Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 332 of 410
Found at i:102945808 original size:135 final size:135
Alignment explanation
Indices: 102945565--102945836 Score: 528
Period size: 135 Copynumber: 2.0 Consensus size: 135
102945555 GAGTAGTCTC
102945565 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
102945630 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCAGTACCA
102945695 CTGTTA
130 CTGTTA
102945701 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATG-ATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
102945765 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCAC
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCAC
102945830 TGTTA
131 TGTTA
102945835 CC
1 CC
102945837 TGAAGCCCAA
Statistics
Matches: 136, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
134 17 0.12
135 83 0.61
136 36 0.26
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCAC
TGTTA
Found at i:102950339 original size:26 final size:26
Alignment explanation
Indices: 102950302--102950437 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
102950292 TGATACAAAT
* *
102950302 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102950328 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
102950354 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102950380 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102950406 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
102950432 TGATAA
1 TGATAA
102950438 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:102952461 original size:136 final size:136
Alignment explanation
Indices: 102952217--102952490 Score: 521
Period size: 136 Copynumber: 2.0 Consensus size: 136
102952207 GAGTAGTCTC
* *
102952217 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGGATTTTGAAATAGGCCTATGGGCCATACT
102952282 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
102952347 CTGTTA
131 CTGTTA
102952353 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGGATTTTGAAATAGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGGATTTTGAAATAGGCCTATGGGCCATACT
*
102952418 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
102952483 CTGTTA
131 CTGTTA
102952489 CC
1 CC
102952491 TGAAGCCCAA
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGGATTTTGAAATAGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:102953620 original size:2 final size:2
Alignment explanation
Indices: 102953613--102953650 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
102953603 ATATCACATT
102953613 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
102953651 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:102954024 original size:2 final size:2
Alignment explanation
Indices: 102954017--102954046 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
102954007 TTATTTGCTT
102954017 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102954047 ATAACTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:102954217 original size:20 final size:21
Alignment explanation
Indices: 102954194--102954238 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
102954184 AATTATTTAT
*
102954194 TTAATAAATATCT-TTTATAA
1 TTAATAAATATCTATTAATAA
102954214 TTAATAAATATCTATTAATAA
1 TTAATAAATATCTATTAATAA
102954235 TTAA
1 TTAA
102954239 ATACATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATAAATATCTATTAATAA
Found at i:102959667 original size:22 final size:22
Alignment explanation
Indices: 102959607--102959677 Score: 56
Period size: 27 Copynumber: 3.0 Consensus size: 22
102959597 TTGAACTATC
102959607 TTTATTTTTATT-TGT-TTTTAT
1 TTTA-TTTTATTATGTATTTTAT
102959628 TTTATTTTCCAAACTTATGTATTTTAT
1 TTTATTTT----A-TTATGTATTTTAT
* *
102959655 TTTATTTTATTATGCACTTTAT
1 TTTATTTTATTATGTATTTTAT
102959677 T
1 T
102959678 GTTTTTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
20 4 0.10
21 4 0.10
22 12 0.29
23 1 0.02
24 1 0.02
25 2 0.05
26 3 0.07
27 14 0.34
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTATTTTATTATGTATTTTAT
Found at i:102961508 original size:49 final size:49
Alignment explanation
Indices: 102961424--102961528 Score: 140
Period size: 49 Copynumber: 2.1 Consensus size: 49
102961414 GAGCAAGCTT
* *
102961424 AACATGGTCATACCACACGGTCATATGATCTACACAGGTTGAACCATTC
1 AACATGGCCATACCACACGGTCATATGATCTACACAGGTTGAACCACTC
* * *
102961473 AACATGGCCATACCACACGGTCGTGTGA-CTCACACATGTTGAACCACTC
1 AACATGGCCATACCACACGGTCATATGATCT-ACACAGGTTGAACCACTC
*
102961522 CACATGG
1 AACATGG
102961529 ATGTGTGGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
48 2 0.04
49 47 0.96
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (49 bp):
AACATGGCCATACCACACGGTCATATGATCTACACAGGTTGAACCACTC
Found at i:102966759 original size:42 final size:42
Alignment explanation
Indices: 102966706--102966963 Score: 300
Period size: 42 Copynumber: 6.1 Consensus size: 42
102966696 TCATATACAG
* * *
102966706 TGCAATGAAAAGTAAATGGACCTCTACACTTGGGCCTTTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * *
102966748 TGCAACGAAAAGTAAATGGAACTCCACACCTGGGCCTTTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * * * * ** *
102966790 TGCAATGAATAGTGAATTGATCTCCACACCTAGGTGTCTATA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * * *
102966832 TGCAATGAAAAGTGAATGGACCTCCACACCTAGGCTTTTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * *
102966874 TTCAATGAAAAGTAAATGGACCTCCATACTTGGGCCTCTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * *
102966916 TGTAATGAAAAGTAAACGAACCTCCACACCTGGGCCTCTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
102966958 TGCAAT
1 TGCAAT
102966964 AAATGTTTTC
Statistics
Matches: 181, Mismatches: 35, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 181 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (42 bp):
TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
Found at i:102969529 original size:9 final size:9
Alignment explanation
Indices: 102969515--102969540 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
102969505 TGCGTAAATC
102969515 TGACATTTA
1 TGACATTTA
102969524 TGACATTTA
1 TGACATTTA
102969533 TGACATTT
1 TGACATTT
102969541 CTGAGCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (9 bp):
TGACATTTA
Found at i:102983215 original size:12 final size:12
Alignment explanation
Indices: 102983198--102983239 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
102983188 ACTGGACCAG
102983198 TGGCATATCGGT
1 TGGCATATCGGT
* *
102983210 TGGCATTACCAG-
1 TGGCA-TATCGGT
102983222 TGGCATATCGGT
1 TGGCATATCGGT
102983234 TGGCAT
1 TGGCAT
102983240 TACCGGCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (12 bp):
TGGCATATCGGT
Found at i:102983225 original size:24 final size:24
Alignment explanation
Indices: 102983193--102983243 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
102983183 AGAGGACTGG
102983193 ACCAGTGGCATATCGGTTGGCATT
1 ACCAGTGGCATATCGGTTGGCATT
102983217 ACCAGTGGCATATCGGTTGGCATT
1 ACCAGTGGCATATCGGTTGGCATT
102983241 ACC
1 ACC
102983244 GGCAGAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (24 bp):
ACCAGTGGCATATCGGTTGGCATT
Found at i:103015358 original size:17 final size:18
Alignment explanation
Indices: 103015328--103015383 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
103015318 AAATTTTATT
* *
103015328 TTTAAAATTTTTAAAACA
1 TTTAATATTATTAAAACA
*
103015346 -TTAATATTATTAAAATA
1 TTTAATATTATTAAAACA
103015363 TTTAATA-T-TTAAAA-A
1 TTTAATATTATTAAAACA
103015378 TTTAAT
1 TTTAAT
103015384 TAAACGCTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 7 0.21
16 6 0.18
17 15 0.44
18 6 0.18
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTAATATTATTAAAACA
Found at i:103015380 original size:15 final size:17
Alignment explanation
Indices: 103015336--103015383 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
103015326 TTTTTAAAAT
103015336 TTTTAAAACA-TTAATA
1 TTTTAAAACATTTAATA
*
103015352 TTATTAAAATATTTAATA
1 TT-TTAAAACATTTAATA
103015370 -TTTAAAA-ATTTAAT
1 TTTTAAAACATTTAAT
103015384 TAAACGCTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 7 0.24
16 8 0.28
17 8 0.28
18 6 0.21
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAAACATTTAATA
Found at i:103015722 original size:21 final size:22
Alignment explanation
Indices: 103015696--103015747 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 22
103015686 ATAATTCAAG
*
103015696 AATTTATTAAAAAATTAATAA-
1 AATTTATTAAAAAACTAATAAC
*
103015717 AATTTA--AAAAAACTCATAAC
1 AATTTATTAAAAAACTAATAAC
103015737 AATTT-TTAAAA
1 AATTTATTAAAA
103015748 TATAATCCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 11 0.42
20 5 0.19
21 10 0.38
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (22 bp):
AATTTATTAAAAAACTAATAAC
Found at i:103021280 original size:28 final size:30
Alignment explanation
Indices: 103021219--103021280 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
103021209 AATATAAAAT
* *
103021219 TTTTATTTATATTACTTAGTTAAAAATATG
1 TTTTATTTATATTAATTAGTTAAAAATAAG
103021249 TTTTATTT-TA-TAATTAG-TAAAAATAAG
1 TTTTATTTATATTAATTAGTTAAAAATAAG
103021276 ATTTT
1 -TTTT
103021281 CGCTAACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 9 0.31
28 10 0.34
29 2 0.07
30 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (30 bp):
TTTTATTTATATTAATTAGTTAAAAATAAG
Found at i:103022483 original size:2 final size:2
Alignment explanation
Indices: 103022476--103022512 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
103022466 CTTAATCTTT
103022476 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
103022513 AGTTCAAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:103024800 original size:50 final size:50
Alignment explanation
Indices: 103024734--103024910 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
103024724 CCATGACAAC
