Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 331 of 410
Found at i:102712462 original size:25 final size:24
Alignment explanation
Indices: 102712372--102712480 Score: 81
Period size: 25 Copynumber: 4.7 Consensus size: 24
102712362 GGGGGGTGGG
*
102712372 TTTTTGGTTTTTTGG-AGAAGGATT
1 TTTTTTGTTTTTTGGAAG-AGGATT
* *
102712396 GTTCTTTG--TTTTGGAAGAGGTTT
1 -TTTTTTGTTTTTTGGAAGAGGATT
102712419 TTTTTTGTTTTTT-G--GAGG-TT
1 TTTTTTGTTTTTTGGAAGAGGATT
102712439 TTTTTTGTTTTTTGGAAAGAAGG-TT
1 TTTTTTGTTTTTTGG-AAG-AGGATT
* *
102712464 GTTTTTGTTTCTTGGAA
1 TTTTTTGTTTTTTGGAA
102712481 AGGCTAGTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 17
0.75 0.06 0.18
Matches are distributed among these distances:
20 15 0.21
21 5 0.07
22 6 0.09
23 12 0.17
24 9 0.13
25 23 0.33
ACGTcount: A:0.14, C:0.02, G:0.27, T:0.58
Consensus pattern (24 bp):
TTTTTTGTTTTTTGGAAGAGGATT
Found at i:102712795 original size:3 final size:3
Alignment explanation
Indices: 102712781--102712866 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
102712771 GAGCTTCGTT
* *
102712781 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
102712825 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
102712867 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:102712819 original size:27 final size:27
Alignment explanation
Indices: 102712780--102712866 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
102712770 AGAGCTTCGT
102712780 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
102712807 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
102712832 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
102712858 -TTATATTAT
1 TTTATATTAT
102712867 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:102712841 original size:21 final size:18
Alignment explanation
Indices: 102712781--102712870 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
102712771 GAGCTTCGTT
*
102712781 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
102712801 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
102712819 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
102712840 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
102712858 TTA-TATTATATAT
1 TTATTATT-TATAT
102712871 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:102713117 original size:18 final size:18
Alignment explanation
Indices: 102713090--102713127 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
102713080 TATATTAGTG
*
102713090 TATATTTTTATGTATATA
1 TATATATTTATGTATATA
*
102713108 TATATATTTATTTATATA
1 TATATATTTATGTATATA
102713126 TA
1 TA
102713128 GTATTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATATATTTATGTATATA
Found at i:102714473 original size:19 final size:18
Alignment explanation
Indices: 102714454--102714505 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
102714444 TTTAAATATT
*
102714454 TTTATA-AATTTATATAA
1 TTTATATAATTTTTATAA
*
102714471 TTTATATAATTTTTATGATT
1 TTTATATAATTTTTAT-A-A
*
102714491 TTTTTATAATTTTTA
1 TTTATATAATTTTTA
102714506 ATTATCAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.21
18 8 0.28
19 1 0.03
20 14 0.48
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTATATAATTTTTATAA
Found at i:102714491 original size:9 final size:9
Alignment explanation
Indices: 102714432--102714505 Score: 58
Period size: 9 Copynumber: 7.7 Consensus size: 9
102714422 ATTCTAATTC
*
102714432 TTTTTACAA
1 TTTTTATAA
*
102714441 TTATTTAAATA
1 TT-TTTATA-A
102714452 TTTTTATAAA
1 TTTTTAT-AA
*
102714462 TTTATATAA
1 TTTTTATAA
*
102714471 TTTATATAA
1 TTTTTATAA
*
102714480 TTTTTATGATT
1 TTTTTAT-A-A
102714491 TTTTTATAA
1 TTTTTATAA
102714500 TTTTTA
1 TTTTTA
102714506 ATTATCAATT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
9 25 0.46
10 18 0.33
11 11 0.20
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:102715056 original size:6 final size:7
Alignment explanation
Indices: 102715031--102715055 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
102715021 TAGATAATAA
102715031 TTTTTAT
1 TTTTTAT
102715038 TTTTTAT
1 TTTTTAT
102715045 TTTTTAT
1 TTTTTAT
102715052 TTTT
1 TTTT
102715056 AAAAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:102716051 original size:15 final size:15
Alignment explanation
Indices: 102716031--102716084 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
102716021 ATACTACAAA
102716031 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
102716046 ATATTTATAATTTTAAT
1 ATATTTAT--TATTAAT
*
102716063 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
102716080 ATATT
1 ATATT
102716085 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 13 0.41
17 11 0.34
19 8 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:102716082 original size:19 final size:17
Alignment explanation
Indices: 102716029--102716078 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
102716019 TTATACTACA
102716029 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
*
102716046 --ATATTTATAATTTTAAT
1 AAATATTTAT--TATTAAT
102716063 AAATATTTATTATTAA
1 AAATATTTATTATTAA
102716079 AATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 8 0.30
17 11 0.41
19 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:102717150 original size:2 final size:2
Alignment explanation
Indices: 102717143--102717171 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
102717133 TTGAATTTTG
102717143 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102717172 AGTGTATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102717721 original size:2 final size:2
Alignment explanation
Indices: 102717708--102717750 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
102717698 TAGTTAATGT
*
102717708 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102717750 T
1 T
102717751 GCTTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:102721481 original size:28 final size:29
Alignment explanation
Indices: 102721426--102721502 Score: 122
Period size: 28 Copynumber: 2.7 Consensus size: 29
102721416 CAAGTATATC
* *
102721426 TTTTT-TCTCATTTTGGTACTTAATTTTT
1 TTTTTATCTCAATTAGGTACTTAATTTTT
102721454 TTTTTATCTCAATTAGGTACTTAA-TTTT
1 TTTTTATCTCAATTAGGTACTTAATTTTT
102721482 TTTTTATCTCAATTAGGTACT
1 TTTTTATCTCAATTAGGTACT
102721503 AAAACTTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
28 30 0.65
29 16 0.35
ACGTcount: A:0.21, C:0.12, G:0.08, T:0.60
Consensus pattern (29 bp):
TTTTTATCTCAATTAGGTACTTAATTTTT
Found at i:102722572 original size:14 final size:15
Alignment explanation
Indices: 102722543--102722583 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
102722533 TTTAGGTTTG
102722543 AAAATTTTAATTAATT
1 AAAATTTT-ATTAATT
102722559 AAAATTTT-TTAATT
1 AAAATTTTATTAATT
*
102722573 AAAAATTTATT
1 AAAATTTTATT
102722584 TTCATTCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 2 0.09
16 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATTTTATTAATT
Found at i:102722737 original size:29 final size:29
Alignment explanation
Indices: 102722702--102722782 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
102722692 ACAAAATAAT
*
102722702 AACATAAATGACTAAAATGTAACATTTTA
1 AACATAAGTGACTAAAATGTAACATTTTA
*
102722731 AACATAAGTGACTAAAACGTAACATTTTA
1 AACATAAGTGACTAAAATGTAACATTTTA
102722760 AACATAAGTGACTAAAATGTAAC
1 AACATAAGTGACTAAAATGTAAC
102722783 TTGAGGCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (29 bp):
AACATAAGTGACTAAAATGTAACATTTTA
Found at i:102725787 original size:26 final size:26
Alignment explanation
Indices: 102725741--102725793 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
102725731 TCAAACATGC
*
102725741 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
102725767 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
102725793 A
1 A
102725794 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:102727319 original size:26 final size:26
Alignment explanation
Indices: 102727281--102727338 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
102727271 CATGAAATTC
102727281 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
102727307 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
102727333 TTATCA
1 TTATCA
102727339 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:102730017 original size:3 final size:3
Alignment explanation
Indices: 102730009--102730066 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
102729999 AAGAAAAGAA
102730009 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102730057 AAT AAT AAT A
1 AAT AAT AAT A
102730067 CATTATTAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:102731721 original size:19 final size:19
Alignment explanation
Indices: 102731697--102731734 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
102731687 AAGTAAATCC
102731697 ATCTCAAGTGAGTCTGAGT
1 ATCTCAAGTGAGTCTGAGT
102731716 ATCTCAAGTGAGTCTGAGT
1 ATCTCAAGTGAGTCTGAGT
102731735 TTACCTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (19 bp):
ATCTCAAGTGAGTCTGAGT
Found at i:102740896 original size:43 final size:42
Alignment explanation
Indices: 102740757--102740896 Score: 226
Period size: 42 Copynumber: 3.3 Consensus size: 42
102740747 GCTATAGCAT
* * *
102740757 ACGCAGCTAAAGATCGAGACCTTTAGCGGCGCTTCCCCAGAA
1 ACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTCCCCAAAA
102740799 ACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTCCCCAAAA
