Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 335 of 410
Found at i:103856828 original size:15 final size:16
Alignment explanation
Indices: 103856808--103856840 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
103856798 ATATATTTTT
103856808 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
103856823 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
103856840 T
1 T
103856841 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:103856957 original size:24 final size:22
Alignment explanation
Indices: 103856902--103856971 Score: 76
Period size: 21 Copynumber: 3.3 Consensus size: 22
103856892 TTAGTATTAT
103856902 TTTATT-TGTTTT-AATATTTG
1 TTTATTATGTTTTAAATATTTG
103856922 TTT-TTATGTTTTAAATATATTG
1 TTTATTATGTTTTAAATAT-TTG
* *
103856944 ATTTATTATATTTTAAA-ATTTT
1 -TTTATTATGTTTTAAATATTTG
103856966 TTTATT
1 TTTATT
103856972 TAATGAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
19 2 0.05
20 9 0.21
21 11 0.26
22 5 0.12
23 5 0.12
24 11 0.26
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (22 bp):
TTTATTATGTTTTAAATATTTG
Found at i:103856969 original size:21 final size:21
Alignment explanation
Indices: 103856901--103856971 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 21
103856891 TTTAGTATTA
*
103856901 TTTTATT-TGTTTTAATATTT
1 TTTTATTATGTTTTAAAATTT
*
103856921 GTTT-TTATGTTTTAAATATATT
1 TTTTATTATGTTTTAAA-AT-TT
* *
103856943 GATTTATTATATTTTAAAATTT
1 -TTTTATTATGTTTTAAAATTT
103856965 TTTTATT
1 TTTTATT
103856972 TAATGAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 2 0.05
20 11 0.27
21 8 0.20
22 4 0.10
23 5 0.12
24 11 0.27
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.68
Consensus pattern (21 bp):
TTTTATTATGTTTTAAAATTT
Found at i:103862078 original size:46 final size:46
Alignment explanation
Indices: 103862028--103862203 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
103862018 TGGTTGAGCA
103862028 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
103862074 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
103862119 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
103862167 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
103862204 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:103862184 original size:93 final size:93
Alignment explanation
Indices: 103862025--103862196 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
103862015 GGATGGTTGA
* ***
103862025 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
103862090 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
103862118 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
103862183 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
103862197 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:103871275 original size:17 final size:19
Alignment explanation
Indices: 103871243--103871283 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
103871233 CATAATACGG
103871243 GCCTATGTAGGCCCACAT-
1 GCCTATGTAGGCCCACATA
*
103871261 GCCTGTGTA-GCCCACATA
1 GCCTATGTAGGCCCACATA
103871279 GCCTA
1 GCCTA
103871284 GAAATGGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (19 bp):
GCCTATGTAGGCCCACATA
Found at i:103881754 original size:44 final size:44
Alignment explanation
Indices: 103881685--103882163 Score: 322
Period size: 44 Copynumber: 10.6 Consensus size: 44
103881675 GGATGGATTG
* **
103881685 AAATCATTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAC
1 AAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * * *
103881730 TAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATT-AAAATCGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AC
* * * *
103881774 TAATCTTATCTCCTTGAAATTGCAGTAGAGCAGATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * * * * *
103881819 AAATCTTATTTTCCTGAAGTTGTAGTGGAACAAATTAAAACTACAAATTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-----GA-AGA-TAC
* * *
103881870 AAATCTTATCTCCCTGAAGTTACAGTTGAGCAAATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * * *
103881915 AAATCTTATCTCTCTGGAA-TTGCAATAGAGCAGATTAAAGCTA-
1 AAATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * *
103881958 TAATCCTTAACTCCCTAAAGTTGCAGTGGAGTA-AGTTGAA-ATTAC
1 AAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGA-TAC
* * * * *