103024734 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
103024784 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
103024834 AACTGACAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
103024884 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
103024911 GTGATCAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 92 0.80
51 23 0.20
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:103024924 original size:31 final size:31
Alignment explanation
Indices: 103024886--103025065 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
103024876 ACAAATAACA
*
103024886 AGTGAAAAGTGGTAGCTTCGGCTACGTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
103024917 AGTGAAAAGCGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
103024948 ATTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
103024979 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
103025010 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
103025041 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
103025066 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 132 0.98
32 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:103025153 original size:47 final size:46
Alignment explanation
Indices: 103025083--103025297 Score: 204
Period size: 47 Copynumber: 4.7 Consensus size: 46
103025073 AAGTGATTTC
* * * *
103025083 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATA
* * *
103025129 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATA
* * * *
103025176 CGTGTAAGACCATAGCTGAGCTATGGCATCAATAAGTGATATGTGATTA
1 CGTATAAGACCATAGCTGGGATATGGCATCAGT--GTGATATGTGA-TA
* * * *
103025225 CGTGTAAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATA
1 CGTATAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATA
* * *
103025267 TGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATAGCTGGGATATGGCATCA
103025298 TTATCTGAAG
Statistics
Matches: 147, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
42 31 0.21
43 1 0.01
44 5 0.03
45 1 0.01
46 28 0.19
47 41 0.28
48 10 0.07
49 30 0.20
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATA
Found at i:103025235 original size:49 final size:48
Alignment explanation
Indices: 103025134--103025297 Score: 193
Period size: 49 Copynumber: 3.6 Consensus size: 48
103025124 TGCTACTGTA
* * * *
103025134 TAAGACCATATCTGGGATATGGCATCAGT--GAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATAAGTGATATGTGATTCGTG
*
103025180 TAAGACCATAGCTGAGCTATGGCATCAATAAGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATAAGTGATATGTGATT-CGTG
*
103025229 TAAGACCATAGCTGGGCTATGGCATCGATATA-TGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATA-AGTGATATGTGATTCGTG
103025271 TAAGACCATAGCTGGGCTATGGCATCA
1 TAAGACCATAGCTGGGCTATGGCATCA
103025298 TTATCTGAAG
Statistics
Matches: 106, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
42 29 0.27
44 1 0.01
45 1 0.01
46 26 0.25
48 13 0.12
49 35 0.33
50 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCAATAAGTGATATGTGATTCGTG
Found at i:103025272 original size:42 final size:43
Alignment explanation
Indices: 103025177--103025340 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
103025167 TATGTGATTC
* * *
103025177 GTGTAAGACCATAGCTGAGCTATGGCATCAATAAGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGAT---T-ATATGAAGA-T
*
103025224 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
103025268 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATCTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
103025310 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
103025341 GAAAACGAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.62
43 1 0.01
44 6 0.06
45 2 0.02
49 29 0.28
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:103026011 original size:23 final size:23
Alignment explanation
Indices: 103025981--103026031 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
103025971 ATGATATTTC
103025981 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
*
103026004 AAATACTTTGGTGGATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
103026027 AAATA
1 AAATA
103026032 TGAAATAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (23 bp):
AAATACTTTGGTGAATAAAGCTT
Found at i:103027005 original size:43 final size:42
Alignment explanation
Indices: 103026916--103026997 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 42
103026906 TTATTTTTAT
*
103026916 TTTCTTTATTTTTCCTTTTTGAAACTGTTTATACATACAAATA
1 TTTCTTTA-TTTTCCTTTTTAAAACTGTTTATACATACAAATA
* *
103026959 TTTCTTTA-TTTCTTTTTTAAAACTGTTTATATATACAAA
1 TTTCTTTATTTTCCTTTTTAAAACTGTTTATACATACAAA
103026998 CGTATTTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 28 0.78
43 8 0.22
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.55
Consensus pattern (42 bp):
TTTCTTTATTTTCCTTTTTAAAACTGTTTATACATACAAATA
Found at i:103027820 original size:4 final size:4
Alignment explanation
Indices: 103027811--103027857 Score: 51
Period size: 4 Copynumber: 11.5 Consensus size: 4
103027801 TTTACTTGTC
* *
103027811 TTAT TTAT TTAT TTGT TTAT TT-T TTAT GTTAT TTGT TTGAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT TTAT TT-AT TTAT TT
103027858 TATTATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 3 0.08
4 26 0.72
5 7 0.19
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:103027826 original size:17 final size:16
Alignment explanation
Indices: 103027800--103027857 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
103027790 ATTTAGAATC
*
103027800 ATTTACTTGTCTTATTT
1 ATTTATTTGT-TTATTT
103027817 ATTTATTTGTTTATTT
1 ATTTATTTGTTTATTT
* *
103027833 -TTTATGTTATTTGTTT
1 ATTTAT-TTGTTTATTT
103027849 GATTTATTT
1 -ATTTATTT
103027858 TATTATTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 5 0.14
16 14 0.40
17 11 0.31
18 5 0.14
ACGTcount: A:0.17, C:0.03, G:0.09, T:0.71
Consensus pattern (16 bp):
ATTTATTTGTTTATTT
Found at i:103027844 original size:20 final size:20
Alignment explanation
Indices: 103027814--103027853 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
103027804 ACTTGTCTTA
103027814 TTTATTTATTTGTTT-ATTT
1 TTTATTTATTTGTTTGATTT
103027833 TTTATGTTATTTGTTTGATTT
1 TTTAT-TTATTTGTTTGATTT
103027854 ATTTTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.75
Consensus pattern (20 bp):
TTTATTTATTTGTTTGATTT
Found at i:103027855 original size:13 final size:12
Alignment explanation
Indices: 103027800--103027857 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 12
103027790 ATTTAGAATC
*
103027800 ATTTACTTGTCTT
1 ATTTATTTGT-TT
*
103027813 ATTTATTTATTT
1 ATTTATTTGTTT
*
103027825 GTTTATTT-TTT
1 ATTTATTTGTTT
103027836 ATGTTATTTGTTT
1 AT-TTATTTGTTT
103027849 GATTTATTT
1 -ATTTATTT
103027858 TATTATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 4 0.11
12 15 0.39
13 17 0.45
14 2 0.05
ACGTcount: A:0.17, C:0.03, G:0.09, T:0.71
Consensus pattern (12 bp):
ATTTATTTGTTT
Found at i:103027866 original size:24 final size:23
Alignment explanation
Indices: 103027815--103027868 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
103027805 CTTGTCTTAT
103027815 TTATTTATTTGTTTATTTTTTATG
1 TTATTTATTTGTTTATTTTTTA-G
*
103027839 TTATTTGTTTGATTTATTTTATTA-
1 TTATTTATTTG-TTTATTTT-TTAG
103027863 TTATTT
1 TTATTT
103027869 TTACTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 16 0.59
25 8 0.30
26 3 0.11
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (23 bp):
TTATTTATTTGTTTATTTTTTAG
Found at i:103027986 original size:16 final size:16
Alignment explanation
Indices: 103027967--103028040 Score: 56
Period size: 16 Copynumber: 5.0 Consensus size: 16
103027957 GTTTATTATG
103027967 TATTCTATTTATTTTT
1 TATTCTATTTATTTTT
* *
103027983 TATTTTATTCATTTTT
1 TATTCTATTTATTTTT
103027999 TA---TA--TATTTTT
1 TATTCTATTTATTTTT
103028010 ATATTCT-TTTATTTTT
1 -TATTCTATTTATTTTT
103028026 T-TTACT-TTTATTTTT
1 TATT-CTATTTATTTTT
103028041 ATTTTGTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
11 6 0.12
12 2 0.04
13 2 0.04
14 2 0.04
15 13 0.27
16 23 0.48
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (16 bp):
TATTCTATTTATTTTT
Found at i:103028024 original size:15 final size:15
Alignment explanation
Indices: 103028003--103028043 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
103027993 ATTTTTTATA
*
103028003 TATTTTTATATTCTTT
1 TATTTTTAT-TACTTT
*
103028019 TATTTTTTTTACTTT
1 TATTTTTATTACTTT
103028034 TATTTTTATT
1 TATTTTTATT
103028044 TTGTAATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTTATTACTTT
Found at i:103028169 original size:114 final size:113
Alignment explanation
Indices: 103028001--103028228 Score: 420
Period size: 114 Copynumber: 2.0 Consensus size: 113
103027991 TCATTTTTTA
* *
103028001 TATATTTTTATATTCTTTTATTTTTTTTACTTTTATTTTTATTTTGTAATTTATTTATCTACTTA
1 TATATTTTTATATTCTTTTATTTTTTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTTA
*
103028066 TTACCTTTTAGAAATATAAAATTATCTATTATTATCATTGTTATATTT
66 TTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
103028114 TATATTTTTATATTCTTTTATTTTGTTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTT
1 TATATTTTTATATTCTTTTATTTT-TTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTT
103028179 ATTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
65 ATTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
103028228 T
1 T
103028229 TATCCTGTCT
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
113 24 0.22
114 87 0.78
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (113 bp):
TATATTTTTATATTCTTTTATTTTTTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTTA
TTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
Found at i:103039358 original size:19 final size:19
Alignment explanation
Indices: 103039334--103039373 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
