Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 333 of 410
Found at i:103257696 original size:46 final size:46
Alignment explanation
Indices: 103257640--103257813 Score: 249
Period size: 46 Copynumber: 3.8 Consensus size: 46
103257630 TCGACATGAC
* * *
103257640 GCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTCTGTCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTT
* * *
103257686 GCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCAGTCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTT-TCTGTCATGTT
* *
103257733 GCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTT
* *
103257779 GCCATGGAATCTTTCAACCATGGTCTTACACATTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTT
103257814 CCTTTTAGAA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 73 0.63
47 42 0.37
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTT
Found at i:103257761 original size:93 final size:93
Alignment explanation
Indices: 103257640--103257815 Score: 280
Period size: 93 Copynumber: 1.9 Consensus size: 93
103257630 TCGACATGAC
* * * * *
103257640 GCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTCTGTCATGTTGCCATGGTATCTTTCAACC
1 GCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGAATCTTTCAACC
**
103257705 ATGGTCTTATTCATTTCCCAGTCATGTT
66 ATGGTCTTACACATTTCCCAGTCATGTT
*
103257733 GCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGAATCTTTCAACC
1 GCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGAATCTTTCAACC
103257798 ATGGTCTTACACATTTCC
66 ATGGTCTTACACATTTCC
103257816 TTTTAGAAAG
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.40
Consensus pattern (93 bp):
GCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGAATCTTTCAACC
ATGGTCTTACACATTTCCCAGTCATGTT
Found at i:103261568 original size:22 final size:23
Alignment explanation
Indices: 103261541--103261622 Score: 89
Period size: 22 Copynumber: 3.6 Consensus size: 23
103261531 CATTCTTAAA
103261541 CAGAGAGCACTAAAGTGCTATA-
1 CAGAGAGCACTAAAGTGCTATAT
103261563 CAGAGAGCAC-AAATGTGCTA-AT
1 CAGAGAGCACTAAA-GTGCTATAT
* **
103261585 CGGAGAGCACTAGCGTGCTAATAAT
1 CAGAGAGCACTAAAGTGCT-AT-AT
103261610 CAGAGAGCACTAA
1 CAGAGAGCACTAA
103261623 CGTGTTAAGG
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.08
22 30 0.61
23 2 0.04
25 13 0.27
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (23 bp):
CAGAGAGCACTAAAGTGCTATAT
Found at i:103263004 original size:47 final size:47
Alignment explanation
Indices: 103262895--103263029 Score: 200
Period size: 47 Copynumber: 2.9 Consensus size: 47
103262885 TTATCTTCGA
* * * * * *
103262895 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTT-TCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCTGT
103262941 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCTGT
*
103262988 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
103263030 ATTTCAGAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 36 0.44
47 45 0.56
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCTGT
Found at i:103268548 original size:34 final size:33
Alignment explanation
Indices: 103268510--103268576 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
103268500 CAATTATCAG
*
103268510 TCAAATGCAGTCTAGGCCTAAACCCATTACAGAT
1 TCAAATACAGTCTAGGCCTAAACCCATT-CAGAT
* * *
103268544 TCAAATACAGTTTAGGCCTTAGCCCATTCAGAT
1 TCAAATACAGTCTAGGCCTAAACCCATTCAGAT
103268577 ACAGTCTCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 5 0.17
34 24 0.83
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (33 bp):
TCAAATACAGTCTAGGCCTAAACCCATTCAGAT
Found at i:103276271 original size:19 final size:20
Alignment explanation
Indices: 103276231--103276276 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
103276221 GTATTACATG
*
103276231 CACACGCGATTCCACTTAAT
1 CACACACGATTCCACTTAAT
*
103276251 CACACACGATTTCAC-TAAT
1 CACACACGATTCCACTTAAT
*
103276270 CAGACAC
1 CACACAC
103276277 AATTATCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.35, C:0.35, G:0.09, T:0.22
Consensus pattern (20 bp):
CACACACGATTCCACTTAAT
Found at i:103278140 original size:131 final size:131
Alignment explanation
Indices: 103277939--103278277 Score: 353
Period size: 131 Copynumber: 2.6 Consensus size: 131
103277929 TGAAAAAGCG
* * ** * *
103277939 CAACCCAGCACGATAGGGC-TCGATTCTCAAATCGCCAAACATCGAACGTCGCCTACGTTCTGAA
1 CAACCCAGCACGATAGGGCAT-GATTCCCAAATTGCCAAACATCGAATATCGCCTTCGTT-TTAA
* * ** *
103278003 A-GATTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAA
64 AGGATTTTTAATAAACACGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAGCAAACAAGAAA
103278067 TCA
129 TCA
* * *
103278070 CAACCCAGCACGATAGGGCATGATTCCCAAATTGTCAAACACCGAATATTGCCTTCGTTTTAAAG
1 CAACCCAGCACGATAGGGCATGATTCCCAAATTGCCAAACATCGAATATCGCCTTCGTTTTAAAG
* * ** * * *
103278135 GATTTTTAGA-AGACACGGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGTAAACAAGAAAT
66 GATTTTTA-ATAAACACGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAGCAAACAAGAAAT
**
103278199 TG
130 CA
* * * *
103278201 CAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAGA-ATCGAATATCGCCTTCGTTTTAA
1 CAACCCAGCACGATAGGGCATGATTCC-CAAATTGCCAA-ACATCGAATATCGCCTTCGTTTTAA
*
103278265 AGAATTTTTAATA
64 AGGATTTTTAATA
103278278 GTTGTGAAAC
Statistics
Matches: 171, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
130 4 0.02
131 124 0.73
132 42 0.25
133 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCCCAAATTGCCAAACATCGAATATCGCCTTCGTTTTAAAG
GATTTTTAATAAACACGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAGCAAACAAGAAATC
A
Found at i:103279529 original size:11 final size:11
Alignment explanation
Indices: 103279513--103279539 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
103279503 TATATGTATT
103279513 AATATAAATTA
1 AATATAAATTA
103279524 AATATAAATTA
1 AATATAAATTA
103279535 AATAT
1 AATAT
103279540 TATACAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AATATAAATTA
Found at i:103281657 original size:21 final size:21
Alignment explanation
Indices: 103281628--103281667 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
103281618 AAGTTCAAAT
*
103281628 TAAATTTAA-TTAGAAAATATA
1 TAAAATTAATTTA-AAAATATA
103281649 TAAAATTAATTTAAAAATA
1 TAAAATTAATTTAAAAATA
103281668 AATTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TAAAATTAATTTAAAAATATA
Found at i:103283576 original size:28 final size:27
Alignment explanation
Indices: 103283541--103283604 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 27
103283531 GTTTCAAGTT
103283541 TTTTATTTTTAA-TTAATAAATATATTA
1 TTTTATTTTTAATTTAATAAATA-ATTA
*
103283568 TTTTCATTTTTAATTTTAATTAATAATTA
1 TTTT-ATTTTTAA-TTTAATAAATAATTA
103283597 TTTTATTT
1 TTTTATTT
103283605 ATAAAATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
27 4 0.12
28 12 0.36
29 8 0.24
30 9 0.27
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTTATTTTTAATTTAATAAATAATTA
Found at i:103283585 original size:34 final size:34
Alignment explanation
Indices: 103283540--103283604 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
103283530 TGTTTCAAGT
*
103283540 TTTTTATTTTTAATTAATAAATATATTATTTTCA
1 TTTTTAATTTTAATTAATAAATATATTATTTTCA
* *
103283574 TTTTTAATTTTAATTAATAATTATTTTATTT
1 TTTTTAATTTTAATTAATAAATATATTATTT
103283605 ATAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (34 bp):
TTTTTAATTTTAATTAATAAATATATTATTTTCA
Found at i:103283614 original size:28 final size:29
Alignment explanation
Indices: 103283551--103283621 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
103283541 TTTTATTTTT
* *
103283551 AATTAATAAATATATTATTTTCATTTTTAA
1 AATTAATTAATA-ATTATTTTCATTTATAA
**
103283581 TTTTAATTAATAATTATTTT-ATTTATAA
1 AATTAATTAATAATTATTTTCATTTATAA
*
103283609 AATTAAATAATAA
1 AATTAATTAATAA
103283622 ATATGCAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 17 0.50
29 8 0.24
30 9 0.26
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (29 bp):
AATTAATTAATAATTATTTTCATTTATAA
Found at i:103286120 original size:2 final size:2
Alignment explanation
Indices: 103286113--103286140 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
103286103 TGCACCTGAA
103286113 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103286141 GTTCAAGCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103286958 original size:44 final size:44
Alignment explanation
Indices: 103286895--103287027 Score: 239
Period size: 44 Copynumber: 3.0 Consensus size: 44
103286885 TTTGATCTTC
*
103286895 CAAATTAACACACAAGTAATATAGAGAAGATGATTCTCTCTTTT
1 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
103286939 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
1 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
* *
103286983 CAAATTAACACACAAGTAATACAGAAAAGATGACTCTCTCTTTT
1 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
103287027 C
1 C
103287028 TAAAGATGGG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 86 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (44 bp):
CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
Found at i:103295660 original size:12 final size:12
Alignment explanation
Indices: 103295643--103295672 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
103295633 ACACACGACG
*
103295643 GTGTCCCAGCCT
1 GTGTCCCAACCT
103295655 GTGTCCCAACCT
1 GTGTCCCAACCT
103295667 GTGTCC
1 GTGTCC
103295673 ACACCCGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.40, G:0.23, T:0.27
Consensus pattern (12 bp):
GTGTCCCAACCT
Found at i:103297062 original size:26 final size:26
Alignment explanation
Indices: 103297004--103297078 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
103296994 GCCAAGCCTT
*
103297004 ATCGGGAAGCTC-CGAAGAGCTATTA
1 ATCGAGAAGCTCACGAAGAGCTATTA
* *
103297029 ATCAAGAAGCTCACAAAGAGC-ATTTA
1 ATCGAGAAGCTCACGAAGAGCTA-TTA
* *
103297055 ATCGAGAAACTCACGAAGAACTAT
1 ATCGAGAAGCTCACGAAGAGCTAT
103297079 ATATCGGGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