1 ACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTCCCCAAAA
* *
102740841 ACGCCGCTAAAGATCGTGACCTATAGCGGCGCTTTCTCCAAAA
1 ACGCCGCTAAAGATCGTGACCTTTAGCGGCGC-TTCCCCAAAA
102740884 ACGCCGCTAAAGA
1 ACGCCGCTAAAGA
102740897 CCATATATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
42 70 0.76
43 22 0.24
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (42 bp):
ACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTCCCCAAAA
Found at i:102741392 original size:23 final size:23
Alignment explanation
Indices: 102741366--102741469 Score: 163
Period size: 23 Copynumber: 4.5 Consensus size: 23
102741356 CTACACAAAG
102741366 AACATTTAAACACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
** *
102741389 AACATTTAAATTCTTCAGTTTAC
1 AACATTTAAACACTTCAATTTAC
102741412 AACATTTAAACACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
*
102741435 AGCATTTAAACACTTCAATTTAC
1 AACATTTAAACACTTCAATTTAC
*
102741458 AGCATTTAAACA
1 AACATTTAAACA
102741470 GCAGCAACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 74 1.00
ACGTcount: A:0.41, C:0.20, G:0.03, T:0.36
Consensus pattern (23 bp):
AACATTTAAACACTTCAATTTAC
Found at i:102744698 original size:63 final size:62
Alignment explanation
Indices: 102744625--102744800 Score: 196
Period size: 63 Copynumber: 2.8 Consensus size: 62
102744615 CAGGAAACTA
102744625 GAAAACTAATATAATAGAAATAAGAAACCCAAACAAAAAAAATCAAAAATTTCTAAGACGATT
1 GAAAACTAATATAATAGAAATAAGAAACCCAAACAAAAAAAATCAAAAATTT-TAAGACGATT
** ** *
102744688 GAAAACTAATATAATAGAAAATAAGAAACCCAAA-TTAAAATTTCTAAAATTTTAAGACGATT
1 GAAAACTAATATAATAG-AAATAAGAAACCCAAACAAAAAAAATCAAAAATTTTAAGACGATT
* * * *
102744750 GAAAATTAA-AGGAAGTA-AATTTCAACAAACCCAAACAAAAAAAATCAAAAA
1 GAAAACTAATA-TAA-TAGAA-AT-AAGAAACCCAAACAAAAAAAATCAAAAA
102744801 CCTCACATAC
Statistics
Matches: 93, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
61 3 0.03
62 21 0.23
63 43 0.46
64 26 0.28
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.20
Consensus pattern (62 bp):
GAAAACTAATATAATAGAAATAAGAAACCCAAACAAAAAAAATCAAAAATTTTAAGACGATT
Found at i:102745793 original size:21 final size:21
Alignment explanation
Indices: 102745750--102745793 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
102745740 CCTAACACTT
* * *
102745750 AACCCCTACCCCTAAGCCTTA
1 AACCCCAACCCCTAAACCATA
*
102745771 AACCCCAACCCTTAAACCATA
1 AACCCCAACCCCTAAACCATA
102745792 AA
1 AA
102745794 TCATAATCCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.43, G:0.02, T:0.16
Consensus pattern (21 bp):
AACCCCAACCCCTAAACCATA
Found at i:102745815 original size:15 final size:15
Alignment explanation
Indices: 102745777--102745828 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
102745767 CTTAAACCCC
* *
102745777 AACCCTTAAACCATA
1 AACCCATAATCCATA
* *
102745792 AA-TCATAATCCCTA
1 AACCCATAATCCATA
102745806 AACCCATAATCCATA
1 AACCCATAATCCATA
102745821 AACCCATA
1 AACCCATA
102745829 TTTCATTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:102745876 original size:20 final size:20
Alignment explanation
Indices: 102745853--102745896 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
102745843 TTGTATTTCA
102745853 TTTTTATTT-GTTATCAATG
1 TTTTTATTTAGTTATCAATG
*
102745872 TTTTTATTTATTTATCAATG
1 TTTTTATTTAGTTATCAATG
102745892 TTTTT
1 TTTTT
102745897 TTAAATCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.20, C:0.05, G:0.07, T:0.68
Consensus pattern (20 bp):
TTTTTATTTAGTTATCAATG
Found at i:102746329 original size:14 final size:14
Alignment explanation
Indices: 102746302--102746345 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
102746292 TAGTAATTCA
*
102746302 TAAACCTTAAACCC
1 TAAACCATAAACCC
* *
102746316 TTAACCATATACCC
1 TAAACCATAAACCC
*
102746330 TAAATCATAAACCC
1 TAAACCATAAACCC
102746344 TA
1 TA
102746346 CACTATAATG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:102746467 original size:14 final size:13
Alignment explanation
Indices: 102746448--102746491 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
102746438 TAATTAACTA
102746448 AACCCTAAACTCCT
1 AACCCTAAAC-CCT
*
102746462 AACCCTTAACCACT
1 AACCCTAAACC-CT
102746476 AACCCATAAACCCT
1 AACCC-TAAACCCT
102746490 AA
1 AA
102746492 ATCTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 20 0.77
15 5 0.19
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:102746628 original size:295 final size:294
Alignment explanation
Indices: 102746188--102746722 Score: 801
Period size: 295 Copynumber: 1.8 Consensus size: 294
102746178 CCCTTAACTC
* *
102746188 TAAACTCTAAAATCTTAAAATATAAATCATTAACCCTAAACCCATAACCCATAACCCTTAACCTT
1 TAAACCCTAAAATCTTAAAATATAAATCATTAACCCTAAACCCATAACCCATAACCCTCAACCTT
* * * *
102746253 AAGCCCCAACCCTTAAACCATAATACATAAACCTTAAAATAGTAATTCATAAACCTTAAACCCTT
66 AAACCACAACCCTTAAACCATAATACATAAAACTTAAAATAGTAACTCATAAACCTTAAACCCTT
* * *
102746318 AACCATATACCCTAAATCAT-AAACCCTACACTATAATGATTAATTGATTCAATATTTTTAAATT
131 AACCATATACCCTAAATCATAAAACCCTAAACTATAATGA-TAATTAATTCAATATTTTAAAATT
** *
102746382 AATATTATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAACACTAATTAACT
195 AATACCATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAACACTAATTAACT
102746447 AAACCCTAAACTCCTAACCCTTAACCACTAACCCA
260 AAACCCTAAACTCCTAACCCTTAACCACTAACCCA
* * * *
102746482 TAAACCCT-AAATCTTAAAATATAAACTC-TTAATCCTAGACCCCTAACCCCTAACCC-CAACCC
1 TAAACCCTAAAATCTTAAAATATAAA-TCATTAACCCTAAACCCATAACCCATAACCCTCAA-CC
* *
102746544 TTAAACCATAATCCC-TAAACCCAATAATTCATAAAACTTAAAATAGTAACTCATAAACCTTAAA
64 TTAAACCACAA-CCCTTAAA-CC-ATAATACATAAAACTTAAAATAGTAACTCATAAACCTTAAA
* *
102746608 CCCTTAACCATATGCCCTAAATCGTAAAACCCTAAACTATAATGATAATTAATTCAATATTTTAA
126 CCCTTAACCATATACCCTAAATCATAAAACCCTAAACTATAATGATAATTAATTCAATATTTTAA
102746673 AATTAATACCATCTCTTTTACAATTATATAAGAAAATATTTAACATATAA
191 AATTAATACCATCTCTTTTACAATTATATAAGAAAATATTTAACATATAA
102746723 TGTACATAAA
Statistics
Matches: 215, Mismatches: 20, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
292 2 0.01
293 55 0.26
294 14 0.07
295 126 0.59
296 18 0.08
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.30
Consensus pattern (294 bp):
TAAACCCTAAAATCTTAAAATATAAATCATTAACCCTAAACCCATAACCCATAACCCTCAACCTT
AAACCACAACCCTTAAACCATAATACATAAAACTTAAAATAGTAACTCATAAACCTTAAACCCTT
AACCATATACCCTAAATCATAAAACCCTAAACTATAATGATAATTAATTCAATATTTTAAAATTA
ATACCATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAACACTAATTAACTA
AACCCTAAACTCCTAACCCTTAACCACTAACCCA
Found at i:102746787 original size:22 final size:23
Alignment explanation
Indices: 102746756--102746805 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
102746746 TTTTTTAGGG
102746756 TTTAAAGTTTTAGAGG-TTA-TAT
1 TTTAAAG-TTTAGAGGTTTAGTAT
*
102746778 TTTAATGTTTAGAGGTTTAGTAT
1 TTTAAAGTTTAGAGGTTTAGTAT
102746801 TTTAA
1 TTTAA
102746806 GGGTTATAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 8 0.32
22 9 0.36
23 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (23 bp):
TTTAAAGTTTAGAGGTTTAGTAT
Found at i:102746790 original size:21 final size:23
Alignment explanation
Indices: 102746764--102746805 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
102746754 GGTTTAAAGT
102746764 TTTAGAGG-TTA-TATTTTAATG
1 TTTAGAGGTTTAGTATTTTAATG
102746785 TTTAGAGGTTTAGTATTTTAA
1 TTTAGAGGTTTAGTATTTTAA
102746806 GGGTTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 3 0.16
23 8 0.42
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (23 bp):
TTTAGAGGTTTAGTATTTTAATG
Found at i:102747099 original size:41 final size:40
Alignment explanation
Indices: 102746862--102747121 Score: 351
Period size: 41 Copynumber: 6.4 Consensus size: 40
102746852 GGGTTATGAC
*
102746862 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCCAT-T
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCT-C-TGT
102746903 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-GT
* * *
102746944 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTATTGCTCCGAT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG-T
102746985 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-GT
*
102747026 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGT
** * * * * *
102747066 TTTTAGCGGCGTTTTAACAAAAAACGCCACTATTGATCTGC
1 TTTTAGCGGCGTTTT-ACCGAAAGCGCCGCTAATGCTCTGT
102747107 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
102747122 TGTTCTATTG
Statistics
Matches: 200, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
39 1 0.00
40 19 0.09
41 179 0.89
42 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGT
Found at i:102747130 original size:31 final size:31
Alignment explanation
Indices: 102747095--102747154 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
102747085 AAAAACGCCA
102747095 CTATTGATCTGCTTTTAGCGGCGTTTTTGTT
1 CTATTGATCTGCTTTTAGCGGCGTTTTTGTT
* * * *
102747126 CTATTGCTTTGTTTTTAGCGGTGTTTTTG
1 CTATTGATCTGCTTTTAGCGGCGTTTTTG
102747155 GTAAAACGCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.08, C:0.13, G:0.23, T:0.55
Consensus pattern (31 bp):
CTATTGATCTGCTTTTAGCGGCGTTTTTGTT
Found at i:102759383 original size:24 final size:23
Alignment explanation
Indices: 102759356--102759461 Score: 83
Period size: 24 Copynumber: 4.4 Consensus size: 23
102759346 GTTTCGAATG
102759356 AATAATGTATAAAAGTTTAAAATA
1 AATAAT-TATAAAAGTTTAAAATA
* *
102759380 AATAA-TAAAAAGAGCTTAAAAATA