103039324 GTAAGTTATG
103039334 ATATGATATACATTTATAT
1 ATATGATATACATTTATAT
*
103039353 ATATGATATATATTTATAT
1 ATATGATATACATTTATAT
103039372 AT
1 AT
103039374 TATGTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATGATATACATTTATAT
Found at i:103039370 original size:17 final size:18
Alignment explanation
Indices: 103039329--103039373 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
103039319 TAGGTGTAAG
103039329 TTATGATATGATATACATT
1 TTAT-ATATGATATACATT
*
103039348 TATATATATGATATATA-T
1 T-TATATATGATATACATT
103039366 TTATATAT
1 TTATATAT
103039374 TATGTAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 2 0.08
19 12 0.50
20 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (18 bp):
TTATATATGATATACATT
Found at i:103053742 original size:45 final size:45
Alignment explanation
Indices: 103053686--103053796 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
103053676 CAAGACCATA
* *
103053686 GTTGAAAGATGCTATGACATCACGATATAATTGAGTAAGACTACG
1 GTTGAAAGATGCTATGACATCACGATAAAAATGAGTAAGACTACG
* * * **
103053731 GTTGAACGATGCTATGACATCATGATAAAAATGAGTAAGACCATA
1 GTTGAAAGATGCTATGACATCACGATAAAAATGAGTAAGACTACG
* *
103053776 GTTGAAAGACGCTATGGCATC
1 GTTGAAAGATGCTATGACATC
103053797 CTTGTAGTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (45 bp):
GTTGAAAGATGCTATGACATCACGATAAAAATGAGTAAGACTACG
Found at i:103053917 original size:27 final size:27
Alignment explanation
Indices: 103053887--103053957 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
103053877 CCGATGGGAA
*
103053887 ATTAAACATGGGATAGTCCAATAGGAC
1 ATTAAACATGGGATAGTCCAATAAGAC
* *
103053914 ATTAAACATGGGATAGTCCGATAAGAT
1 ATTAAACATGGGATAGTCCAATAAGAC
**
103053941 ATTAAACACAGGATAGT
1 ATTAAACATGGGATAGT
103053958 TCGACGGGAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (27 bp):
ATTAAACATGGGATAGTCCAATAAGAC
Found at i:103062507 original size:21 final size:21
Alignment explanation
Indices: 103062483--103062528 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
103062473 CACACGGGTG
* *
103062483 TGTGGGGAAACCACATGGGCA
1 TGTGGGGAAACCACAAGGCCA
103062504 TGTGGGGAAACCACAAGGCCA
1 TGTGGGGAAACCACAAGGCCA
103062525 TGTG
1 TGTG
103062529 TGAAGCCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.37, T:0.15
Consensus pattern (21 bp):
TGTGGGGAAACCACAAGGCCA
Found at i:103064802 original size:25 final size:24
Alignment explanation
Indices: 103064773--103064819 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
103064763 ATTAATATTC
103064773 ATATTAAT-ATGAAATAAACATAATT
1 ATATTAATAAT-AAATAAA-ATAATT
103064798 ATATTAATAATAAATAAAATAA
1 ATATTAATAATAAATAAAATAA
103064820 AAATCTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 15 0.71
26 2 0.10
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
ATATTAATAATAAATAAAATAATT
Found at i:103073774 original size:35 final size:35
Alignment explanation
Indices: 103073728--103073798 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
103073718 AATGTCACCT
103073728 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
1 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
103073763 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
1 TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
103073798 T
1 T
103073799 CAATCCTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (35 bp):
TATTTATAAAAGCTCATCAAAAGGTCAAAAATTAA
Found at i:103073919 original size:24 final size:24
Alignment explanation
Indices: 103073887--103073934 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
103073877 CAATTAAGAG
103073887 ACCAAAACCCACCAAGAAAAATTC
1 ACCAAAACCCACCAAGAAAAATTC
*
103073911 ACCAAAACCGACCAAGAAAAATTC
1 ACCAAAACCCACCAAGAAAAATTC
103073935 CAAACTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.31, G:0.06, T:0.08
Consensus pattern (24 bp):
ACCAAAACCCACCAAGAAAAATTC
Found at i:103075479 original size:2 final size:2
Alignment explanation
Indices: 103075472--103075498 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
103075462 ACCATCCACC
103075472 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
103075499 GGTTGTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103081027 original size:15 final size:15
Alignment explanation
Indices: 103081007--103081036 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
103080997 GCATAGAAGT
103081007 CAACCAACCACTGTC
1 CAACCAACCACTGTC
103081022 CAACCAACCACTGTC
1 CAACCAACCACTGTC
103081037 GTTTATTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (15 bp):
CAACCAACCACTGTC
Found at i:103081379 original size:19 final size:17
Alignment explanation
Indices: 103081324--103081384 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
103081314 TATTAGTTTC
*
103081324 AATACATGCATCTAGTA
1 AATACATGTATCTAGTA
*
103081341 ATTA-ATGTGTATCTAGTA
1 AATACA--TGTATCTAGTA
103081359 AATACATGTATCTTAGATA
1 AATACATGTATC-TAG-TA
103081378 AATACAT
1 AATACAT
103081385 TCATGCAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 1 0.03
17 9 0.25
18 16 0.44
19 10 0.28
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (17 bp):
AATACATGTATCTAGTA
Found at i:103089078 original size:43 final size:43
Alignment explanation
Indices: 103088907--103089079 Score: 219
Period size: 43 Copynumber: 4.0 Consensus size: 43
103088897 ACATAGGATT
* *
103088907 TCGATATGTG-TTATCGTGTAAGACCAAGTCTGGGACGTTGGCA
1 TCGATATTTGATTA-CGTGTAAGACCATGTCTGGGACGTTGGCA
*
103088950 TCGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATT-TGA-TTACGTGTAAGACCATGTCTGGGACGTTGGCA
* *
103088994 TCG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTACGTGTAAGACCATGTCTGGGAC-GTTGGCA
* *
103089036 TCGATATTTGATTACATGTAAGACCATGTCTGGGGCGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
103089079 T
1 T
103089080 TATACGAGCT
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
42 33 0.29
43 45 0.40
44 32 0.28
45 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:103090035 original size:2 final size:2
Alignment explanation
Indices: 103090028--103090063 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
103090018 TTGATTTGAG
103090028 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103090064 GGCCAAGTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103090200 original size:26 final size:26
Alignment explanation
Indices: 103090164--103090214 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
103090154 GAGTTGGTTG
103090164 ATGATATTATGGATTAATTGATACAA
1 ATGATATTATGGATTAATTGATACAA
103090190 ATGATATTATGGATTAATTGATACA
1 ATGATATTATGGATTAATTGATACA
103090215 TGTTTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.04, G:0.16, T:0.39
Consensus pattern (26 bp):
ATGATATTATGGATTAATTGATACAA
Found at i:103091973 original size:13 final size:13
Alignment explanation
Indices: 103091955--103091979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103091945 CTCGGCAGGG
103091955 ACACGCCCGTGTA
1 ACACGCCCGTGTA
103091968 ACACGCCCGTGT
1 ACACGCCCGTGT
103091980 GCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:103097998 original size:22 final size:22
Alignment explanation
Indices: 103097972--103098016 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
103097962 AACTAAGAAA
103097972 ACCATCAATCTTTTTATTTAAG
1 ACCATCAATCTTTTTATTTAAG
103097994 ACCATCAATCTTTTTATTTAAG
1 ACCATCAATCTTTTTATTTAAG
103098016 A
1 A
103098017 GTCCTACCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.44
Consensus pattern (22 bp):
ACCATCAATCTTTTTATTTAAG
Found at i:103108635 original size:12 final size:12
Alignment explanation
Indices: 103108620--103108650 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
103108610 TTCTCTTTTA
103108620 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
103108632 TTTTTCTTTCTC
1 TTTTTCTTTCCC
103108644 TTTTTCT
1 TTTTTCT
103108651 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:103108751 original size:16 final size:16
Alignment explanation
Indices: 103108730--103108760 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103108720 TTTATTATTT
103108730 TATTAACATAATATAA
1 TATTAACATAATATAA
*
103108746 TATTAATATAATATA
1 TATTAACATAATATA
103108761 TTAAAATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:103109942 original size:5 final size:5
Alignment explanation
Indices: 103109932--103109965 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
103109922 ATAATTCTAT
103109932 TTTTA TTTTA TTTTA TTTT- TGTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA TTTT
103109966 CTTTATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 25 0.93
6 1 0.04
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:103111363 original size:28 final size:28
Alignment explanation
Indices: 103111323--103111376 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
103111313 GTCAGTACTT
* *
103111323 TTTAATATCAATCAATTTATCATTATCA
1 TTTAATAGCAATCAATTAATCATTATCA
*
103111351 TTTAATAGCAATCAATTAATCTTTAT
1 TTTAATAGCAATCAATTAATCATTAT
103111377 TGTTCAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.02, T:0.46
Consensus pattern (28 bp):
TTTAATAGCAATCAATTAATCATTATCA
Found at i:103111385 original size:28 final size:28
Alignment explanation
Indices: 103111326--103111385 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
103111316 AGTACTTTTT
* * *
103111326 AATATCAATCAATTTATCATTATCATTT
1 AATAGCAATCAATTAATCATTATCATTC
* **
103111354 AATAGCAATCAATTAATCTTTATTGTTC
1 AATAGCAATCAATTAATCATTATCATTC
103111382 AATA
1 AATA
103111386 TCAGTCAGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.13, G:0.03, T:0.43
Consensus pattern (28 bp):
AATAGCAATCAATTAATCATTATCATTC
Found at i:103111628 original size:48 final size:50
Alignment explanation
Indices: 103111572--103111684 Score: 131
Period size: 51 Copynumber: 2.3 Consensus size: 50
103111562 CCGTAACGAT
* *