25 11 0.28
26 28 0.70
27 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (26 bp):
ATCGAGAAGCTCACGAAGAGCTATTA
Found at i:103298179 original size:18 final size:18
Alignment explanation
Indices: 103298156--103298197 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
103298146 TTTCCATAGA
103298156 TGACTAAGCATTCTCATT
1 TGACTAAGCATTCTCATT
*
103298174 TGACTAAGCATTCTTATT
1 TGACTAAGCATTCTCATT
103298192 TG-CTAA
1 TGACTAA
103298198 CTCCTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (18 bp):
TGACTAAGCATTCTCATT
Found at i:103301290 original size:29 final size:29
Alignment explanation
Indices: 103301248--103301306 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
103301238 GATATTAGTG
103301248 TTGTTCCCAAAACAAGATCTATAGAAAAT
1 TTGTTCCCAAAACAAGATCTATAGAAAAT
*
103301277 TTGTTCCCGAAACAAGATCTATAGAAAAT
1 TTGTTCCCAAAACAAGATCTATAGAAAAT
103301306 T
1 T
103301307 CCACTTCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (29 bp):
TTGTTCCCAAAACAAGATCTATAGAAAAT
Found at i:103316738 original size:25 final size:25
Alignment explanation
Indices: 103316708--103316816 Score: 82
Period size: 25 Copynumber: 4.4 Consensus size: 25
103316698 GCCATCTCTC
103316708 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATGT
* *
103316733 GAGCCATATAACT-GGAAGCTTATCT
1 GAGCCATATAA-TGGGAAGCTCATGT
** ** **
103316758 GAGCTGTATAGCGGGAAGCTCATAA
1 GAGCCATATAATGGGAAGCTCATGT
* *
103316783 GAGCCATAT--TCAGGAAGCTCGTGT
1 GAGCCATATAAT-GGGAAGCTCATGT
103316807 GAGCCA-ATAA
1 GAGCCATATAA
103316817 CGGGTAGTTC
Statistics
Matches: 63, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
23 2 0.03
24 15 0.24
25 45 0.71
26 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATGT
Found at i:103321879 original size:24 final size:24
Alignment explanation
Indices: 103321847--103321895 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
103321837 GCTTAGTAAG
103321847 TTCATATGTAAATAACAAGTAACA
1 TTCATATGTAAATAACAAGTAACA
103321871 TTCATATGTAAATAACAAGTAACA
1 TTCATATGTAAATAACAAGTAACA
103321895 T
1 T
103321896 AACAATACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (24 bp):
TTCATATGTAAATAACAAGTAACA
Found at i:103321907 original size:24 final size:24
Alignment explanation
Indices: 103321856--103321908 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
103321846 GTTCATATGT
* **
103321856 AAATAACAAGTAACATTCATATGT
1 AAATAACAAGTAACATACATATAC
103321880 AAATAACAAGTAACATAACA-ATAC
1 AAATAACAAGTAACAT-ACATATAC
103321904 AAATA
1 AAATA
103321909 TACCAAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.58, C:0.13, G:0.06, T:0.23
Consensus pattern (24 bp):
AAATAACAAGTAACATACATATAC
Found at i:103322266 original size:46 final size:46
Alignment explanation
Indices: 103322199--103322324 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
103322189 AACCCGCCCC
* * * *
103322199 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
*
103322245 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
103322291 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103322325 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:103322343 original size:46 final size:46
Alignment explanation
Indices: 103322201--103322343 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 46
103322191 CCCGCCCCTA
* * ** *
103322201 AGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTC-A-CATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
* * * *
103322246 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
103322293 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
103322339 AGTGA
1 AGTGA
103322344 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
44 9 0.12
46 65 0.83
48 1 0.01
50 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:103325724 original size:26 final size:26
Alignment explanation
Indices: 103325693--103325757 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
103325683 ACCTTTAATG
*
103325693 ATAATAATATATAGATAAAAAAATAT
1 ATAATAATATATAAATAAAAAAATAT
* * * *
103325719 ATAATAGTATAAAAATAACATAATAT
1 ATAATAATATATAAATAAAAAAATAT
*
103325745 AAAATAAT-TATAA
1 ATAATAATATATAA
103325758 TATATAATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
25 4 0.13
26 27 0.87
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (26 bp):
ATAATAATATATAAATAAAAAAATAT
Found at i:103325732 original size:18 final size:17
Alignment explanation
Indices: 103325693--103325764 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 17
103325683 ACCTTTAATG
*
103325693 ATAATAATATATAGATA-
1 ATAAAAATATATA-ATAT
103325710 A-AAAAATATATAATAGT
1 ATAAAAATATATAATA-T
*
103325727 ATAAAAATAACATAATAT
1 ATAAAAAT-ATATAATAT
103325745 A-AAATAAT-TATAATAT
1 ATAAA-AATATATAATAT
103325761 ATAA
1 ATAA
103325765 TATGAAAGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
15 3 0.07
16 18 0.39
17 7 0.15
18 11 0.24
19 7 0.15
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAAAAATATATAATAT
Found at i:103325834 original size:28 final size:29
Alignment explanation
Indices: 103325788--103325843 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
103325778 ATGTAAAAAT
* *
103325788 AATATATAATATATATAAATAAT-TAATA
1 AATATATAATACATATAAAAAATATAATA
103325816 AATATATAATACA-AGTAAAAAATATAAT
1 AATATATAATACATA-TAAAAAATATAAT
103325844 GTAAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 1 0.04
28 19 0.79
29 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (29 bp):
AATATATAATACATATAAAAAATATAATA
Found at i:103325883 original size:17 final size:18
Alignment explanation
Indices: 103325870--103325937 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
103325860 TTGTGAAAAG
103325870 TAAT-ATATAATGAATAA
1 TAATAATATAATGAATAA
103325887 TAATAATATAAAT-AATAA
1 TAATAATAT-AATGAATAA
* * *
103325905 AAATAAAATAATTATATAA
1 TAATAATATAATGA-ATAA
103325924 TATATATATATAAT
1 TA-ATA-ATATAAT
103325938 ATAAAAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 7 0.17
18 17 0.41
19 8 0.20
20 3 0.07
21 6 0.15
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (18 bp):
TAATAATATAATGAATAA
Found at i:103325921 original size:44 final size:43
Alignment explanation
Indices: 103325865--103325947 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 43
103325855 ATATTTTGTG
103325865 AAAAGTAATATATAATGA-ATA-ATAATAATATAAATAATAAAAAT
1 AAAAGTAATATATAAT-ATATATAT-ATAATATAAA-AATAAAAAT
103325909 AAAA-TAATTATATAATATATATATATAATATAAAAATAA
1 AAAAGTAA-TATATAATATATATATATAATATAAAAATAA
103325948 GGTTAAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
43 9 0.25
44 25 0.69
45 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (43 bp):
AAAAGTAATATATAATATATATATATAATATAAAAATAAAAAT
Found at i:103328064 original size:205 final size:206
Alignment explanation
Indices: 103327549--103328308 Score: 1071
Period size: 206 Copynumber: 3.7 Consensus size: 206
103327539 AAATTTGCTT
* * *
103327549 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTCCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * * * * *
103327614 GCGAAAACTAAATCAGCTATGTCTTCGATTTACTCCTTATAAGCACAAGGATACCAAACCATCCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
103327679 AGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCA-TCGAATAT
131 GGATCTACTTCAGTATAATCATCTGAAGGTTGGATCTGCTATGTGTCTGCCCT-CAGTCGAATAT
* * *
103327743 GGAGACGCTAAA
195 GGAGATGCCAGA
* * *
103327755 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATTTTAGACTTGCTTCAACGTAAGA-A
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAA-ACA
* *
103327819 CATGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
103327884 TGGATCTACTTCAGTATAATCATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCTGTCGAA-GT
130 TGGATCTACTTCAGTATAATCATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCAGTCGAATAT
103327948 GGAGATGCCAGA
195 GGAGATGCCAGA
* * *
103327960 CTTCGTTTTGTTCTCTGATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * * *
103328025 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGTACAAGGATGTCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
103328090 GGATCTGCTTCAATGA-AATCATCTGAAGG-TGAGATCTGCTATGTGTCTGCCCTCAGTCGAATA
131 GGATCTACTTCAGT-ATAATCATCTGAAGGTTG-GATCTGCTATGTGTCTGCCCTCAGTCGAATA
103328153 TGGAGATGCCAGA
194 TGGAGATGCCAGA
* * ** *
103328166 CTTCGATTTGTTCTTTGACAATACATAGATGGAAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * *
103328231 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGTCAAACCATATT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
103328296 GGATCTACTTCAG
131 GGATCTACTTCAG
103328309 CCAGATCTGC
Statistics
Matches: 493, Mismatches: 55, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
204 3 0.01
205 179 0.36
206 311 0.63
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAATCATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCAGTCGAATATG
GAGATGCCAGA
Found at i:103331261 original size:39 final size:40
Alignment explanation
Indices: 103331217--103331381 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
103331207 CCTTCGGAGT
*
103331217 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
103331256 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
103331296 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
103331335 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
103331375 TTAGCCC
1 TTAGCCC
103331382 CGTTATCAAT
Statistics
Matches: 116, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 40 0.34
40 75 0.65
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:103331360 original size:79 final size:80
Alignment explanation
Indices: 103331217--103331381 Score: 239
Period size: 79 Copynumber: 2.1 Consensus size: 80
103331207 CCTTCGGAGT
* * *
103331217 TTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
103331281 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
* *
103331296 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGC
1 TTAGCCCGGATATAGCT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGC
103331358 ACAAATGCCTTCGGGAC
64 ACAAATGCCTTCGGGAC
103331375 TTAGCCC
1 TTAGCCC
103331382 CGTTATCAAT
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 48 0.62
80 29 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:103331983 original size:2 final size:2
Alignment explanation
Indices: 103331976--103332003 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
103331966 ACTTATAACA
103331976 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103332004 TCAATATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103334449 original size:193 final size:193
Alignment explanation
Indices: 103334120--103334510 Score: 755
Period size: 193 Copynumber: 2.0 Consensus size: 193
103334110 CCCATTTCCA
*
103334120 TTCAGGTACCATGATCGACTGGAGTAAACCCATGGGCACTTGATGTTCCGCCTTCACTTGCTGAC
1 TTCAGGTACCATGATCGACTGGAGTAAACCCATAGGCACTTGATGTTCCGCCTTCACTTGCTGAC
*
103334185 ATATTAAACACTTCGAAACAAAATCGGAAATGTTTCGTTTCATACCATGCCACCAAAACTGACGT
66 ATATTAAACACTTCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCACCAAAACTGACGT
103334250 CTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGCTACAATGAGCTTCG
131 CTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGCTACAATGAGCTTCG
*
103334313 TTCAGGTACCATGATCGACTGGAGTAAACCCGTAGGCACTTGATGTTCCGCCTTCACTTGCTGAC
1 TTCAGGTACCATGATCGACTGGAGTAAACCCATAGGCACTTGATGTTCCGCCTTCACTTGCTGAC
103334378 ATATTAAACACTTCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCACCAAAACTGACGT
66 ATATTAAACACTTCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCACCAAAACTGACGT
103334443 CTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGCTACAATGAGCTTCG
131 CTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGCTACAATGAGCTTCG
103334506 TTCAG
1 TTCAG
103334511 AATCATCGAA
Statistics
Matches: 195, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
193 195 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (193 bp):
TTCAGGTACCATGATCGACTGGAGTAAACCCATAGGCACTTGATGTTCCGCCTTCACTTGCTGAC
ATATTAAACACTTCGAAACAAAATCGGAAATGTCTCGTTTCATACCATGCCACCAAAACTGACGT
CTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGCTACAATGAGCTTCG
Found at i:103339410 original size:39 final size:39
Alignment explanation
Indices: 103339366--103339527 Score: 222
Period size: 39 Copynumber: 4.2 Consensus size: 39
103339356 CCTTCGGAGT
*
103339366 TTAGCCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
103339405 TTAGCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
103339444 TTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
103339482 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAG-CCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
103339522 TTAGCC
1 TTAGCC
103339528 CCATTATCAA
Statistics
Matches: 111, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
38 7 0.06
39 99 0.89
40 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:103351513 original size:18 final size:19
Alignment explanation
Indices: 103351465--103351523 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
103351455 ACAATATATA
* *
103351465 ATATATAATAACAAAAATT
1 ATATATAAGAATAAAAATT
* *
103351484 -TATAAAAGAATAATAATT
1 ATATATAAGAATAAAAATT
*
103351502 ATATATAA-AATAAAAAAT
1 ATATATAAGAATAAAAATT
103351520 ATAT
1 ATAT
103351524 TGATTTAGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 26 0.81
19 6 0.19
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
ATATATAAGAATAAAAATT
Found at i:103351826 original size:16 final size:17
Alignment explanation
Indices: 103351790--103351840 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
103351780 TATATAGATA
* *
103351790 AAAAATATATAATAGTAT
1 AAAAATA-ATCATAATAT
103351808 AAAAATAA-CATAATAT
1 AAAAATAATCATAATAT
*
103351824 -AAAATAATTATAATAT
1 AAAAATAATCATAATAT
103351840 A
1 A
103351841 TTATATGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 7 0.25
16 13 0.46
17 1 0.04
18 7 0.25
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAAATAATCATAATAT
Found at i:103351895 original size:11 final size:12
Alignment explanation
Indices: 103351865--103352021 Score: 53
Period size: 11 Copynumber: 12.9 Consensus size: 12
103351855 ATATGTAAAA
*
103351865 ATAATATATAAT
1 ATAATAAATAAT
103351877 ATATATAAATAAT
1 ATA-ATAAATAAT
103351890 -TAATAAAT-AT
1 ATAATAAATAAT
103351900 ATAATACAAGTAA-
1 ATAATA-AA-TAAT
* *
103351913 AAAATATAATGTAAA
1 ATAATA-AA--TAAT
**
103351928 ATAATAATATTTT
1 ATAATAA-ATAAT
* *
103351941 GTGAA-AAGTAAT
1 AT-AATAAATAAT
103351953 AT-AT-AATGAAT
1 ATAATAAAT-AAT
103351964 AATAATAATATAA-
1 -ATAATAA-ATAAT
*
103351977 ATAATATATAAT
1 ATAATAAATAAT
* *
103351989 AAAAT-AATTAT
1 ATAATAAATAAT
*
103352000 ATAATATATAAT
1 ATAATAAATAAT
103352012 ATAA-AAATAA
1 ATAATAAATAA
103352022 GGTTAAAAAT
Statistics
Matches: 107, Mismatches: 21, Indels: 35
0.66 0.13 0.21
Matches are distributed among these distances:
10 5 0.05
11 31 0.29
12 30 0.28
13 22 0.21
14 11 0.10
15 8 0.07
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:103351913 original size:28 final size:29
Alignment explanation
Indices: 103351867--103351922 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
103351857 ATGTAAAAAT
* *
103351867 AATATATAATATATATAAATAAT-TAATA
1 AATATATAATACATATAAAAAATATAATA
103351895 AATATATAATACA-AGTAAAAAATATAAT
1 AATATATAATACATA-TAAAAAATATAAT
103351923 GTAAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 1 0.04
28 19 0.79
29 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (29 bp):
AATATATAATACATATAAAAAATATAATA
Found at i:103351936 original size:18 final size:19
Alignment explanation
Indices: 103351915--103352015 Score: 79
Period size: 19 Copynumber: 5.4 Consensus size: 19
103351905 ACAAGTAAAA
103351915 AATATAATGTAA-AATAAT
1 AATATAATGTAATAATAAT
**
103351933 AATATTTTGTGAA-AAGTAAT
1 AATATAATGT-AATAA-TAAT
103351953 -ATATAATG-AATAATAAT
1 AATATAATGTAATAATAAT
*
103351970 AATATAA-ATAATATATAAT
1 AATATAATGTAATA-ATAAT
*
103351989 AAAATAAT-TATATAATATAT
1 AATATAATGTA-ATAATA-AT
103352009 AATATAA
1 AATATAA
103352016 AAATAAGGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
17 6 0.09
18 20 0.30
19 26 0.39
20 15 0.22
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AATATAATGTAATAATAAT
Found at i:103351981 original size:12 final size:12
Alignment explanation
Indices: 103351964--103352072 Score: 66
Period size: 12 Copynumber: 8.8 Consensus size: 12
103351954 TATAATGAAT
103351964 AATAATAATATA
1 AATAATAATATA
103351976 AATAAT-ATATA
1 AATAATAATATA
*
103351987 ATAAAATAATTATA
1 A-ATAATAA-TATA
103352001 TAATATATAATATA
1 -AATA-ATAATATA
103352015 AA-AATAAGGT-TA
1 AATAATAA--TATA
* *
103352027 AA-AATAAAACA
1 AATAATAATATA
103352038 AATAATAATA-A
1 AATAATAATATA
*
103352049 AAAAATTATATATA
1 AATAA-TA-ATATA
*
103352063 TATAATAATA
1 AATAATAATA
103352073 GGGTTAGATT
Statistics
Matches: 77, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
11 18 0.23
12 31 0.40
13 9 0.12
14 14 0.18
15 5 0.06
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (12 bp):
AATAATAATATA
Found at i:103351986 original size:29 final size:27
Alignment explanation
Indices: 103351949--103352021 Score: 84
Period size: 23 Copynumber: 2.8 Consensus size: 27
103351939 TTGTGAAAAG
103351949 TAATATATAATGAATAATAATAATATAAA
1 TAATATATAAT-AA-AATAATAATATAAA
103351978 TAATATATAATAAAATAAT--TAT--A
1 TAATATATAATAAAATAATAATATAAA
103352001 TAATATATAATATAAA-AATAA
1 TAATATATAATA-AAATAATAA
103352022 GGTTAAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
23 16 0.39
24 3 0.07
25 3 0.07
27 6 0.15
28 2 0.05
29 11 0.27
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (27 bp):
TAATATATAATAAAATAATAATATAAA
Found at i:103351989 original size:7 final size:7
Alignment explanation
Indices: 103351949--103352014 Score: 64
Period size: 7 Copynumber: 9.0 Consensus size: 7
103351939 TTGTGAAAAG
103351949 TAATATA
1 TAATATA
103351956 TAATGA-A
1 TAAT-ATA
103351963 TAATA-A
1 TAATATA
103351969 TAATATAAA
1 TAATAT--A
103351978 TAATATA
1 TAATATA
*
103351985 TAATAAAA
1 TAAT-ATA
103351993 TAATTATA
1 TAA-TATA
103352001 TAATATA
1 TAATATA
103352008 TAATATA
1 TAATATA
103352015 AAAATAAGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
6 7 0.14
7 25 0.49
8 11 0.22
9 8 0.16
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (7 bp):
TAATATA
Found at i:103352021 original size:18 final size:18
Alignment explanation
Indices: 103351774--103352072 Score: 69
Period size: 18 Copynumber: 16.3 Consensus size: 18
103351764 ACCTTTAATG
103351774 AAATAATATATAGATA-AA
1 AAATAATATATA-ATATAA
*
103351792 AAAT-ATATAATAGTATAA
1 AAATAATAT-ATAATATAA
*
103351810 AAAT-A-ACATAATAT-A
1 AAATAATATATAATATAA
*
103351825 AAATAAT-TATAATATATT
1 AAATAATATATAATATA-A
* *
103351843 ATATGGAAGTATAT-ATGTAA
1 AAAT--AA-TATATAATATAA
103351863 AAATAATATATAATATATA
1 AAATAATATATAATATA-A
*
103351882 TAAATAATTAATAAATATATAA
1 -AAATAA-T-ATATA-ATATAA
* *
103351904 TACAAGTAAAAAATATAATGT-A
1 -A-AA-T--AATATATAATATAA
** *
103351926 AAATAATAATATTTTGTGAA
1 AAATAAT-ATATAATAT-AA
*
103351946 AAGTAATATAT-A-AT--
1 AAATAATATATAATATAA
*
103351960 GAATAATA-ATAATATAA
1 AAATAATATATAATATAA
*
103351977 ATAAT-ATATAATAAAATAA
1 A-AATAATAT-ATAATATAA
*
103351996 TTATATAATATATAATATAA
1 --AAATAATATATAATATAA
*
103352016 AAATAAGGT-TA-AAAATAA
1 AAATAA--TATATAATATAA
*
103352034 AACA-AATA-ATAATAAAA
1 AA-ATAATATATAATATAA
*
103352051 AAATTATATAT-ATATAA
1 AAATAATATATAATATAA
*
103352068 TAATA
1 AAATA
103352073 GGGTTAGATT
Statistics
Matches: 207, Mismatches: 34, Indels: 81
0.64 0.11 0.25
Matches are distributed among these distances:
13 2 0.01
14 7 0.03
15 7 0.03
16 17 0.08
17 36 0.17
18 50 0.24
19 17 0.08
20 31 0.15
21 12 0.06
22 11 0.05
23 10 0.05
24 5 0.02
26 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (18 bp):
AAATAATATATAATATAA
Found at i:103353639 original size:16 final size:15
