Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 334 of 410
Found at i:103564766 original size:46 final size:47
Alignment explanation
Indices: 103564487--103564894 Score: 274
Period size: 47 Copynumber: 8.7 Consensus size: 47
103564477 AGGGTATAAT
*
103564487 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CATCCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACAT-C-TCGTA
* * * *
103564534 GTCAATGCCATGACCCAGACATGGTCTTACACTGGCT-CATCCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACAT-C-TCGTA
* * * * **
103564581 GTCGATGCCATGTCCTAGACATGGTCTTACATTGACTATCGAAATCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATCTCGTA
* * * * *
103564629 GGCCAAAGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCTGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ACATCTC-GTA
* * **
103564680 GCCGATGCCATGTCCCAGACATGGTCTCACATTAAC-ACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGTA
103564726 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCGTA
* * * * *
103564771 GGCCGATG-CATGTCCCAAACA-GGTCTTACACTAGCTCTCAGCTCATTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACATCTC-GTA
* * *
103564819 -CCGATGCCATGTCCCAAACATGGTCTTACACTGGTTCT-CATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTACAT-CTCGTA
*
103564866 GCCGATG-CATGTCCCAGAAAT-GTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
103564895 TTAGCACACA
Statistics
Matches: 295, Mismatches: 42, Indels: 49
0.76 0.11 0.13
Matches are distributed among these distances:
44 9 0.03
45 18 0.06
46 71 0.24
47 102 0.35
48 25 0.08
49 29 0.10
50 36 0.12
51 4 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGTA
Found at i:103564871 original size:140 final size:143
Alignment explanation
Indices: 103564493--103564894 Score: 363
Period size: 140 Copynumber: 2.8 Consensus size: 143
103564483 TAATGCCGAT
* * * * *
103564493 GCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAT-CAAGT--CAATGCCATGACCCAGAC
1 GCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATAC-TGTACCGATGCCATGTCCCAGAC
* * *
103564554 ATGGTCTTACACTGGCTCATCCATCAA-GT--CGATGCCATGTCCTAGACATGGTCTTACATTGA
64 ATGGTCTTACACTGGTTC-T-CAT-AATGTGCCGATG-CATGTCCCAGACAT-GTCTTACACTGA
103564616 CTATCGAAATCGAGGCCAAA
124 CTATCGAAATCGAGGCCAAA
*
103564636 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCTGTGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATA-CTGTACCGATGCCATGTCCCAGACA
* * * * *
103564701 TGGTCTCACA-T--TAACACAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-
65 TGGTCTTACACTGGT-TCTCATAAT-GT-GCCGATGCATGTCCCAGACATGTCTTACACTGACTA
** * *
103564761 TAC-ATCTCGAGGCCGAT
127 T-CGAAATCGAGGCCAAA
*
103564778 G-CATGTCCCAAACA-GGTCTTACACTAGCTCTCAGC-T-CAT-TACCGATGCCATGTCCCAAAC
1 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CATAC-TGTACCGATGCCATGTCCCAGAC
*
103564838 ATGGTCTTACACTGGTTCTCATAATGTGGCCGATGCATGTCCCAGAAATGTCTTACA
64 ATGGTCTTACACTGGTTCTCATAATGT-GCCGATGCATGTCCCAGACATGTCTTACA
103564895 TTAGCACACA
Statistics
Matches: 216, Mismatches: 25, Indels: 39
0.77 0.09 0.14
Matches are distributed among these distances:
138 30 0.14
139 2 0.01
140 54 0.25
141 16 0.07
142 19 0.09
143 46 0.21
144 16 0.07
145 7 0.03
146 26 0.12
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (143 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATACTGTACCGATGCCATGTCCCAGACAT
GGTCTTACACTGGTTCTCATAATGTGCCGATGCATGTCCCAGACATGTCTTACACTGACTATCGA
AATCGAGGCCAAA
Found at i:103582207 original size:39 final size:39
Alignment explanation
Indices: 103582152--103582320 Score: 167
Period size: 39 Copynumber: 4.3 Consensus size: 39
103582142 GTATGAGATT
* * * *
103582152 GAAAATATATCCGGACATGAGGTCCACAGTCTATATGCTG
1 GAAAA-ATATCCGGACATGAGATCCGCAGGCTATATGCTA
* *
103582192 GAAAAATATCTGGACATAAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
* * *
103582231 GAAATATATTCGGACATGAGATCCGCAAGCTATATGCTA
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
* * * * * ** *
103582270 GAAATATATCCAGACTTGAGGTCTGCAGGCTACGTGCTG
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
*
103582309 GAAAAATTTCCG
1 GAAAAATATCCG
103582321 AGTTAAAGAC
Statistics
Matches: 106, Mismatches: 23, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
39 101 0.95
40 5 0.05
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
Found at i:103582555 original size:2 final size:2
Alignment explanation
Indices: 103582550--103582577 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
103582540 TATATATATA
103582550 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
103582578 AATGAATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:103583904 original size:16 final size:16
Alignment explanation
Indices: 103583883--103583944 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 16
103583873 CATTAAAGTT
103583883 AATTTTTTTAATTTGG
1 AATTTTTTTAATTTGG
103583899 AATTTTTATTGATTCTATTTGGG
1 AATTTTT-TT-A----ATTT-GG
*
103583922 ATTTTTTTTAATTTGG
1 AATTTTTTTAATTTGG
103583938 AATTTTT
1 AATTTTT
103583945 ATTGATTCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
16 15 0.41
17 6 0.16
18 1 0.03
21 1 0.03
22 6 0.16
23 8 0.22
ACGTcount: A:0.23, C:0.02, G:0.13, T:0.63
Consensus pattern (16 bp):
AATTTTTTTAATTTGG
Found at i:103583925 original size:22 final size:22
Alignment explanation
Indices: 103583893--103583959 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
103583883 AATTTTTTTA
103583893 ATTTGGAATTTTTATTGATTCT
1 ATTTGGAATTTTTATTGATTCT
* *
103583915 ATTTGGGA-TTTT-TT--TT-A
1 ATTTGGAATTTTTATTGATTCT
103583932 ATTTGGAATTTTTATTGATTCT
1 ATTTGGAATTTTTATTGATTCT
103583954 ATTTGG
1 ATTTGG
103583960 GATTAATTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
17 7 0.19
18 6 0.17
19 2 0.06
20 2 0.06
21 6 0.17
22 13 0.36
ACGTcount: A:0.21, C:0.03, G:0.16, T:0.60
Consensus pattern (22 bp):
ATTTGGAATTTTTATTGATTCT
Found at i:103583937 original size:39 final size:39
Alignment explanation
Indices: 103583885--103583963 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
103583875 TTAAAGTTAA
103583885 TTTTTTTAATTTGGAATTTTTATTGATTCTATTTGGGAT
1 TTTTTTTAATTTGGAATTTTTATTGATTCTATTTGGGAT
103583924 TTTTTTTAATTTGGAATTTTTATTGATTCTATTTGGGAT
1 TTTTTTTAATTTGGAATTTTTATTGATTCTATTTGGGAT
103583963 T
1 T
103583964 AATTTGTGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.03, G:0.15, T:0.62
Consensus pattern (39 bp):
TTTTTTTAATTTGGAATTTTTATTGATTCTATTTGGGAT
Found at i:103584526 original size:13 final size:13
Alignment explanation
Indices: 103584508--103584533 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103584498 AAGAAAATAT
103584508 TATTATATTATTA
1 TATTATATTATTA
103584521 TATTATATTATTA
1 TATTATATTATTA
103584534 AAATAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:103584570 original size:19 final size:20
Alignment explanation
Indices: 103584548--103584585 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
103584538 AATAGTTAAA
*
103584548 AGAAATAATA-AAACAAAAT
1 AGAAATAAAAGAAACAAAAT
103584567 AGAAATAAAAGAAACAAAA
1 AGAAATAAAAGAAACAAAA
103584586 GATAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.11
Consensus pattern (20 bp):
AGAAATAAAAGAAACAAAAT
Found at i:103585243 original size:41 final size:41
Alignment explanation
Indices: 103585186--103585267 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
103585176 CGAGGAGTAG
*
103585186 CTCGAGAATTCTGGTTTGTATTTTTATAATCCAAATCTAAT
1 CTCGAGAATTCTGGTTTGTATTTCTATAATCCAAATCTAAT
*
103585227 CTCGAGAATTCTGGTTTGTATTTCTATAATCCGAATCTAAT
1 CTCGAGAATTCTGGTTTGTATTTCTATAATCCAAATCTAAT
103585268 AATTATTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (41 bp):
CTCGAGAATTCTGGTTTGTATTTCTATAATCCAAATCTAAT
Found at i:103585334 original size:25 final size:25
Alignment explanation
Indices: 103585300--103585355 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
103585290 TTAATATGCA
* *
103585300 TGGTAAGTGAAATTGCGATGAGTGT
1 TGGTATGTGAAATTACGATGAGTGT
103585325 TGGTATGTGAAATTACGATGAGTGT
1 TGGTATGTGAAATTACGATGAGTGT
103585350 TGGTAT
1 TGGTAT
103585356 TGTGGTATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.27, C:0.04, G:0.34, T:0.36
Consensus pattern (25 bp):
TGGTATGTGAAATTACGATGAGTGT
Found at i:103589074 original size:14 final size:15
Alignment explanation
Indices: 103589055--103589083 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
103589045 AGAGGTATAG
103589055 TAAATAT-TAAAAAA
1 TAAATATGTAAAAAA
103589069 TAAATATGTAAAAAA
1 TAAATATGTAAAAAA
103589084 AGAGACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
TAAATATGTAAAAAA
Found at i:103590390 original size:17 final size:17
Alignment explanation
Indices: 103590352--103590438 Score: 72
Period size: 18 Copynumber: 5.1 Consensus size: 17
103590342 GTAAATTTTC
*
103590352 TTTAAAAATTATTTAAAAT
1 TTTAAAAA-TA-TAAAAAT
*
103590371 TTTAAAAATATAACAATT
1 TTTAAAAATATAA-AAAT
103590389 TTTAAAAAT-TAAAAAT
1 TTTAAAAATATAAAAAT
* **
103590405 TTT-AGAAT-TTTAAAT
1 TTTAAAAATATAAAAAT
103590420 TTTAAAAATTATAAAAAT
1 TTTAAAAA-TATAAAAAT
103590438 T
1 T
103590439 ACAAAAAGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
15 12 0.22
16 9 0.16
17 6 0.11
18 20 0.36
19 8 0.15
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (17 bp):
TTTAAAAATATAAAAAT
Found at i:103590391 original size:18 final size:17
Alignment explanation
Indices: 103590352--103590407 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 17
103590342 GTAAATTTTC
103590352 TTTAAAAATTATTTAAAA-T
1 TTTAAAAATTA---AAAATT
*
103590371 TTTAAAAATATAACAATT
1 TTTAAAAAT-TAAAAATT
103590389 TTTAAAAATTAAAAATT
1 TTTAAAAATTAAAAATT
103590406 TT
1 TT
103590408 AGAATTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 12 0.36
18 10 0.30
19 9 0.27
20 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAAAAATTAAAAATT
Found at i:103590435 original size:8 final size:8
Alignment explanation
Indices: 103590363--103590426 Score: 58
Period size: 8 Copynumber: 7.9 Consensus size: 8
103590353 TTAAAAATTA
103590363 TTTAAAAT
1 TTTAAAAT
*
103590371 TTTAAAAA
1 TTTAAAAT
*
103590379 TATAACAATT
1 TTTAA-AA-T
*
103590389 TTTAAAAA
1 TTTAAAAT
*
103590397 TTAAAAAT
1 TTTAAAAT
*
103590405 TTTAGAAT
1 TTTAAAAT
103590413 TTT-AAAT
1 TTTAAAAT
103590420 TTTAAAA
1 TTTAAAA
103590427 ATTATAAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
