATA
* *
102698935 ATATTAAAATATATATAATAATA-TATATA-AAATATAA
1 ATATTAATATATATATAATAATAGTATAAAGAAATATAA
102698972 TATTAAAAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
43 8 0.11
45 6 0.08
46 22 0.29
47 3 0.04
48 8 0.11
49 10 0.13
50 15 0.20
51 3 0.04
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (45 bp):
ATATTAATATATATATAATAATAGTATAAAGAAATATAACTAATA
Found at i:102698943 original size:20 final size:20
Alignment explanation
Indices: 102698920--102698958 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
102698910 GTATAAAAGA
102698920 AAAATATA-ACTAATAATATT
1 AAAATATATA-TAATAATATT
102698940 AAAATATATATAATAATAT
1 AAAATATATATAATAATAT
102698959 ATATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:102698974 original size:12 final size:12
Alignment explanation
Indices: 102698931--102698979 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
102698921 AAATATAACT
102698931 AATA-ATATTAA
1 AATATATATTAA
102698942 AATATATA-TAA
1 AATATATATTAA
102698953 TAATATATA-TAA
1 -AATATATATTAA
102698965 AATATAATATTAA
1 AATAT-ATATTAA
102698978 AA
1 AA
102698980 ACTTATATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
11 12 0.35
12 17 0.50
13 5 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATTAA
Found at i:102699276 original size:21 final size:23
Alignment explanation
Indices: 102699252--102699299 Score: 73
Period size: 21 Copynumber: 2.1 Consensus size: 23
102699242 AATAATACTT
102699252 TAAAAATAAT-TAAT-ATATTAA
1 TAAAAATAATATAATAATATTAA
102699273 TAAAAATAATAGTAATAATATTAA
1 TAAAAATAATA-TAATAATATTAA
102699297 TAA
1 TAA
102699300 TATGTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.42
23 4 0.17
24 10 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAAATAATATAATAATATTAA
Found at i:102699301 original size:21 final size:21
Alignment explanation
Indices: 102699238--102699301 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
102699228 TAATCATTAG
*
102699238 TAGTAATAATACTTTAAAAATAA
1 TAGTAATAATA--TTAATAATAA
102699261 T--TAAT-ATATTAATAAAAATAA
1 TAGTAATAATATTAAT---AATAA
102699282 TAGTAATAATATTAATAATA
1 TAGTAATAATATTAATAATA
102699302 TGTAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
18 4 0.12
20 3 0.09
21 14 0.41
23 5 0.15
24 8 0.24
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (21 bp):
TAGTAATAATATTAATAATAA
Found at i:102700927 original size:15 final size:14
Alignment explanation
Indices: 102700900--102700929 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
102700890 TAAATAAATT
102700900 ATTAAAAATAAAAA
1 ATTAAAAATAAAAA
102700914 ATTAAAATATAAAAA
1 ATTAAAA-ATAAAAA
102700929 A
1 A
102700930 GAAACATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
ATTAAAAATAAAAA
Found at i:102703327 original size:25 final size:23
Alignment explanation
Indices: 102703270--102703345 Score: 86
Period size: 20 Copynumber: 3.3 Consensus size: 23
102703260 TTGTTCTTTG
102703270 TTTTGGAAGAGGTTTTTTTTGTT
1 TTTTGGAAGAGGTTTTTTTTGTT
*
102703293 TTTT-G--GAGGTTTTTTTTATT
1 TTTTGGAAGAGGTTTTTTTTGTT
*
102703313 TTTTGGAAAGAAGGTTGTTTTTGTT
1 TTTTGG-AAG-AGGTTTTTTTTGTT
*
102703338 TCTTGGAA
1 TTTTGGAA
102703346 AGGCTAGTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 18 0.41
21 1 0.02
22 1 0.02
23 4 0.09
24 3 0.07
25 17 0.39
ACGTcount: A:0.16, C:0.01, G:0.25, T:0.58
Consensus pattern (23 bp):
TTTTGGAAGAGGTTTTTTTTGTT
Found at i:102703346 original size:25 final size:25
Alignment explanation
Indices: 102703299--102703347 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
102703289 TGTTTTTTGG
* *
102703299 AGGTTTTTTTTATTTTTTGGAAAGA
1 AGGTTGTTTTTATTTCTTGGAAAGA
*
102703324 AGGTTGTTTTTGTTTCTTGGAAAG
1 AGGTTGTTTTTATTTCTTGGAAAG
102703348 GCTAGTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (25 bp):
AGGTTGTTTTTATTTCTTGGAAAGA
Found at i:102703659 original size:3 final size:3
Alignment explanation
Indices: 102703645--102703730 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
102703635 GAGCTTCGTT
* *
102703645 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
102703689 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
102703731 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:102703683 original size:27 final size:27
Alignment explanation
Indices: 102703644--102703730 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
102703634 AGAGCTTCGT
102703644 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
102703671 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
102703696 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
102703722 -TTATATTAT
1 TTTATATTAT
102703731 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:102703705 original size:21 final size:18
Alignment explanation
Indices: 102703645--102703734 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
102703635 GAGCTTCGTT
*
102703645 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
102703665 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
102703683 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
102703704 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
102703722 TTA-TATTATATAT
1 TTATTATT-TATAT
102703735 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:102703989 original size:12 final size:12
Alignment explanation