103111572 AACAGTAACAGTAGCAGT-A-CACAGAGTACCTCATCAGAACAAATCCGG
1 AACAGTAACAGTAACAGTAAGCACAGAGTACCTCATCAGAACAAATCCGA
* * * * **
103111620 AACAGTAACAGTAACAGTAAGGTACGGAGTACCTCTTCGGAATGAATCCGA
1 AACAGTAACAGTAACAGTAA-GCACAGAGTACCTCATCAGAACAAATCCGA
103111671 AACAGTAACAGTAA
1 AACAGTAACAGTAA
103111685 GGCGACACTT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 17 0.31
49 1 0.02
51 36 0.67
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (50 bp):
AACAGTAACAGTAACAGTAAGCACAGAGTACCTCATCAGAACAAATCCGA
Found at i:103111866 original size:15 final size:17
Alignment explanation
Indices: 103111834--103111870 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
103111824 TATTTCAGTT
103111834 ATTCATATATATTTTCA
1 ATTCATATATATTTTCA
103111851 ATTCA-ATATA-TTTCA
1 ATTCATATATATTTTCA
103111866 ATTCA
1 ATTCA
103111871 CTTTACATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 10 0.50
16 5 0.25
17 5 0.25
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTCATATATATTTTCA
Found at i:103112735 original size:13 final size:12
Alignment explanation
Indices: 103112691--103112742 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
103112681 CTTTTCTCCA
103112691 TTTCT-TTCTTT
1 TTTCTCTTCTTT
*
103112702 CTTTCTCCTCTGTT
1 -TTTCTCTTCT-TT
103112716 TTTCTCTTCTTT
1 TTTCTCTTCTTT
103112728 GTTTCTCTT-TTT
1 -TTTCTCTTCTTT
103112740 TTT
1 TTT
103112743 TTTATTTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
11 3 0.09
12 10 0.29
13 20 0.57
14 2 0.06
ACGTcount: A:0.00, C:0.23, G:0.04, T:0.73
Consensus pattern (12 bp):
TTTCTCTTCTTT
Found at i:103112756 original size:9 final size:9
Alignment explanation
Indices: 103112733--103112764 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
103112723 TCTTTGTTTC
103112733 TCTTTT-TT
1 TCTTTTATT
103112741 T-TTTTATT
1 TCTTTTATT
103112749 TCTTTTATT
1 TCTTTTATT
103112758 TCTTTTA
1 TCTTTTA
103112765 CTTTATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 4 0.18
8 4 0.18
9 14 0.64
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (9 bp):
TCTTTTATT
Found at i:103115795 original size:9 final size:9
Alignment explanation
Indices: 103115771--103115809 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
103115761 ACACTTTCTC
103115771 TTTTTCTTT
1 TTTTTCTTT
* *
103115780 CTCTTCTTT
1 TTTTTCTTT
103115789 TTTTTCTTT
1 TTTTTCTTT
103115798 TTTTT-TTT
1 TTTTTCTTT
103115806 TTTT
1 TTTT
103115810 GCTTAAGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:103117177 original size:7 final size:7
Alignment explanation
Indices: 103117158--103117198 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
103117148 ATCCAAACAA
103117158 AATAAAGT
1 AATAAA-T
103117166 AATAAAT
1 AATAAAT
103117173 AAT-AA-
1 AATAAAT
103117178 AATAAAAT
1 AAT-AAAT
103117186 AATAAAT
1 AATAAAT
103117193 AATAAA
1 AATAAA
103117199 AGAAAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
5 3 0.10
6 2 0.07
7 16 0.53
8 9 0.30
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (7 bp):
AATAAAT
Found at i:103117181 original size:20 final size:20
Alignment explanation
Indices: 103117156--103117204 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
103117146 ATATCCAAAC
*
103117156 AAAATAAAGTAATAAATAAT
1 AAAATAAAATAATAAATAAT
103117176 AAAATAAAATAATAAATAAT
1 AAAATAAAATAATAAATAAT
*
103117196 AAAAGAAAA
1 AAAATAAAA
103117205 ATAAAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (20 bp):
AAAATAAAATAATAAATAAT
Found at i:103120205 original size:21 final size:21
Alignment explanation
Indices: 103120162--103120205 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
103120152 AGTGTGATTG
* *
103120162 AATTGAAATTGTGAAAATTAA
1 AATTAAAATTGTGAAAATAAA
103120183 AATTAAAATTGT-AAATATAAA
1 AATTAAAATTGTGAAA-ATAAA
103120204 AA
1 AA
103120206 GAGTTGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (21 bp):
AATTAAAATTGTGAAAATAAA
Found at i:103122999 original size:28 final size:28
Alignment explanation
Indices: 103122930--103123030 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
103122920 GACAAGATTG
* * * *
103122930 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
103122960 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
103122988 GCACTAAGTGTGCGAG-CTGAATATATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
103123017 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
103123031 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:103123024 original size:29 final size:28
Alignment explanation
Indices: 103122959--103123030 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
103122949 AAAATTGTAC
*
103122959 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
103122987 AGCACTAAGTGTGCGAG-CTGAATATATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
103123016 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
103123031 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:103124738 original size:13 final size:14
Alignment explanation
Indices: 103124717--103124750 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
103124707 AGTTGTTAGC
* *
103124717 ACAAAAAAATTTCA
1 ACAAAAAAGTTCCA
103124731 ACAAAAAAGTTCCA
1 ACAAAAAAGTTCCA
103124745 ACAAAA
1 ACAAAA
103124751 GGCTAAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.18, G:0.03, T:0.15
Consensus pattern (14 bp):
ACAAAAAAGTTCCA
Found at i:103125442 original size:5 final size:5
Alignment explanation
Indices: 103125428--103125462 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
103125418 ATTTTGGTTA
*
103125428 TTATT CTATT TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT
103125463 CTCTTTGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:103125452 original size:15 final size:15
Alignment explanation
Indices: 103125428--103125474 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
103125418 ATTTTGGTTA
103125428 TTATTCTATTTTATT
1 TTATTCTATTTTATT
*
103125443 TTATTTTATTTTATT
1 TTATTCTATTTTATT
* *
103125458 TTATTCTCTTTGATT
1 TTATTCTATTTTATT
103125473 TT
1 TT
103125475 CTTTTACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (15 bp):
TTATTCTATTTTATT
Found at i:103126132 original size:21 final size:21
Alignment explanation
Indices: 103126073--103126132 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
103126063 GGGGTTTAAG
*
103126073 GATT-CCACACGGGCGTGTTT
1 GATTGCCACACGGGCGTGTCT
* *
103126093 G-TAAGACACAC-GGCTGTGTCT
1 GAT-TGCCACACGGGC-GTGTCT
103126114 GATTGCCACACGGGCGTGT
1 GATTGCCACACGGGCGTGT
103126133 GACACCTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 9
0.68 0.11 0.20
Matches are distributed among these distances:
19 1 0.03
20 4 0.13
21 21 0.70
22 4 0.13
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (21 bp):
GATTGCCACACGGGCGTGTCT
Found at i:103129826 original size:16 final size:16
Alignment explanation
Indices: 103129807--103129838 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
103129797 TTTTTTATTC
103129807 ACTTAATTGTTTGCAT
1 ACTTAATTGTTTGCAT
103129823 ACTTAATTGTTTGCAT
1 ACTTAATTGTTTGCAT
103129839 TATGCTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (16 bp):
ACTTAATTGTTTGCAT
Found at i:103137679 original size:36 final size:36
Alignment explanation
Indices: 103137636--103137709 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
103137626 GTCCTATAGC
103137636 ATTTAGATATAGTAGCGGAGGACTAAGAAACTATTT
1 ATTTAGATATAGTAGCGGAGGACTAAGAAACTATTT
103137672 ATTTAGATATAGTAGCGGAGGACTAAGAAACTATTT
1 ATTTAGATATAGTAGCGGAGGACTAAGAAACTATTT
103137708 AT
1 AT
103137710 CATTTTCGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (36 bp):
ATTTAGATATAGTAGCGGAGGACTAAGAAACTATTT
Found at i:103138726 original size:20 final size:21
Alignment explanation
Indices: 103138676--103138730 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
103138666 ATATAAATAC
*
103138676 TTAT-AATATTTTGAAATATA
1 TTATAAATATTTTAAAATATA
* *
103138696 TTTTAAA-ATTTTAAAATTTA
1 TTATAAATATTTTAAAATATA
103138716 -TATAAATA-TTTAAAA
1 TTATAAATATTTTAAAA
103138731 CAACTAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 12 0.41
20 15 0.52
21 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTATAAATATTTTAAAATATA
Found at i:103141880 original size:2 final size:2
Alignment explanation
Indices: 103141873--103141903 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
103141863 TCGTAATGAT
103141873 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
103141904 ATGATAGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:103143194 original size:29 final size:30
Alignment explanation
Indices: 103143140--103143200 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
103143130 ATAAAGTCTT
**
103143140 TTTTTTTAATATTTATGGAAATGGGCC-AA
1 TTTTTTTAATATTTACAGAAATGGGCCGAA
*
103143169 TTTTTTTATTATTTACCAGAAA-GGGCCGAA
1 TTTTTTTAATATTTA-CAGAAATGGGCCGAA
103143199 TT
1 TT
103143201 CCCCGAAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (30 bp):
TTTTTTTAATATTTACAGAAATGGGCCGAA
Found at i:103144575 original size:7 final size:7
Alignment explanation
Indices: 103144563--103144587 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
103144553 AGTCGATTCA
103144563 TATTTAG
1 TATTTAG
103144570 TATTTAG
1 TATTTAG
103144577 TATTTAG
1 TATTTAG
103144584 TATT
1 TATT
103144588 CTGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:103145126 original size:30 final size:30
Alignment explanation
Indices: 103145090--103145174 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
103145080 GATGCGGGCT
* *
103145090 CATCAACAGTACCCACACAATCACTAGACC
1 CATCAACAGTGCCCACACAATCACCAGACC
* * * *
103145120 CATCAACAGCGCTCATACAATCACCAGGCC
1 CATCAACAGTGCCCACACAATCACCAGACC
* * *
103145150 CATCAATAGTGCCAACACAGTCACC
1 CATCAACAGTGCCCACACAATCACC
103145175 GGCCCAATAC
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.36, C:0.39, G:0.11, T:0.14