7 6 0.14
8 29 0.67
9 4 0.09
10 4 0.09
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (8 bp):
TTTAAAAT
Found at i:103591066 original size:22 final size:22
Alignment explanation
Indices: 103591041--103591084 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
103591031 TAGTCATATA
103591041 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
103591063 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
103591085 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:103591120 original size:13 final size:14
Alignment explanation
Indices: 103591104--103591145 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
103591094 TTTCAATTTT
103591104 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
103591117 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
103591132 ATTTTAAATAATAT
1 ATTTT-AATAATAT
103591146 TATTCACGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:103591130 original size:16 final size:16
Alignment explanation
Indices: 103591108--103591144 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
103591098 AATTTTATTT
103591108 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
103591125 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
103591140 TAATA
1 TAATA
103591145 TTATTCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:103591197 original size:15 final size:15
Alignment explanation
Indices: 103591177--103591233 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
103591167 ATTCAATATT
103591177 AATATTTTAATAATA
1 AATATTTTAATAATA
*
103591192 AATATTTATTGCAATTATA
1 AATA-TT-TT--AATAATA
*
103591211 AATATATTAATAATA
1 AATATTTTAATAATA
103591226 AATATTTT
1 AATATTTT
103591234 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:103593764 original size:2 final size:2
Alignment explanation
Indices: 103593757--103593787 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
103593747 GAAGTATGTT
103593757 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103593788 TCAAGGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103594311 original size:4 final size:4
Alignment explanation
Indices: 103594302--103594365 Score: 83
Period size: 4 Copynumber: 16.0 Consensus size: 4
103594292 TATCTCTGTG
* **
103594302 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CGTA TGTA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
103594350 CGTA CGTA CATA CATA
1 CATA CATA CATA CATA
103594366 AATATGAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (4 bp):
CATA
Found at i:103604222 original size:135 final size:132
Alignment explanation
Indices: 103603983--103604246 Score: 379
Period size: 135 Copynumber: 2.0 Consensus size: 132
103603973 GAAGTGCATG
* * *
103603983 GTTTGTTTCCTCAGCAAAGCAACTACTGCTAATTTTAAGGTGACTACTATCACTGTTTTCAGGAA
1 GTTTGCTTCCTCACCAAAGCAACTACTGCTAACTTTAAGGTGACTACTATCACTGTTTTCAGGAA
* * *
103604048 AAGTGCTTCTCGGATCCATGCATTCTAGAAGTCCATTAGGAACAGATTGGCAAAGACTAGTTGCA
66 AAGTGCTCCTCAGATCCATGCATTCTAGAAGTCCATTAGGAACAGATTGGCAAAGACCAGTTGCA
103604113 CA
131 CA
*
103604115 GTTTGCTTCCTCACCAAAGCAACTACTGCTAACTTTAAGGTGACTTTTTCTATCA-TCGCTTTT-
1 GTTTGCTTCCTCACCAAAGCAACTACTGCTAACTTTAAGGTGAC---TACTATCACT-G-TTTTC
* * *
103604178 AGGAAGAGTGCTCCTCAGATCCATGCATTCTAGAAGTCCTTTAGGAACAGATTGGTAAAGACCAG
61 AGGAAAAGTGCTCCTCAGATCCATGCATTCTAGAAGTCCATTAGGAACAGATTGGCAAAGACCAG
103604243 TTGC
126 TTGC
103604247 TTGGTGCATT
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
132 41 0.35
134 1 0.01
135 71 0.61
136 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (132 bp):
GTTTGCTTCCTCACCAAAGCAACTACTGCTAACTTTAAGGTGACTACTATCACTGTTTTCAGGAA
AAGTGCTCCTCAGATCCATGCATTCTAGAAGTCCATTAGGAACAGATTGGCAAAGACCAGTTGCA
CA
Found at i:103609229 original size:3 final size:3
Alignment explanation
Indices: 103609221--103609261 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
103609211 TCGACATTGC
*
103609221 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCC TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
103609262 CTCAATAGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TCT
Found at i:103609747 original size:18 final size:18
Alignment explanation
Indices: 103609719--103609756 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
103609709 TGATTTTTTT
103609719 AAATGATAAAAATTATTAA
1 AAATGATAAAAATTA-TAA
*
103609738 AAAT-ATAAAACTTATAA
1 AAATGATAAAAATTATAA
103609755 AA
1 AA
103609757 GGAGTAGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 9 0.50
19 4 0.22
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AAATGATAAAAATTATAA
Found at i:103610289 original size:9 final size:9
Alignment explanation
Indices: 103610271--103610337 Score: 52
Period size: 9 Copynumber: 7.3 Consensus size: 9
103610261 AACATAATAA
103610271 TAAT-TTTT
1 TAATATTTT
103610279 TAATATTTT
1 TAATATTTT
103610288 TAATAATTTT
1 TAAT-ATTTT
103610298 T-ATAGTTTT
1 TAATA-TTTT
103610307 CT-ATAATTTT
1 -TAAT-ATTTT
103610317 ATAATA-TTT
1 -TAATATTTT
*
103610326 TAATAATTT
1 TAATATTTT
103610335 TAA
1 TAA
103610338 GCTAAAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
8 10 0.20
9 23 0.45
10 15 0.29
11 3 0.06
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (9 bp):
TAATATTTT
Found at i:103610327 original size:10 final size:11
Alignment explanation
Indices: 103610267--103610336 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
103610257 TCATAACATA
103610267 ATAATAATTTT
1 ATAATAATTTT
*
103610278 TTAAT-ATTTT
1 ATAATAATTTT
103610288 -TAATAATTTT
1 ATAATAATTTT
*
103610298 -T-ATAGTTTT
1 ATAATAATTTT
*
103610307 CT-ATAATTTT
1 ATAATAATTTT
103610317 ATAAT-A-TTT
1 ATAATAATTTT
103610326 -TAATAATTTT
1 ATAATAATTTT
103610336 A
1 A
103610337 AGCTAAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
8 4 0.08
9 15 0.31
10 24 0.49
11 6 0.12
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (11 bp):
ATAATAATTTT
Found at i:103610336 original size:19 final size:20
Alignment explanation
Indices: 103610268--103610336 Score: 81
Period size: 19 Copynumber: 3.5 Consensus size: 20
103610258 CATAACATAA
* *
103610268 TAATAATTTTTTAATATTTT
1 TAATAATTTTATAATAGTTT
103610288 TAATAATTTT-T-ATAGTTT
1 TAATAATTTTATAATAGTTT
*
103610306 TCTATAATTTTATAATA-TTT
1 T-AATAATTTTATAATAGTTT
103610326 TAATAATTTTA
1 TAATAATTTTA
103610337 AGCTAAAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.16
19 18 0.42
20 15 0.35
21 3 0.07
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (20 bp):
TAATAATTTTATAATAGTTT
Found at i:103610391 original size:19 final size:20
Alignment explanation
Indices: 103610341--103610391 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
103610331 ATTTTAAGCT
*
103610341 AAAATAATTAAAAATCAATTA
1 AAAACAATT-AAAATCAATTA
** *
103610362 AACCCATTTAAAAT-AATTA
1 AAAACAATTAAAATCAATTA
103610381 AAAACAATTAA
1 AAAACAATTAA
103610392 TTTCTCACGT
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
19 13 0.57
20 5 0.22
21 5 0.22
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAACAATTAAAATCAATTA
Found at i:103611118 original size:14 final size:15
Alignment explanation
Indices: 103611101--103611135 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
103611091 TTTACTTCTT
103611101 AAAATTTAAAA-AAA
1 AAAATTTAAAAGAAA
*
103611115 AAAATTTAAAAGTAA
1 AAAATTTAAAAGAAA
103611130 AAAATT
1 AAAATT
103611136 ACTTAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAGAAA
Found at i:103620013 original size:220 final size:221
Alignment explanation
Indices: 103619630--103620042 Score: 774
Period size: 220 Copynumber: 1.9 Consensus size: 221
103619620 CTTATTAGAA
*
103619630 GTTTACAAATTGCAGTAGGATTTTCGCATGAGGCCTTAGAAATATCAATTTTAAAAAAAGGCTAC
1 GTTTACAAATTGCAGTAGGATTTTCGCATGAGGCCTTAGAAATATCAATTTTAAAAAAAGGCCAC
* *
103619695 AACCGTAAGATCTTTTGTCACAGAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCTGTATTG
66 AACCGTAAGATCTTCTATCACAGAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCTGTATTG
103619760 ATAATTTGCAAGCCTTTAGGAGCCCATTTCACCATTACACTTAGTATATAAAGCTTCATGGTTTC
131 ATAATTTGCAAGCCTTTAGGAGCCCATTTCACCATTACACTTAGTATATAAAGCTTCATGGTTTC
103619825 ACATCTCAAACATCAGGGCTCATGAT
196 ACATCTCAAACATCAGGGCTCATGAT
*
103619851 GTTTACAAATTGCAGTAGGATTTTCGCATGAGGCGTTAGAAATATCAATTTT-AAAAAAGGCCAC
1 GTTTACAAATTGCAGTAGGATTTTCGCATGAGGCCTTAGAAATATCAATTTTAAAAAAAGGCCAC
103619915 AACCGTAAGATCTTCTATCACAGAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCTGTATTG
66 AACCGTAAGATCTTCTATCACAGAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCTGTATTG
*
103619980 ATAATTTGCAAGCCTTTAGGAGCCCATTTCACCATTACACTTAGTTTATAAAGCTTCATGGTT
131 ATAATTTGCAAGCCTTTAGGAGCCCATTTCACCATTACACTTAGTATATAAAGCTTCATGGTT
103620043 AAGGGAACTT
Statistics
Matches: 187, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
220 136 0.73
221 51 0.27
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (221 bp):
GTTTACAAATTGCAGTAGGATTTTCGCATGAGGCCTTAGAAATATCAATTTTAAAAAAAGGCCAC
AACCGTAAGATCTTCTATCACAGAGCTCACTAAGAAGCTTTCATGCAAAATAGAACTCTGTATTG
ATAATTTGCAAGCCTTTAGGAGCCCATTTCACCATTACACTTAGTATATAAAGCTTCATGGTTTC
ACATCTCAAACATCAGGGCTCATGAT
Found at i:103620503 original size:7 final size:7
Alignment explanation
Indices: 103620491--103620519 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
103620481 GACACCACAA
103620491 ACTTGAC
1 ACTTGAC
103620498 ACTTGAC
1 ACTTGAC
103620505 ACTTGAC
1 ACTTGAC
103620512 ACTTGAC
1 ACTTGAC
103620519 A
1 A
103620520 TGTAACATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (7 bp):
ACTTGAC
Found at i:103626991 original size:3 final size:3
Alignment explanation
Indices: 103626983--103627007 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
103626973 AAAAGTAGAT
103626983 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
103627008 AAGGTTTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:103629528 original size:38 final size:36
Alignment explanation
Indices: 103629447--103629530 Score: 91
Period size: 38 Copynumber: 2.3 Consensus size: 36
103629437 TTATTTAAAC
103629447 TTAAAAAT-TATTAAAATATTCTAATAAATTAAAAA
1 TTAAAAATATATTAAAATATTCTAATAAATTAAAAA
* * *
103629482 ATATAAAATACTATTAATATATAT-TAATAAATATGAAAA
1 TTA-AAAATA-TATTAAAATAT-TCTAATAAAT-TAAAAA
103629521 TTAAAAATAT
1 TTAAAAATAT
103629531 GATAACTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