1 AATAATTATAAA-AG-TTTAAAATA
*
102759404 AATAATT-TAAAAACTTTAAAATA
1 AATAATTAT-AAAAGTTTAAAATA
* *
102759427 AATAACATATAAAACGGTTTAAATTA
1 AATAA-TTATAAAA--GTTTAAAATA
102759453 AAT-ATTATA
1 AATAATTATA
102759462 TGATATAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
22 5 0.08
23 15 0.23
24 28 0.43
25 6 0.09
26 11 0.17
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (23 bp):
AATAATTATAAAAGTTTAAAATA
Found at i:102759733 original size:3 final size:3
Alignment explanation
Indices: 102759725--102759777 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
102759715 CAAATAGTAA
102759725 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
102759773 GAT AA
1 AAT AA
102759778 ACATCAATAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:102759836 original size:14 final size:14
Alignment explanation
Indices: 102759819--102759851 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
102759809 AATAATAGTA
102759819 AAATATAAA-TAGAT
1 AAATA-AAATTAGAT
102759833 AAATAAAATTAGAT
1 AAATAAAATTAGAT
102759847 AAATA
1 AAATA
102759852 GTAATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (14 bp):
AAATAAAATTAGAT
Found at i:102760829 original size:14 final size:14
Alignment explanation
Indices: 102760808--102760841 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
102760798 TTTTTTACAT
102760808 AAAAAAGAAAA-AA
1 AAAAAAGAAAACAA
102760821 AATAAAAGAAAACAA
1 AA-AAAAGAAAACAA
102760836 AAAAAA
1 AAAAAA
102760842 AACAGAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 13 0.68
15 4 0.21
ACGTcount: A:0.88, C:0.03, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAACAA
Found at i:102762304 original size:82 final size:82
Alignment explanation
Indices: 102762167--102762337 Score: 288
Period size: 82 Copynumber: 2.1 Consensus size: 82
102762157 ACAAGTGAAA
* *
102762167 ATTTACAAATAGGGAGAGAGAACAATGCCCTAGGTAGAGAATAATAAATGCGGGATGATTCAAAT
1 ATTTATAAATAGGGAGAGAGAACAATGCCCTAGGTAGAGAATAATAAATACGGGATGATTCAAAT
* *
102762232 GAGAAATGGTTAGGCCT
66 AAAAAATGGTTAGGCCT
* *
102762249 ATTTATAAATAGGGAGAGAGAACAATGCCTTAGGTAGAGAATAATAAATATGGGATGATTCAAAT
1 ATTTATAAATAGGGAGAGAGAACAATGCCCTAGGTAGAGAATAATAAATACGGGATGATTCAAAT
102762314 AAAAAATGGTTAGGCCT
66 AAAAAATGGTTAGGCCT
102762331 ATTTATA
1 ATTTATA
102762338 GTTGAGATTC
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.25
Consensus pattern (82 bp):
ATTTATAAATAGGGAGAGAGAACAATGCCCTAGGTAGAGAATAATAAATACGGGATGATTCAAAT
AAAAAATGGTTAGGCCT
Found at i:102763182 original size:37 final size:37
Alignment explanation
Indices: 102763132--102763208 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
102763122 GACAGTAGAG
*
102763132 ATAGTTTTCTTCAATAGATGTAGCGTAACAAGCTCAA
1 ATAGTTTTCTTCAATAGATGTAGCATAACAAGCTCAA
102763169 ATAGTTTTCTTCAATAGATGTAGCATAACAAGCTCAA
1 ATAGTTTTCTTCAATAGATGTAGCATAACAAGCTCAA
102763206 ATA
1 ATA
102763209 ATCTCCCTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (37 bp):
ATAGTTTTCTTCAATAGATGTAGCATAACAAGCTCAA
Found at i:102765367 original size:10 final size:9
Alignment explanation
Indices: 102765348--102765382 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
102765338 TATTTTTCTC
102765348 TTTATTTAT
1 TTTATTTAT
102765357 TTTATTTTAT
1 TTTA-TTTAT
102765367 TTTATTTAT
1 TTTATTTAT
102765376 TATTATT
1 T-TTATT
102765383 AACTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 10 0.42
10 14 0.58
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTAT
Found at i:102765960 original size:13 final size:13
Alignment explanation
Indices: 102765929--102765965 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
102765919 ATTATATTTA
102765929 AAATTTAAAA-A-
1 AAATTTAAAATAT
*
102765940 ATATTTAAAATAT
1 AAATTTAAAATAT
102765953 AAATTTAAAATAT
1 AAATTTAAAATAT
102765966 TATAAAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 9 0.41
12 1 0.05
13 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTTAAAATAT
Found at i:102766047 original size:24 final size:23
Alignment explanation
Indices: 102766019--102766124 Score: 103
Period size: 24 Copynumber: 4.5 Consensus size: 23
102766009 AATATATTTT
102766019 AAATAATTTCAAAATCATAATTAA
1 AAATAATTT-AAAATCATAATTAA
*
102766043 AAATAATTAAAAAATCATAATTAA
1 AAATAATT-TAAAATCATAATTAA
*
102766067 AAAAAATTATAAAA-CA-AATTAA
1 AAATAATT-TAAAATCATAATTAA
*
102766089 AATATACATTTAAAAT-ATTA-TAA
1 AA-ATA-ATTTAAAATCATAATTAA
102766112 AAATAATATTAAA
1 AAATAAT-TTAAA
102766125 TTTGAAAAGT
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
21 2 0.03
22 16 0.23
23 15 0.21
24 38 0.54
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (23 bp):
AAATAATTTAAAATCATAATTAA
Found at i:102766050 original size:10 final size:10
Alignment explanation
Indices: 102766035--102766118 Score: 51
Period size: 12 Copynumber: 7.5 Consensus size: 10
102766025 TTTCAAAATC
102766035 ATAATTAAAA
1 ATAATTAAAA
102766045 ATAATTAAAAAA
1 ATAATT--AAAA
102766057 TCATAATTAAAA
1 --ATAATTAAAA
*
102766069 AAAATTATAAA
1 ATAATTA-AAA
*
102766080 ACAAATTAAAA
1 A-TAATTAAAA
*
102766091 TATACATTTAAA
1 -ATA-ATTAAAA
*
102766103 ATATTATAAAA
1 ATAAT-TAAAA
102766114 ATAAT
1 ATAAT
102766119 ATTAAATTTG
Statistics
Matches: 59, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
10 13 0.22
11 19 0.32
12 21 0.36
14 6 0.10
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAATTAAAA
Found at i:102766186 original size:21 final size:21
Alignment explanation
Indices: 102766162--102766212 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
102766152 TAAATGTTTT
102766162 ATATTATTAAAAAT-ATATCTA
1 ATATT-TTAAAAATAATATCTA
* *
102766183 ATATTTAAAAAATAATATTTA
1 ATATTTTAAAAATAATATCTA
102766204 A-ATTTTAAA
1 ATATTTTAAA
102766213 CAATGATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATATTTTAAAAATAATATCTA
Found at i:102766198 original size:14 final size:14
Alignment explanation
Indices: 102766181--102766238 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
102766171 AAAATATATC
102766181 TAATATTTAAAAAA
1 TAATATTTAAAAAA
102766195 TAATATTTAAATTTTAAA
1 TAATATTTAAA----AAA
*
102766213 CAATGATTT-AAAAA
1 TAAT-ATTTAAAAAA
102766227 TAATATTTAAAA
1 TAATATTTAAAA
102766239 TTTAGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 4 0.11
14 20 0.56
18 8 0.22
19 4 0.11
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (14 bp):
TAATATTTAAAAAA
Found at i:102766231 original size:32 final size:33
Alignment explanation
Indices: 102766185--102766284 Score: 121
Period size: 32 Copynumber: 3.0 Consensus size: 33
102766175 TATATCTAAT
* * *
102766185 ATTTAAAAAATAATATTTAAATTTTAAACAATG
1 ATTTAAAAAATAATATTTAAAATTTAAAAAATA
102766218 ATTT-AAAAATAATATTTAAAATTTAGAAAAATA
1 ATTTAAAAAATAATATTTAAAATTTA-AAAAATA
* * *
102766251 ATTTCAAATATATATATTTAAAATTTAATAAATA
1 ATTTAAAAAATA-ATATTTAAAATTTAAAAAATA
102766285 TATATTATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
32 20 0.34
33 13 0.22
34 12 0.20
35 14 0.24
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (33 bp):
ATTTAAAAAATAATATTTAAAATTTAAAAAATA
Found at i:102766254 original size:20 final size:20
Alignment explanation
Indices: 102766218--102766296 Score: 53
Period size: 20 Copynumber: 4.0 Consensus size: 20
102766208 TTAAACAATG
102766218 ATTTAAAAATAATATTTAAA
1 ATTTAAAAATAATATTTAAA
* *
102766238 ATTTAGAAA-AATAATTTCAA
1 ATTTAAAAATAAT-ATTTAAA
*
102766258 A--T--ATAT-ATATTTAAA
1 ATTTAAAAATAATATTTAAA
102766273 ATTTAATAAATATATATTATAAA
1 ATTTAA-AAATA-ATATT-TAAA
102766296 A
1 A
102766297 CATTTCAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 17
0.67 0.08 0.26
Matches are distributed among these distances:
15 7 0.16
16 4 0.09
17 1 0.02
18 1 0.02
19 3 0.07
20 18 0.41
22 5 0.11
23 5 0.11
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (20 bp):
ATTTAAAAATAATATTTAAA
Found at i:102766276 original size:22 final size:24
Alignment explanation
Indices: 102766250--102766309 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 24
102766240 TTAGAAAAAT
102766250 AATTTCAAATATATATATT-T-AA
1 AATTTCAAATATATATATTATAAA
*
102766272 AATTT-AATAAATATATATTATAAA
1 AATTTCAA-ATATATATATTATAAA
102766296 ACATTTCAAATATA
1 A-ATTTCAAATATA
102766310 CATTTCAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 1 0.03
24 3 0.10
25 8 0.26
26 2 0.06
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (24 bp):
AATTTCAAATATATATATTATAAA
Found at i:102766343 original size:4 final size:4
Alignment explanation
Indices: 102766334--102766373 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
102766324 TAAAATTAAT
102766334 AATA AATA AATA AA-A TAA-A AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA -AATA AATA AATA AATA AATA AATA A
102766374 TGATAAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:102766355 original size:15 final size:14
Alignment explanation
Indices: 102766326--102766366 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
102766316 AAGTTTTTTA
*
102766326 AAATTAATAATAAAT
1 AAATAAATAA-AAAT
102766341 AAATAAAATAAAAAT
1 AAAT-AAATAAAAAT
102766356 AAATAAATAAA
1 AAATAAATAAA
102766367 TAAATAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 7 0.29
15 12 0.50
16 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATAAATAAAAAT
Found at i:102766358 original size:19 final size:19
Alignment explanation
Indices: 102766324--102766391 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