103882003 AAGTCTCATCTCCTTGAAGATGCAGTGGAGCAGATTGAAGACAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * * * *
103882047 GAATCTTATCTCCCTAAAGTTACAGTGGAGCATATTGAAAATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * **
103882092 AAATATTATCTCCCTGAAATTGTAGTGGAGCAGATTGAAGCGAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
103882136 AAGTCCTATAC-CTCTGAAGTTGCAGTGG
1 AAATCTTAT-CTCCCTGAAGTTGCAGTGG
103882164 GTCGGATTAA
Statistics
Matches: 330, Mismatches: 83, Indels: 43
0.72 0.18 0.09
Matches are distributed among these distances:
43 8 0.02
44 172 0.52
45 110 0.33
46 4 0.01
50 1 0.00
51 33 0.10
52 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
Found at i:103881952 original size:96 final size:96
Alignment explanation
Indices: 103881775--103881953 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
103881765 TAAAATCGCT
* * * *
103881775 AATCTTATCTCCTTGAAATTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTTCCTGAAGTT
1 AATCTTATCTCCCTGAAATTACAGTAGAGCAAATTGAAGATAGCAAATCTTATTCTCCTGAAGTT
* * *
103881840 GTAGTGGAACAAATTAAAACTACAAATTACA
66 GCAATAGAACAAATTAAAACTACAAATTACA
* *
103881871 AATCTTATCTCCCTGAAGTTACAGTTGAGCAAATTGAAGATAGCAAATCTTA-TCTCTCTGGAA-
1 AATCTTATCTCCCTGAAATTACAGTAGAGCAAATTGAAGATAGCAAATCTTATTCTC-CT-GAAG
* *
103881934 TTGCAATAGAGCAGATTAAA
64 TTGCAATAGAACAAATTAAA
103881954 GCTATAATCC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
95 3 0.04
96 64 0.91
97 3 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (96 bp):
AATCTTATCTCCCTGAAATTACAGTAGAGCAAATTGAAGATAGCAAATCTTATTCTCCTGAAGTT
GCAATAGAACAAATTAAAACTACAAATTACA
Found at i:103882004 original size:140 final size:139
Alignment explanation
Indices: 103881731--103881987 Score: 320
Period size: 140 Copynumber: 1.8 Consensus size: 139
103881721 TGAAGCCACT
* * * *
103881731 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATCGCTAATCTTATCTCCTTGAAATTG
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAATAGCAAATCTTATCTCCTTGAAATTG
* * ** * * *
103881796 CAGTAGAGCAGATTGAAGATAGCAAATCTTATTTTCCTGAAGTTGTAGTGGAACAAATTAAAACT
66 CAATAGAGCAGATTAAAGATA-CAAATCTTAACTCCCTAAAGTTGCAGTGGAACAAATTAAAACT
103881861 ACAAATTACA
130 ACAAATTACA
* * *
103881871 AATCTTATCTCCCTGAAGTTACAGTTGAGCAAATTGAAGATAGCAAATCTTATCT-CTCTGGAAT
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATT-AAAATAGCAAATCTTATCTCCT-TGAAAT
* *
103881935 TGCAATAGAGCAGATTAAAGCTA-TAATCCTTAACTCCCTAAAGTTGCAGTGGA
64 TGCAATAGAGCAGATTAAAGATACAAAT-CTTAACTCCCTAAAGTTGCAGTGGA
103881988 GTAAGTTGAA
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
139 3 0.03
140 54 0.55
141 41 0.42
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (139 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTAAAATAGCAAATCTTATCTCCTTGAAATTG
CAATAGAGCAGATTAAAGATACAAATCTTAACTCCCTAAAGTTGCAGTGGAACAAATTAAAACTA
CAAATTACA
Found at i:103882156 original size:89 final size:87
Alignment explanation
Indices: 103881871--103882163 Score: 256
Period size: 89 Copynumber: 3.3 Consensus size: 87
103881861 ACAAATTACA
* * * * * *
103881871 AATCTTAT-CTCCCTGAAGTTACAGTTGAGCAAATTGAAGATAGCAAATCTTATCTCTCTGGAAT
1 AATCCTATACTCCCTAAAGTTACAGTGGAGC-AATTGAAAATAGCAAATCTTATCTCCCTGAAAT
* * * *
103881935 TGCAATAGAGCAGATTAAAGCTAT
65 TGCAGTGGAGCAGATTGAAGC-AC
* * * * * *
103881959 AATCCT-TAACTCCCTAAAGTTGCAGTGGAGTAAGTTGAAATTA-CAAGTCTCATCTCCTTGAAG
1 AATCCTAT-ACTCCCTAAAGTTACAGTGGAGCAA-TTGAAAATAGCAAATCTTATCTCCCTGAA-
103882022 A-TGCAGTGGAGCAGATTGAAGACAC
63 ATTGCAGTGGAGCAGATTGAAG-CAC
* *
103882047 GAATCTTAT-CTCCCTAAAGTTACAGTGGAGCATATTGAAAATAGCAAATATTATCTCCCTGAAA
1 -AATCCTATACTCCCTAAAGTTACAGTGGAGCA-ATTGAAAATAGCAAATCTTATCTCCCTGAAA
*
103882111 TTGTAGTGGAGCAGATTGAAGCGAC
64 TTGCAGTGGAGCAGATTGAAGC-AC
* * *
103882136 AAGTCCTATAC-CTCTGAAGTTGCAGTGG
1 AA-TCCTATACTCCCTAAAGTTACAGTGG
103882164 GTCGGATTAA
Statistics
Matches: 163, Mismatches: 29, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
87 1 0.01
88 72 0.44
89 88 0.54
90 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (87 bp):
AATCCTATACTCCCTAAAGTTACAGTGGAGCAATTGAAAATAGCAAATCTTATCTCCCTGAAATT
GCAGTGGAGCAGATTGAAGCAC
Found at i:103883894 original size:4 final size:4
Alignment explanation
Indices: 103883885--103883921 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
103883875 TTGTTCTTAA
*