35 2 0.05
36 5 0.12
37 1 0.03
38 24 0.60
39 8 0.20
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (36 bp):
TTAAAAATATATTAAAATATTCTAATAAATTAAAAA
Found at i:103629603 original size:20 final size:20
Alignment explanation
Indices: 103629580--103629632 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 20
103629570 AAATTAGGAA
103629580 AAAATTATAAAAAAAATATT
1 AAAATTATAAAAAAAATATT
* *
103629600 AAAATGAT--AAAAGATATT
1 AAAATTATAAAAAAAATATT
103629618 ACAAATTATTAAAAA
1 A-AAATTA-TAAAAA
103629633 TTATAAAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 10 0.38
19 5 0.19
20 8 0.31
22 3 0.12
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (20 bp):
AAAATTATAAAAAAAATATT
Found at i:103629662 original size:2 final size:2
Alignment explanation
Indices: 103629651--103629686 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
103629641 GTTAAAGAAG
103629651 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103629687 TGTTATTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:103630114 original size:20 final size:20
Alignment explanation
Indices: 103630077--103630115 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
103630067 ATAATTTCTA
*
103630077 AAAATCAATTAAATAATCAT
1 AAAATCAATTAAAAAATCAT
103630097 AAAAT-AATTAGAAAAATCA
1 AAAATCAATTA-AAAAATCA
103630116 ATTAAATCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAATCAATTAAAAAATCAT
Found at i:103633340 original size:26 final size:26
Alignment explanation
Indices: 103633311--103633362 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
103633301 CGAGCCCGTA
103633311 AGTTGGTTAACTAGTAATTCAACATG
1 AGTTGGTTAACTAGTAATTCAACATG
* *
103633337 AGTTGGTTTACTTGTAATTCAACATG
1 AGTTGGTTAACTAGTAATTCAACATG
103633363 TACTTGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (26 bp):
AGTTGGTTAACTAGTAATTCAACATG
Found at i:103646074 original size:2 final size:2
Alignment explanation
Indices: 103646067--103646095 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
103646057 ATTTGGTATT
103646067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103646096 TTTTGGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103646542 original size:33 final size:32
Alignment explanation
Indices: 103646463--103646542 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
103646453 TATTTAACAG
103646463 GTTTAGGTACCAAATTAAGAAAAAAATATCAA
1 GTTTAGGTACCAAATTAAGAAAAAAATATCAA
* * * * *
103646495 GTTCAGATATCAAATTAAGAAAAAAAGTGTTAA
1 GTTTAGGTACCAAATTAAGAAAAAAA-TATCAA
*
103646528 TTTTAGGTACCAAAT
1 GTTTAGGTACCAAAT
103646543 ATTATGTTAA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 23 0.61
33 15 0.39
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (32 bp):
GTTTAGGTACCAAATTAAGAAAAAAATATCAA
Found at i:103646743 original size:6 final size:6
Alignment explanation
Indices: 103646732--103646769 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
103646722 TGTTTTTTTT
103646732 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT
103646770 TTATAATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:103651180 original size:37 final size:38
Alignment explanation
Indices: 103651128--103651199 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 38
103651118 TGATTTTTAG
* *
103651128 ATTTTTTGAATTTCAATTAGATTTTAAGTTTTAGTTTT
1 ATTTTTTGAAATTCAATTAGATTTCAAGTTTTAGTTTT
103651166 ATTTTTT-AAATTCAATTAGATTTCAAGTTTTAGT
1 ATTTTTTGAAATTCAATTAGATTTCAAGTTTTAGT
103651200 AAGATTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 25 0.78
38 7 0.22
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.57
Consensus pattern (38 bp):
ATTTTTTGAAATTCAATTAGATTTCAAGTTTTAGTTTT
Found at i:103651207 original size:37 final size:38
Alignment explanation
Indices: 103651126--103651208 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 38
103651116 TTTGATTTTT
* * *
103651126 AGATTTTTTGAATTTCAATTAGATTTTAAGTTTTAGTT
1 AGATTTTTTGAAATTCAATTAGATTTCAAGTTTTAGTA
**
103651164 TTATTTTTT-AAATTCAATTAGATTTCAAGTTTTAGTA
1 AGATTTTTTGAAATTCAATTAGATTTCAAGTTTTAGTA
103651201 AGATTTTT
1 AGATTTTT
103651209 AGATTTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 31 0.82
38 7 0.18
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (38 bp):
AGATTTTTTGAAATTCAATTAGATTTCAAGTTTTAGTA
Found at i:103651452 original size:26 final size:28
Alignment explanation
Indices: 103651408--103651461 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
103651398 ATTATTTCTT
103651408 TTAAGTTAAGATTAGATTTTTAA-ATTA
1 TTAAGTTAAGATTAGATTTTTAATATTA
* *
103651435 TTAAGTTTA-ATTATATTTTTAATATTA
1 TTAAGTTAAGATTAGATTTTTAATATTA
103651462 AATTAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (28 bp):
TTAAGTTAAGATTAGATTTTTAATATTA
Found at i:103652961 original size:22 final size:22
Alignment explanation
Indices: 103652926--103652974 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
103652916 TTCTGAATAT
* *
103652926 AATTATTTTGATTTCAAAGTT-A
1 AATTATATTAATTT-AAAGTTGA
*
103652948 AATTATATTAATTTAAATTTGA
1 AATTATATTAATTTAAAGTTGA
103652970 AATTA
1 AATTA
103652975 AAATAAGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (22 bp):
AATTATATTAATTTAAAGTTGA
Found at i:103654678 original size:16 final size:17
Alignment explanation
Indices: 103654647--103654679 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
103654637 TTCATAAGTA
103654647 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
103654664 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
103654680 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:103655092 original size:16 final size:14
Alignment explanation
Indices: 103655079--103655109 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
103655069 TGCCATGGTA
103655079 TCTTTCAACCATGG
1 TCTTTCAACCATGG
103655093 -CTTTCAACCATGG
1 TCTTTCAACCATGG
103655106 TCTT
1 TCTT
103655110 ACATATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.81
14 3 0.19
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.39
Consensus pattern (14 bp):
TCTTTCAACCATGG
Found at i:103655108 original size:59 final size:59
Alignment explanation
Indices: 103655034--103655151 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
103655024 GCCATGGTAT
*
103655034 CTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGG
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
*
103655093 CTTTCAACCATGGTCTTACATATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
103655152 TCTTACACAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (59 bp):
CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
Found at i:103659189 original size:37 final size:37
Alignment explanation
Indices: 103659140--103659225 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 37
103659130 TTAGTTGAAG
103659140 ATAGAAAAATTGGCGTAATGGAGGAATGGACAGATTGA
1 ATAG-AAAATTGGCGTAATGGAGGAATGGACAGATTGA
103659178 ATAGAAAATTGGCGTAATGGAGGAATGGACAGATTGA
1 ATAGAAAATTGGCGTAATGGAGGAATGGACAGATTGA
*
103659215 AT-GAGAATTGG
1 ATAGAAAATTGG
103659226 AGTCACTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 8 0.17
37 35 0.74
38 4 0.09
ACGTcount: A:0.41, C:0.05, G:0.33, T:0.22
Consensus pattern (37 bp):
ATAGAAAATTGGCGTAATGGAGGAATGGACAGATTGA
Found at i:103659359 original size:35 final size:35
Alignment explanation
Indices: 103659315--103659394 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 35
103659305 TTGGATGGAT
* * * * *
103659315 AAATAATCTACTGGTTCTAAAGAATGACATCATGG
1 AAATGATCTACTGGCTCTAAAGAACGACACCATGA
*
103659350 AAATGATCTACTGGCTCTACAGAACGACACCATGA
1 AAATGATCTACTGGCTCTAAAGAACGACACCATGA
*
103659385 AAATGGTCTA
1 AAATGATCTA
103659395 TTGACTCTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (35 bp):
AAATGATCTACTGGCTCTAAAGAACGACACCATGA
Found at i:103661031 original size:25 final size:25
Alignment explanation
Indices: 103660986--103661035 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
103660976 TTAGTGTTAG
* *
103660986 CGATTCATAGCTCGTGAGAGCATAC
1 CGATTCATAACTCATGAGAGCATAC
103661011 CGATTCATAACTCAT-ATGAGCATAC
1 CGATTCATAACTCATGA-GAGCATAC
103661036 ATGTACATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (25 bp):
CGATTCATAACTCATGAGAGCATAC
Found at i:103662293 original size:41 final size:42
Alignment explanation
Indices: 103662248--103662328 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
103662238 CTGGCACACA
*
103662248 GGCGTGTGGGGTTACAT-TAAGGGTACACAGCCTGACACATG
1 GGCGTGTGGGGTTACATCGAAGGGTACACAGCCTGACACATG
* * *
103662289 GGCGTGTGGGGTTACATCGAAGGGTGCACGGCCTGGCACA
1 GGCGTGTGGGGTTACATCGAAGGGTACACAGCCTGACACA
103662329 CAGGTGTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
41 17 0.49
42 18 0.51
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.20
Consensus pattern (42 bp):
GGCGTGTGGGGTTACATCGAAGGGTACACAGCCTGACACATG
Found at i:103662338 original size:42 final size:41
Alignment explanation
Indices: 103662231--103662339 Score: 146
Period size: 41 Copynumber: 2.6 Consensus size: 41
103662221 ACGGCCTAGC
*
103662231 ACACGGCCTGGCACACAGGCGTGTGGGGTTACATTAAGGGT
1 ACACGGCCTGGCACACAGGCGTGTGGGGTTACATGAAGGGT
* * **
103662272 ACACAGCCTGACACATGGGCGTGTGGGGTTACATCGAAGGGT
1 ACACGGCCTGGCACACAGGCGTGTGGGGTTACAT-GAAGGGT
* *
103662314 GCACGGCCTGGCACACAGGTGTGTGG
1 ACACGGCCTGGCACACAGGCGTGTGG
103662340 CTTGGCTGTG
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
41 30 0.54
42 26 0.46
ACGTcount: A:0.21, C:0.23, G:0.38, T:0.18
Consensus pattern (41 bp):
ACACGGCCTGGCACACAGGCGTGTGGGGTTACATGAAGGGT
Found at i:103663427 original size:17 final size:16
Alignment explanation
Indices: 103663395--103663427 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
103663385 TACAATGGTA
103663395 TGTTTTTATTAGTTTT
1 TGTTTTTATTAGTTTT
103663411 TGTTTTATATTA-TTTT
1 TGTTTT-TATTAGTTTT
103663427 T
1 T
103663428 AATTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (16 bp):
TGTTTTTATTAGTTTT
Found at i:103665270 original size:15 final size:15
Alignment explanation
Indices: 103665240--103665268 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
103665230 ACTATTAGTA
103665240 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
103665255 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
103665269 TAACATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:103666495 original size:2 final size:2