Alignment explanation
Indices: 103353610--103353649 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
103353600 CATGATTGAT
*
103353610 ATATATACATATATTC
1 ATATA-ACATATATAC
103353626 ATATAACATAATATAC
1 ATATAACAT-ATATAC
103353642 ATATAACA
1 ATATAACA
103353650 AAAGCACTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATAACATATATAC
Found at i:103356195 original size:18 final size:17
Alignment explanation
Indices: 103356167--103356200 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
103356157 CTTCTTCATC
103356167 ATTTCTCTTCTTTTTCG
1 ATTTCTCTTCTTTTTCG
103356184 ATTTCTTCTTCTTTTTC
1 ATTTC-TCTTCTTTTTC
103356201 TAAATTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.06, C:0.24, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTCTCTTCTTTTTCG
Found at i:103372048 original size:18 final size:18
Alignment explanation
Indices: 103372017--103372067 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
103372007 TTTCAGAAAA
103372017 ATGGGCCC-CATGCCCAT
1 ATGGGCCCACATGCCCAT
* *
103372034 GTGGGCCCACATGCCCGT
1 ATGGGCCCACATGCCCAT
103372052 AT-GGCCCACATGCCCA
1 ATGGGCCCACATGCCCA
103372068 GATTGACCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 20 0.69
18 9 0.31
ACGTcount: A:0.18, C:0.41, G:0.25, T:0.16
Consensus pattern (18 bp):
ATGGGCCCACATGCCCAT
Found at i:103375796 original size:15 final size:15
Alignment explanation
Indices: 103375776--103375805 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103375766 TCTGCTTTTA
*
103375776 ATAAAATTTTATGTT
1 ATAAAATTGTATGTT
103375791 ATAAAATTGTATGTT
1 ATAAAATTGTATGTT
103375806 GTTTAATACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
ATAAAATTGTATGTT
Found at i:103377534 original size:13 final size:13
Alignment explanation
Indices: 103377516--103377543 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
103377506 TAGTCTGAAC
103377516 TTCTGTATCTGTT
1 TTCTGTATCTGTT
103377529 TTCTGTATCTGTT
1 TTCTGTATCTGTT
103377542 TT
1 TT
103377544 GCGGTGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.14, T:0.64
Consensus pattern (13 bp):
TTCTGTATCTGTT
Found at i:103378631 original size:17 final size:17
Alignment explanation
Indices: 103378609--103378643 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
103378599 GTCATGCACA
103378609 TAGGAATAGGATACTAC
1 TAGGAATAGGATACTAC
103378626 TAGGAATAGGATACTAC
1 TAGGAATAGGATACTAC
103378643 T
1 T
103378644 GGAGGCTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (17 bp):
TAGGAATAGGATACTAC
Found at i:103378829 original size:3 final size:3
Alignment explanation
Indices: 103378821--103378845 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
103378811 GGTTGTAAGA
103378821 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
103378846 GGTTATTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:103378883 original size:18 final size:18
Alignment explanation
Indices: 103378860--103378897 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
103378850 ATTTGACATA
103378860 GTTTGTTTAATAGCAGTT
1 GTTTGTTTAATAGCAGTT
*
103378878 GTTTGTTTAATAGTAGTT
1 GTTTGTTTAATAGCAGTT
103378896 GT
1 GT
103378898 GTTAGCATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.03, G:0.24, T:0.53
Consensus pattern (18 bp):
GTTTGTTTAATAGCAGTT
Found at i:103381119 original size:83 final size:84
Alignment explanation
Indices: 103380953--103381120 Score: 329
Period size: 83 Copynumber: 2.0 Consensus size: 84
103380943 CTCTTTTTTG
103380953 GCATATGACAATTAAGGGGGATAGGGGATTTTTATTTTTTATTTTTTTAATTTTCAATAAAAGTT
1 GCATATGACAATTAAGGGGGATAGGGGATTTTTATTTTTTATTTTTTTAATTTTCAATAAAAGTT
103381018 TTCTTTTCTTATTTTTATT
66 TTCTTTTCTTATTTTTATT
103381037 GCATATGACAATTAA-GGGGATAGGGGATTTTTATTTTTTATTTTTTTAATTTTCAATAAAAGTT
1 GCATATGACAATTAAGGGGGATAGGGGATTTTTATTTTTTATTTTTTTAATTTTCAATAAAAGTT
103381101 TTCTTTTCTTATTTTTATT
66 TTCTTTTCTTATTTTTATT
103381120 G
1 G
103381121 TTATTTTTTA
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 69 0.82
84 15 0.18
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (84 bp):
GCATATGACAATTAAGGGGGATAGGGGATTTTTATTTTTTATTTTTTTAATTTTCAATAAAAGTT
TTCTTTTCTTATTTTTATT
Found at i:103392013 original size:49 final size:50
Alignment explanation
Indices: 103391946--103392192 Score: 300
Period size: 49 Copynumber: 5.0 Consensus size: 50
103391936 AGCTATTGTG
* * *
103391946 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTTTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
103391996 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
103392046 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* *
103392096 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
103392146 -GGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
103392193 CTTCGGCTAC
Statistics
Matches: 167, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 80 0.48
50 49 0.29
51 38 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:103392083 original size:28 final size:28
Alignment explanation
Indices: 103392051--103392134 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
103392041 AACTTCGATC
103392051 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
103392079 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
103392101 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
103392129 ACGTGT
1 ACGTGT
103392135 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:103396374 original size:17 final size:17
Alignment explanation
Indices: 103396352--103396390 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
103396342 CCATTTTAAG
103396352 TATTTA-ATTTATGGTTT
1 TATTTACATTT-TGGTTT
103396369 TATTTACGATTTTGGTTT
1 TATTTAC-ATTTTGGTTT
103396387 TATT
1 TATT
103396391 CTGAAAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 10 0.50
19 4 0.20
ACGTcount: A:0.21, C:0.03, G:0.13, T:0.64
Consensus pattern (17 bp):
TATTTACATTTTGGTTT
Found at i:103404955 original size:16 final size:15
Alignment explanation
Indices: 103404936--103404969 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
103404926 AATTTATTTT
*
103404936 ATAATTATTATTAAAA
1 ATAATTAATA-TAAAA
103404952 ATAATTAATATAAAA
1 ATAATTAATATAAAA
103404967 ATA
1 ATA
103404970 GAAGACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAATTAATATAAAA
Found at i:103409058 original size:23 final size:24
Alignment explanation
Indices: 103409016--103409061 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
103409006 CGTTTTTAAA
103409016 TTTAATGTTAGAAAAATATTTTTT
1 TTTAATGTTAGAAAAATATTTTTT
* *
103409040 TTTAATGTT-TAAAATTATTTTT
1 TTTAATGTTAGAAAAATATTTTT
103409062 AACATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (24 bp):
TTTAATGTTAGAAAAATATTTTTT
Found at i:103409692 original size:90 final size:89
Alignment explanation
Indices: 103409592--103409779 Score: 252
Period size: 90 Copynumber: 2.1 Consensus size: 89
103409582 TATGATATTT
* **
103409592 AAATAATTTAATATAATGATACATCAAACATAAATCTT-AAATGTATTTTAAATAATTAATATAA
1 AAATATTTTAATATAATGATACATCAAACATAAATCTTAAAATACATTTTAAATAATTAATATAA
*
103409656 ATTACCTGTAAAATTTATTATATATA
66 ATTACCTGTAAAA-TTAAT-TATATA
* * * * *
103409682 AAATATTTTAATATAATGATATATGAAATATAAATTTTAAAATACATTTTAAGTAATTAATATAA
1 AAATATTTTAATATAATGATACATCAAACATAAATCTTAAAATACATTTTAAATAATTAATATAA
**
103409747 ATTATTTGTAAAATTAATTATATA
66 ATTACCTGTAAAATTAATTATATA
103409771 AAATATTTT
1 AAATATTTT
103409780 TTAAAATTAA
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
89 15 0.17
90 37 0.43
91 34 0.40
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (89 bp):
AAATATTTTAATATAATGATACATCAAACATAAATCTTAAAATACATTTTAAATAATTAATATAA
ATTACCTGTAAAATTAATTATATA
Found at i:103409764 original size:26 final size:26
Alignment explanation
Indices: 103409735--103409794 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
103409725 ACATTTTAAG
*
103409735 TAATTAATATAAATTA-TTTGTAAAAT
1 TAATT-ATATAAAATATTTTGTAAAAT
*
103409761 TAATTATATAAAATATTTTTTAAAAT
1 TAATTATATAAAATATTTTGTAAAAT
*
103409787 TAAATATA
1 TAATTATA
103409795 ATAATAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
TAATTATATAAAATATTTTGTAAAAT
Found at i:103409783 original size:91 final size:90
Alignment explanation
Indices: 103409592--103409779 Score: 254
Period size: 91 Copynumber: 2.1 Consensus size: 90
103409582 TATGATATTT
* **
103409592 AAATAATTTAATATAATGATACATCAAACATAAATCTTAAATGTATTTTAAATAATTAATATAAA
1 AAATATTTTAATATAATGATACATCAAACATAAATCTTAAATACATTTTAAATAATTAATATAAA
*
103409657 TTACCTGTAAAATTTATTATATATA
66 TTACCTGTAAAATTAATTATATATA
* * * * *
103409682 AAATATTTTAATATAATGATATATGAAATATAAATTTTAAAATACATTTTAAGTAATTAATATAA
1 AAATATTTTAATATAATGATACATCAAACATAAATCTT-AAATACATTTTAAATAATTAATATAA
**
103409747 ATTATTTGTAAAATTAA-T-TATATA
65 ATTACCTGTAAAATTAATTATATATA
103409771 AAATATTTT
1 AAATATTTT
103409780 TTAAAATTAA
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
89 15 0.17
90 34 0.40
91 37 0.43
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (90 bp):
AAATATTTTAATATAATGATACATCAAACATAAATCTTAAATACATTTTAAATAATTAATATAAA
TTACCTGTAAAATTAATTATATATA
Found at i:103411944 original size:14 final size:14
Alignment explanation
Indices: 103411927--103411957 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
103411917 GTATTTGTGA
*
103411927 AAAATAAATATAAT
1 AAAATAAATAAAAT
103411941 AAAATAAATAAAAT
1 AAAATAAATAAAAT
103411955 AAA
1 AAA
103411958 GAACACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:103416392 original size:10 final size:9
Alignment explanation
Indices: 103416376--103416406 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
103416366 AATTTGTGAA
103416376 AAATAAAAT
1 AAATAAAAT
103416385 ATAATAAAAT
1 A-AATAAAAT
103416395 AAATAAAAT
1 AAATAAAAT
103416404 AAA
1 AAA
103416407 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:103419253 original size:46 final size:46
Alignment explanation
Indices: 103419186--103419280 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