Consensus pattern (30 bp):
CATCAACAGTGCCCACACAATCACCAGACC
Found at i:103145257 original size:18 final size:18
Alignment explanation
Indices: 103145234--103145276 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
103145224 TGTCAGGTGC
* *
103145234 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
103145252 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
103145270 GTTTCCT
1 GTATCCT
103145277 TTTTCCAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:103145778 original size:54 final size:55
Alignment explanation
Indices: 103145696--103145816 Score: 142
Period size: 54 Copynumber: 2.2 Consensus size: 55
103145686 TATTATTTTA
* *
103145696 TTTAATAAAATAAAAGTTGTTTTGAAT-A-A-AATAATTAT-AATTTACTTTTATATT
1 TTTAATAAAATAAAAGTTCTTTTAAATAAGACAAT-ATTATGAA--TACTTTTATATT
* * *
103145750 TTTAATAAAATAGAAGTTCTTTTAAATAAGACAATATTTTGAATATTTTTATATT
1 TTTAATAAAATAAAAGTTCTTTTAAATAAGACAATATTATGAATACTTTTATATT
103145805 TTTAATAAAATA
1 TTTAATAAAATA
103145817 TAAATAATGC
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
54 24 0.41
55 24 0.41
56 5 0.09
57 5 0.09
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (55 bp):
TTTAATAAAATAAAAGTTCTTTTAAATAAGACAATATTATGAATACTTTTATATT
Found at i:103149029 original size:126 final size:126
Alignment explanation
Indices: 103148800--103149175 Score: 599
Period size: 126 Copynumber: 3.0 Consensus size: 126
103148790 CAAACAGGAT
* *
103148800 CTACTGTAGAAAAAGAACGTCCATGTGGGAGCTTTTTTCAGTACTTTTGTTGACAGTGCATCCTG
1 CTACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
* *
103148865 TTTGAAGCGTTTTTGACACTATATTTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAA
66 CTTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAA
103148926 CTACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
1 CTACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
* * * *
103148991 CTTGAAGCATTTTTGACACTATTTTTTCAAAAATATCTTCTTAAAATTATTTTTTCAGAAA
66 CTTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAA
* * * * *
103149052 TTACTGTAGAAAAAAAACATCAACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTT
1 CTACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
* * * *
103149117 CTTGAAGCGTTTTTGGCACTAGTTGTTCAGAAACATCTTTTCAAAATTATTTTTTCAGA
66 CTTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
103149176 TACGTCTTCT
Statistics
Matches: 229, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 229 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
CTACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
CTTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAA
Found at i:103149173 original size:28 final size:28
Alignment explanation
Indices: 103149142--103149206 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
103149132 GCACTAGTTG
*
103149142 TTCAGAAACATCTTTTCAAAATTATTTT
1 TTCAGAAACATCTTCTCAAAATTATTTT
* * * *
103149170 TTCAGATACGTCTTCTCTAATTTATTTT
1 TTCAGAAACATCTTCTCAAAATTATTTT
103149198 TTCAGAAAC
1 TTCAGAAAC
103149207 TACTATAGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (28 bp):
TTCAGAAACATCTTCTCAAAATTATTTT
Found at i:103151901 original size:15 final size:15
Alignment explanation
Indices: 103151868--103151900 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
103151858 TTTTTAAATA
103151868 TTTTATTATTATTAT
1 TTTTATTATTATTAT
103151883 TTTTATTATTA-TAT
1 TTTTATTATTATTAT
103151897 TTTT
1 TTTT
103151901 TTAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTATTATTAT
Found at i:103152041 original size:16 final size:17
Alignment explanation
Indices: 103152020--103152051 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103152010 CCTTTCTCTT
103152020 TTCTTTG-TTTGTTTTC
1 TTCTTTGTTTTGTTTTC
103152036 TTCTTTGTTTTGTTTT
1 TTCTTTGTTTTGTTTT
103152052 TGGTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.00, C:0.09, G:0.12, T:0.78
Consensus pattern (17 bp):
TTCTTTGTTTTGTTTTC
Found at i:103152041 original size:21 final size:20
Alignment explanation
Indices: 103152012--103152050 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
103152002 TGACTGGTCC
103152012 TTTCTCTTT-TCTTTGTTTGT
1 TTTCTCTTTGT-TTTGTTTGT
103152032 TTTCTTCTTTGTTTTGTTT
1 TTTC-TCTTTGTTTTGTTT
103152051 TTGGTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 12 0.71
22 1 0.06
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (20 bp):
TTTCTCTTTGTTTTGTTTGT
Found at i:103153692 original size:14 final size:14
Alignment explanation
Indices: 103153675--103153709 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
103153665 GTTTGCTAGG
*
103153675 TTTTGAATGAAAAA
1 TTTTGAATAAAAAA
*
103153689 TTTTGCATAAAAAA
1 TTTTGAATAAAAAA
103153703 TTTTGAA
1 TTTTGAA
103153710 AATTGTGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (14 bp):
TTTTGAATAAAAAA
Found at i:103157167 original size:868 final size:867
Alignment explanation
Indices: 103155492--103157214 Score: 3437
Period size: 868 Copynumber: 2.0 Consensus size: 867
103155482 TTTCAATATA
103155492 TAACATACATTTTTTTATGGCGAGACTGTAACTTAACTTATATCGTCTTAATACATACACAGCTT
1 TAACATACATTTTTTTATGGCGAGACTGTAACTTAACTTATATCGTCTTAATACATACACAGCTT
103155557 ACGAGCTAGAACCACACATTTTTCGGCAGAGGATGACTCGGCTTGAGAGTGACATGGAAGGTCAG
66 ACGAGCTAGAACCACACATTTTTCGGCAGAGGATGACTCGGCTTGAGAGTGACATGGAAGGTCAG
103155622 ACGAACACATCCTTCCGACAATGGTTGGGTAGCATGGAACCATGGCAATGGGCTCAAAGTTTTGA
131 ACGAACACATCCTTCCGACAATGGTTGGGTAGCATGGAACCATGGCAATGGGCTCAAAGTTTTGA
103155687 CGAGGGCTTTCGTTACGGTCAAATGACGACAAACTTGGTGGAGGGGATTAACGCTGTGTTGTTAA
196 CGAGGGCTTTCGTTACGGTCAAATGACGACAAACTTGGTGGAGGGGATTAACGCTGTGTTGTTAA
103155752 AAACGCGACATCTTCCGATTTCATCTGTCTTCTCAGCTACATTCTATAGGTTGGCTACATTGATG
261 AAACGCGACATCTTCCGATTTCATCTGTCTTCTCAGCTACATTCTATAGGTTGGCTACATTGATG
103155817 CCAAGAATGGGTCAACAACAAGTCAACCAGATGGAGGCAGGACACGTGTTTGTCGAACATGTCAG
326 CCAAGAATGGGTCAACAACAAGTCAACCAGATGGAGGCAGGACACGTGTTTGTCGAACATGTCAG
103155882 GGATGCAATTGTTGCAAACCGTCGGATGGCGAGGTCGATGAATGTAGAAGTATATTCACGATGTA
391 GGATGCAATTGTTGCAAACCGTCGGATGGCGAGGTCGATGAATGTAGAAGTATATTCACGATGTA
103155947 ATGAAACGTTTCGCGTTACAGAGACCATCGGTCGTCGACCCGGTATTCCACCTAGGTCATACGGG
456 ATGAAACGTTTCGCGTTACAGAGACCATCGGTCGTCGACCCGGTATTCCACCTAGGTCATACGGG
103156012 GTTGATCTCCGAAATAGACGGTGCGATTGTAGGAGGTTCCAAACACTTCATTATCCTTGTGCACA
521 GTTGATCTCCGAAATAGACGGTGCGATTGTAGGAGGTTCCAAACACTTCATTATCCTTGTGCACA
103156077 TGTTGTGGCAGCTTGTGCTAAGGTCTCGCTCAATGTAGATCAATTTATCGATGAAGTGTACACAC
586 TGTTGTGGCAGCTTGTGCTAAGGTCTCGCTCAATGTAGATCAATTTATCGATGAAGTGTACACAC
103156142 TTGAACGCACGTTGCGTGTATGGGAGAATGAGTTTCCCGTGCTTCCTGACCTATCTACTTGGGAG
651 TTGAACGCACGTTGCGTGTATGGGAGAATGAGTTTCCCGTGCTTCCTGACCTATCTACTTGGGAG
103156207 ATTCCTCAAACGACCTTTGAGCTTATCCCAGACAAAGGCTTGCGTAGGAACCCGAGAGGTCGTCC
716 ATTCCTCAAACGACCTTTGAGCTTATCCCAGACAAAGGCTTGCGTAGGAACCCGAGAGGTCGTCC
103156272 GCAATCATCAAGAATCCGTAACGAAATGGACATTAAAGAGAAATCCGACGGGAAGCTGTGTGGAG
781 GCAATCATCAAGAATCCGTAACGAAATGGACATT-AAGAGAAATCCGACGGGAAGCTGTGTGGAG
103156337 TATGCAGATTACGAGCTAGACTG
845 TATGCAGATTACGAGCTAGACTG
103156360 TAACATACATTTTTTTATGGCGAGACTGTAACTTAACTTATATCGTCTTAATACATACACAGCTT
1 TAACATACATTTTTTTATGGCGAGACTGTAACTTAACTTATATCGTCTTAATACATACACAGCTT
103156425 ACGAGCTAGAACCACACATTTTTCGGCAGAGGATGACTCGGCTTGAGAGTGACATGGAAGGTCAG
66 ACGAGCTAGAACCACACATTTTTCGGCAGAGGATGACTCGGCTTGAGAGTGACATGGAAGGTCAG
103156490 ACGAACACATCCTTCCGACAATGGTTGGGTAGCATGGAACCATGGCAATGGGCTCAAAGTTTTGA
131 ACGAACACATCCTTCCGACAATGGTTGGGTAGCATGGAACCATGGCAATGGGCTCAAAGTTTTGA
103156555 CGAGGGCTTTCGTTACGGTCAAATGACGACAAACTTGGTGGAGGGGATTAACGCTGTGTTGTTAA
196 CGAGGGCTTTCGTTACGGTCAAATGACGACAAACTTGGTGGAGGGGATTAACGCTGTGTTGTTAA
103156620 AAACGCGACATCTTCCGATTTCATCTGTCTTCTCAGCTACATTCTATAGGTTGGCTACATTGATG
261 AAACGCGACATCTTCCGATTTCATCTGTCTTCTCAGCTACATTCTATAGGTTGGCTACATTGATG
103156685 CCAAGAATGGGTCAACAACAAGTCAACCAGATGGAGGCAGGACACGTGTTTGTCGAACATGTCAG
326 CCAAGAATGGGTCAACAACAAGTCAACCAGATGGAGGCAGGACACGTGTTTGTCGAACATGTCAG
103156750 GGATGCAATTGTTGCAAACCGTCGGATGGCGAGGTCGATGAATGTAGAAGTATATTCACGATGTA
391 GGATGCAATTGTTGCAAACCGTCGGATGGCGAGGTCGATGAATGTAGAAGTATATTCACGATGTA
103156815 ATGAAACGTTTCGCGTTACAGAGACCATCGGTCGTCGACCCGGTATTCCACCTAGGTCATACGGG
456 ATGAAACGTTTCGCGTTACAGAGACCATCGGTCGTCGACCCGGTATTCCACCTAGGTCATACGGG
103156880 GTTGATCTCCGAAATAGACGGTGCGATTGTAGGAGGTTCCAAACACTTCATTATCCTTGTGCACA
521 GTTGATCTCCGAAATAGACGGTGCGATTGTAGGAGGTTCCAAACACTTCATTATCCTTGTGCACA
103156945 TGTTGTGGCAGCTTGTGCTAAGGTCTCGCTCAATGTAGATCAATTTATCGATGAAGTGTACACAC
586 TGTTGTGGCAGCTTGTGCTAAGGTCTCGCTCAATGTAGATCAATTTATCGATGAAGTGTACACAC
103157010 TTGAACGCACGTTGCGTGTATGGGAGAATGAGTTTCCCGTGCTTCCTGACCTATCTACTTGGGAG
651 TTGAACGCACGTTGCGTGTATGGGAGAATGAGTTTCCCGTGCTTCCTGACCTATCTACTTGGGAG
103157075 ATTCCTCAAACGACCTTTGAGCTTATCCCAGACAAAGGCTTGCGTAGGAACCCGAGAGGTCGTCC
716 ATTCCTCAAACGACCTTTGAGCTTATCCCAGACAAAGGCTTGCGTAGGAACCCGAGAGGTCGTCC
103157140 GCAATCATCAAGAATCCGTAACGAAATGGACATTAAGAGAAATCCGACGGGAAGCTGTGTGGAGT
781 GCAATCATCAAGAATCCGTAACGAAATGGACATTAAGAGAAATCCGACGGGAAGCTGTGTGGAGT
103157205 ATGCAGATTA
846 ATGCAGATTA
103157215 GCTGGTCACA
Statistics
Matches: 855, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
867 41 0.05
868 814 0.95
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (867 bp):
TAACATACATTTTTTTATGGCGAGACTGTAACTTAACTTATATCGTCTTAATACATACACAGCTT
ACGAGCTAGAACCACACATTTTTCGGCAGAGGATGACTCGGCTTGAGAGTGACATGGAAGGTCAG
ACGAACACATCCTTCCGACAATGGTTGGGTAGCATGGAACCATGGCAATGGGCTCAAAGTTTTGA
CGAGGGCTTTCGTTACGGTCAAATGACGACAAACTTGGTGGAGGGGATTAACGCTGTGTTGTTAA
AAACGCGACATCTTCCGATTTCATCTGTCTTCTCAGCTACATTCTATAGGTTGGCTACATTGATG
CCAAGAATGGGTCAACAACAAGTCAACCAGATGGAGGCAGGACACGTGTTTGTCGAACATGTCAG
GGATGCAATTGTTGCAAACCGTCGGATGGCGAGGTCGATGAATGTAGAAGTATATTCACGATGTA
ATGAAACGTTTCGCGTTACAGAGACCATCGGTCGTCGACCCGGTATTCCACCTAGGTCATACGGG
GTTGATCTCCGAAATAGACGGTGCGATTGTAGGAGGTTCCAAACACTTCATTATCCTTGTGCACA