102766314 TCAAGTTTTT
*
102766324 TAAAATTAATAATAAATAAA
1 TAAAA-TAAAAATAAATAAA
102766344 TAAAATAAAAATAAATAAA
1 TAAAATAAAAATAAATAAA
*
102766363 T-AAATAAATAAT-GATAAA
1 TAAAATAAA-AATAAATAAA
*
102766381 GAAAA-AAAAAT
1 TAAAATAAAAAT
102766392 GTCAGAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
17 3 0.07
18 15 0.35
19 20 0.47
20 5 0.12
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (19 bp):
TAAAATAAAAATAAATAAA
Found at i:102766488 original size:22 final size:23
Alignment explanation
Indices: 102766432--102766489 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 23
102766422 TAAAAAAAAA
* *
102766432 AAAAATTTAAAAAATATATATTC
1 AAAATTTTAAAAAATATAAATTC
** *
102766455 AATGTTTAAAAAAATA-AAATTC
1 AAAATTTTAAAAAATATAAATTC
102766477 AAAATTTTAAAAA
1 AAAATTTTAAAAA
102766490 TAATTTAAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAATTTTAAAAAATATAAATTC
Found at i:102766668 original size:16 final size:16
Alignment explanation
Indices: 102766647--102766680 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102766637 GACAAAAGAT
*
102766647 AATAAAAAATTAAAAA
1 AATAAAAAAGTAAAAA
*
102766663 AATAAATAAGTAAAAA
1 AATAAAAAAGTAAAAA
102766679 AA
1 AA
102766681 AAGTGAAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (16 bp):
AATAAAAAAGTAAAAA
Found at i:102767006 original size:21 final size:22
Alignment explanation
Indices: 102766980--102767033 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
102766970 GAAAGTTTAA
102766980 AATATTTAAAATTTAAAAAA-T
1 AATATTTAAAATTTAAAAAAGT
102767001 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTTAAAAAAGT
*
102767023 AAT-TTCAAAAT
1 AATATTTAAAAT
102767034 ATATATTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAGT
Found at i:102772042 original size:16 final size:16
Alignment explanation
Indices: 102772021--102772061 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
102772011 TACATTCCTA
102772021 ATATAAAATATATTAT
1 ATATAAAATATATTAT
* *
102772037 ATATAATATATATTGT
1 ATATAAAATATATTAT
102772053 -TATAAAATA
1 ATATAAAATA
102772062 AAGGACAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
ATATAAAATATATTAT
Found at i:102773780 original size:26 final size:26
Alignment explanation
Indices: 102773751--102773803 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
102773741 TCAAACATGC
102773751 ATTTAGGTTAATTTAAC-CCTAGGGGT
1 ATTTAGG-TAATTTAACTCCTAGGGGT
* *
102773777 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
102773803 A
1 A
102773804 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTAACTCCTAGGGGT
Found at i:102775348 original size:40 final size:40
Alignment explanation
Indices: 102775293--102775369 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
102775283 ATCATGGAAC
102775293 ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
1 ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
*
102775333 ATTTACCTAATCCATTATCATGGAACATTTACCTAAC
1 ATTTACCTAAACCATTATCATGGAACATTTACCTAAC
102775370 CCATTATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (40 bp):
ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
Found at i:102778842 original size:24 final size:24
Alignment explanation
Indices: 102778815--102778862 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
102778805 AAAGGACTTA
102778815 GTACAGATACCCCACTCACAATCT
1 GTACAGATACCCCACTCACAATCT
102778839 GTACAGATACCCCACTCACAATCT
1 GTACAGATACCCCACTCACAATCT
102778863 CCTCAGAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.38, G:0.08, T:0.21
Consensus pattern (24 bp):
GTACAGATACCCCACTCACAATCT
Found at i:102782348 original size:40 final size:40
Alignment explanation
Indices: 102782293--102782369 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
102782283 ATCATGGAAC
102782293 ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
1 ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
*
102782333 ATTTACCTAATCCATTATCATGGAACATTTACCTAAC
1 ATTTACCTAAACCATTATCATGGAACATTTACCTAAC
102782370 CCATTATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (40 bp):
ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
Found at i:102783252 original size:2 final size:2
Alignment explanation
Indices: 102783245--102783272 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
102783235 AATTTATTCC
102783245 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102783273 TTCTTAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102794219 original size:33 final size:34
Alignment explanation
Indices: 102794182--102794253 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
102794172 TAAGTAAATA
*
102794182 AATAATTATTACTAA-AT-ATAATATA-ATAGTTAT
1 AATAATT-TTAATAATATAATAATATATAT-GTTAT
102794215 AATAA-TTTAATAATATAATAATATATATGTTAT
1 AATAATTTTAATAATATAATAATATATATGTTAT
102794248 AATAAT
1 AATAAT
102794254 AAAAGAATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
31 6 0.18
32 3 0.09
33 23 0.68
34 2 0.06
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (34 bp):
AATAATTTTAATAATATAATAATATATATGTTAT
Found at i:102794227 original size:8 final size:8
Alignment explanation
Indices: 102794199--102794254 Score: 58
Period size: 8 Copynumber: 6.8 Consensus size: 8
102794189 ATTACTAAAT
102794199 ATAATATA
1 ATAATATA
*
102794207 ATAGTTATA
1 ATA-ATATA
*
102794216 ATAATTTA
1 ATAATATA
102794224 ATAATATA
1 ATAATATA
102794232 ATAATATA
1 ATAATATA
**
102794240 TATGTTATA
1 -ATAATATA
102794249 ATAATA
1 ATAATA
102794255 AAAGAATCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
8 25 0.66
9 13 0.34
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (8 bp):
ATAATATA
Found at i:102796104 original size:20 final size:20
Alignment explanation
Indices: 102796081--102796121 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
102796071 TGGCCACACA
* *
102796081 GCCATGTTCTAGGCCAAACG
1 GCCATGTCCCAGGCCAAACG
*
102796101 GCCATGTCCCAGGCCACACG
1 GCCATGTCCCAGGCCAAACG
102796121 G
1 G
102796122 ACGTGTGCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.22, C:0.37, G:0.27, T:0.15
Consensus pattern (20 bp):
GCCATGTCCCAGGCCAAACG
Found at i:102814652 original size:25 final size:25
Alignment explanation
Indices: 102814624--102814736 Score: 122
Period size: 25 Copynumber: 4.6 Consensus size: 25
102814614 GGACTCACCA
*
102814624 CAGCTCGCATGAGCTTATCGTTATC
1 CAGCTCGCATGAGCTTATCGTTATT
* * * *
102814649 CAGCTTGGAGGAGCTTATCGATATT
1 CAGCTCGCATGAGCTTATCGTTATT
*
102814674 CAGCTCACATGAGCTTATCGTTATT
1 CAGCTCGCATGAGCTTATCGTTATT
* *
102814699 CAGCTCGGAGGAGCTTATCGATTA-T
1 CAGCTCGCATGAGCTTATCG-TTATT
*
102814724 C-GCTCGTATGAGC
1 CAGCTCGCATGAGC
102814737 ATATATGGAT
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
24 10 0.14
25 59 0.82
26 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTATCGTTATT
Found at i:102814703 original size:50 final size:50
Alignment explanation
Indices: 102814624--102814720 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
102814614 GGACTCACCA
* *
102814624 CAGCTCGCATGAGCTTATCGTTATCCAGCTTGGAGGAGCTTATCGATATT
1 CAGCTCACATGAGCTTATCGTTATCCAGCTCGGAGGAGCTTATCGATATT
*
102814674 CAGCTCACATGAGCTTATCGTTATTCAGCTCGGAGGAGCTTATCGAT
1 CAGCTCACATGAGCTTATCGTTATCCAGCTCGGAGGAGCTTATCGAT
102814721 TATCGCTCGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (50 bp):
CAGCTCACATGAGCTTATCGTTATCCAGCTCGGAGGAGCTTATCGATATT
Found at i:102818256 original size:32 final size:27
Alignment explanation
Indices: 102818174--102818260 Score: 108
Period size: 27 Copynumber: 3.2 Consensus size: 27
102818164 AGGAAGCGTC
102818174 CTGGTGGC-CATGCCACA-ATTATCTGAT
1 CTGGTGGCTC-TGCCACATA-TATCTGAT
*
102818201 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
102818228 CTTGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
102818255 CTGGTG
1 CTGGTG
102818261 ACTTCGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.13
27 44 0.83
28 2 0.04
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:102825013 original size:28 final size:26
Alignment explanation
Indices: 102824982--102825042 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
102824972 AAAAGTAGCT
*
102824982 AAATTACTATAACACCCCTATGTATGGA
1 AAATTACTATAACACCCCTA-G-ATGCA
* * *
102825010 AAATTACTGTTATACCCCTAGATGCA
1 AAATTACTATAACACCCCTAGATGCA
102825036 AAATTAC
1 AAATTAC
102825043 CGTTATACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.38
27 1 0.03
28 17 0.59
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
AAATTACTATAACACCCCTAGATGCA
Found at i:102825047 original size:26 final size:27
Alignment explanation
Indices: 102824995--102825056 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
102824985 TTACTATAAC
* *
102824995 ACCCCTATGTATGGAAAATTACTGTTAT
1 ACCCCTA-GTATGCAAAATTACCGTTAT
102825023 ACCCCTAG-ATGCAAAATTACCGTTAT
1 ACCCCTAGTATGCAAAATTACCGTTAT
102825049 ACCCCTAG
1 ACCCCTAG
102825057 GGTTAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 24 0.75
27 1 0.03
28 7 0.22
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
ACCCCTAGTATGCAAAATTACCGTTAT
Found at i:102825201 original size:27 final size:26
Alignment explanation
Indices: 102825161--102825301 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
102825151 AGGAAGCGTC
*
102825161 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
102825188 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