103419176 CTAATTTGGC
**
103419186 CAAACACCAAACAAAAGTATCAATTGGACAACTCTCAAAGACATAT
1 CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
103419232 CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
1 CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
103419278 CAA
1 CAA
103419281 CATTTGACCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.52, C:0.25, G:0.07, T:0.16
Consensus pattern (46 bp):
CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
Found at i:103420630 original size:30 final size:30
Alignment explanation
Indices: 103420594--103420652 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
103420584 AACTTTGTTC
* *
103420594 GATTACAGGTATTATGTTGTGTTACTGCTT
1 GATTACAGGTATTATGCTATGTTACTGCTT
*
103420624 GATTACAGGTATTCTGCTATGTTACTGCT
1 GATTACAGGTATTATGCTATGTTACTGCT
103420653 ACTACATTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.44
Consensus pattern (30 bp):
GATTACAGGTATTATGCTATGTTACTGCTT
Found at i:103422983 original size:22 final size:23
Alignment explanation
Indices: 103422958--103423002 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
103422948 AGGTATCTAC
*
103422958 AAATTAAATC-TCTAAGATTGCA
1 AAATCAAATCTTCTAAGATTGCA
*
103422980 AAATCATATCTTCTAAGATTGCA
1 AAATCAAATCTTCTAAGATTGCA
103423003 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTGCA
Found at i:103423045 original size:35 final size:35
Alignment explanation
Indices: 103422968--103423074 Score: 119
Period size: 35 Copynumber: 2.9 Consensus size: 35
103422958 AAATTAAATC
103422968 TCTAAGATTGCAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTGC--AATCATA---TCTAAGATT--ATATCATA
103423010 TCTAAGATTGCAATCATATCTAAGATTATATCATA
1 TCTAAGATTGCAATCATATCTAAGATTATATCATA
*
103423045 TCTAAGATTGCATATCAT-T-GAAGATTATAT
1 TCTAAGATTGCA-ATCATATCTAAGATTATAT
103423075 TTCCATATGA
Statistics
Matches: 63, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
34 10 0.16
35 21 0.33
36 5 0.08
37 9 0.14
40 7 0.11
42 11 0.17
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGCAATCATATCTAAGATTATATCATA
Found at i:103423070 original size:17 final size:19
Alignment explanation
Indices: 103422968--103423062 Score: 124
Period size: 19 Copynumber: 4.9 Consensus size: 19
103422958 AAATTAAATC
*
103422968 TCTAAGATTGCAAAATCATA
1 TCTAAGATTGC-ATATCATA
103422988 TCTTCTAAGATTGCATATCATA
1 ---TCTAAGATTGCATATCATA
103423010 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
103423028 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
103423045 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
103423063 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 10
0.86 0.01 0.13
Matches are distributed among these distances:
16 1 0.01
17 15 0.22
18 15 0.22
19 19 0.28
22 7 0.10
23 11 0.16
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:103423471 original size:45 final size:45
Alignment explanation
Indices: 103423415--103423688 Score: 261
Period size: 45 Copynumber: 6.1 Consensus size: 45
103423405 GGAAGGCGAT
* * * * *
103423415 ATCTTCTATCTTTGATCTGCTCCTCGTCTAATACAGAGACGTCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
103423460 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGTCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
103423505 ATCTG-TTTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
103423549 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
103423594 ATCTG-TCATGTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGCT-ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
*
103423639 ATCTGCTATGTCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAA
1 ATCTGCTA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
103423686 ATC
1 ATC
103423689 ATCTTGGATC
Statistics
Matches: 189, Mismatches: 29, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
43 6 0.03
44 45 0.24
45 108 0.57
46 1 0.01
47 18 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:103423550 original size:89 final size:89
Alignment explanation
Indices: 103423429--103423599 Score: 261
Period size: 89 Copynumber: 1.9 Consensus size: 89
103423419 TCTATCTTTG
* * **
103423429 ATCTGCTCCTCGTCTAATACAGAGACGTCAAATCTGCTATCTTTGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTATCTCCGATCTGCTCCCCGTCTAATAC
*
103423494 AGAGACGTCAAATCTGTTTCTTCA
66 AGAGACGCCAAATCTGTTTCTTCA
* * *
103423518 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTATCTCCGATCTGCTCCCCGTCTAATAC
*
103423583 AGAGATGCCAAATCTGT
66 AGAGACGCCAAATCTGT
103423600 CATGTTGGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCTATCTCCGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGTTTCTTCA
Found at i:103423596 original size:134 final size:137
Alignment explanation
Indices: 103423432--103423688 Score: 321
Period size: 134 Copynumber: 1.9 Consensus size: 137
103423422 ATCTTTGATC
* * * *
103423432 TGCTCCTCGTCTAATACAGAGACGTCAAATCTG-CTATCTTTGATCTGCTCCCCG-TCT-AATAC
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTGGATCTGCT--CCGATCTAAACAC
*
103423494 A-GAGACGTCAAATCTG-T-T-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
63 ATGA-ACGTCAAATCTGCTATGTCTTCAATCTGCTACCCGTCTAATACAGAGATGCCAAATCTGT
103423555 TATCTCCGATT
127 TATCTCCGATT
* * * *
103423566 TGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATGTTGGATCTGCTTCGATGTAAACACATG
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTGGATCTGCTCCGATCTAAACACATG
* * *
103423631 AAGGTCAGATCTGCTATGTCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATC
66 AACGTCAAATCTGCTATGTCTTCAATCTGCTACCCGTCTAATACAGAGATGCCAAATC
103423689 ATCTTGGATC
Statistics
Matches: 104, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
132 2 0.02
133 2 0.02
134 57 0.55
135 4 0.04
136 1 0.01
137 38 0.37
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (137 bp):
TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTGGATCTGCTCCGATCTAAACACATG
AACGTCAAATCTGCTATGTCTTCAATCTGCTACCCGTCTAATACAGAGATGCCAAATCTGTTATC
TCCGATT
Found at i:103423757 original size:78 final size:77
Alignment explanation
Indices: 103423628--103423896 Score: 416
Period size: 78 Copynumber: 3.5 Consensus size: 77
103423618 ATGTAAACAC
103423628 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCT
103423693 TGGATCTGCTTCA
65 TGGATCTGCTTCA
* * *
103423706 ATGAAGGTTCA-ATCTGTTATGTCTTCGATCTGCTCCATGTCTAATACAGAGATGTCAAATCATC
1 ATGAAGG-TCAGATCTGCTATGTCTTCGATCTGCTCC-CGTCTAATACAGAGATGCCAAATCATC
*
103423770 TTGGATTTGCTTCA
64 TTGGATCTGCTTCA
* *
103423784 ATGAAGGTCCA-ATCTGCTGTGTCTTCGTTCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATC
103423848 TTGGATCTGCTTCA
64 TTGGATCTGCTTCA
*
103423862 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
103423897 TCCATCGAAT
Statistics
Matches: 173, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
77 6 0.03
78 162 0.94
79 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (77 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCCAAATCATCTT
GGATCTGCTTCA
Found at i:103432362 original size:20 final size:19
Alignment explanation
Indices: 103432337--103432375 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
103432327 AATCTAACCC
*
103432337 TATATATTTATTTTTATTAT
1 TATATATATATTTTT-TTAT
103432357 TATATATATATTTTTTTAT
1 TATATATATATTTTTTTAT
103432376 ATTGTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TATATATATATTTTTTTAT
Found at i:103432369 original size:24 final size:24
Alignment explanation
Indices: 103432337--103432383 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
103432327 AATCTAACCC
103432337 TATATATTTATTTT-TATTATTATA
1 TATATATTT-TTTTATATTATTATA
*
103432361 TATATATTTTTTTATATTGTTAT
1 TATATATTTTTTTATATTATTAT
103432384 TTGTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
TATATATTTTTTTATATTATTATA
Found at i:103432419 original size:7 final size:7
Alignment explanation
Indices: 103432409--103432544 Score: 54
Period size: 7 Copynumber: 20.0 Consensus size: 7
103432399 ACCTTATTTC
103432409 ATATTAT
1 ATATTAT
103432416 ATATTAT
1 ATATTAT
*
103432423 ATAAGTATT
1 AT-ATTA-T
*
103432432 TTATTAT
1 ATATTAT
103432439 ATATTAT
1 ATATTAT
*
103432446 TTA-TAT
1 ATATTAT
103432452 -TATTAT
1 ATATTAT
*
103432458 TTATTAT
1 ATATTAT
* *
103432465 -TTTTCAC
1 ATATT-AT
* *
103432472 AAATTGT
1 ATATTAT
103432479 -TATTAT
1 ATATTAT
*
103432485 TTA-TAT
1 ATATTAT
*
103432491 ACATTAT
1 ATATTAT
103432498 ATATTAT
1 ATATTAT
* *
103432505 -TTTTTT
1 ATATTAT
*
103432511 ACA-TAT
1 ATATTAT
*
103432517 ATACTTTT
1 ATA-TTAT
103432525 ATATTAT
1 ATATTAT
103432532 ATATTAT
1 ATATTAT
103432539 A-ATTAT
1 ATATTAT
103432545 GGTATTAAAT
Statistics
Matches: 94, Mismatches: 24, Indels: 23
0.67 0.17 0.16
Matches are distributed among these distances:
5 2 0.02
6 30 0.32
7 47 0.50
8 13 0.14
9 2 0.02
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (7 bp):
ATATTAT
Found at i:103432439 original size:14 final size:16
Alignment explanation
Indices: 103432410--103432454 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
103432400 CCTTATTTCA
103432410 TATTATATATTATATAAG
1 TATT-TATATTATAT-AG
*
103432428 TATTT-TATTATATAT
1 TATTTATATTATATAG
103432443 TATTTATATTAT
1 TATTTATATTAT
103432455 TATTTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 6 0.24
16 14 0.56
17 1 0.04
18 4 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTTATATTATATAG
Found at i:103432579 original size:19 final size:19
Alignment explanation
Indices: 103432547--103432586 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
103432537 ATAATTATGG
* *
103432547 TATTAAATCTTTTATATAT
1 TATTAAATCATTTATACAT
*
103432566 TATTATATCATTTATACAT
1 TATTAAATCATTTATACAT
103432585 TA
1 TA
103432587 AATGCTAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAAATCATTTATACAT
Found at i:103435256 original size:22 final size:21
Alignment explanation
Indices: 103435221--103435332 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 21