Alignment explanation
Indices: 103666440--103666479 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
103666430 TATGAATGTA
*
103666440 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103666480 GTAGAAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:103671312 original size:41 final size:40
Alignment explanation
Indices: 103671266--103671345 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 40
103671256 TTGTAATATT
103671266 ATTA-TTTATACTAACTATTTAAAAGATATTTAAATATTTAG
1 ATTATTTTATACTAACTATTTAAAA-ATATTTAAA-ATTTAG
* * *
103671307 ATTATTTTATATTAATTATTTACAAATATTTAAAATTTA
1 ATTATTTTATACTAACTATTTAAAAATATTTAAAATTTA
103671346 TATTTCATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
40 5 0.14
41 13 0.37
42 17 0.49
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50
Consensus pattern (40 bp):
ATTATTTTATACTAACTATTTAAAAATATTTAAAATTTAG
Found at i:103673701 original size:609 final size:609
Alignment explanation
Indices: 103672543--103673761 Score: 2384
Period size: 609 Copynumber: 2.0 Consensus size: 609
103672533 CCTAAGACGG
103672543 ATCCTGTTATTATTATCTGAATTGTATGATAAATATTTGACATGTTCTTGATTATGTGTTCTTAA
1 ATCCTGTTATTATTATCTGAATTGTATGATAAATATTTGACATGTTCTTGATTATGTGTTCTTAA
103672608 TTTTTGTTTTGATATTCCAGGATATTGATTCAAGTTGAGCTCTTATTCAGAGAAGGAATAGACCC
66 TTTTTGTTTTGATATTCCAGGATATTGATTCAAGTTGAGCTCTTATTCAGAGAAGGAATAGACCC
*
103672673 TGTCTAAGAGTAAATTTGTCATAATTAGGAGGAGTTGATTGCATGCCTAGAGATAGGGTGATAAG
131 TGTCTAAGAGTAAATTTGCCATAATTAGGAGGAGTTGATTGCATGCCTAGAGATAGGGTGATAAG
103672738 ATTTTTCCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATACAATTCTAGGG
196 ATTTTTCCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATACAATTCTAGGG
103672803 TGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGCTAGACGTTATTAGTCTCGAGAGAGAT
261 TGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGCTAGACGTTATTAGTCTCGAGAGAGAT
103672868 AATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCAA
326 AATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCAA
103672933 ATAACAAGTGAAGTCTAGGTGGATTTTTCCTTAGGCATTGTCTTAATTAATCGAATTTTCCCAAA
391 ATAACAAGTGAAGTCTAGGTGGATTTTTCCTTAGGCATTGTCTTAATTAATCGAATTTTCCCAAA
103672998 AGTATTTTCCCAAATTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTTAGAAAACCAAACCTC
456 AGTATTTTCCCAAATTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTTAGAAAACCAAACCTC
103673063 TTAATTTTTAGGCTAGATAATAAAAGGAAGTAAATACTAGTACTCGTAGTTCCTTTGGGTTCGAC
521 TTAATTTTTAGGCTAGATAATAAAAGGAAGTAAATACTAGTACTCGTAGTTCCTTTGGGTTCGAC
*
103673128 AATTTGGTCTTGCTGAACTATACT
586 AATCTGGTCTTGCTGAACTATACT
103673152 ATCCTGTTATTATTATCTGAATTGTATGATAAATATTTGACATGTTCTTGATTATGTGTTCTTAA
1 ATCCTGTTATTATTATCTGAATTGTATGATAAATATTTGACATGTTCTTGATTATGTGTTCTTAA
103673217 TTTTTGTTTTGATATTCCAGGATATTGATTCAAGTTGAGCTCTTATTCAGAGAAGGAATAGACCC
66 TTTTTGTTTTGATATTCCAGGATATTGATTCAAGTTGAGCTCTTATTCAGAGAAGGAATAGACCC
* *
103673282 TGTCTAAGAGTAAATTTGCCATAATTAGGCGGAGTTGATTGCATGCTTAGAGATAGGGTGATAAG
131 TGTCTAAGAGTAAATTTGCCATAATTAGGAGGAGTTGATTGCATGCCTAGAGATAGGGTGATAAG
*
103673347 ATTTTTTCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATACAATTCTAGGG
196 ATTTTTCCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATACAATTCTAGGG
103673412 TGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGCTAGACGTTATTAGTCTCGAGAGAGAT
261 TGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGCTAGACGTTATTAGTCTCGAGAGAGAT
103673477 AATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCAA
326 AATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCAA
*
103673542 ATAACAAGTGAAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTAATCGAATTTTCCCAAA
391 ATAACAAGTGAAGTCTAGGTGGATTTTTCCTTAGGCATTGTCTTAATTAATCGAATTTTCCCAAA
103673607 AGTATTTTCCCAAATTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTTAGAAAACCAAACCTC
456 AGTATTTTCCCAAATTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTTAGAAAACCAAACCTC
103673672 TTAATTTTTAGGCTAGATAATAAAAGGAAGTAAATACTAGTACTCGTAGTTCCTTTGGGTTCGAC
521 TTAATTTTTAGGCTAGATAATAAAAGGAAGTAAATACTAGTACTCGTAGTTCCTTTGGGTTCGAC
103673737 AATCTGGTCTTGCTGAACTATACT
586 AATCTGGTCTTGCTGAACTATACT
103673761 A
1 A
103673762 CTGTTCGATA
Statistics
Matches: 604, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
609 604 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (609 bp):
ATCCTGTTATTATTATCTGAATTGTATGATAAATATTTGACATGTTCTTGATTATGTGTTCTTAA
TTTTTGTTTTGATATTCCAGGATATTGATTCAAGTTGAGCTCTTATTCAGAGAAGGAATAGACCC
TGTCTAAGAGTAAATTTGCCATAATTAGGAGGAGTTGATTGCATGCCTAGAGATAGGGTGATAAG
ATTTTTCCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATACAATTCTAGGG
TGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGCTAGACGTTATTAGTCTCGAGAGAGAT
AATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCAA
ATAACAAGTGAAGTCTAGGTGGATTTTTCCTTAGGCATTGTCTTAATTAATCGAATTTTCCCAAA
AGTATTTTCCCAAATTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTTAGAAAACCAAACCTC
TTAATTTTTAGGCTAGATAATAAAAGGAAGTAAATACTAGTACTCGTAGTTCCTTTGGGTTCGAC
AATCTGGTCTTGCTGAACTATACT
Found at i:103679268 original size:14 final size:15
Alignment explanation
Indices: 103679245--103679277 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
103679235 TTTTATTAGG
*
103679245 TTTTATAATTTTT-A
1 TTTTACAATTTTTAA
103679259 TTTTACAATTTTTAA
1 TTTTACAATTTTTAA
103679274 TTTT
1 TTTT
103679278 GGCTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTACAATTTTTAA
Found at i:103684399 original size:26 final size:26
Alignment explanation
Indices: 103684370--103684430 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
103684360 CATTTAGAAA
*
103684370 GCTTTGAGCAGGTGA-TATTTTAACAG
1 GCTTTGAGCAGATGATTA-TTTAACAG
** *
103684396 GCTTTGAGTTGATGATTATTTAGCAG
1 GCTTTGAGCAGATGATTATTTAACAG
103684422 GCTTTGAGC
1 GCTTTGAGC
103684431 TCGTATTTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.38
Consensus pattern (26 bp):
GCTTTGAGCAGATGATTATTTAACAG
Found at i:103685825 original size:40 final size:40
Alignment explanation
Indices: 103685754--103685846 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
103685744 ACGTAGAACT
* *** *
103685754 CTTTACCTCGTGTCAGCAAAAGCGTGTTGACGTGGGCACA
1 CTTTACCCCGTGTCAGCAAAAGCGCACTGACGTGGCCACA
* * *
103685794 CTTTACCCCTTGTCAGCAAAAGTGCACTGACGTGGCCACG
1 CTTTACCCCGTGTCAGCAAAAGCGCACTGACGTGGCCACA
*
103685834 CTTTACCTCGTGT
1 CTTTACCCCGTGT
103685847 TTGATTAGGG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTTACCCCGTGTCAGCAAAAGCGCACTGACGTGGCCACA
Found at i:103688251 original size:20 final size:20
Alignment explanation
Indices: 103688205--103688244 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
103688195 ATTTTTGGAT
103688205 AACTCGAATTGTGTAATTTA
1 AACTCGAATTGTGTAATTTA
103688225 AACTCGAATTGTGTAATTTA
1 AACTCGAATTGTGTAATTTA
103688245 GATTCGAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (20 bp):
AACTCGAATTGTGTAATTTA
Found at i:103690577 original size:40 final size:40
Alignment explanation
Indices: 103690466--103690577 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
103690456 AGAAAAACAT
* * * * *
103690466 GGGGTAAAATGCACCCTCGTTAGCGCGCTTTTGCTGACAC
1 GGGGTAAAGTGCGCCCACGTCAGCTCGCTTTTGCTGACAC
* * * *
103690506 GGGGTAATGTTCGCCCACGTCAGCTCACTTTTGTTGACAC
1 GGGGTAAAGTGCGCCCACGTCAGCTCGCTTTTGCTGACAC
*
103690546 GGGGTAAAGTGCTCCCACGTCAGCAT-GCTTTT
1 GGGGTAAAGTGCGCCCACGTCAGC-TCGCTTTT
103690578 CTGTGATTTC
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
40 57 0.98
41 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.28
Consensus pattern (40 bp):
GGGGTAAAGTGCGCCCACGTCAGCTCGCTTTTGCTGACAC
Found at i:103691003 original size:21 final size:22
Alignment explanation
Indices: 103690959--103691009 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
103690949 TCTAGGGCTT
*
103690959 ACACGCCCGTGTGGTCCATGGG
1 ACACGCCCGTGTGGACCATGGG
* *
103690981 ACACGCCTGTGT-GACCCTGGG
1 ACACGCCCGTGTGGACCATGGG
*
103691002 ACATGCCC
1 ACACGCCC
103691010 ATGTTAGAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCATGGG
Found at i:103696321 original size:28 final size:28
Alignment explanation
Indices: 103696281--103696337 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
103696271 GAACTGAAAG
*
103696281 TTGGTACGCTAGGTATATGAGTTCTACA
1 TTGGTACACTAGGTATATGAGTTCTACA
103696309 TTGGTACACTAGGTATATGAGTTCTACA
1 TTGGTACACTAGGTATATGAGTTCTACA
103696337 T
1 T
103696338 GATGTAGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (28 bp):
TTGGTACACTAGGTATATGAGTTCTACA
Found at i:103696981 original size:21 final size:21
Alignment explanation
Indices: 103696936--103696982 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
103696926 ATAGGACTTA
**
103696936 TAAATTA--ATTTAATTTCTT
1 TAAATTATTATTTAATTGATT
103696955 TAAATTATTATTTAATTGATT
1 TAAATTATTATTTAATTGATT
*
103696976 TTAATTA
1 TAAATTA
103696983 AGTAATTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
21 16 0.70
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TAAATTATTATTTAATTGATT
Found at i:103705997 original size:42 final size:43
Alignment explanation
Indices: 103705897--103706032 Score: 127
Period size: 42 Copynumber: 3.2 Consensus size: 43
103705887 TGTGATTTTG
** * *
103705897 TGTAAGACCACATCT-GGAACATTGGCATCGACT-TTTGTTTTACA
1 TGTAAGACCATGTCTAGG-ACAGTGGCATCGA-TATTTG-ATTACA
* *
103705941 TGTAAGACCATGTCTAGGACA-TCGGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTAGGACAGT-GGCATCGATATTTGATTACA
* * *
103705983 TGTAAGACCCTGTCTGGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATTACA
103706026 TGTAAGA
1 TGTAAGA
103706033 TCACGTCTGG
Statistics
Matches: 77, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 30 0.39
43 22 0.29
44 23 0.30
45 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGATTACA
Found at i:103706041 original size:43 final size:42
Alignment explanation
Indices: 103705897--103706053 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
103705887 TGTGATTTTG
* * * *
103705897 TGTAAGACCACATCTGGAACATTGGCATCGACTTTTGTTTTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGA-TTTTG-ATTACA
* * * *
103705941 TGTAAGACCATGTCTAGGACA-TCGGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGAT-TTTGATTACA
103705983 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGAT-TTTGATTACA
*