102825215 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
102825242 CCGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
102825269 CTAGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
102825296 CTGGTG
1 CTGGTG
102825302 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:102825248 original size:54 final size:53
Alignment explanation
Indices: 102825161--102825301 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
102825151 AGGAAGCGTC
102825161 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
102825215 CTGGTGGCTATGCCACGATTATCTGATCCGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
102825269 CTAGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
102825302 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:102841009 original size:25 final size:26
Alignment explanation
Indices: 102840975--102841024 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
102840965 AATATAATAC
*
102840975 AAATATACAAATTC-TTCTTCTTTTT
1 AAATACACAAATTCTTTCTTCTTTTT
*
102841000 AAATACACAAATTCTTTTTTCTTTT
1 AAATACACAAATTCTTTCTTCTTTT
102841025 CTTTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (26 bp):
AAATACACAAATTCTTTCTTCTTTTT
Found at i:102841985 original size:28 final size:26
Alignment explanation
Indices: 102841952--102842021 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 26
102841942 GATTTTATAA
102841952 AAATATTTATTTTATATATATATATAT
1 AAATATTTATTTTATATATATATAT-T
*
102841979 ATAATATTTATTATT-TATCTATATATT
1 A-AATATTTATT-TTATATATATATATT
*
102842006 AAATATAT-TTTTATAT
1 AAATATTTATTTTATAT
102842022 CTTAGTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
24 2 0.05
25 5 0.13
26 6 0.16
27 3 0.08
28 20 0.53
29 2 0.05
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (26 bp):
AAATATTTATTTTATATATATATATT
Found at i:102842060 original size:12 final size:10
Alignment explanation
Indices: 102841958--102842052 Score: 67
Period size: 10 Copynumber: 9.6 Consensus size: 10
102841948 ATAAAAATAT
*
102841958 TTATTTTATA
1 TTATATTATA
102841968 TATATATATATA
1 T-TATAT-TATA
*
102841980 TAATATT-TA
1 TTATATTATA
*
102841989 TTAT-TTATC
1 TTATATTATA
102841998 TATATATTA-A
1 T-TATATTATA
*
102842008 ATATATT-T-
1 TTATATTATA
102842016 TTATATCT-TA
1 TTATAT-TATA
102842026 GTTATATTATA
1 -TTATATTATA
102842037 TTATATTATA
1 TTATATTATA
102842047 TTATAT
1 TTATAT
102842053 GTTATATTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
8 7 0.10
9 15 0.22
10 22 0.32
11 19 0.28
12 5 0.07
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (10 bp):
TTATATTATA
Found at i:102842146 original size:17 final size:17
Alignment explanation
Indices: 102842124--102842162 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
102842114 CTGACTTCAT
*
102842124 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
102842141 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
102842158 TTTTA
1 TTTTA
102842163 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:102843595 original size:26 final size:26
Alignment explanation
Indices: 102843564--102843617 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
102843554 TAATTTATAG
* * *
102843564 TGACTAGATTTAAAGTCGTCACTTGT
1 TGACTAAATTTAAAATCATCACTTGT
102843590 TGACTAAATTTAAAATCATCACTTGT
1 TGACTAAATTTAAAATCATCACTTGT
102843616 TG
1 TG
102843618 TTTTAAATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (26 bp):
TGACTAAATTTAAAATCATCACTTGT
Found at i:102847538 original size:29 final size:31
Alignment explanation
Indices: 102847506--102847569 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
102847496 GATATTTAAT
102847506 AATAAA-TT-TAA-AAT-ATAATATATAATAAA
1 AATAAATTTATAAGAATAATAAT-TAT-ATAAA
*
102847535 AATATATTTATAAGAATAATAATTATATAAA
1 AATAAATTTATAAGAATAATAATTATATAAA
102847566 AATA
1 AATA
102847570 TAAAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 5 0.17
30 2 0.07
31 12 0.40
32 6 0.20
33 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (31 bp):
AATAAATTTATAAGAATAATAATTATATAAA
Found at i:102847546 original size:17 final size:17
Alignment explanation
Indices: 102847515--102847571 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
102847505 TAATAAATTT
*
102847515 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
102847533 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
102847550 ATAATA-A-TTAT-ATA
1 AAAATATATTTATAATA
102847564 AAAATATA
1 AAAATATA
102847572 AAATATATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:102848109 original size:17 final size:18
Alignment explanation
Indices: 102848056--102848233 Score: 256
Period size: 17 Copynumber: 9.9 Consensus size: 18
102848046 AATCATATCT
*
102848056 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
102848075 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
102848093 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
102848110 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
102848128 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
102848145 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
102848162 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
102848180 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
102848197 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
102848216 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
102848234 TGAAGATTAT
Statistics
Matches: 146, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
17 65 0.45
18 48 0.33
19 33 0.23
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:102848114 original size:35 final size:36
Alignment explanation
Indices: 102848056--102848233 Score: 258
Period size: 35 Copynumber: 5.0 Consensus size: 36
102848046 AATCATATCT
102848056 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
102848093 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
102848128 TCTAAGATTG-TATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
102848162 TCTAAGATTGCA-ATCATATCTAAGATTG-TATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
*
102848197 TCTAAGATTGCATATCACATCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCATATCTAAGATTGCA-ATCAT
102848234 TGAAGATTAT
Statistics
Matches: 133, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
34 16 0.12
35 87 0.65
36 15 0.11
37 10 0.08
38 5 0.04
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:102848154 original size:52 final size:53
Alignment explanation
Indices: 102848056--102848233 Score: 288
Period size: 52 Copynumber: 3.3 Consensus size: 53
102848046 AATCATATCT
* *
102848056 TCTAAGATTGTATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTG-TATCATATCTAAGATTGTATCATA
102848110 TCTAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
*
102848162 TCTAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG--TATCATA
102848216 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
102848234 TGAAGATTAT
Statistics
Matches: 118, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
52 68 0.58
53 16 0.14
54 29 0.25
55 5 0.04
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (53 bp):
TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
Found at i:102849408 original size:119 final size:119
Alignment explanation
Indices: 102848838--102849590 Score: 1204
Period size: 119 Copynumber: 6.3 Consensus size: 119
102848828 CTGGAGTCTG
* * **
102848838 TTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGT
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * * *
102848903 CAAATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATG
66 CAAATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
* *
102848958 TGTCTGAGAATATTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
1 T-T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
* *
102849023 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATTTGAAGTTTAGATTTGCTATA
64 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
*
102849079 TGTCTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACATAAGAAT
1 T-T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
102849144 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
64 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
* * * *
102849200 TCTGAGAACGTCTGAGAGTCAAAATCTGTTATGTCCTCGATTTGTTCATTGTAAACACAAGAATA
1 TTTGAGAACATCTGAGAGTC-AAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATA
*
102849265 CCAAATCATCTTGGATTTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
65 CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
102849320 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
102849385 CAAATCATATTGGATCTGTTTCAGTATAAACATCTGAAAG-CTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTTAGATCTGCTATA
102849439 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
102849504 CAAATCATCTTGGATCTGTTTCAGTATAAACATATGAAAG-CTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTTAGATCTGCTATA
102849558 TTTGAGAACATCTGAGAGTCAAATCTGCTATGT
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGT
102849591 TCAACTTGTT
Statistics
Matches: 596, Mismatches: 33, Indels: 9
0.93 0.05 0.01
Matches are distributed among these distances:
119 256 0.43
120 117 0.20
121 150 0.25
122 73 0.12
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (119 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
Found at i:102849534 original size:358 final size:362