Indices: 102703954--102703998 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
102703944 TATATTAGTG
* *
102703954 TATATTTTTATG
1 TATATATTTATA
*
102703966 TATATATATATA
1 TATATATTTATA
102703978 TATATATTTATA
1 TATATATTTATA
102703990 TATAGTATT
1 TATA-TATT
102703999 GTTTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 24 0.86
13 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (12 bp):
TATATATTTATA
Found at i:102706050 original size:6 final size:6
Alignment explanation
Indices: 102706002--102706040 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
102705992 ATTCATTCCA
102706002 TGCATT TGCATT TGCATT TGCATT TGCA-T TGCA-T TGCAT
1 TGCATT TGCATT TGCATT TGCATT TGCATT TGCATT TGCAT
102706041 CATTTGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 10 0.31
6 22 0.69
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (6 bp):
TGCATT
Found at i:102708806 original size:6 final size:6
Alignment explanation
Indices: 102708795--102708836 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
102708785 GGAGTTATAT
102708795 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
1 GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA GGCAAA
102708837 AAAAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.50, C:0.17, G:0.33, T:0.00
Consensus pattern (6 bp):
GGCAAA
Found at i:102710127 original size:66 final size:66
Alignment explanation
Indices: 102710027--102710153 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
102710017 CATTCATATA
*
102710027 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
102710092 C
66 C
*
102710093 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
102710154 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:102710402 original size:43 final size:44
Alignment explanation
Indices: 102710217--102710987 Score: 451
Period size: 43 Copynumber: 17.6 Consensus size: 44
102710207 ATTCACAAGC
* * * * *
102710217 CTTAAGCCCCTAAGCAATAAGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * *
102710262 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACA-GAT
* * * * *
102710306 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTG-CAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * *
102710348 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * *
102710391 CTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGA-T
* * *
102710434 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * * **
102710479 CTTAACCCCCTAAGCAGTAGAGAAACAGATCAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
102710522 CTTTAA-CCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGAT
* * *
102710565 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * *
102710610 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATAG-G
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * *
102710653 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACA-AGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGA-T
* * * *
102710697 CTTAAACCCCTAAGCAGTAGGGTAAGAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* ** * * **
102710742 CTTAA-CCCCTAAGCAGTAGGGAAACAGATAAAAAATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * *
102710784 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACA-AA
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGAT
* * * *
102710827 CTTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * * * *
102710873 CTTAACCCCCTAACCAGTAGGGTAACAGGTTGAA-TTTATAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * ** **
102710916 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* *
102710960 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
102710988 GCTGGAAATT
Statistics
Matches: 557, Mismatches: 125, Indels: 89
0.72 0.16 0.12
Matches are distributed among these distances:
42 46 0.08
43 220 0.39
44 142 0.25
45 142 0.25
46 7 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
Found at i:102710704 original size:263 final size:262
Alignment explanation
Indices: 102710306--102710900 Score: 975
Period size: 263 Copynumber: 2.3 Consensus size: 262
102710296 GACGAAGGGT
* * * * * * *
102710306 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
102710368 GGAAACAGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAG
66 GGAAACAGATCAAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAG
102710433 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
131 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGCAGTA
* *
102710498 GAGAAACAGATCAAAGATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
195 GAGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
102710562 AAC
260 AAC
102710565 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
102710630 GGAAACAGATCAAAGATGATAG-GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGATCAAAGATGA-AGATC-TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
*
102710694 AGCCTTAAACCCCTAAGCAGTAGGGTAAGAGGCTGAAGATTTACAGATCTTAACCCCTAAGCAGT
129 AGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGCAGT
*
102710759 AGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTAC
194 AGAGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTAC
102710824 AAAC
259 AAAC
* * *
102710828 TTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
102710893 GGTAACAG
66 GGAAACAG
102710901 GTTGAATTTA