103706026 TGTAAGATCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
103706054 TGTATATGTT
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 30 0.32
43 38 0.41
44 25 0.27
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATTTTGATTACA
Found at i:103710601 original size:27 final size:27
Alignment explanation
Indices: 103710539--103710668 Score: 154
Period size: 27 Copynumber: 4.8 Consensus size: 27
103710529 ATGTCTCAAT
* *
103710539 TTGCCACAAAGGCTTTC-CTTTCCTTAGA
1 TTGCCACAAAGGC-TTCAATTT-CATAGA
*
103710567 TCGCCACAAAGGCTTCAATTTCATAGA
1 TTGCCACAAAGGCTTCAATTTCATAGA
103710594 TTGCCACAAAGGCTTCAATTTCATAGA
1 TTGCCACAAAGGCTTCAATTTCATAGA
* * *
103710621 TTACCACAAAGGCTTCCATTTCATATA
1 TTGCCACAAAGGCTTCAATTTCATAGA
* * *
103710648 TTTCCACAAATGCTTCTATTT
1 TTGCCACAAAGGCTTCAATTT
103710669 TCTCGTGAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
27 76 0.84
28 15 0.16
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (27 bp):
TTGCCACAAAGGCTTCAATTTCATAGA
Found at i:103715421 original size:53 final size:52
Alignment explanation
Indices: 103715268--103715426 Score: 167
Period size: 52 Copynumber: 3.0 Consensus size: 52
103715258 GACGGAAAAG
* ** * **
103715268 ATGTGATATGTGCGCCCGTATAAGACCATAGCTGGGCTATGGTATCGGTACA
1 ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATT
* * *
103715320 ATGTGATACGTGTTCCCGTGTAAGACCATAGCTGGGCTATGGCGTCGGTGTT
1 ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATT
* * * * *
103715372 ATGTGGTAATGTGATT-CCGTATAAGACCATATCTGGGATATAGCATCGGTATT
1 ATGTGAT-ACGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATT
103715425 AT
1 AT
103715427 ATGTGATCCA
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
52 49 0.56
53 37 0.42
54 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (52 bp):
ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATT
Found at i:103722246 original size:30 final size:30
Alignment explanation
Indices: 103722212--103722270 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
103722202 GTAAGCAGGC
**
103722212 CGTGTGCCTCACATGGCTATTGGACACGCT
1 CGTGTGCCTCACATGGCTACCGGACACGCT
103722242 CGTGTGCCTCACATGGCTACCGGACACGC
1 CGTGTGCCTCACATGGCTACCGGACACGC
103722271 CTGTGTCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.17, C:0.34, G:0.27, T:0.22
Consensus pattern (30 bp):
CGTGTGCCTCACATGGCTACCGGACACGCT
Found at i:103730112 original size:42 final size:44
Alignment explanation
Indices: 103730048--103730162 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 44
103730038 AGCTTGTACA
* * * *
103730048 ATGCCAACGTCCTAGACGTGGTCTTAC-CCAAAATCATATA-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACCAAAATCACAAATCG
* * **
103730090 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACCAAAATCACAAATCG
*
103730134 ATGCCAACGTCCCAGACATGGTCGTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
103730163 GATAACACAT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 23 0.38
43 9 0.15
44 28 0.47
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.22
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACCAAAATCACAAATCG
Found at i:103733905 original size:2 final size:2
Alignment explanation
Indices: 103733894--103733940 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
103733884 ACTTTAATAC
*
103733894 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103733935 AT AT AT
1 AT AT AT
103733941 CCCTTTCAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:103749397 original size:43 final size:42
Alignment explanation
Indices: 103749349--103749463 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
103749339 GGTGTGGTTT
*
103749349 CGTGTAAGACCATATCTGGGACATTGGCATCAATATGAGATTA
1 CGTGTAAGACCATATCTGGGACA-TGGCATCAATATGAGATAA
* * * * *
103749392 CGTGTAAGACCCTATTTGGGACAGAGGCATCGATATGTGATAA
1 CGTGTAAGACCATATCTGGGACA-TGGCATCAATATGAGATAA
* *
103749435 CATGTAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGACATGGCAT
103749464 TGTATGTGAT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 5 0.08
43 55 0.92
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGACATGGCATCAATATGAGATAA
Found at i:103753278 original size:25 final size:26
Alignment explanation
Indices: 103753215--103753285 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
103753205 AAAACCAAAC
*
103753215 AAAGCC-TATGTGACAAATTATCTAG
1 AAAGCCTTATGTGGCAAATTATCTAG
* *
103753240 AAAGCCTT-TATGGCAAGTTATCT-G
1 AAAGCCTTATGTGGCAAATTATCTAG
* *
103753264 AAAGGCTTATGTGGCATATTAT
1 AAAGCCTTATGTGGCAAATTAT
103753286 TTGGAAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
24 8 0.22
25 28 0.76
26 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (26 bp):
AAAGCCTTATGTGGCAAATTATCTAG
Found at i:103753381 original size:25 final size:25
Alignment explanation
Indices: 103753215--103753381 Score: 65
Period size: 25 Copynumber: 6.7 Consensus size: 25
103753205 AAAACCAAAC
* * * *
103753215 AAAGCCTATGTGACAAATTATCTAG
1 AAAGCCTTTATGACAAGTTATCTGG
*
103753240 AAAGCCTTTATGGCAAGTTATCT-G
1 AAAGCCTTTATGACAAGTTATCTGG
* * * *
103753264 AAAGGCTTATGTGGCATA-TTATTTGG
1 AAAGCCTT-TATGACA-AGTTATCTGG
**** ** *
103753290 AAAAAAATTATGATGAGTTATCTGA
1 AAAGCCTTTATGACAAGTTATCTGG
* * *
103753315 AAAGCCTATGTGAC-A-TTATTTGG
1 AAAGCCTTTATGACAAGTTATCTGG
* **
103753338 GAAGCC-TTAGTGGTGAAGTTATCTGG
1 AAAGCCTTTA-T-GACAAGTTATCTGG
103753364 AAAGCCTTTATGACAAGT
1 AAAGCCTTTATGACAAGT
103753382 CATATGAAAA
Statistics
Matches: 98, Mismatches: 35, Indels: 18
0.65 0.23 0.12
Matches are distributed among these distances:
22 1 0.01
23 12 0.12
24 11 0.11
25 52 0.53
26 19 0.19
27 3 0.03
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (25 bp):
AAAGCCTTTATGACAAGTTATCTGG
Found at i:103757273 original size:15 final size:12
Alignment explanation
Indices: 103757219--103757261 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
103757209 AGTTATATTA
103757219 TAAATATAA-TT
1 TAAATATAATTT
*
103757230 TAATATATAGTATT
1 TAA-ATATAAT-TT
103757244 TAAATATAATTT
1 TAAATATAATTT
103757256 TAAATA
1 TAAATA
103757262 ATAAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 3 0.11
12 13 0.48
13 6 0.22
14 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (12 bp):
TAAATATAATTT
Found at i:103759244 original size:9 final size:9
Alignment explanation
Indices: 103759217--103759256 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
103759207 TGTCTTCTCG
103759217 CATAGGAAC
1 CATAGGAAC
**
103759226 CATACCAAC
1 CATAGGAAC
103759235 CATAGGAAC
1 CATAGGAAC
103759244 CATAGGAAC
1 CATAGGAAC
103759253 CATA
1 CATA
103759257 TAAATAACCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.45, C:0.28, G:0.15, T:0.12
Consensus pattern (9 bp):
CATAGGAAC
Found at i:103760771 original size:18 final size:18
Alignment explanation
Indices: 103760748--103760790 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
103760738 TATTTTAATT
103760748 AATTATATAATTAGTTTA
1 AATTATATAATTAGTTTA
* *
103760766 AATTAT-TTATTATTTTA
1 AATTATATAATTAGTTTA
*
103760783 AATGATAT
1 AATTATAT
103760791 TTTTACTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (18 bp):
AATTATATAATTAGTTTA
Found at i:103760775 original size:22 final size:21
Alignment explanation
Indices: 103760726--103760775 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
103760716 TGTATCATAA
* *
103760726 TATTTTTATAAATATTTTAAT
1 TATTTATATAAATATTTAAAT
* *
103760747 TAATTATATAATTAGTTTAAAT
1 TATTTATATAAATA-TTTAAAT
103760769 TATTTAT
1 TATTTAT
103760776 TATTTTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTTATATAAATATTTAAAT
Found at i:103762342 original size:16 final size:16
Alignment explanation
Indices: 103762323--103762356 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
103762313 AAGATTACCA
103762323 TAATTCATGTAAAAGG
1 TAATTCATGTAAAAGG
103762339 TAATTCATGTAAAAGG
1 TAATTCATGTAAAAGG
103762355 TA
1 TA
103762357 TCATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (16 bp):
TAATTCATGTAAAAGG
Found at i:103763390 original size:34 final size:34
Alignment explanation
Indices: 103763341--103763419 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 34
103763331 ATAAGTGTAA
* *
103763341 ATTATTAATTTTAATGAACTTGATGCATTAAAAT
1 ATTAATAAATTTAATGAACTTGATGCATTAAAAT
103763375 ATTAATAAATTTAATGAACTTGATGCATTAAAAT
1 ATTAATAAATTTAATGAACTTGATGCATTAAAAT
103763409 ATTAATAAATT
1 ATTAATAAATT
103763420 AACACTAACC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.42
Consensus pattern (34 bp):
ATTAATAAATTTAATGAACTTGATGCATTAAAAT
Found at i:103764383 original size:30 final size:30
Alignment explanation
Indices: 103764349--103764415 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
103764339 TGAGAAACCC
* *
103764349 TTATTTGAAC-ATTTATAAAAAT-TTTGATTT
1 TTATTTGAACTATTT-T-AAAATGTTTAACTT
103764379 TTATTTG-ACTATTTTAAAATGTTTAACTT
1 TTATTTGAACTATTTTAAAATGTTTAACTT
103764408 TTATTTGA
1 TTATTTGA
103764416 GCACGTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 5 0.16
29 16 0.50
30 11 0.34
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.55
Consensus pattern (30 bp):
TTATTTGAACTATTTTAAAATGTTTAACTT
Found at i:103765455 original size:11 final size:11
Alignment explanation
Indices: 103765441--103765486 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
103765431 CTCCTCTCAC
103765441 AATTCTCTCTA
1 AATTCTCTCTA
*
103765452 AATTCTTTCTA
1 AATTCTCTCTA
103765463 AATTCTCTC-A
1 AATTCTCTCTA
*
103765473 AATT-TCTCTC
1 AATTCTCTCTA
103765483 AATT
1 AATT
103765487 TTTGTCAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 4 0.13
10 9 0.29
11 18 0.58
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (11 bp):
AATTCTCTCTA
Found at i:103766736 original size:2 final size:2
Alignment explanation
Indices: 103766724--103766760 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
103766714 TTACTTCAAA
103766724 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103766761 TTGACTTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:103767125 original size:149 final size:150
Alignment explanation
Indices: 103766848--103767147 Score: 593
Period size: 149 Copynumber: 2.0 Consensus size: 150
103766838 ACCACATAAT
103766848 CACAAATTCACTACAAGTTGTCTTCCTGAGCAACAATCACTAAATTATTTATAAATGGAGCTACG
1 CACAAATTCACTACAAGTTGTCTTCCTGAGCAACAATCACTAAATTATTTATAAATGGAGCTACG