TGTTGTGGCAGCTTGTGCTAAGGTCTCGCTCAATGTAGATCAATTTATCGATGAAGTGTACACAC
TTGAACGCACGTTGCGTGTATGGGAGAATGAGTTTCCCGTGCTTCCTGACCTATCTACTTGGGAG
ATTCCTCAAACGACCTTTGAGCTTATCCCAGACAAAGGCTTGCGTAGGAACCCGAGAGGTCGTCC
GCAATCATCAAGAATCCGTAACGAAATGGACATTAAGAGAAATCCGACGGGAAGCTGTGTGGAGT
ATGCAGATTACGAGCTAGACTG
Found at i:103157472 original size:20 final size:21
Alignment explanation
Indices: 103157447--103157496 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
103157437 ATGCAAAAAA
103157447 TAATTTACAT-AAAAATAAAG
1 TAATTTACATAAAAAATAAAG
103157467 TAATTTACATAAAAAATAAAG
1 TAATTTACATAAAAAATAAAG
103157488 TAATTTACA
1 TAATTTACA
103157497 ATACAAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 10 0.34
21 19 0.66
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (21 bp):
TAATTTACATAAAAAATAAAG
Found at i:103157749 original size:33 final size:32
Alignment explanation
Indices: 103157656--103157752 Score: 133
Period size: 32 Copynumber: 3.0 Consensus size: 32
103157646 ATGAACTCGA
103157656 GCCGGGGGAGTAGAGAACGGCGCTGGATACGG
1 GCCGGGGGAGTAGAGAACGGCGCTGGATACGG
* *
103157688 GCCGGGGGAGTAGAGAACGACGCTGGATATGG
1 GCCGGGGGAGTAGAGAACGGCGCTGGATACGG
* *
103157720 GCCAGGGGGAGAAGAGAATGGCGAC-GGATACGG
1 GCC-GGGGGAGTAGAGAACGGCG-CTGGATACGG
103157753 CTCTGGAGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
32 33 0.58
33 23 0.40
34 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.48, T:0.09
Consensus pattern (32 bp):
GCCGGGGGAGTAGAGAACGGCGCTGGATACGG
Found at i:103157882 original size:33 final size:33
Alignment explanation
Indices: 103157759--103157885 Score: 164
Period size: 33 Copynumber: 3.8 Consensus size: 33
103157749 ACGGCTCTGG
* * * *
103157759 AGGAGCAGAGTACGATGGTGGATATGAGCCAGC
1 AGGAGCAGAGTACGGTGGTGGATAGGAGCCGGA
* *
103157792 AGGAGTAGAGTACGGTGGTGGATATGAGCCGGA
1 AGGAGCAGAGTACGGTGGTGGATAGGAGCCGGA
* *
103157825 AGGAGCGGAGTACGGTGGTGGATAGGAACCGGA
1 AGGAGCAGAGTACGGTGGTGGATAGGAGCCGGA
* *
103157858 AGGAGCGGAGTACAGTGGTGGATAGGAG
1 AGGAGCAGAGTACGGTGGTGGATAGGAG
103157886 GTAGAAGTAG
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 84 1.00
ACGTcount: A:0.28, C:0.11, G:0.46, T:0.15
Consensus pattern (33 bp):
AGGAGCAGAGTACGGTGGTGGATAGGAGCCGGA
Found at i:103158041 original size:6 final size:6
Alignment explanation
Indices: 103158019--103158052 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
103158009 CCGGAGTGTA
* *
103158019 GCTCCG GATCTG GCTCCG GCTCCG GCTCCG GCTC
1 GCTCCG GCTCCG GCTCCG GCTCCG GCTCCG GCTC
103158053 TACCTCCGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.44, G:0.32, T:0.21
Consensus pattern (6 bp):
GCTCCG
Found at i:103160134 original size:155 final size:152
Alignment explanation
Indices: 103159975--103160738 Score: 381
Period size: 139 Copynumber: 5.1 Consensus size: 152
103159965 TTTAATCAAT
103159975 CAATAAAAATTATCAAATAAATAATTAAAAAAATTAAATTTACATTATATAAAAATTACATTAAA
1 CAATAAAAA--AT-AAATAAATAATTAAAAAAATTAAATTTACATTATATAAAAATTACATTAAA
103160040 AAATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAAT
63 AAATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAAT
103160105 TTTATAATTCCCCATCATTTATATA
128 TTTATAATTCCCCATCATTTATATA
* * * ** * *
103160130 CAATAAAAAATAAATATA-AATTATCTAAAGATTAAA-AAACATATGAATTAAAAATAATTGAAA
1 CAATAAAAAATAAATAAATAATTA--AAAAAATTAAATTTACAT-T--A-TATAAA-AATT-ACA
* * * * * * ** * *** ** * * *
103160193 TTGAAACAT-TC-CTA-AGTAGTTTCTTTCACGTAACCTATAAAATTATAT-AACAACAAATTTA
58 TTAAAAAATCACACTACACTA-ATACACT-A-ATAAAAAATAATTTTAT-TGCACAACCATTTTA
* *
103160254 ATCAA--AA-TTT-TAA-T--CAATCA---ATA-A
119 A-AAATTAATTTTATAATTCCCCATCATTTATATA
* ** * *
103160278 AAATTATCAAATAAAT----AATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAA
1 CAA-TAAAAAATAAATAAATAATTAAAAAAATTAAATTTACATTATATAAAAATTACATTAAAAA
103160339 ATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTT
65 ATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTT
103160404 TATAATTCCCCATCATTTATATA
130 TATAATTCCCCATCATTTATATA
* * * ** * *
103160427 CAAT-AAAAATAAATATA-AATTATCTAAAGATTAAA-AAACATATGAATTAAAAATAATTGAAA
1 CAATAAAAAATAAATAAATAATTA--AAAAAATTAAATTTACAT-T--A-TATAAA-AATT-ACA
* * * * * * ** * *** ** * * *
103160489 TTGAAACAT-TC-CTA-AGTAGTTTCTTTCACGTAACCTATAAAATTATAT-AACAACAAATTTA
58 TTAAAAAATCACACTACACTA-ATACACT-A-ATAAAAAATAATTTTAT-TGCACAACCATTTTA
* *
103160550 ATCAA--AA-TTT-TAA-T--CAATCA---ATA-A
119 A-AAATTAATTTTATAATTCCCCATCATTTATATA
* ** * *
103160574 AAATTATCAAATAAAT----AATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAA
1 CAA-TAAAAAATAAATAAATAATTAAAAAAATTAAATTTACATTATATAAAAATTACATTAAAAA
103160635 ATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTT
65 ATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTT
*
103160700 TATAATTTCCCATCATTTATATA
130 TATAATTCCCCATCATTTATATA
103160723 CAATAAAAAATAAATA
1 CAATAAAAAATAAATA
103160739 TAAATTATCT
Statistics
Matches: 425, Mismatches: 119, Indels: 136
0.62 0.17 0.20
Matches are distributed among these distances:
138 6 0.01
139 62 0.15
140 16 0.04
141 28 0.07
142 14 0.03
143 2 0.00
144 18 0.04
145 18 0.04
146 8 0.02
147 11 0.03
148 24 0.06
149 27 0.06
150 4 0.01
151 14 0.03
152 24 0.06
153 13 0.03
154 8 0.02
155 30 0.07
156 22 0.05
157 39 0.09
158 34 0.08
159 3 0.01
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (152 bp):
CAATAAAAAATAAATAAATAATTAAAAAAATTAAATTTACATTATATAAAAATTACATTAAAAAA
TCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTT
ATAATTCCCCATCATTTATATA
Found at i:103160453 original size:296 final size:297
Alignment explanation
Indices: 103159629--103160935 Score: 2343
Period size: 297 Copynumber: 4.4 Consensus size: 297
103159619 AATCTGCAAT
103159629 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
* * * * * * * *
103159694 ATTCAATAAATTTATATAACCTAATCATTTTTTTAAAA-TACCTTATCCAAATATCACAATACAC
66 ATTCAATAAA--T-TA-AA-TTTA-CATTATATAAAAATTACATTA---AAAAATCACACTACAC
* *
103159758 TAATACACTACTAAAAAATAATTTTATTGCACAACCATTTTGAAAATTAATTTTATAATTCCCCA
122 TAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCA
103159823 TCATTTATATACAATAAAAAATAAATATAAATTATCTAAAGATT-AAAAACATATGAATTAAAAA
187 TCATTTATATACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAA
* **
103159887 TAATTGAAATTGAAACATACCTGAA-TAGTTTCTTTCACACAACCTA
252 TAATTGAAATTGAAACATTCCT-AAGTAGTTTCTTTCACGTAACCTA
*
103159933 TAAAATTATATAATAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
* *
103159998 ATTAAAAAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
66 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
103160063 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
131 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
103160128 TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
196 TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
103160193 TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
261 TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
103160230 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
103160295 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
66 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
103160360 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
131 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
103160425 TACAAT-AAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
196 TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
103160489 TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
261 TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
103160526 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
103160591 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
66 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
*
103160656 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTTCCCATCATTTATA
131 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
103160721 TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
196 TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
103160786 TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
261 TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
103160823 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
103160888 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCA
66 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCA
103160936 TAAAACACTA
Statistics
Matches: 979, Mismatches: 20, Indels: 15
0.97 0.02 0.01
Matches are distributed among these distances:
296 418 0.43
297 466 0.48
298 10 0.01
299 8 0.01
300 2 0.00
301 2 0.00
302 1 0.00
304 72 0.07
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (297 bp):
TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
TTGAAACATTCCTAAGTAGTTTCTTTCACGTAACCTA
Found at i:103160764 original size:593 final size:593
Alignment explanation
Indices: 103159629--103160946 Score: 2345
Period size: 593 Copynumber: 2.2 Consensus size: 593
103159619 AATCTGCAAT
103159629 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
* * * * * * *
103159694 ATTCAATAAATTTATATAACCTAATCATTTTTTTAAAA-TACCTTATCCAAATATCACAATACAC
66 ATTCAATAAA--T-TA-AA-TTTA-CATTATATAAAAATTACATTA---AAAAATCACAATACAC
* *
103159758 TAATACACTACTAAAAAATAATTTTATTGCACAACCATTTTGAAAATTAATTTTATAATTCCCCA
122 TAATACACTAATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCA
103159823 TCATTTATATACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAACATATGAATTAAAAAT
187 TCATTTATATACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAACATATGAATTAAAAAT
*
103159888 AATTGAAATTGAAACATACCTGAATAGTTTCTTTCACACAACCTATAAAATTATATAATAACAAA
252 AATTGAAATTGAAACATACCTGAATAGTTTCTTTCACACAACCTATAAAATTATATAACAACAAA
103159953 TTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATAATTAAAAAAATTAAATTTAC
317 TTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATAATTAAAAAAATTAAATTTAC
103160018 ATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACTAATAAAAAATAATTTTATTG
382 ATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACTAATAAAAAATAATTTTATTG
103160083 CACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATATACAATAAAAAATAAATATA
447 CACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATATACAATAAAAAATAAATATA
103160148 AATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAATTGAAACATTCCTAAGTAGT
512 AATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAATTGAAACATTCCTAAGTAGT
103160213 TTCTTTCACGTAACCTA
577 TTCTTTCACGTAACCTA
103160230 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
*
103160295 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACACTACACTAATACACT
66 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACAATACACTAATACACT
103160360 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
131 AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
103160425 TACAAT-AAAAATAAATATAAATTATCTAAAGATTAAAAAACATATGAATTAAAAATAATTGAAA
196 TACAATAAAAAATAAATATAAATTATCTAAAGATT-AAAAACATATGAATTAAAAATAATTGAAA
* **
103160489 TTGAAACATTCCT-AAGTAGTTTCTTTCACGTAACCTATAAAATTATATAACAACAAATTTAATC
260 TTGAAACATACCTGAA-TAGTTTCTTTCACACAACCTATAAAATTATATAACAACAAATTTAATC
* *
103160553 AAAATTTTAATCAATCAATAAAAATTATCAAATAAATAATTCAATAAATTAAATTTACATTATAT
324 AAAATTTTAATCAATCAATAAAAATTATCAAATAAATAATTAAAAAAATTAAATTTACATTATAT
103160618 AAAAATTACATTAAAAAATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACC
389 AAAAATTACATTAAAAAATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACC
*
103160683 ATTTTAAAAATTAATTTTATAATTTCCCATCATTTATATACAATAAAAAATAAATATAAATTATC
454 ATTTTAAAAATTAATTTTATAATTCCCCATCATTTATATACAATAAAAAATAAATATAAATTATC
103160748 TAAAGATTAAAAAACATATGAATTAAAAATAATTGAAATTGAAACATTCCTAAGTAGTTTCTTTC
519 TAAAGATTAAAAAACATATGAATTAAAAATAATTGAAATTGAAACATTCCTAAGTAGTTTCTTTC
103160813 ACGTAACCTA
584 ACGTAACCTA
103160823 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
1 TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
* *
103160888 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCATAAAACACTAA
66 ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACAATACACTAA
103160947 ACTATAAACA
Statistics
Matches: 694, Mismatches: 20, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
592 30 0.04
593 566 0.82
595 10 0.01
596 8 0.01
597 2 0.00
598 2 0.00
599 1 0.00
601 75 0.11
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (593 bp):
TAAAATTATATAACAACAAATTTAATCAAAATTTTAATCAATCAATAAAAATTATCAAATAAATA
ATTCAATAAATTAAATTTACATTATATAAAAATTACATTAAAAAATCACAATACACTAATACACT
AATAAAAAATAATTTTATTGCACAACCATTTTAAAAATTAATTTTATAATTCCCCATCATTTATA
TACAATAAAAAATAAATATAAATTATCTAAAGATTAAAAACATATGAATTAAAAATAATTGAAAT
TGAAACATACCTGAATAGTTTCTTTCACACAACCTATAAAATTATATAACAACAAATTTAATCAA
AATTTTAATCAATCAATAAAAATTATCAAATAAATAATTAAAAAAATTAAATTTACATTATATAA
AAATTACATTAAAAAATCACACTACACTAATACACTAATAAAAAATAATTTTATTGCACAACCAT
TTTAAAAATTAATTTTATAATTCCCCATCATTTATATACAATAAAAAATAAATATAAATTATCTA
AAGATTAAAAAACATATGAATTAAAAATAATTGAAATTGAAACATTCCTAAGTAGTTTCTTTCAC
GTAACCTA
Found at i:103161392 original size:17 final size:16
Alignment explanation
Indices: 103161370--103161416 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
103161360 AAAAATTTAT
103161370 CAAATAATTCTAAATTA
1 CAAATAATT-TAAATTA
*
103161387 CAAATAATTTAATTTTA
1 CAAATAATTTAA-ATTA
103161404 -AAATAATTATAAA
1 CAAATAATT-TAAA
103161417 AATTTAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
CAAATAATTTAAATTA
Found at i:103161446 original size:3 final size:3
Alignment explanation
Indices: 103161440--103161479 Score: 62
Period size: 3 Copynumber: 12.7 Consensus size: 3
103161430 TTTTTTTTAT
103161440 TTC TTC TTC TTTC TTC TTC TTC TTTC TTC TTC TTC TTC TT
1 TTC TTC TTC -TTC TTC TTC TTC -TTC TTC TTC TTC TTC TT
103161480 TTTTTTTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 29 0.83
4 6 0.17
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:103161458 original size:13 final size:13
Alignment explanation
Indices: 103161440--103161476 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
103161430 TTTTTTTTAT
103161440 TTCTTCTTCTTTC
1 TTCTTCTTCTTTC
103161453 TTCTTCTTCTTTC
1 TTCTTCTTCTTTC
103161466 TTCTTCTTCTT
1 TTCTTCTTCTT
103161477 CTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
TTCTTCTTCTTTC
Found at i:103161461 original size:16 final size:17
Alignment explanation
Indices: 103161440--103161480 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
103161430 TTTTTTTTAT
103161440 TTCTTC-TTCTTTCTTC
1 TTCTTCTTTCTTTCTTC
103161456 TTCTTCTTTC-TTCTTC
1 TTCTTCTTTCTTTCTTC
103161472 TTCTTCTTT
1 TTCTTCTTT
103161481 TTTTTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 21 0.88
17 3 0.12
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCTTCTTTCTTTCTTC
Found at i:103161729 original size:3 final size:3
Alignment explanation
Indices: 103161723--103161755 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
103161713 TTTAAAAAAA
*
103161723 AAT AAT AAT AAT AAA AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
103161756 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:103161740 original size:15 final size:15
Alignment explanation
Indices: 103161720--103161753 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
103161710 ATTTTTAAAA
103161720 AAAAATAATAATAAT
1 AAAAATAATAATAAT
103161735 AAAAATAATAATAAT
1 AAAAATAATAATAAT
103161750 AAAA
1 AAAA
103161754 TATTTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAATAATAATAAT
Found at i:103162331 original size:33 final size:34
Alignment explanation
Indices: 103162287--103162353 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
103162277 GGTGAAGTTA
103162287 AAAAAATTTTTGGATTTAGAATTTAATTATATAT
1 AAAAAATTTTTGGATTTAGAATTTAATTATATAT
103162321 AAAAAA-TTTTGGATTTAGAATTTAATTATATAT
1 AAAAAATTTTTGGATTTAGAATTTAATTATATAT
103162354 TTTTATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.46
Consensus pattern (34 bp):
AAAAAATTTTTGGATTTAGAATTTAATTATATAT
Found at i:103164654 original size:6 final size:6
Alignment explanation
Indices: 103164643--103164670 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
103164633 CCAAAAATAG
103164643 TATAAA TATAAA TATAAA TATAAA TATA
1 TATAAA TATAAA TATAAA TATAAA TATA
103164671 TTTTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TATAAA
Found at i:103167731 original size:40 final size:40
Alignment explanation
Indices: 103167686--103167766 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
103167676 TTGGTGACTG
*
103167686 TATGCTACTTGCTTTTCTTCTTTATTTCACTGCAAAATTA
1 TATGCTACTTGCTTTTCTTCTTGATTTCACTGCAAAATTA
*
103167726 TATGCTACTTGGTTTTCTTCTTGATTTCACTGCAAAATTA
1 TATGCTACTTGCTTTTCTTCTTGATTTCACTGCAAAATTA
103167766 T
1 T
103167767 GTGGTTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.49
Consensus pattern (40 bp):
TATGCTACTTGCTTTTCTTCTTGATTTCACTGCAAAATTA
Found at i:103187761 original size:30 final size:30
Alignment explanation
Indices: 103187720--103187788 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
103187710 CACGGGCAGA
* * *
103187720 GACACGGCCATGCGTCTCAGCTGTGTGGAG
1 GACATGGCCATGCGTCTCAGCCGTGTGAAG
*
103187750 GACATGGCCATGTGTCTCAGCCGTGTGAAG
1 GACATGGCCATGCGTCTCAGCCGTGTGAAG
103187780 GACATGGCC
1 GACATGGCC
103187789 TAGCACACGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.20
Consensus pattern (30 bp):
GACATGGCCATGCGTCTCAGCCGTGTGAAG
Found at i:103195205 original size:5 final size:5
Alignment explanation
Indices: 103195195--103195222 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
103195185 CACTTCTGTG
103195195 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
103195223 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:103203829 original size:31 final size:31
Alignment explanation
Indices: 103203786--103203849 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
103203776 CCTTTTCATA
103203786 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
103203817 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
103203848 TT
1 TT
103203850 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:103204119 original size:23 final size:24
Alignment explanation
Indices: 103204042--103204162 Score: 158
Period size: 24 Copynumber: 5.0 Consensus size: 24
103204032 GCTTTATCAT
*
103204042 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
103204067 ATAACTGGGGCA-AAGCCCTTTTTTTA
1 ATAACTGGGGCATAAGCCC---TTTTA
103204093 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
103204116 ATAACCGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
103204140 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
103204163 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
23 23 0.26
24 33 0.38
25 8 0.09
26 17 0.20
27 6 0.07
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:103204149 original size:47 final size:47
Alignment explanation
Indices: 103204063--103204161 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 47
103204053 CCTAGCCTCT
*
103204063 TTTAATAACTGGGGCAAAGCCCTTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACCGGGGCAAAGCCC--TTTTTAATAACTGGGGCATAAGCCC
103204112 TTTAATAACCGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACCGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
103204159 TTT
1 TTT
103204162 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
47 27 0.56
49 15 0.31
50 6 0.12
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
TTTAATAACCGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:103204226 original size:11 final size:11
Alignment explanation
Indices: 103204211--103204266 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
103204201 TCATAAATAC
103204211 ATCATGTGCAT