Statistics
Matches: 313, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
259 28 0.09
260 1 0.00
261 1 0.00
262 84 0.27
263 199 0.64
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (262 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCAAAGATGAAGATCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAG
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGCAGTAG
AGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
AC
Found at i:102710933 original size:131 final size:133
Alignment explanation
Indices: 102710306--102710900 Score: 931
Period size: 131 Copynumber: 4.5 Consensus size: 133
102710296 GACGAAGGGT
* * * * * * *
102710306 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
102710368 GGAAACAGATCGAAGATGA-AGATC-TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGATCAAAGATGATAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
*
102710431 AGC
131 AAC
102710434 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
102710499 AGAAACAGATCAAAGATGAT-GGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGATCAAAGATGATAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
102710562 AAC
131 AAC
102710565 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
102710630 GGAAACAGATCAAAGATGATAG-GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGATCAAAGATGATAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
*
102710694 AGC
131 AAC
*
102710697 CTTAAACCCCTAAGCAGTAGGGTAAGAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * *
102710761 GGAAACAGATAAAAAATGAT-GGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGATCAAAGATGATAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
102710825 AAC
131 AAC
* * *
102710828 TTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
102710893 GGTAACAG
66 GGAAACAG
102710901 GTTGAATTTA
Statistics
Matches: 435, Mismatches: 23, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
128 28 0.06
129 1 0.00
130 2 0.00
131 294 0.68
132 110 0.25
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (133 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCAAAGATGATAGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
AAC
Found at i:102710964 original size:263 final size:263
Alignment explanation
Indices: 102710306--102710991 Score: 924
Period size: 263 Copynumber: 2.6 Consensus size: 263
102710296 GACGAAGGGT
* * * * * * * * *
102710306 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
* * * *
102710368 GGAAACAGATCGAAGATGA-A-GATCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGATCAAAGATGATAGGCT-TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAATGACA
102710431 AGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAG
130 AGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAG
* *
102710496 TAGAGAAACAGATCAAAGATGATGGGCTTTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTAC
195 TAGAGAAACAGATAAAAAATGATGGGCTTTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTAC
102710561 AAAC
260 AAAC
* *
102710565 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
* *
102710630 GGAAACAGATCAAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCAAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAATGACAA
*
102710695 GCCTTAAACCCCTAAGCAGTAGGGTAAGAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGCAGT
131 GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
*
102710759 AGGGAAACAGATAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTAC
196 AGAGAAACAGATAAAAAATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTAC
102710824 AAAC
260 AAAC
*
102710828 TTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
* * ** * * * * * *
102710893 GGTAACAGGTTGAA-TTTATA-GATCTTAACCCCTTAAGCAGTTGGG-AA-ATAGATCGAAGATG
66 GGAAACAGATCAAAGATGATAGGCT-TTAACCCCCTAAGCAGTAGGGTAACA-AG-CCGAA-ATG
*** *
102710954 ATGGGCCTTAAACCCCTAAGTAGTAGGGTAACAGGCTG
127 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG
102710992 GAAATTACAA
Statistics
Matches: 384, Mismatches: 33, Indels: 16
0.89 0.08 0.04
Matches are distributed among these distances:
259 28 0.07
260 2 0.01
261 7 0.02
262 110 0.29
263 235 0.61
264 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (263 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
GGAAACAGATCAAAGATGATAGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAATGACAA
GCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
AGAGAAACAGATAAAAAATGATGGGCTTTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
AAC
Found at i:102711126 original size:68 final size:68
Alignment explanation
Indices: 102711017--102711203 Score: 277
Period size: 68 Copynumber: 2.8 Consensus size: 68
102711007 TTTTTCCCTA
* * * *
102711017 AAATGGCATTGGAGCGGCTAAAAGCCATAGCAGATCTCCTTGAAGTTTCAG-AGGATCTTTTCTT
1 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA-AACCTCTTCTT
*
102711081 CCTG
65 CCAG
* *
102711085 AAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTC
1 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTC
102711150 CAG
66 CAG
* *
102711153 AAATGGCATTGGAGAGGCTAAAAGTCACAGCAGATCTCCTTGAAGTTTCAG
1 AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
102711204 TGGAAGAAGA
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 106 0.99
69 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (68 bp):
AAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTC
CAG
Found at i:102711363 original size:44 final size:44
Alignment explanation
Indices: 102711315--102711867 Score: 507
Period size: 44 Copynumber: 12.6 Consensus size: 44
102711305 GATTTCAGCA
102711315 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* *
102711359 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * * *
102711403 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * * * **
102711447 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATT
102711491 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * * *
102711535 TGGCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAGATT
* * * * **
102711579 TGACATTCCTGTGCTTACAGTGAAGC-AGATT-AAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAG-TTGAAA-ACATCAG-ATT
102711623 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
*
102711667 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * * *
102711711 TGGCATCCCTGTGCTTATAGGGAAC-GGATAGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAGATT
* * * * ** * * **
102711755 TGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAG-ATT
* *
102711799 TGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
102711843 TGGCATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
102711868 GGATCGAAGA
Statistics
Matches: 414, Mismatches: 76, Indels: 38
0.78 0.14 0.07
Matches are distributed among these distances:
42 3 0.01
43 24 0.06
44 357 0.86
45 27 0.07
46 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
Found at i:102711510 original size:132 final size:132
Alignment explanation
Indices: 102711359--102711693 Score: 625
Period size: 132 Copynumber: 2.5 Consensus size: 132
102711349 ACATCAGATT
* *
102711359 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
102711424 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
102711489 CA
131 CA
102711491 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
** *
102711556 GAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
102711621 CA
131 CA
102711623 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
102711688 GAACAA
66 GAACAA
102711694 GTTGAAAACA
Statistics
Matches: 196, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 196 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
CA
Found at i:102711555 original size:176 final size:177
Alignment explanation
Indices: 102711256--102711791 Score: 663
Period size: 176 Copynumber: 3.0 Consensus size: 177
102711246 AGGAGCAGAC
*
102711256 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
102711321 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGTTTATAGGGAACA-
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
* * * *
102711385 AGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA-CAAAT
131 A-TCGAAAACAACAGATCTGACATCCCTGTGCTTACAGGGAAGCAAAT
102711432 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
102711497 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGG
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
* * * * * *
102711562 ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
131 ATCGAAAACAACAGATCTGACATCCCTGTGCTTACAGGGAAGCAAAT
** ** * * * * * * **
102711609 TAAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATTTG
1 CGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--TG
*
102711669 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGA
62 GCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGA
* * * * * * * * *
102711734 ACGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGAT
127 ACAGATCGAAAACAACAGATCTGACATCCCTGTGCTTACAGGGAAGCAAAT
102711785 CGAAGAT
1 CGAAGAT
102711792 TTCAGCATGA
Statistics
Matches: 324, Mismatches: 30, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
174 1 0.00
175 7 0.02
176 303 0.94
177 13 0.04
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (177 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAG
ATCGAAAACAACAGATCTGACATCCCTGTGCTTACAGGGAAGCAAAT
Found at i:102711709 original size:132 final size:132
Alignment explanation
Indices: 102711359--102711859 Score: 600
Period size: 132 Copynumber: 3.8 Consensus size: 132
102711349 ACATCAGATT
* *
102711359 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* * * * *
102711424 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAGTCGAAAACAGCAGATCTGACATCCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCAG
102711489 CA
131 CA
102711491 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* * * *
102711556 GAAC-GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCA
66 GAACAAG-TCGAAAACAGCAGATCTGACATCCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCA
102711620 GCA
130 GCA
102711623 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * * * **
102711688 GAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA-CGGA-TAGAAGATAGCA
66 GAACAAGTCGAAAACAGCAGATCTGACATCCCTGTGCTTACAGTGAAGCAGATTA-AAGATTTCA
102711751 G-A
130 GCA
* * * * ** * * ** *
102711753 TCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCA--TGACATCCCTGTGCTTA
1 --TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAG-ATTTGGCATCCCTGTGCTTA
* * *
102711816 TAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTA
62 TAGGGAACAAGTCGAAAACAGCAGATCTGACATCCCTGTGCTTA