103435211 AAAAGGTATC
* *
103435221 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
103435242 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
103435265 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
103435284 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
103435302 T--ATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
103435319 TGCATATCATATCT
1 TACAAATCATATCT
103435333 AAGATTGCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
17 15 0.19
18 15 0.19
19 19 0.24
21 4 0.05
22 15 0.19
23 10 0.13
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:103435264 original size:23 final size:22
Alignment explanation
Indices: 103435221--103435278 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
103435211 AAAAGGTATC
* *
103435221 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
103435242 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
103435265 TGCATATCATATCT
1 TACAAATCATATCT
103435279 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:103435281 original size:19 final size:19
Alignment explanation
Indices: 103435257--103435347 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
103435247 AATCATATCT
103435257 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
103435276 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
103435294 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
103435311 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
103435330 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
103435348 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
16 1 0.01
17 15 0.22
18 15 0.22
19 38 0.55
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:103435325 original size:54 final size:53
Alignment explanation
Indices: 103435257--103435359 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 53
103435247 AATCATATCT
*
103435257 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATATCTAAGATTATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCAT-T-GAAGATTATATCATA
103435311 TCTAAGATTGCATATCATATCTAAGATTGCATATCATTGAAGATTATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCATTGAAGATTATAT
103435360 TTCCATATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
53 10 0.21
54 32 0.68
55 5 0.11
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (53 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATCATTGAAGATTATATCATA
Found at i:103438223 original size:23 final size:23
Alignment explanation
Indices: 103438183--103438230 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
103438173 TTCCTGATTG
* *
103438183 ATGGCTCTCTAGAGCTTCCCGAT
1 ATGGCTCACTAGAACTTCCCGAT
*
103438206 ATGGCTCACTTGAACTTCCCGAT
1 ATGGCTCACTAGAACTTCCCGAT
103438229 AT
1 AT
103438231 ATGGCTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (23 bp):
ATGGCTCACTAGAACTTCCCGAT
Found at i:103438320 original size:24 final size:24
Alignment explanation
Indices: 103438168--103438322 Score: 97
Period size: 25 Copynumber: 6.4 Consensus size: 24
103438158 AAGCTCTTTT
103438168 TGAGCTTCCTGATTGATGGCTCTCTA
1 TGAGCTTCCTGATT-ATGGCTCT-TA
* *
103438194 -GAGCTTCCCGA-TATGGCTCACT-
1 TGAGCTTCCTGATTATGGCTC-TTA
* * * *
103438216 TGAACTTCCCGATATATGGCTATCCA
1 TGAGCTTCCTGAT-TATGGCTCT-TA
103438242 -GAGCTTCCTGATTAATGGCTCTTCA
1 TGAGCTTCCTGATT-ATGGCTCTT-A
* * **
103438267 -GAGCTACCCG-TTATTGGCTCGCA
1 TGAGCTTCCTGATTA-TGGCTCTTA
103438290 TGAGCTTCCTGATTATGGCTCTTA
1 TGAGCTTCCTGATTATGGCTCTTA
*
103438314 TGTGCTTCC
1 TGAGCTTCC
103438323 CGTTATACAG
Statistics
Matches: 99, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
23 20 0.20
24 33 0.33
25 46 0.46
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.34
Consensus pattern (24 bp):
TGAGCTTCCTGATTATGGCTCTTA
Found at i:103438322 original size:73 final size:73
Alignment explanation
Indices: 103438169--103438309 Score: 187
Period size: 73 Copynumber: 1.9 Consensus size: 73
103438159 AGCTCTTTTT
* * *
103438169 GAGCTTCCTGATTGATGGCTCTCTAGAGCTTCCCGATATGGCTCACTTGAACTTCCCGATATATG
1 GAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATGGCTCACATGAACTTCCCGATATATG
103438234 GCTATCCA
66 GCTATCCA
* * * *
103438242 GAGCTTCCTGATTAATGGCTCT-TCAGAGCTACCCGTTATTGGCTCGCATGAGCTTCCTGAT-TA
1 GAGCTTCCTGATTAATGGCTCTCT-AGAGCTACCCGATA-TGGCTCACATGAACTTCCCGATATA
103438305 TGGCT
64 TGGCT
103438310 CTTATGTGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
72 1 0.02
73 40 0.68
74 18 0.31
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (73 bp):
GAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATGGCTCACATGAACTTCCCGATATATG
GCTATCCA
Found at i:103438345 original size:49 final size:49
Alignment explanation
Indices: 103438243--103438360 Score: 116
Period size: 49 Copynumber: 2.4 Consensus size: 49
103438233 GGCTATCCAG
** * *
103438243 AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGTTATTGGCTCGCATG
1 AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGTTATCAGCTCGAATA
* * *
103438292 AGCTTCCTGATT-ATGGCTCTT-ATGTGCTTCCCGTTATACAGCTTGAATA
1 AGCTTCCTGATTAATGGCTCTTCA-GAGCTACCCGTTAT-CAGCTCGAATA
*
103438341 AGCTTCCCG-TTATATGGCTC
1 AGCTTCCTGATTA-ATGGCTC
103438361 GAGAGAGAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
47 1 0.02
48 23 0.40
49 26 0.46
50 7 0.12
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (49 bp):
AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGTTATCAGCTCGAATA
Found at i:103444537 original size:26 final size:26
Alignment explanation
Indices: 103444507--103444559 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
103444497 TTAGCAACCC
103444507 ATTTAAAAGTAAAATAGAATAAGACA
1 ATTTAAAAGTAAAATAGAATAAGACA
*
103444533 ATTTAAAAGTAGAATAGAATAAGACA
1 ATTTAAAAGTAAAATAGAATAAGACA
103444559 A
1 A
103444560 GTGTGACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.04, G:0.13, T:0.23
Consensus pattern (26 bp):
ATTTAAAAGTAAAATAGAATAAGACA
Found at i:103447856 original size:5 final size:5
Alignment explanation
Indices: 103447813--103447853 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
103447803 ATAATTTTAG
103447813 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT- TTTT- TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
103447854 TTTGGTTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 12 0.33
5 24 0.67
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (5 bp):
TTTTC
Found at i:103448287 original size:2 final size:2
Alignment explanation
Indices: 103448280--103448308 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
103448270 GAAACCAACA
103448280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
103448309 GAAACAGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:103455909 original size:39 final size:39
Alignment explanation
Indices: 103455854--103456023 Score: 207
Period size: 39 Copynumber: 4.3 Consensus size: 39
103455844 GTGTGAGATT
* *
103455854 GAAAATATATCCGGACATGA-AGTCCGCAGTCTATATGCTG
1 GAAAA-ATATCCGGACATGAGA-TCCGCAGGCTATATGCTA
103455894 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
* *
103455933 GAAATATATTCGGACATGAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
* * * * ** * *
103455972 GAAATATATCTGGACTTGAGGTCCGCAGGCTACGTGTTG
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
103456011 GAAAAATATCCGG
1 GAAAAATATCCGG
103456024 GTTAAAGACC
Statistics
Matches: 115, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 109 0.95
40 6 0.05
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
Found at i:103459801 original size:45 final size:45
Alignment explanation
Indices: 103459744--103459833 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
103459734 AGCCCCAGTG
103459744 TTAGTGCAGCCCGAATCCGGTAAAGAGTTTGTTATTTACAGTGAT
1 TTAGTGCAGCCCGAATCCGGTAAAGAGTTTGTTATTTACAGTGAT
103459789 TTAGTGCAGCCCGAATCCGGTAAAGAGTTTGTTATTTACAGTGAT
1 TTAGTGCAGCCCGAATCCGGTAAAGAGTTTGTTATTTACAGTGAT
103459834 GCATCTTTAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (45 bp):
TTAGTGCAGCCCGAATCCGGTAAAGAGTTTGTTATTTACAGTGAT
Found at i:103460715 original size:22 final size:23
Alignment explanation
Indices: 103460676--103460722 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
103460666 TTAGCTTCCC
103460676 GATGTGGGATCCCTCCATCACTA
1 GATGTGGGATCCCTCCATCACTA
103460699 GATGTGGGAT-CCTCCATCACTA
1 GATGTGGGATCCCTCCATCACTA
103460721 GA
1 GA
103460723 GTTAAAACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (23 bp):
GATGTGGGATCCCTCCATCACTA
Found at i:103468073 original size:40 final size:39
Alignment explanation
Indices: 103468025--103468195 Score: 229
Period size: 39 Copynumber: 4.3 Consensus size: 39
103468015 ACGACTAGCT
*
103468025 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
* *
103468065 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
*
103468105 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
*
103468144 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
103468183 CGAACGCCTTCGG
1 CAAATGCCTTCGG
103468196 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 73 0.60
40 45 0.37
41 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:103468139 original size:39 final size:40
Alignment explanation
Indices: 103468025--103468248 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
103468015 ACGACTAGCT
*
103468025 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
* *
103468065 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
103468105 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
103468144 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
103468183 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
103468224 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
103468249 CATCATTCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 75 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:103476088 original size:40 final size:40
Alignment explanation