Alignment explanation
Indices: 102848840--102849590 Score: 1230
Period size: 358 Copynumber: 2.1 Consensus size: 362
102848830 GGAGTCTGTT
* **
102848840 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGTCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
* *
102848905 AATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTCTGAGAATA
66 AATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATGTCTGAGAACA
* *
102848970 TTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
131 TCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATAT
* * *
102849035 TGGATCTGCTTCAGTATAAACATTTGAAGTTTAGATTTGCTATATGTCTGAGAACATCTGAGAGT
196 TGGATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTATATGTCTGAGAACATCTGAGAGT
*
102849100 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACATAAGAATACCAAATCATCTTGGATCTGC
261 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGC
* *
102849165 TTCAGTATAAACATCTG-AAGTTTAGATCTGCTATATC
326 TTCAGTATAAACATATGAAAG-CTAGATCTGCTATATC
* *
102849202 TGAGAACGTCTGAGAGTCAAAATCTGTTATGTCCTCGATTTG-TTCATTGTAAACACAAGAATAC
1 TGAGAACATCTGAGAGTC-AAATCTGCTATGTCCTCGATTTGTTTC-TTGTAAACACAAGAATAC
* *
102849266 CAAATCATCTTGGATTT-GCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATAT-T-TGAGAA
64 CAAATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATGTCTGAGAA
102849328 CATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCAT
129 CATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCAT
*
102849393 ATTGGATCTGTTTCAGTATAAACATCTGAAAG-CTAGATCTGCTATAT-T-TGAGAACATCTGAG
194 ATTGGATCTGCTTCAGTATAAACATCTG-AAGTCTAGATCTGCTATATGTCTGAGAACATCTGAG
102849455 AGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATC
258 AGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATC
* *
102849520 TGTTTCAGTATAAACATATGAAAGCTAGATCTGCTATATT
323 TGCTTCAGTATAAACATATGAAAGCTAGATCTGCTATATC
102849560 TGAGAACATCTGAGAGTCAAATCTGCTATGT
1 TGAGAACATCTGAGAGTCAAATCTGCTATGT
102849591 TCAACTTGTT
Statistics
Matches: 363, Mismatches: 22, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
357 12 0.03
358 127 0.35
359 4 0.01
360 107 0.29
361 4 0.01
362 55 0.15
363 54 0.15
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (362 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
AATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATATGTCTGAGAACA
TCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATAT
TGGATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTATATGTCTGAGAACATCTGAGAGT
CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGC
TTCAGTATAAACATATGAAAGCTAGATCTGCTATATC
Found at i:102849672 original size:358 final size:359
Alignment explanation
Indices: 102848840--102849676 Score: 1077
Period size: 358 Copynumber: 2.3 Consensus size: 359
102848830 GGAGTCTGTT
* * * * * **
102848840 TGAGAACATCTGAGAGTC-AAATCTACTATGTCCTCGATTTGTTTC-TTGTAAACACAAGAATGT
1 TGAGAACATCTGAGAGTCAAAATCTGCTATGT-CTCAACTTG-TTCACTATAAACACAAGAATAC
* * * * * *
102848903 CAAATCATCTTGGATTTGGCTTCAGTATAAACATCTGAAGGTT-AGATCTGCCATGTGTCTGAGA
64 CAAATAATCTTCGATCT-GCTTCAGTATAAACATCGGAA-GTTCAGATCTGCTATAT-T-TGAGA
* *
102848967 ATATTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCA
125 ACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCA
* * * *
102849032 TCTTGGATCTGCTTCAGTATAAACATTTGAAGTTTAGATTTGCTATATGTCTGAGAACATCTGAG
190 TATTGGATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTATATGTCTGAGAACATCTGAG
*
102849097 AGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACATAAGAATACCAAATCATCTTGGATC
255 AGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATC
* *
102849162 TGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATC
320 TGCTTCAGTATAAACATATGAAGTCTAGATCTGCTATATC
* * * * * *
102849202 TGAGAACGTCTGAGAGTCAAAATCTGTTATGTCCTCGATTTGTTCATTGTAAACACAAGAATACC
1 TGAGAACATCTGAGAGTCAAAATCTGCTATGT-CTCAACTTGTTCACTATAAACACAAGAATACC
* * * * *
102849267 AAATCATCTTGGATTTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATATTTGAGAACATC
65 AAATAATCTTCGATCTGCTTCAGTATAAACATCGGAAGTTCAGATCTGCTATATTTGAGAACATC
102849332 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATATTG
130 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATATTG
*
102849397 GATCTGTTTCAGTATAAACATCTGAAAG-CTAGATCTGCTATAT-T-TGAGAACATCTGAGAGTC
195 GATCTGCTTCAGTATAAACATCTG-AAGTCTAGATCTGCTATATGTCTGAGAACATCTGAGAGTC
*
102849459 AAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGTT
259 AAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCT
*
102849524 TCAGTATAAACATATGAAAG-CTAGATCTGCTATATT
324 TCAGTATAAACATATG-AAGTCTAGATCTGCTATATC
* * * *
102849560 TGAGAACATCTGAGAGTC-AAATCTGCTATGT-TCAACTTGTTCCCTATAAACACAGGGATGCCA
1 TGAGAACATCTGAGAGTCAAAATCTGCTATGTCTCAACTTGTTCACTATAAACACAAGAATACCA
* *
102849623 TACTGAAATCTTCGATCTGCTTC-GCTATAAGCA-CAGGAA-TGTCAGATCTGCTAT
66 -AAT--AATCTTCGATCTGCTTCAG-TATAAACATC-GGAAGT-TCAGATCTGCTAT
102849677 CTTCGATCTG
Statistics
Matches: 428, Mismatches: 36, Indels: 26
0.87 0.07 0.05
Matches are distributed among these distances:
355 24 0.06
356 2 0.00
357 15 0.04
358 163 0.38
359 4 0.01
360 107 0.25
361 7 0.02
362 52 0.12
363 54 0.13
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (359 bp):
TGAGAACATCTGAGAGTCAAAATCTGCTATGTCTCAACTTGTTCACTATAAACACAAGAATACCA
AATAATCTTCGATCTGCTTCAGTATAAACATCGGAAGTTCAGATCTGCTATATTTGAGAACATCT
GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATATTGG
ATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTATATGTCTGAGAACATCTGAGAGTCAA
ATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTC
AGTATAAACATATGAAGTCTAGATCTGCTATATC
Found at i:102849695 original size:44 final size:44
Alignment explanation
Indices: 102849575--102849715 Score: 142
Period size: 44 Copynumber: 3.2 Consensus size: 44
102849565 ACATCTGAGA
* * *
102849575 GTCAAATCTGCTATGTTC-AACTTGTTCCCTATAAACACAGGGAT
1 GTCAAATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGAAT
* * ** * *
102849619 GCCATA-CTGAAATCTTCGATCTGCTTCGCTATAAGCACAGGAAT
1 GTCAAATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGAAT
* *
102849663 GTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
1 GTCAAATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGAAT
*
102849707 GCCAAATCT
1 GTCAAATCT
102849716 TGTTTCTTTG
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
43 10 0.13
44 51 0.67
45 15 0.20
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
GTCAAATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGAAT
Found at i:102849729 original size:44 final size:44
Alignment explanation
Indices: 102849597--102849715 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 44
102849587 ATGTTCAACT
* *
102849597 TGTTCCCTATAAACACAGGGATGCCATA-CTGAAATCTTCGATC
1 TGTTCCCTATAAACACAGGGATGCCAAATCTGATATCTTCGATC
* * * * * *
102849640 TGCTTCGCTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATC
1 TG-TTCCCTATAAACACAGGGATGCCAAATCTGATATCTTCGATC
102849685 TGTTCCCTATAAACACAGGGATGCCAAATCT
1 TGTTCCCTATAAACACAGGGATGCCAAATCT
102849716 TGTTTCTTTG
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
43 2 0.03
44 45 0.73
45 15 0.24
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
TGTTCCCTATAAACACAGGGATGCCAAATCTGATATCTTCGATC
Found at i:102850613 original size:1 final size:1
Alignment explanation
Indices: 102850607--102850655 Score: 89
Period size: 1 Copynumber: 49.0 Consensus size: 1
102850597 GGCCTCTCCA
*
102850607 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
102850656 GAAATAGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.02, C:0.00, G:0.00, T:0.98
Consensus pattern (1 bp):
T
Found at i:102856587 original size:17 final size:17
Alignment explanation
Indices: 102856556--102856613 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
102856546 TAATAAATTT
*
102856556 AAAATATAATATATAAAA
1 AAAATAT-ATTTATAAAA
*
102856574 AAAATATATTTATAAGA
1 AAAATATATTTATAAAA
* *
102856591 ATAATA-A-TTATATAA
1 AAAATATATTTATAAAA
102856606 AAAATATA
1 AAAATATA
102856614 AAATATATTG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 11 0.33
16 2 0.06
17 13 0.39
18 7 0.21
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATATTTATAAAA
Found at i:102856614 original size:17 final size:17
Alignment explanation
Indices: 102856556--102856614 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 17
102856546 TAATAAATTT
102856556 AAAATATAA-TATATAA
1 AAAATATAATTATATAA
*
102856572 AAAAAATATATT-TAT-A
1 AAAATATA-ATTATATAA
*
102856588 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
102856606 AAAATATAA
1 AAAATATAA
102856615 AATATATTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
16 14 0.41
17 14 0.41
18 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:102857121 original size:19 final size:19
Alignment explanation
Indices: 102857097--102857187 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
102857087 AATCATATCT
*
102857097 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
102857116 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
102857134 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
102857151 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
102857170 TCTAAGATTGTATATCAT
1 TCTAAGATTGCATATCAT
102857188 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 33 0.51
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:102857155 original size:35 final size:36