1 ATCATGTGCAT
*
103204222 GTCAT-T-CAT
1 ATCATGTGCAT
103204231 ATCATGTGCAT
1 ATCATGTGCAT
*
103204242 ATCA--TACAT
1 ATCATGTGCAT
*
103204251 GTCATGTGCAT
1 ATCATGTGCAT
103204262 ATCAT
1 ATCAT
103204267 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:103204236 original size:20 final size:20
Alignment explanation
Indices: 103204211--103204277 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
103204201 TCATAAATAC
* *
103204211 ATCATGTGCATGTCATTCAT
1 ATCATGTGCATATCATACAT
103204231 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
103204251 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
103204271 ACCATGT
1 ATCATGT
103204278 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:103208923 original size:14 final size:14
Alignment explanation
Indices: 103208904--103208930 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103208894 TATCAAGACA
103208904 ATAATTAAGAACAC
1 ATAATTAAGAACAC
103208918 ATAATTAAGAACA
1 ATAATTAAGAACA
103208931 AGTTAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:103212936 original size:23 final size:22
Alignment explanation
Indices: 103212906--103212949 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
103212896 AAAAGAGTGG
103212906 AAATTGAG-TTAGAAGTTTAATA
1 AAATTGAGATTA-AAGTTTAATA
*
103212928 AAATATGAGATTAAATTTTAAT
1 AAAT-TGAGATTAAAGTTTAAT
103212950 GAGTCTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 12 0.63
24 3 0.16
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (22 bp):
AAATTGAGATTAAAGTTTAATA
Found at i:103216699 original size:16 final size:18
Alignment explanation
Indices: 103216678--103216713 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
103216668 TCTATATGGA
103216678 TTTACTT-T-TATTTTAT
1 TTTACTTCTATATTTTAT
103216694 TTTACTTCTATATTTTAT
1 TTTACTTCTATATTTTAT
103216712 TT
1 TT
103216714 AAATAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTACTTCTATATTTTAT
Found at i:103221062 original size:33 final size:33
Alignment explanation
Indices: 103221012--103221074 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
103221002 CCATATCTGG
103221012 GATATGGAATCATTATGAGACTTCATGTAATAT
1 GATATGGAATCATTATGAGACTTCATGTAATAT
* * *
103221045 GATATGGCATCGA-TATGAGATTTCGTGTAA
1 GATATGGAATC-ATTATGAGACTTCATGTAA
103221075 GACCATAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (33 bp):
GATATGGAATCATTATGAGACTTCATGTAATAT
Found at i:103224318 original size:31 final size:31
Alignment explanation
Indices: 103224273--103224351 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
103224263 TTTAACGGTT
**
103224273 ACTGGGCTAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
103224304 ACTGGGCCGCAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
103224335 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
103224352 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:103224634 original size:26 final size:26
Alignment explanation
Indices: 103224557--103224692 Score: 208
Period size: 26 Copynumber: 5.3 Consensus size: 26
103224547 CTGGAAGCCT
103224557 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
*
103224581 AGCCCTTTTCGATAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
103224606 AGCCCTTTTTAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
103224632 AGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
103224658 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
103224684 AGCCCTTTT
1 AGCCCTTTT
103224693 GCACTTCCTC
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 5 0.05
24 6 0.06
25 33 0.32
26 59 0.57
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:103225501 original size:27 final size:26
Alignment explanation
Indices: 103225471--103225548 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 26
103225461 GGGTACATTC
103225471 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
103225498 GTCACTTTACCCTACAGGGG-ATTTACG
1 GTCATTTTA-CCTACAGGGGTA-TTACG
*
103225525 GTC-TCTTTACCTAATAGGGGTATT
1 GTCAT-TTTACCT-ACAGGGGTATT
103225549 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:103225767 original size:81 final size:81
Alignment explanation
Indices: 103225678--103225912 Score: 330
Period size: 81 Copynumber: 2.9 Consensus size: 81
103225668 TTTGTAAATC
* *
103225678 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAG-GGTATTT
*
103225742 TGGTAATTTTACAAACT
65 TAGTAATTTTACAAACT
*
103225759 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
* *
103225824 AGCAATTTTACAGACT
66 AGTAATTTTACAAACT
** * * ** *
103225840 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
103225904 AGTAATTTT
66 AGTAATTTT
103225913 GTAAATCGAG
Statistics
Matches: 138, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 63 0.46
81 73 0.53
82 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
AGTAATTTTACAAACT
Found at i:103225913 original size:27 final size:27
Alignment explanation
Indices: 103225680--103225926 Score: 248
Period size: 27 Copynumber: 9.2 Consensus size: 27
103225670 TGTAAATCAG
*
103225680 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
103225707 AGGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
103225733 GTGGTATTTTGGTAATTTTACAAA-CTA
1 G-GGTATTTTGGTAATTTTACAAATCGA
*
103225760 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATCGA
* * * *
103225788 GGGTATTTCGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
103225815 GGGTATTTTAGCAATTTTACAGA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
103225841 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** *
103225868 GGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* **
103225895 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
103225922 GGGTA
1 GGGTA
103225927 AAACAGTAAT
Statistics
Matches: 183, Mismatches: 33, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
26 23 0.13
27 158 0.86
28 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:103225934 original size:27 final size:27
Alignment explanation
Indices: 103225904--103226034 Score: 199
Period size: 27 Copynumber: 4.9 Consensus size: 27
103225894 AGGGTATTTT
*
103225904 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
103225931 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
103225958 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
103225985 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
103226012 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
103226035 CTTTGGTAAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:103226071 original size:81 final size:80
Alignment explanation
Indices: 103225863--103226072 Score: 199
Period size: 81 Copynumber: 2.6 Consensus size: 80
103225853 AATTTTACTG
* * *
103225863 ATCGAGGGTATTTTGGTAATTTTGTAAAC-CGAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 ATCGAGGGTAATTTGGTAA-TTT-TAAACTCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTA
*
103225927 AAACAGTAATTCTGTAA
64 AAACAGTAATTCTATAA
* **** *** * *
103225944 ATCAAGGGTAAAACAGTAATTCTATAAA-TCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTA
1 ATCGAGGGTAATTTGGTAATT-T-TAAACTCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTA
*
103226008 AAACGGTAATTCTATAA
64 AAACAGTAATTCTATAA
* * *
103226025 ATCGAGGGTACTTTGGTAATTTTACAACTTGAAGGTATTTCAGTAATT
1 ATCGAGGGTAATTTGGTAATTTTA-AACTCGAGGGTATTTCAGTAATT
103226073 TGGTAAACTA
Statistics
Matches: 97, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
79 2 0.02
80 5 0.05
81 90 0.93
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (80 bp):
ATCGAGGGTAATTTGGTAATTTTAAACTCGAGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAA
ACAGTAATTCTATAA
Found at i:103231915 original size:42 final size:42
Alignment explanation
Indices: 103231851--103231936 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
103231841 TTAGGAATAA
* *
103231851 ACCATATCTGGGATATCACATCATTATGAGACTTCGTGTAAG
1 ACCATATCTGGGATATCACATCAATATGAGACTTCATGTAAG
* ** *
103231893 ACCATATTTGGGATATGGCATCAATATGAGATTTCATGTAAG
1 ACCATATCTGGGATATCACATCAATATGAGACTTCATGTAAG
103231935 AC
1 AC
103231937 TATTGCTAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (42 bp):
ACCATATCTGGGATATCACATCAATATGAGACTTCATGTAAG
Found at i:103239687 original size:47 final size:47
Alignment explanation
Indices: 103239588--103239717 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
103239578 AGTCAGCAGT
* * * *
103239588 TCATCTGCTCGACCAGTGGTTTATACACAACATATTCTAGTCGGCAG
1 TCATCTGCTCGACCAGTGGTTTATCCACAACGTATTCAAGTCGACAG
* * * *
103239635 CCATCTGCTCAACTAGTGTTTTATCCACAACGTATTCAAGTTC-ACAG
1 TCATCTGCTCGACCAGTGGTTTATCCACAACGTATTCAAG-TCGACAG
* *
103239682 TCATCTGCTCGACCAGTGGTTTATCCATAATGTATT
1 TCATCTGCTCGACCAGTGGTTTATCCACAACGTATT
103239718 AGTAGCTTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
47 66 0.97
48 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (47 bp):
TCATCTGCTCGACCAGTGGTTTATCCACAACGTATTCAAGTCGACAG
Found at i:103239833 original size:90 final size:91
Alignment explanation
Indices: 103239679--103239845 Score: 214
Period size: 90 Copynumber: 1.8 Consensus size: 91
103239669 TTCAAGTTCA
* * * ** * *
103239679 CAGTCATCTGCTCGACCAGTGGTTTATCCATAATGTATTAGTAGCTTTTATTTACACAAGTGGAT
1 CAGTCATCTGCTCAACCAGTGGTATATCCACAACATATTAGCAGCTTTTATCTACACAAGTGGAT
103239744 AGTTCATCCACCGGTATTCTAATCGG
66 AGTTCATCCACCGGTATTCTAATCGG
*
103239770 CAGTCATCTGCTCAACTAGTGG-ATATCCACAACATATTAGCAGCTTTTATCT-C-CATAGATGG
1 CAGTCATCTGCTCAACCAGTGGTATATCCACAACATATTAGCAGCTTTTATCTACACA-AG-TGG
*
103239832 ATGGTTCATCCACC
64 ATAGTTCATCCACC
103239846 AATATATTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
88 2 0.03
89 3 0.05
90 40 0.62
91 20 0.31
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (91 bp):
CAGTCATCTGCTCAACCAGTGGTATATCCACAACATATTAGCAGCTTTTATCTACACAAGTGGAT
AGTTCATCCACCGGTATTCTAATCGG
Done.