Indices: 103476043--103476209 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
103476033 CGGAATATAA
103476043 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
103476083 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
103476123 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
103476163 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
103476202 CCGGATAT
1 CCGGATAT
103476210 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103482283 original size:39 final size:39
Alignment explanation
Indices: 103482229--103482406 Score: 243
Period size: 39 Copynumber: 4.5 Consensus size: 39
103482219 TAATGGAGAA
*
103482229 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
103482268 TTATATCCGGGCTAAGT-CCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
103482306 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
103482345 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
103482384 TTATATCCAGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
103482407 CATGCTTTGT
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 36 0.29
39 68 0.54
40 22 0.17
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:103482319 original size:77 final size:78
Alignment explanation
Indices: 103482228--103482406 Score: 245
Period size: 77 Copynumber: 2.3 Consensus size: 78
103482218 ATAATGGAGA
* *
103482228 ATTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGT-CCAAAG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAAGTCCCAAAG
103482291 GCATTCGTGCTGGT
66 GC-TTCGTGCTGGT
* * **
103482305 GTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAAGTCCCGTAG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAAGTCCCAAAG
*
103482370 GCTTTGTGCTGGT
66 GCTTCGTGCTGGT
*
103482383 ATTATATCCAGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
103482407 CATGCTTTGT
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 49 0.56
78 24 0.27
79 7 0.08
80 8 0.09
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (78 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAAGTCCCAAAG
GCTTCGTGCTGGT
Found at i:103491950 original size:24 final size:25
Alignment explanation
Indices: 103491918--103491979 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
103491908 CAACTAGAAA
* *
103491918 GAGCCTCCCGTTAT-TAGCCCTTTC
1 GAGCTTCCCGTTATATAGCCCTTGC
* **
103491942 GAGCTTCCCGTTATATGGTTCTTGC
1 GAGCTTCCCGTTATATAGCCCTTGC
103491967 GAGCTTCCCGTTA
1 GAGCTTCCCGTTA
103491980 CAACCTCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 13 0.41
25 19 0.59
ACGTcount: A:0.13, C:0.31, G:0.21, T:0.35
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCCCTTGC
Found at i:103494599 original size:29 final size:29
Alignment explanation
Indices: 103494571--103494702 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
103494561 CCTCCGAGCT
** * * *
103494571 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103494600 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103494629 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103494658 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103494687 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103494703 ATCTCGTCAC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103494613 original size:87 final size:87
Alignment explanation
Indices: 103494513--103494702 Score: 206
Period size: 87 Copynumber: 2.2 Consensus size: 87
103494503 TACTCGATTT
* * *
103494513 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCTCGCA
1 CGCACACTTAGTGCCA--TATATTTCAAGCACGCACACACAGTGCCATATACCTCC-AGCACGCA
* * *
103494575 CACCCAGTGCCGTATTTTTCCAGCT
63 CACCCAGTGCCATATATTTCCAGCA
* * ** **
103494600 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
**
103494665 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
103494687 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103494703 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
85 2 0.02
86 4 0.05
87 76 0.89
88 3 0.04
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCATATATTTCAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:103502011 original size:20 final size:20
Alignment explanation
Indices: 103501988--103502046 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 20
103501978 AAACAATGTG
103501988 AGATTCTAATAACATCTCTT
1 AGATTCTAATAACATCTCTT
* *
103502008 AGA-T-T-ATCA-ATCAC-T
1 AGATTCTAATAACATCTCTT
103502023 A-ATTCTAATAACATCTCTT
1 AGATTCTAATAACATCTCTT
103502042 AGATT
1 AGATT
103502047 ATCAATCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
14 1 0.03
15 3 0.10
16 5 0.17
17 6 0.21
18 5 0.17
19 3 0.10
20 6 0.21
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (20 bp):
AGATTCTAATAACATCTCTT
Found at i:103502033 original size:34 final size:34
Alignment explanation
Indices: 103501990--103502058 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
103501980 ACAATGTGAG
103501990 ATTCTAATAACATCTCTTAGATTATCAATCACTA
1 ATTCTAATAACATCTCTTAGATTATCAATCACTA
103502024 ATTCTAATAACATCTCTTAGATTATCAATCACTA
1 ATTCTAATAACATCTCTTAGATTATCAATCACTA
103502058 A
1 A
103502059 GTCACTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (34 bp):
ATTCTAATAACATCTCTTAGATTATCAATCACTA
Found at i:103506333 original size:15 final size:15
Alignment explanation
Indices: 103506313--103506351 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
103506303 GAATGAAGAG
* *
103506313 AATGAATGGATGAGT
1 AATGAATGAATGAAT
103506328 AATGAATGAATGAAT
1 AATGAATGAATGAAT
*
103506343 GATGAATGA
1 AATGAATGA
103506352 TTTTAGGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.26
Consensus pattern (15 bp):
AATGAATGAATGAAT
Found at i:103511382 original size:48 final size:48
Alignment explanation
Indices: 103510965--103511389 Score: 742
Period size: 48 Copynumber: 8.9 Consensus size: 48
103510955 TATATATGTG
* *
103510965 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
103511013 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
103511061 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
103511109 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATTTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
103511157 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
103511205 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
103511253 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
103511301 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
103511349 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
103511390 GTGTGTATAT
Statistics
Matches: 363, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 363 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:103512932 original size:40 final size:40
Alignment explanation
Indices: 103512879--103513197 Score: 530
Period size: 40 Copynumber: 8.0 Consensus size: 40
103512869 TTGAGAGTTA
*
103512879 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
103512919 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
103512959 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
103512999 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
103513039 TATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
103513079 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
103513119 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
103513159 TATATCCGGGCTAGGTCCCGAAGACCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
103513198 ATGTGCATTC
Statistics
Matches: 260, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:103516617 original size:48 final size:48
Alignment explanation
Indices: 103516555--103517411 Score: 1402
Period size: 48 Copynumber: 17.9 Consensus size: 48
103516545 TATATATGTG
*
103516555 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
103516603 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* * * * *
103516651 TGTGATAAAGCCGAACGGCTAATGTGCAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
103516699 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
103516747 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGA-ATTG-GATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATA-TGAGATATGTATA
* *
103516795 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATATATCAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
103516843 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
103516891 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
103516939 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
103516987 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
103517035 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
103517083 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
103517131 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
103517179 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATAGGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
*
103517227 TGTTGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
103517275 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT-ATATGAGATATGTATA
*
103517323 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
* *
103517371 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
103517412 GTGTGTATAT
Statistics
Matches: 774, Mismatches: 27, Indels: 16
0.95 0.03 0.02
Matches are distributed among these distances:
47 2 0.00
48 769 0.99
49 3 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
Found at i:103517099 original size:28 final size:28
Alignment explanation
Indices: 103517067--103517147 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
103517057 TGTGAAATAT
103517067 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
* ***
103517095 GAATG-GCTA-G----TGT-G-AAATAT
1 GAATGAGATATGTATATGTGGTAAAGCC
103517115 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
103517143 GAATG
1 GAATG
103517148 GCTAGTGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.22
21 4 0.11
22 4 0.11
26 4 0.11
27 4 0.11