Alignment explanation
Indices: 102857097--102857182 Score: 138
Period size: 35 Copynumber: 2.4 Consensus size: 36
102857087 AATCATATCT
*
102857097 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCATATCACA
102857134 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
102857170 TCTAAGATTGTAT
1 TCTAAGATTGTAT
102857183 ATCATTGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
35 19 0.40
36 18 0.38
37 10 0.21
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:102857166 original size:14 final size:15
Alignment explanation
Indices: 102857111--102857166 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
102857101 AGATTGTATA
102857111 TCATATCTAAGATTG
1 TCATATCTAAGATTG
102857126 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
102857144 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
102857161 -CATATC
1 TCATATC
102857167 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:102862411 original size:18 final size:18
Alignment explanation
Indices: 102862390--102862456 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
102862380 AGAAGGATAT
102862390 TTTAGATTTTTCATAGAG
1 TTTAGATTTTTCATAGAG
* * * *
102862408 TTTATATTTATACTTAGAATAT
1 TTTAGATTT-TTCATAG---AG
102862430 TTTAGATTTTTCATAGAG
1 TTTAGATTTTTCATAGAG
*
102862448 TTTATATTT
1 TTTAGATTT
102862457 ATACCTTAGA
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
18 17 0.47
19 5 0.14
21 5 0.14
22 9 0.25
ACGTcount: A:0.30, C:0.04, G:0.10, T:0.55
Consensus pattern (18 bp):
TTTAGATTTTTCATAGAG
Found at i:102862441 original size:40 final size:41
Alignment explanation
Indices: 102862386--102862468 Score: 159
Period size: 40 Copynumber: 2.0 Consensus size: 41
102862376 CATAAGAAGG
102862386 ATATTTTAGATTTTTCATAGAGTTTATATTTATA-CTTAGA
1 ATATTTTAGATTTTTCATAGAGTTTATATTTATACCTTAGA
102862426 ATATTTTAGATTTTTCATAGAGTTTATATTTATACCTTAGA
1 ATATTTTAGATTTTTCATAGAGTTTATATTTATACCTTAGA
102862467 AT
1 AT
102862469 TTAAAATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 34 0.81
41 8 0.19
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.52
Consensus pattern (41 bp):
ATATTTTAGATTTTTCATAGAGTTTATATTTATACCTTAGA
Found at i:102866546 original size:25 final size:25
Alignment explanation
Indices: 102866512--102866564 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
102866502 TCCTTTAGAA
102866512 GTTTGATAGATGAATGCATTCATGG
1 GTTTGATAGATGAATGCATTCATGG
102866537 GTTTGATAGATGAATGCATTCATGG
1 GTTTGATAGATGAATGCATTCATGG
102866562 GTT
1 GTT
102866565 CAACAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.08, G:0.28, T:0.38
Consensus pattern (25 bp):
GTTTGATAGATGAATGCATTCATGG
Found at i:102868671 original size:24 final size:24
Alignment explanation
Indices: 102868643--102868694 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
102868633 TTTCTAGAAG
* *
102868643 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
102868667 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
102868691 ATTT
1 ATTT
102868695 GACCTACTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:102872558 original size:18 final size:19
Alignment explanation
Indices: 102872525--102872561 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
102872515 ACTCTTATTT
*
102872525 TATTTTAATATATTATATA
1 TATTTTAAAATATTATATA
102872544 TATTTTAAAAT-TTATATA
1 TATTTTAAAATATTATATA
102872562 ATGAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTTAAAATATTATATA
Found at i:102879165 original size:50 final size:50
Alignment explanation
Indices: 102879106--102879205 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
102879096 GAGACCAAAT
102879106 TGAAATTTAAACATTCTTATAATCTAAAAAGTGAAGGGGTTGAAATTGAA
1 TGAAATTTAAACATTCTTATAATCTAAAAAGTGAAGGGGTTGAAATTGAA
102879156 TGAAATTTAAACATTCTTATAATCTAAAAAGTGAAGGGGTTGAAATTGAA
1 TGAAATTTAAACATTCTTATAATCTAAAAAGTGAAGGGGTTGAAATTGAA
102879206 ATTTATCCAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (50 bp):
TGAAATTTAAACATTCTTATAATCTAAAAAGTGAAGGGGTTGAAATTGAA
Found at i:102886785 original size:23 final size:22
Alignment explanation
Indices: 102886740--102886810 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 22
102886730 ATCTCCTAGA
*
102886740 AAATAATATATTAAAATAGATT
1 AAATAATATATTAAAATAAATT
* *
102886762 AAATAATATTTTTAACATAAATT
1 AAATAATA-TATTAAAATAAATT
*
102886785 AAA-ACA-A-ATTAAAATAAAGT
1 AAATA-ATATATTAAAATAAATT
102886805 AAATAA
1 AAATAA
102886811 ATTTGGGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 14 0.35
21 1 0.03
22 10 0.25
23 15 0.38
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (22 bp):
AAATAATATATTAAAATAAATT
Found at i:102892487 original size:28 final size:28
Alignment explanation
Indices: 102892455--102892583 Score: 97
Period size: 28 Copynumber: 4.5 Consensus size: 28
102892445 GAATGTAAAA
*
102892455 ATTA-TTATATATATTATTTTTATTTTAT
1 ATTATTTAT-TATATTATTTATATTTTAT
102892483 ATTATTTATTATATTATTTATATTTTATT
1 ATTATTTATTATATTATTTATATTTTA-T
* *
102892512 ATAAATTTTGATT-TATACATTT-TATTATATAT
1 AT-TA-TTT-ATTATAT-TATTTATATT-T-TAT
* *
102892544 ATTATTCATTATATT-TTT-TATTTTTT
1 ATTATTTATTATATTATTTATATTTTAT
*
102892570 ATTATATATTATAT
1 ATTATTTATTATAT
102892584 AATTATTTAC
Statistics
Matches: 83, Mismatches: 9, Indels: 20
0.74 0.08 0.18
Matches are distributed among these distances:
26 14 0.17
27 1 0.01
28 28 0.34
29 10 0.12
30 6 0.07
31 11 0.13
32 11 0.13
33 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (28 bp):
ATTATTTATTATATTATTTATATTTTAT
Found at i:102892492 original size:7 final size:7
Alignment explanation
Indices: 102892455--102892604 Score: 57
Period size: 7 Copynumber: 20.9 Consensus size: 7
102892445 GAATGTAAAA
102892455 ATTA-TT
1 ATTATTT
102892461 ATATATATT
1 AT-TAT-TT
102892470 ATT-TTT
1 ATTATTT
102892476 ATT-TTAT
1 ATTATT-T
102892483 ATTATTT
1 ATTATTT
102892490 ATTA--T
1 ATTATTT
102892495 ATTATTT
1 ATTATTT
102892502 A-TATTTT
1 ATTA-TTT
102892509 ATTATAAATT
1 ATTAT---TT
102892519 -TTGATTT
1 ATT-ATTT
*
102892526 ATACATTTT
1 AT-TA-TTT
*
102892535 ATTATAT
1 ATTATTT
102892542 A-TA-TT
1 ATTATTT
102892547 ATTCATTAT
1 ATT-ATT-T
*
102892556 ATTTTTT
1 ATTATTT
*
102892563 ATTTTTT
1 ATTATTT
*
102892570 ATTATAT
1 ATTATTT
*
102892577 ATTATATA
1 ATTAT-TT
102892585 ATTATTT
1 ATTATTT
*
102892592 ACTATTT
1 ATTATTT
102892599 ATTATT
1 ATTATT
102892605 ATGTATAATT
Statistics
Matches: 111, Mismatches: 12, Indels: 41
0.68 0.07 0.25
Matches are distributed among these distances:
5 7 0.06
6 14 0.13
7 55 0.50
8 16 0.14
9 15 0.14
10 4 0.04
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (7 bp):
ATTATTT
Found at i:102892492 original size:23 final size:22
Alignment explanation
Indices: 102892457--102892604 Score: 82
Period size: 21 Copynumber: 6.9 Consensus size: 22
102892447 ATGTAAAAAT
*
102892457 TATTATATATATTATTTTTATTTTA
1 TATTAT-T-TATTATTATTA-TTTA
102892482 TATTATTTATTA-TATTATTTA
1 TATTATTTATTATTATTATTTA
* *
102892503 TA-T-TTTATTATAAATT-TTGA
1 TATTATTTATTAT-TATTATTTA
** *
102892523 T-TTATACATT-TTATTATATA
1 TATTATTTATTATTATTATTTA
*
102892543 TATTATTCATTA-TATT-TTT-
1 TATTATTTATTATTATTATTTA
* *
102892562 TATTTTTTATTATATATTATATA
1 TATTATTTATTAT-TATTATTTA
*
102892585 -ATTATTTACTATTTATTATT
1 TATTATTTATTA-TTATTATT
102892605 ATGTATAATT
Statistics
Matches: 95, Mismatches: 16, Indels: 27
0.69 0.12 0.20
Matches are distributed among these distances:
19 20 0.21
20 12 0.13
21 29 0.31
22 21 0.22
23 6 0.06
24 1 0.01
25 6 0.06
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (22 bp):
TATTATTTATTATTATTATTTA
Found at i:102892584 original size:28 final size:28
Alignment explanation
Indices: 102892456--102892616 Score: 88
Period size: 29 Copynumber: 5.8 Consensus size: 28
102892446 AATGTAAAAA
102892456 TTATTATATA-TAT-TA-TTTTTATTTT
1 TTATTATATATTATATATTTTTTATTTT
* * * *
102892481 ATATTATTTA-T-TATATTATTTATATT
1 TTATTATATATTATATATTTTTTATTTT
* **
102892507 TTATTATAAATT-T-TGATTTATACATTTT
1 TTATTATATATTATAT-ATTT-TTTATTTT
102892535 ATTATATATATTATTCATTATATTTTTTATTTT
1 -TTAT-TATA-TATT-A-TATATTTTTTATTTT
* * *
102892568 TTATTATATATTATATAATTATTTACTAT
1 TTATTATATATTATAT-ATTTTTTATTTT
102892597 TTATTAT-TATGTATA-ATTTT
1 TTATTATATAT-TATATATTTT
102892617 AAAATTTTTT
Statistics
Matches: 104, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
24 1 0.01
25 11 0.11
26 16 0.15
27 9 0.09
28 11 0.11
29 25 0.24
30 8 0.08
31 7 0.07
32 4 0.04
33 6 0.06
34 5 0.05
35 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (28 bp):
TTATTATATATTATATATTTTTTATTTT
Found at i:102892977 original size:18 final size:18
Alignment explanation
Indices: 102892954--102892988 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102892944 ATCTCATAAA
*
102892954 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
102892972 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
102892989 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:102895140 original size:18 final size:19
Alignment explanation
Indices: 102895117--102895154 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
102895107 TTTATTAGGT
102895117 GAAAATGGAGAAGAA-AAA
1 GAAAATGGAGAAGAATAAA
*
102895135 GAAAATGGGGAAGAATAAA
1 GAAAATGGAGAAGAATAAA
102895154 G
1 G
102895155 GGAATGAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.61, C:0.00, G:0.32, T:0.08
Consensus pattern (19 bp):