102711860 TAGGGAACGG
Statistics
Matches: 332, Mismatches: 30, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
130 3 0.01
131 11 0.03
132 307 0.92
133 10 0.03
134 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAGTCGAAAACAGCAGATCTGACATCCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCAG
CA
Found at i:102711793 original size:176 final size:176
Alignment explanation
Indices: 102711315--102711867 Score: 758
Period size: 176 Copynumber: 3.1 Consensus size: 176
102711305 GATTTCAGCA
*
102711315 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * * * * * * * **
102711380 GAAC-AAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA-CAAATCGAAGATAGCA
66 GAACGGA-TAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCA
* * * * * **
102711443 G-ATCTGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
130 GCA--TGACATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATT
102711491 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* **
102711556 GAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCAG
66 GAACGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
102711621 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
131 CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
*
102711667 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
*
102711732 GAACGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAG
66 GAACGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
102711797 CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
131 CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
102711843 TGGCATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
102711868 GGATCGAAGA
Statistics
Matches: 340, Mismatches: 31, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
174 1 0.00
175 6 0.02
176 319 0.94
177 13 0.04
178 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (176 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
CATGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
Found at i:102711814 original size:308 final size:308
Alignment explanation
Indices: 102711256--102711923 Score: 1246
Period size: 308 Copynumber: 2.2 Consensus size: 308
102711246 AGGAGCAGAC
*
102711256 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
102711321 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
*
102711386 GTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
131 GTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACAAATAGAAGATAGCAGATCTGAC
*
102711451 ATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAAC
196 ATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAAC
*
102711516 AAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
261 AAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
*
102711564 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATTAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
102711629 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
**
102711694 GTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACGGATAGAAGATAGCAGATCTGAC
131 GTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACAAATAGAAGATAGCAGATCTGAC
* *
102711759 ATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAAC
196 ATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAAC
102711824 AAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
261 AAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
102711872 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
102711924 AGCGGATATC
Statistics
Matches: 349, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
308 349 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (308 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
GTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACAAATAGAAGATAGCAGATCTGAC
ATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAAC
AAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
Found at i:102711867 original size:132 final size:132
Alignment explanation
Indices: 102711670--102711923 Score: 472
Period size: 132 Copynumber: 1.9 Consensus size: 132
102711660 TCAGATTTGG
102711670 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
* *
102711735 CGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCAT
66 CGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCAT
102711800 GA
131 GA
*
102711802 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
*
102711867 CGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
66 CGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
102711924 AGCGGATATC
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 118 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (132 bp):
CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
CGGATAGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCAT
GA
Found at i:102712442 original size:20 final size:21
Alignment explanation
Indices: 102712412--102712454 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
102712402 TGTTTTGGAA
102712412 GAGGTTTTTTTTTGTTTTTTG
1 GAGGTTTTTTTTTGTTTTTTG
102712433 GAGG-TTTTTTTTGTTTTTTG
1 GAGGTTTTTTTTTGTTTTTTG
102712453 GA
1 GA
102712455 AAGAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.07, C:0.00, G:0.26, T:0.67
Consensus pattern (21 bp):
GAGGTTTTTTTTTGTTTTTTG
Done.