103766913 AAACTCCAAATCAATTGCCGTTAATTTTTCCTGAAAATAGACTCATATATCTTCTATCCATAAAA
66 AAACTCCAAATCAATTGCCGTTAATTTTTCCTGAAAATAGACTCATATATCTTCTATCCATAAAA
103766978 TTTTCAGAATTTTTGTTTGG
131 TTTTCAGAATTTTTGTTTGG
103766998 CACAAA-TCACTACAAGTTGTCTTCCTGAGCAACAATCACTAAATTATTTATAAATGGAGCTACG
1 CACAAATTCACTACAAGTTGTCTTCCTGAGCAACAATCACTAAATTATTTATAAATGGAGCTACG
103767062 AAACTCCAAATCAATTGCCGTTAATTTTTCCTGAAAATAGACTCATATATCTTCTATCCATAAAA
66 AAACTCCAAATCAATTGCCGTTAATTTTTCCTGAAAATAGACTCATATATCTTCTATCCATAAAA
103767127 TTTTCAGAATTTTTGTTTGG
131 TTTTCAGAATTTTTGTTTGG
103767147 C
1 C
103767148 CAATCAATAC
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
149 144 0.96
150 6 0.04
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (150 bp):
CACAAATTCACTACAAGTTGTCTTCCTGAGCAACAATCACTAAATTATTTATAAATGGAGCTACG
AAACTCCAAATCAATTGCCGTTAATTTTTCCTGAAAATAGACTCATATATCTTCTATCCATAAAA
TTTTCAGAATTTTTGTTTGG
Found at i:103776624 original size:7 final size:7
Alignment explanation
Indices: 103776612--103776637 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
103776602 TAGTCGTTTC
103776612 GTATTTA
1 GTATTTA
103776619 GTATTTA
1 GTATTTA
103776626 GTATTTA
1 GTATTTA
103776633 GTATT
1 GTATT
103776638 ACCTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:103777155 original size:30 final size:30
Alignment explanation
Indices: 103777119--103777186 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
103777109 GATAATGACG
* * * *
103777119 CAGGCCCATTAGCAGCGCCCACACAATCAC
1 CAGGCCCATCAACAGCACCCACACAACCAC
103777149 CAGGCCCATCAACAGCACCCACACAACCAC
1 CAGGCCCATCAACAGCACCCACACAACCAC
*
103777179 CTGGCCCA
1 CAGGCCCA
103777187 ACATTTCAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.31, C:0.47, G:0.15, T:0.07
Consensus pattern (30 bp):
CAGGCCCATCAACAGCACCCACACAACCAC
Found at i:103777921 original size:125 final size:127
Alignment explanation
Indices: 103777671--103778041 Score: 572
Period size: 129 Copynumber: 2.9 Consensus size: 127
103777661 TTGTAAAAAC
* *
103777671 ATTTTTTATATAG-TTTCATATAATAAAATAAAAGTTATTTTTAATATTTTAAGTGTACTTTA-T
1 ATTTTTTATATAGTTTTAAT-TAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACTTTACT
*
103777734 TTTTTAATTTTATTAAAATAAATGTACTTTTAAATTAGCCAATATTTTTATTA-TTTT-TA-T
65 TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATT
* *
103777794 ATTTTTTATATAGTTTTAATTAATAAAATAAAATTTGTTTTTAATATTTTAATTGTACTTTACTT
1 ATTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACTTTACTT
103777859 TTTCTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTT
66 TTT-TAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATA-TT
*
103777923 ATTTTTTATATAGTTTTAATTAATAAAAGAAAAGTTATTTTTAATATTTTAATTGTACTTTACAT
1 ATTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACTTTAC-T
* * * *
103777988 TTTTTAATTTTAATACATTAAATATTCTTTTAAATTAGCCAATAATTTTTATTA
65 TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAAT-ATTTTTATTA
103778042 AAATAAATGT
Statistics
Matches: 227, Mismatches: 12, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
123 52 0.23
124 10 0.04
125 48 0.21
126 4 0.02
127 2 0.01
129 96 0.42
130 15 0.07
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (127 bp):
ATTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACTTTACTT
TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATT
Found at i:103781013 original size:46 final size:46
Alignment explanation
Indices: 103780861--103781027 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
103780851 AACTCGTTGA
* * * *
103780861 GTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTC
* * * *
103780907 GTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CCGAGCTC
103780954 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTC
*
103781000 GTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
103781028 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 55 0.55
47 27 0.27
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (46 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTC
Found at i:103789697 original size:46 final size:46
Alignment explanation
Indices: 103789643--103790465 Score: 1221
Period size: 46 Copynumber: 18.0 Consensus size: 46
103789633 GCGCTCTGAA
103789643 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103789689 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103789735 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
103789781 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGCCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103789826 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
103789872 ATGAAATGTGTAAGATTATGGTTGAAAGATACCACGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* **
103789918 AT-AAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103789963 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103790009 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGCCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
103790055 -TAGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACGTGAC
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
103790101 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGAAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103790146 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103790192 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
103790238 ATGAAATGTGCAAGATCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103790284 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATC-TGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CATGAT
*
103790330 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * *
103790376 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
103790422 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
103790466 TCAAAGATAA
Statistics
Matches: 706, Mismatches: 61, Indels: 20
0.90 0.08 0.03
Matches are distributed among these distances:
45 120 0.17
46 583 0.83
47 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:103789899 original size:137 final size:138
Alignment explanation
Indices: 103789643--103790465 Score: 1212
Period size: 137 Copynumber: 6.0 Consensus size: 138
103789633 GCGCTCTGAA
*
103789643 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT-TAGAAATGTGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT-GAAATGTGCAAGACCA
103789707 TGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
103789772 CAACATGAC
130 CAACATGAC
** * * *
103789781 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGCCAACCTGATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCAT
** *
103789845 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGATTATGGTTGAAAGATACCACGGC
66 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
*
103789910 AACGTGAC
131 AACATGAC
* **
103789918 AT-AAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCAT
*
103789982 GGTTGAAAGATACCATGGCAACATGAT-TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGC
66 GGTTGAAAGATACCATGGCAACATGATAT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGG
103790046 CAACATGA-
130 CAACATGAC
* * * * ***
103790054 TTAGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACGTGACATGAAA-GAATAAGACCA
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCA
* *
103790118 TGGTTGAAAGATACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
*
103790183 CAACATGAT
130 CAACATGAC
*
103790192 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGATCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCAT
*
103790257 GGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
*
103790322 AATC-TGAT
131 AA-CATGAC
* **
103790330 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCAT
* * * * * *
103790395 GGTTGAAAGATACCATGGAAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGG
66 GGTTGAAAGATACCATGGCAACATGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGG
*
103790459 CATCATG
130 CAACATG
103790466 TCAAAGATAA
Statistics
Matches: 624, Mismatches: 50, Indels: 22
0.90 0.07 0.03
Matches are distributed among these distances:
136 5 0.01
137 368 0.59
138 250 0.40
139 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (138 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCAT
GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
AACATGAC
Found at i:103789980 original size:183 final size:184
Alignment explanation
Indices: 103789643--103790460 Score: 1220
Period size: 183 Copynumber: 4.5 Consensus size: 184
103789633 GCGCTCTGAA
103789643 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCAT
* * * **
103789708 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGC
* ** * *
103789773 AACATGACATGAAA-GAATAAGACCATGGTTGAAAGATACCATGCCAACCTGAT
131 AACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**
103789826 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TATGAAATGTGTAAGATTA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTA-GAAATGTGTAAGACCA
*
103789890 TGGTTGAAAGATACCACGGCAACGTGACAT-AAAAGAATAAGACCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGG
*
103789954 CAACATGATATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGAT
130 CAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103790009 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGCCAACATGATTAGAAATGTGTAAGACCA
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCA
*
103790073 TAGTTGAAAGATACCATGGCAACGTGACATG-AAAGAATAAGACCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGG
* *
103790137 AAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
130 CAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
103790192 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-TATGAAATGTGCAAGATCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTA-GAAATGTGTAAGACCA
* * * **
103790256 TGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
65 TGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGG
*
103790321 CAATC-TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
130 CAA-CATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * *
103790376 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGAAACATGA-CAGAAAATGAGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTAG-AAATGTGTAAGACCA
* * *
103790440 TAGTTGAAAGACACTATGGCA
65 TGGTTGAAAGATACCATGGCA
103790461 TCATGTCAAA
Statistics