GAAAATGGAGAAGAATAAA
Found at i:102899732 original size:16 final size:17
Alignment explanation
Indices: 102899709--102899745 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
102899699 AAAATAAAAT
102899709 AAAA-TTACATT-ATAA
1 AAAATTTACATTAATAA
102899724 AAAATTTACATTAATAA
1 AAAATTTACATTAATAA
102899741 AAAAT
1 AAAAT
102899746 CACAAAACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 9 0.45
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATTTACATTAATAA
Found at i:102899831 original size:104 final size:102
Alignment explanation
Indices: 102899699--102899964 Score: 340
Period size: 102 Copynumber: 2.6 Consensus size: 102
102899689 CAAATAAATA
* ** * * *
102899699 AAAATAA-AATAAAATTACATTATAAAAAATTTACATTAATAAAAAATCACAAAACACTAAACTA
1 AAAATAACTATAAAATTATTTTA-AAAAAAATTAAATTATTAAAAAATCACAAAACACTAAACTA
*
102899763 AACACTAACAATTTATATAACCTAATAATAAATTGCTAAC
65 AACACTAACAATTTATA-AA-CTAATAATAAATTACTAAC
102899803 AAAATAACTATAAAATTATTTTAAAAAAAATTAAATTATTAAAAAATCACAAAAC-CATAAACTA
1 AAAATAACTATAAAATTATTTTAAAAAAAATTAAATTATTAAAAAATCACAAAACAC-TAAACTA
* *
102899867 AACACTAACAATTTGTAAACTAATCATAAATTACTAAC
65 AACACTAACAATTTATAAACTAATAATAAATTACTAAC
* ** * *
102899905 AAAATAACTATAACATT-TTTTAAAAACAAATTAGGTTATTGATAAATCACAAAACACTAA
1 AAAATAACTATAAAATTATTTTAAAAA-AAATTAAATTATTAAAAAATCACAAAACACTAA
102899965 CAATTTAAAA
Statistics
Matches: 144, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
101 9 0.06
102 60 0.42
103 4 0.03
104 59 0.41
105 12 0.08
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (102 bp):
AAAATAACTATAAAATTATTTTAAAAAAAATTAAATTATTAAAAAATCACAAAACACTAAACTAA
ACACTAACAATTTATAAACTAATAATAAATTACTAAC
Found at i:102900115 original size:76 final size:78
Alignment explanation
Indices: 102900023--102900182 Score: 211
Period size: 80 Copynumber: 2.1 Consensus size: 78
102900013 TTTTTTAAAA
* * *
102900023 TTTACATTACTAAAAAATCACAAAA-A-ATA-AAACATTAACAATTTATAACCTAATCATAAATT
1 TTTACATTACTAAAAAATCACAAAATACAAACAAACA-CAACAATTTATAACATAATCATAAATT
102900085 ACTAACAAAATAAT
65 ACTAACAAAATAAT
* *
102900099 TTTACATTAAC-AAAAAATCACAAAATACTAAACTAAACACAACAATTTATAACATAATCCTCAA
1 TTTACATT-ACTAAAAAATCACAAAATAC-AAAC-AAACACAACAATTTATAACATAATCATAAA
102900163 TTACTAACAAAATAAT
63 TTACTAACAAAATAAT
102900179 TTTA
1 TTTA
102900183 AAATAATTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
76 22 0.30
77 3 0.04
79 2 0.03
80 41 0.56
81 5 0.07
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (78 bp):
TTTACATTACTAAAAAATCACAAAATACAAACAAACACAACAATTTATAACATAATCATAAATTA
CTAACAAAATAAT
Found at i:102903258 original size:4 final size:4
Alignment explanation
Indices: 102903249--102903279 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
102903239 GCATTGCCTT
102903249 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
102903280 CTTTATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:102907541 original size:17 final size:17
Alignment explanation
Indices: 102907486--102907543 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
102907476 TTAACCTATT
*
102907486 ATTACTTAATAAAATAA
1 ATTATTTAATAAAATAA
* **
102907503 ATT-TTATAAATAACATTT
1 ATTATT-T-AATAAAATAA
102907521 ATTATTTAATAAAATAA
1 ATTATTTAATAAAATAA
102907538 ATTATT
1 ATTATT
102907544 GAAATTTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
16 1 0.03
17 17 0.55
18 11 0.35
19 2 0.06
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTATTTAATAAAATAA
Found at i:102920489 original size:12 final size:12
Alignment explanation
Indices: 102920472--102920496 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102920462 AGAACTTTTG
102920472 ATTTCTAAGTGA
1 ATTTCTAAGTGA
102920484 ATTTCTAAGTGA
1 ATTTCTAAGTGA
102920496 A
1 A
102920497 ATCAAGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ATTTCTAAGTGA
Found at i:102920829 original size:14 final size:15
Alignment explanation
Indices: 102920795--102920832 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
102920785 GGTTTTTGTA
102920795 ATAATAAAATAAAAG
1 ATAATAAAATAAAAG
* *
102920810 ATAATAACATAAAGG
1 ATAATAAAATAAAAG
102920825 A-AATAAAA
1 ATAATAAAA
102920833 GTTCAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (15 bp):
ATAATAAAATAAAAG
Found at i:102923652 original size:24 final size:24
Alignment explanation
Indices: 102923620--102923675 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
102923610 TGTGTAGGAG
102923620 AGGCCACTTAGAGTGGTCCAGTGT
1 AGGCCACTTAGAGTGGTCCAGTGT
102923644 AGGCCACTTAGAGTGGTCCAGTGT
1 AGGCCACTTAGAGTGGTCCAGTGT
102923668 AGGCCACT
1 AGGCCACT
102923676 ATTACCCATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.23
Consensus pattern (24 bp):
AGGCCACTTAGAGTGGTCCAGTGT
Found at i:102925929 original size:24 final size:24
Alignment explanation
Indices: 102925894--102925956 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
102925884 TTATATACAG
102925894 ATAA-CAGACATGCATCTAGCATA
1 ATAATCAGACATGCATCTAGCATA
102925917 ATAATCAGACATGCATCTAGCATA
1 ATAATCAGACATGCATCTAGCATA
102925941 ATAATCAGACATGCAT
1 ATAATCAGACATGCAT
102925957 AGCATTAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
23 4 0.10
24 35 0.90
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.24
Consensus pattern (24 bp):
ATAATCAGACATGCATCTAGCATA
Found at i:102934656 original size:2 final size:2
Alignment explanation
Indices: 102934649--102934674 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
102934639 ATATCACATT
102934649 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
102934675 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:102935231 original size:20 final size:21
Alignment explanation
Indices: 102935208--102935252 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
102935198 AATTATTTAT
*
102935208 TTAATAAATATCT-TTTATAA
1 TTAATAAATATCTATTAATAA
102935228 TTAATAAATATCTATTAATAA
1 TTAATAAATATCTATTAATAA
102935249 TTAA
1 TTAA
102935253 ATACATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATAAATATCTATTAATAA
Found at i:102938373 original size:2 final size:2
Alignment explanation
Indices: 102938356--102938428 Score: 69
Period size: 2 Copynumber: 42.0 Consensus size: 2
102938346 AATAATTAAG
102938356 TA TA T- TA TA T- TA TA TA TA TA T- TA TA T- TA TA T- TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102938392 TA TA T- TA TA T- TA TA T- TA TA T- TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102938429 AAAGAAACAA
Statistics
Matches: 60, Mismatches: 0, Indels: 22
0.73 0.00 0.27
Matches are distributed among these distances:
1 11 0.18
2 49 0.82
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (2 bp):
TA
Found at i:102938423 original size:5 final size:5
Alignment explanation
Indices: 102938356--102938416 Score: 113
Period size: 5 Copynumber: 12.0 Consensus size: 5
102938346 AATAATTAAG
102938356 TATAT TATAT TATAT ATATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT
102938407 TATAT TATAT
1 TATAT TATAT
102938417 ATTATATATA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 50 0.91
6 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:102940073 original size:48 final size:48
Alignment explanation
Indices: 102940017--102940136 Score: 240
Period size: 48 Copynumber: 2.5 Consensus size: 48
102940007 TAGTCCGAGC
102940017 TTTGTTAATAGGGTAAATAATTGAAATGAAATTTTGAAAATGAGATTA
1 TTTGTTAATAGGGTAAATAATTGAAATGAAATTTTGAAAATGAGATTA
102940065 TTTGTTAATAGGGTAAATAATTGAAATGAAATTTTGAAAATGAGATTA
1 TTTGTTAATAGGGTAAATAATTGAAATGAAATTTTGAAAATGAGATTA
102940113 TTTGTTAATAGGGTAAATAATTGA
1 TTTGTTAATAGGGTAAATAATTGA
102940137 TGTTTGTAAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.38
Consensus pattern (48 bp):
TTTGTTAATAGGGTAAATAATTGAAATGAAATTTTGAAAATGAGATTA
Found at i:102943688 original size:26 final size:26
Alignment explanation
Indices: 102943651--102943791 Score: 210
Period size: 26 Copynumber: 5.2 Consensus size: 26
102943641 TGATACAAAT
* *
102943651 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102943677 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
102943703 TGATAATAGGTTAGGTTAGGTAAATGTTCCA
1 TGATAAT--G---GGTTAGGTAAATGTTTCA
102943734 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102943760 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102943786 TGATAA
1 TGATAA
102943792 GAATATCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
26 80 0.75
28 1 0.01
29 1 0.01
31 24 0.23
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:102943729 original size:57 final size:57
Alignment explanation
Indices: 102943657--102943775 Score: 229
Period size: 57 Copynumber: 2.1 Consensus size: 57
102943647 AAATTGATAA
102943657 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
*
102943714 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
102943771 TAGGT
1 TAGGT
102943776 AAATGTTTCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (57 bp):
TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
Found at i:102945307 original size:25 final size:26
Alignment explanation
Indices: 102945266--102945317 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
102945256 AATTACTGTT
102945266 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
102945291 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
102945317 T
1 T
102945318 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Done.