28 13 0.35
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (28 bp):
GAATGAGATATGTATATGTGGTAAAGCC
Found at i:103517602 original size:37 final size:37
Alignment explanation
Indices: 103517552--103517654 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
103517542 GGAAATATAT
103517552 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
103517589 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
103517626 TCCGGGTAAGACCCGATAACTACGCGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
103517655 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:103521861 original size:40 final size:39
Alignment explanation
Indices: 103521735--103521863 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
103521725 CGGAATATAA
103521735 CCGGATATAACCA-TGTGCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAATGCCTTCGGGTCTTAGC
* ** *
103521774 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCAC-AATGCCTTCGGGTCTTAGC
* *
103521814 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAA-TGCCTTCGGGTCTTAGC
103521854 CCGGATATAA
1 CCGGATATAA
103521864 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 16 0.21
40 60 0.79
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTTGCACAATGCCTTCGGGTCTTAGC
Found at i:103521878 original size:40 final size:39
Alignment explanation
Indices: 103521751--103521900 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
103521741 ATAACCATGT
* *
103521751 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
103521790 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
103521830 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
103521869 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
103521901 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
39 19 0.20
40 75 0.80
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:103521884 original size:80 final size:78
Alignment explanation
Indices: 103521735--103521900 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 78
103521725 CGGAATATAA
*
103521735 CCGGATATAACCATGTGCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGC
1 CCGGATATAACCATGTGCACAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGC
103521800 CTTCGGGTCTTAGC
66 CTTCGGG-CTTAGC
* * ** *
103521814 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAA-TGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
103521876 TTGTCTTCGGGCTTAGC
63 -TGCCTTCGGGCTTAGC
103521893 CCGGATAT
1 CCGGATAT
103521901 CATTCAATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
79 36 0.47
80 40 0.53
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (78 bp):
CCGGATATAACCATGTGCACAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGC
CTTCGGGCTTAGC
Found at i:103529809 original size:40 final size:40
Alignment explanation
Indices: 103529764--103529893 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
103529754 CGGAATATAA
103529764 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
103529804 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
103529844 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
103529884 CCGGATATAA
1 CCGGATATAA
103529894 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:103529908 original size:40 final size:39
Alignment explanation
Indices: 103529780--103529930 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
103529770 ATAACCATGT
* * *
103529780 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
103529820 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
103529860 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
103529899 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
103529931 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:103529914 original size:80 final size:79
Alignment explanation
Indices: 103529764--103529930 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
103529754 CGGAATATAA
*
103529764 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
103529829 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
103529844 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
103529906 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
103529923 CCGGATAT
1 CCGGATAT
103529931 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:103533615 original size:38 final size:40
Alignment explanation
Indices: 103533492--103533671 Score: 176
Period size: 38 Copynumber: 4.6 Consensus size: 40
103533482 TCGAATGATG
* * *
103533492 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
103533532 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
103533572 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * *
103533610 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-T-CTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
103533649 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
103533672 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
38 45 0.38
39 26 0.22
40 39 0.33
41 7 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:103533637 original size:78 final size:79
Alignment explanation
Indices: 103533492--103533671 Score: 217
Period size: 78 Copynumber: 2.3 Consensus size: 79
103533482 TCGAATGATG
* * * *
103533492 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
103533557 GTGCGAGT-TAATAAA
66 GTGCGAGTCT-AT-AA
* **
103533572 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
103533634 CGTGCGAGTCTATAA
65 CGTGCGAGTCTATAA
**
103533649 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
103533672 TGAGCGAGTC
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
76 8 0.09
77 15 0.17
78 38 0.43
79 16 0.18
80 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCTATAA
Found at i:103541569 original size:39 final size:40
Alignment explanation
Indices: 103541469--103541650 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
103541459 TCGAATGATG
* * *
103541469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
103541509 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
103541549 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
103541587 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
103541628 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
103541651 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:103541614 original size:78 final size:80
Alignment explanation
Indices: 103541469--103541650 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
103541459 TCGAATGATG
* * * *
103541469 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
103541534 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
103541549 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
103541611 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
103541628 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
103541651 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:103548832 original size:49 final size:47
Alignment explanation
Indices: 103548748--103549109 Score: 546
Period size: 47 Copynumber: 7.6 Consensus size: 47
103548738 GATATTAAAA
103548748 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
103548795 GAATGTGAAGGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGAT
*
103548844 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
103548891 GAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
103548940 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
103548987 GAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATG-GAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * *
103549035 GAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
103549082 GGATGTGGAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
103549110 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 17, Indels: 14
0.90 0.05 0.04
Matches are distributed among these distances:
46 26 0.09
47 130 0.45
48 15 0.05
49 120 0.41
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:103548877 original size:96 final size:96
Alignment explanation
Indices: 103548748--103549109 Score: 597
Period size: 96 Copynumber: 3.8 Consensus size: 96
103548738 GATATTAAAA
103548748 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATAT
103548813 AAATGTGATAAGGCCTAATGGCCGATGTGAT
66 AAATGTGATAAGGCCTAATGGCCGATGTGAT
*
103548844 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAGGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATAT
*
103548909 ATATGTGATAAGGCCTAATGGCCGATGTGAT
66 AAATGTGATAAGGCCTAATGGCCGATGTGAT
103548940 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATAT
* *
103549005 ATATGTGATAAGGCCTAATGGCCAATG-GAT
66 AAATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
103549035 GAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG--TA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAGGTGTATA
103549097 TAAATGTGATAAG
65 TAAATGTGATAAG
103549110 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
93 14 0.06
95 53 0.21
96 187 0.74
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATAT
AAATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:103561570 original size:18 final size:18
Alignment explanation
Indices: 103561547--103561587 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
103561537 GCAGATCCAG
103561547 CTCGACCACGGCCTCTTC
1 CTCGACCACGGCCTCTTC
103561565 CTCGACCACGGCCTCTTC
1 CTCGACCACGGCCTCTTC
103561583 CTCGA
1 CTCGA
103561588 GTAGCCCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.49, G:0.17, T:0.22
Consensus pattern (18 bp):
CTCGACCACGGCCTCTTC
Found at i:103564021 original size:19 final size:19
Alignment explanation
Indices: 103563997--103564035 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
103563987 AAGCTAAAGT
103563997 AAGCCAACACATTTGGCCA
1 AAGCCAACACATTTGGCCA
103564016 AAGCCAACACATTTGGCCA
1 AAGCCAACACATTTGGCCA
103564035 A
1 A
103564036 TTAACAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (19 bp):
AAGCCAACACATTTGGCCA
Done.