103883885 TATT TATT TATT TATG TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT T
103883922 GTCCTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:103889244 original size:19 final size:19
Alignment explanation
Indices: 103889190--103889254 Score: 85
Period size: 20 Copynumber: 3.3 Consensus size: 19
103889180 CGAAAAATGA
103889190 TTTCTGGAAAATGATTTACT
1 TTTCT-GAAAATGATTTACT
*
103889210 TTTCAGTAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
* *
103889230 TTTCTGAACATGATTTGCT
1 TTTCTGAAAATGATTTACT
103889249 TTTCTG
1 TTTCTG
103889255 GTGTTTGGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
19 18 0.45
20 22 0.55
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:103896462 original size:18 final size:18
Alignment explanation
Indices: 103896435--103896469 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103896425 CAAAATCAGT
*
103896435 AAGCATCAAAATAGTTTA
1 AAGCACCAAAATAGTTTA
*
103896453 AAGCACCAAACTAGTTT
1 AAGCACCAAAATAGTTT
103896470 GGCACATCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (18 bp):
AAGCACCAAAATAGTTTA
Found at i:103901255 original size:137 final size:137
Alignment explanation
Indices: 103901009--103901282 Score: 505
Period size: 137 Copynumber: 2.0 Consensus size: 137
103900999 ACTTACAAGA
*
103901009 AAATAATATGACGAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
1 AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
*
103901074 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTCTTT-AAAAACT
66 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTT-TTTAAAAAAAT
103901138 AGGATGAT
130 AGGATGAT
103901146 AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
1 AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
*
103901211 AAGCACTAGTAATACAATAAACGAAATAAAATTTACAACAACAAATAAAAGTTTTTAAAAAAATA
66 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTTTTAAAAAAATA
103901276 GGATGAT
131 GGATGAT
103901283 CCGTGTTACA
Statistics
Matches: 133, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
136 3 0.02
137 130 0.98
ACGTcount: A:0.60, C:0.08, G:0.09, T:0.23
Consensus pattern (137 bp):
AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTTTTAAAAAAATA
GGATGAT
Found at i:103921455 original size:16 final size:16
Alignment explanation
Indices: 103921417--103921461 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
103921407 ATGTATTGGC
*
103921417 AAAAGCCGAAAAGTCG
1 AAAAGCTGAAAAGTCG
*
103921433 AAAAGCTGAAATGTCG
1 AAAAGCTGAAAAGTCG
103921449 AAAAGCT-AAAAGT
1 AAAAGCTGAAAAGT
103921462 TTGGCTACAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.51, C:0.13, G:0.22, T:0.13
Consensus pattern (16 bp):
AAAAGCTGAAAAGTCG
Found at i:103921722 original size:29 final size:28
Alignment explanation
Indices: 103921670--103921782 Score: 138
Period size: 28 Copynumber: 4.0 Consensus size: 28
103921660 GTGAGCATGA
* *
103921670 ATATGAATGTGA-CGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
103921697 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
103921726 ATATACAGGTGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* * *
103921754 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
103921782 A
1 A
103921783 AATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
27 11 0.15
28 40 0.53
29 24 0.32
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:103921788 original size:56 final size:57
Alignment explanation
Indices: 103921683--103921791 Score: 166
Period size: 56 Copynumber: 1.9 Consensus size: 57
103921673 TGAATGTGAC
* *
103921683 GGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 GGGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATT
* * *
103921740 GGGCTTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAAATACAGGT
1 GGGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGT
103921792 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
56 24 0.51
57 23 0.49
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (57 bp):
GGGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:103924778 original size:59 final size:61
Alignment explanation
Indices: 103924707--103924823 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
103924697 ATCACTTTAA
* * * * *