Matches: 581, Mismatches: 44, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
182 50 0.09
183 374 0.64
184 156 0.27
185 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (184 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCAT
GGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGC
AACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:103793372 original size:23 final size:22
Alignment explanation
Indices: 103793345--103793431 Score: 74
Period size: 19 Copynumber: 4.0 Consensus size: 22
103793335 TGATGTTGAT
103793345 GATATTTTATGATTATTTAATTA
1 GATATTTTAT-ATTATTTAATTA
*
103793368 GATA---TATATTATTTAATGA
1 GATATTTTATATTATTTAATTA
*
103793387 GATATTTTATTATTATTTCATTA
1 GATATTTTA-TATTATTTAATTA
* * * *
103793410 -TTATTTTTTATTAATTATTTA
1 GATATTTTATATTATTTAATTA
103793431 G
1 G
103793432 TATAAAAGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
19 15 0.29
20 3 0.06
21 10 0.20
22 8 0.16
23 15 0.29
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.59
Consensus pattern (22 bp):
GATATTTTATATTATTTAATTA
Found at i:103795616 original size:46 final size:46
Alignment explanation
Indices: 103795547--103796368 Score: 1201
Period size: 46 Copynumber: 18.0 Consensus size: 46
103795537 GCTCTCTGAA
*
103795547 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103795593 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103795639 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
103795685 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
103795731 ATGAAA-GAATAAGACCATGGTTGAAAGATAGCATGGTAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103795776 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103795822 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**
103795868 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103795913 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
103795959 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
103796005 ATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
103796051 ATGAAA-GAATAAGACCATGGTTGAAAGATACCTTGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103796096 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATTAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
103796142 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
103796188 ATGAAA-GAATAAGACCATGGTTGAAAAATACCATGGCAACTTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
103796233 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
***
103796279 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * * *
103796324 CGGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
103796369 TTAAAGATAA
Statistics
Matches: 703, Mismatches: 64, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
45 162 0.23
46 539 0.77
47 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:103795794 original size:137 final size:138
Alignment explanation
Indices: 103795547--103796368 Score: 1185
Period size: 137 Copynumber: 6.0 Consensus size: 138
103795537 GCTCTCTGAA
* **
103795547 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT-TAGAAATGTGTAAGACCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT-GAAATGAATAAGACCA
*
103795611 TGGTTGAAAGATACCATGGCAACATGAT-TAGAAATGTGTAAGACCATGGTTGAAAGATACCATG
65 TGGTTGAAAGATACCATGGCAACATGATAT-GAAATATGTAAGACCATGGTTGAAAGATACCATG
103795675 GCAACATGAT
129 GCAACATGAT
** *
103795685 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAA-GAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCAT
* * *
103795749 GGTTGAAAGATAGCATGGTAACCTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGC
103795814 AACATGAT
131 AACATGAT
*
103795822 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA-GAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCAT
* *
103795886 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGC
103795951 AACATGAT
131 AACATGAT
**
103795959 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCA
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCA
* * * * * *
103796023 TGGTTAAAAGATACCATGGCAACGTGACATGAAAGA-ATAAGACCATGGTTGAAAGATACCTTGG
65 TGGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGG
*
103796087 CAACCTGAT
130 CAACATGAT
* **
103796096 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATTATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCAT
* * * * *
103796161 GGTTGAAAGATACCATGGCAACGTGACATGAAAGA-ATAAGACCATGGTTGAAAAATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGC
*
103796225 AACTTGAT
131 AACATGAT
* *
103796233 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCAT
** * * *
103796298 GGTTGAAAGATACCATGGCAACATGA-CGGAAA-ATGAGTAAGACCATAGTTGAAAGACACTATG
66 GGTTGAAAGATACCATGGCAACATGATATGAAATAT--GTAAGACCATGGTTGAAAGATACCATG
*
103796361 GCATCATG
129 GCAACATG
103796369 TTAAAGATAA
Statistics
Matches: 627, Mismatches: 49, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
135 1 0.00
136 5 0.01
137 504 0.80
138 116 0.19
139 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (138 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGC
AACATGAT
Found at i:103795865 original size:183 final size:182
Alignment explanation
Indices: 103795557--103796368 Score: 1198
Period size: 183 Copynumber: 4.4 Consensus size: 182
103795547 ATGAAATATG
103795557 TAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATT-GAAATGTGTAAGACCATGGTTGAAAGA
*
103795622 TACCATGGCAACATGAT-TAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
65 TACCATGGCAACATGATAT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA
** * *
103795686 TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAA-GAA
129 TGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
* * * *
103795740 TAAGACCATGGTTGAAAGATAGCATGGTAACCTGATATGAAATATGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAT-TGAAATGTGTAAGACCATGGTTGAAAGA
103795805 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* **
103795870 GAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTG
130 GAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
*
103795923 CAAGACCATGGTTGAAAGATACCATGGCAACATGATTAGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATT-GAAATGTGTAAGACCATGGTTGAAAGA
* *
103795988 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAACGTGACAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * **
103796053 GAAAGAATAAGACCATGGTTGAAAGATACCTTGGCAACCTGATATGAAATGTG
130 GAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
*
103796106 TAAGACCATGGTTGAAAGATACCATGGCAACATTATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGAT-TGAAATGTGTAAGACCATGGTTGAAAGA
* * ** * * *
103796171 TACCATGGCAACGTGACATGAAA-GAATAAGACCATGGTTGAAAAATACCATGGCAACTTGATAT
65 TACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
**
103796235 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
130 GAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
* ** * *
103796289 CAAGACCATGGTTGAAAGATACCATGGCAACATGACGGAAAATGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATTG-AAATGTGTAAGACCATGGTTGAAAGA
* * *
103796354 CACTATGGCATCATG
65 TACCATGGCAACATG
103796369 TTAAAGATAA
Statistics
Matches: 575, Mismatches: 47, Indels: 14
0.90 0.07 0.02
Matches are distributed among these distances:
182 81 0.14
183 491 0.85
184 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (182 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATTGAAATGTGTAAGACCATGGTTGAAAGAT
ACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
AAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
Found at i:103808594 original size:31 final size:32
Alignment explanation
Indices: 103808553--103808615 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
103808543 TTATTTATAA
*
103808553 AAGATATTTAT-TAATTAAATA-ATTATATTAT
1 AAGATATTTATGTAA-TAAATATATTAAATTAT
*
103808584 AAGATTTTTATGTAATAAATATATTAAATTAT
1 AAGATATTTATGTAATAAATATATTAAATTAT
103808616 GACAAGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (32 bp):
AAGATATTTATGTAATAAATATATTAAATTAT
Found at i:103808754 original size:21 final size:21
Alignment explanation
Indices: 103808711--103808760 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
103808701 ATATATATAT
*
103808711 AAAGTAAAACAAAAGAAAAAGA
1 AAAG-AAAAAAAAAGAAAAAGA
* * *
103808733 AATGAAAAAAAAAGAGAGAGA
1 AAAGAAAAAAAAAGAAAAAGA
103808754 AAAGAAA
1 AAAGAAA
103808761 CAGAATGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.76, C:0.02, G:0.18, T:0.04
Consensus pattern (21 bp):
AAAGAAAAAAAAAGAAAAAGA
Found at i:103810116 original size:30 final size:30
Alignment explanation
Indices: 103810080--103810142 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
103810070 CCTTTTCATA
103810080 TTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
** *
103810110 TTTCATATTTCATATTATTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
103810140 TTT
1 TTT
103810143 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:103810385 original size:24 final size:24
Alignment explanation
Indices: 103810349--103810476 Score: 215
Period size: 24 Copynumber: 5.4 Consensus size: 24
103810339 CTGGAGGCCT
*
103810349 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
103810374 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
103810398 AGCCC-TTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
103810420 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
103810444 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
103810468 AGCCCTTTT
1 AGCCCTTTT
103810477 TCACTTCCTC
Statistics
Matches: 99, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
22 19 0.19
23 6 0.06
24 70 0.71
25 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:103810427 original size:46 final size:48
Alignment explanation
Indices: 103810349--103810476 Score: 215
Period size: 46 Copynumber: 2.7 Consensus size: 48
103810339 CTGGAGGCCT
*
103810349 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
103810398 AGCCC-TTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
103810444 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
103810477 TCACTTCCTC
Statistics
Matches: 75, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
46 41 0.55
47 6 0.08
48 24 0.32
49 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:103810550 original size:20 final size:20
Alignment explanation
Indices: 103810525--103810591 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
103810515 TTATGATTAC
103810525 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
103810545 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
103810565 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
103810585 ACCATGT
1 ATCATGT
103810592 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:103810556 original size:11 final size:11
Alignment explanation
Indices: 103810525--103810580 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
103810515 TTATGATTAC
103810525 ATCATGTGCAT
1 ATCATGTGCAT
*
103810536 ATCA--TACAT
1 ATCATGTGCAT
103810545 ATCATGTGCAT
1 ATCATGTGCAT
*
103810556 ATCA--TACAT
1 ATCATGTGCAT
*
103810565 GTCATGTGCAT
1 ATCATGTGCAT
103810576 ATCAT
1 ATCAT
103810581 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:103810660 original size:25 final size:25
Alignment explanation
Indices: 103810628--103810675 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
103810618 ATACATAAAC
* * *
103810628 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
103810653 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
103810676 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:103818466 original size:24 final size:24
Alignment explanation
Indices: 103818430--103818581 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
103818420 CTGGAGGCCT
*
103818430 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
103818455 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
103818479 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
103818502 GGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
103818526 AGCCCTTTTGATAACTTGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
103818550 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
103818573 AGCCCTTTT
1 AGCCCTTTT
103818582 TCACTTCCTC
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.36
24 71 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:103818516 original size:71 final size:71
Alignment explanation
Indices: 103818430--103818581 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 71
103818420 CTGGAGGCCT
*
103818430 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTA
103818495 GGGCATA
65 GGGCATA
* * * * *
103818502 GGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTTGGGCATAAGCCCTTTAATAACTAG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTAG
103818567 GGCATA
66 GGCATA
103818573 AGCCCTTTT
1 AGCCCTTTT
103818582 TCACTTCCTC
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 70 0.96
72 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTAG
GGCATA
Found at i:103818581 original size:47 final size:48
Alignment explanation
Indices: 103818430--103818581 Score: 227
Period size: 47 Copynumber: 3.2 Consensus size: 48
103818420 CTGGAGGCCT
*
103818430 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
103818479 AGCCC-TTTAATAACTGGGGCATAGGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* * *
103818526 AGCCCTTTTGATAACTTGGGCATAAGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
103818573 AGCCCTTTT
1 AGCCCTTTT
103818582 TCACTTCCTC
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
47 69 0.73
48 21 0.22
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:103818655 original size:20 final size:20
Alignment explanation
Indices: 103818630--103818676 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
103818620 TTATGATTAC
103818630 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
103818650 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
103818670 ACCATGT
1 ATCATGT
103818677 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:103818745 original size:25 final size:25
Alignment explanation
Indices: 103818713--103818760 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
103818703 ATACATAAAC
* * *
103818713 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
103818738 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
103818761 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:103821315 original size:16 final size:16
Alignment explanation
Indices: 103821294--103821327 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
103821284 ATATATAGTT
103821294 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
103821310 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
103821326 AA
1 AA
103821328 AAATGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:103821719 original size:18 final size:18
Alignment explanation
Indices: 103821698--103821888 Score: 156
Period size: 18 Copynumber: 10.6 Consensus size: 18
103821688 TAACTGATTA
*
103821698 TTACTGAATAATTAACTG
1 TTACTGAATAATTGACTG
*
103821716 TTACTGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
103821734 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
103821752 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
103821770 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* * *
103821788 TTACTAAATAACTGATTG
1 TTACTGAATAATTGACTG
*
103821806 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
103821824 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
** *
103821843 TTACTGAATACCTGA-TT
1 TTACTGAATAATTGACTG
*
103821860 TTACTGAATAATTGACTA
1 TTACTGAATAATTGACTG
*
103821878 TTACTGGATAA
1 TTACTGAATAA
103821889 CCGATCAATT
Statistics
Matches: 141, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
17 20 0.14
18 102 0.72
19 19 0.13
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:103821823 original size:72 final size:72
Alignment explanation
Indices: 103821686--103821852 Score: 185
Period size: 72 Copynumber: 2.3 Consensus size: 72
103821676 AAAGGTATAA
* * ** * * * *
103821686 AATAACTGATTATTACTGAATAATTAACTGTTACTGGATAATTGACTGTTACTGGATATTAGACT
1 AATAACTGAATATTACTGAATAATTAACTATTACTAAATAACTGACTGTCACTGAATAATAGACT
103821751 GTTACTG
66 GTTACTG
* *
103821758 AATAACTGAATATTACTGAATAATTGA-TCATTACTAAATAACTGATTGTCACTGAATGAAT-GA
1 AATAACTGAATATTACTGAATAATTAACT-ATTACTAAATAACTGACTGTCACTGAAT-AATAGA
103821821 CTGTTACTG
64 CTGTTACTG
* *
103821830 AATAACTTAATTGTTACTGAATA
1 AATAACTGAA-TATTACTGAATA
103821853 CCTGATTTTA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
71 1 0.01
72 66 0.82
73 13 0.16
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTAACTATTACTAAATAACTGACTGTCACTGAATAATAGACT
GTTACTG
Found at i:103821966 original size:18 final size:18
Alignment explanation
Indices: 103821909--103821968 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
103821899 GATCGATACT
* *
103821909 GAATAACTGGTTATTATC
1 GAATAACTGATTGTTATC
* *
103821927 GAATAATTGATTGTTACC
1 GAATAACTGATTGTTATC
* *
103821945 GAATAACTGACTGTTATT
1 GAATAACTGATTGTTATC
103821963 GAATAA
1 GAATAA
103821969 ATAATTGTTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (18 bp):
GAATAACTGATTGTTATC
Found at i:103821967 original size:36 final size:36
Alignment explanation
Indices: 103821895--103821977 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 36
103821885 ATAACCGATC
* * * **
103821895 AATTGATCGATACTGAATAACTGGTTATTATCGAAT
1 AATTGATTGTTACCGAATAACTGACTATTATCGAAT
* *
103821931 AATTGATTGTTACCGAATAACTGACTGTTATTGAAT
1 AATTGATTGTTACCGAATAACTGACTATTATCGAAT
* *
103821967 AAATAATTGTT
1 AATTGATTGTT
103821978 CTGATTGTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (36 bp):
AATTGATTGTTACCGAATAACTGACTATTATCGAAT
Found at i:103824549 original size:26 final size:26
Alignment explanation
Indices: 103824513--103824562 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
103824503 ATTCTATAAC
103824513 TTCTTCAACATGCTAGAATCGGTTCT
1 TTCTTCAACATGCTAGAATCGGTTCT
103824539 TTCTTCAACATGCTAGAATCGGTT
1 TTCTTCAACATGCTAGAATCGGTT
103824563 TTTGGAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (26 bp):
TTCTTCAACATGCTAGAATCGGTTCT
Found at i:103825408 original size:20 final size:19
Alignment explanation
Indices: 103825356--103825408 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
103825346 ATATATTTTA
103825356 TTTTTAAAAAAT-ATTAAT
1 TTTTTAAAAAATAATTAAT
* *
103825374 TTTTAAAATAAATAATTGAT
1 TTTTTAAA-AAATAATTAAT
103825394 GTTTTTAAAAAATAA
1 -TTTTTAAAAAATAA
103825409 ACTATATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.24
19 4 0.14
20 11 0.38
21 7 0.24
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (19 bp):
TTTTTAAAAAATAATTAAT
Found at i:103825687 original size:30 final size:30
Alignment explanation
Indices: 103825651--103825709 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
103825641 ACTTTTCAAG
* *
103825651 TAAAAAATGCATTTTGTAAAAAGTATTTTT
1 TAAAAAATGCATCTTATAAAAAGTATTTTT
**
103825681 TAAAAAATGTGTCTTATAAAAAGTATTTT
1 TAAAAAATGCATCTTATAAAAAGTATTTT
103825710 ATCTCGTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.42
Consensus pattern (30 bp):
TAAAAAATGCATCTTATAAAAAGTATTTTT
Found at i:103826361 original size:14 final size:14
Alignment explanation
Indices: 103826337--103826381 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
103826327 TAAATTATAT
103826337 TTTTTTC-AAATAA
1 TTTTTTCAAAATAA
103826350 TTTTTTCAAAAT-A
1 TTTTTTCAAAATAA
*
103826363 -TTTCTCAAAAATAA
1 TTTTTTC-AAAATAA
103826377 TTTTT
1 TTTTT
103826382 ACTATAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 5 0.19
13 13 0.50
14 5 0.19
15 3 0.12
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTTTTCAAAATAA
Found at i:103843179 original size:20 final size:20
Alignment explanation
Indices: 103843154--103843201 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
103843144 CTGAGGACAT
103843154 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
103843174 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
103843194 GGGCGTGT
1 GGGCGTGT
103843202 GACTCTCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.12
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAC
Found at i:103854417 original size:13 final size:13
Alignment explanation
Indices: 103854399--103854423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103854389 TGGTGAATCC
103854399 GAGTAGTTCCCTT
1 GAGTAGTTCCCTT
103854412 GAGTAGTTCCCT
1 GAGTAGTTCCCT
103854424 ATCTCCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (13 bp):
GAGTAGTTCCCTT
Done.