103924707 TATTAAATTAATATAATTTTTATC-CA-GATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATGTTTATCACAGGATAAACATTAAATTAAATTTAATATTAAATCT
103924766 TATTAAAATAATAGAATGTTTATCTACAGGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATGTTTATC-ACAGGATAAACATTAAATTAAATTTAATATTAA
103924824 GATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
61 2 0.04
62 27 0.54
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (61 bp):
TATTAAAATAATAGAATGTTTATCACAGGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:103926953 original size:15 final size:16
Alignment explanation
Indices: 103926926--103926955 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
103926916 TATGCATGTA
103926926 AAATATAAAAAGACAG
1 AAATATAAAAAGACAG
103926942 AAATAT-AAAAGACA
1 AAATATAAAAAGACA
103926956 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.13
Consensus pattern (16 bp):
AAATATAAAAAGACAG
Found at i:103935162 original size:27 final size:27
Alignment explanation
Indices: 103935132--103935331 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
103935122 ATTACCAAAG
* * *
103935132 TACCCTCAATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
103935159 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
103935186 CACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
103935213 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
103935240 TACCTTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
103935267 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
103935294 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
103935321 TACCCTCGATT
1 TACCCTCGATT
103935332 GTGAAATTAC
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:103935213 original size:54 final size:54
Alignment explanation
Indices: 103935132--103935331 Score: 256
Period size: 54 Copynumber: 3.7 Consensus size: 54
103935122 ATTACCAAAG
* * * * * * *
103935132 TACCCTCAATTTATAGAATCACTGTTTTACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
* *
103935186 CACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
* * * * *
103935240 TACCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
* *
103935294 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
103935332 GTGAAATTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
Found at i:103935229 original size:81 final size:81
Alignment explanation
Indices: 103935132--103935331 Score: 267
Period size: 81 Copynumber: 2.5 Consensus size: 81
103935122 ATTACCAAAG
* * *
103935132 TACCCTCAATTTATAGAATCACTGTTTTACCCTT-GATTTATAGAATTACTGTTTCACCCTCGAT
1 TACCCTCAATTTATAGAATCACTATTTTA-CCTTCGATTTACAGAATTACCGTTTCACCCTCGAT
* *
103935196 TTACAAAATTATCGTTT
65 TTACAAAATTACCATTT
* * *
103935213 TACCCTCGATTTATAGAATTACTATTTTACCTTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATCACTATTTTACCTTCGATTTACAGAATTACCGTTTCACCCTCGATT
103935278 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * * *
103935294 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCAATTTATAGAATCACTATTTTACCTTCGATT
103935332 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 4 0.04
81 101 0.96
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATCACTATTTTACCTTCGATTTACAGAATTACCGTTTCACCCTCGATT
TACAAAATTACCATTT
Found at i:103935393 original size:27 final size:27
Alignment explanation
Indices: 103935363--103935485 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
103935353 TGTAGGATAG
103935363 AATTACCAAAATACCTCTAGTTTGTAA
1 AATTACCAAAATACCTCTAGTTTGTAA
*
103935390 AATTACCAAAATGCCTCTAGTTTGTAA
1 AATTACCAAAATACCTCTAGTTTGTAA
* * *
103935417 AATTACCGAAATA-CTACTGGTTTGTGA
1 AATTACCAAAATACCT-CTAGTTTGTAA
* *
103935444 AATTACCGAAATACCT-TCAATTTGTAA
1 AATTACCAAAATACCTCT-AGTTTGTAA
103935471 AATTACCAAAATACC
1 AATTACCAAAATACC
103935486 CTGATTTACA
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.04
27 79 0.94
28 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCTCTAGTTTGTAA
Found at i:103935667 original size:27 final size:27
Alignment explanation
Indices: 103935592--103935693 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
103935582 TTACCAAAAC
* * * * *
103935592 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACCATAAT
* * *
103935619 ACCCCTAATA-GGTAAAAAGACCGTAA-
1 ACCCCT-GTAGGGTAAAATGACCATAAT
*
103935645 AGCCCCTGTAGGGTAAAGTGACCATAAT
1 A-CCCCTGTAGGGTAAAATGACCATAAT
* *
103935673 ACCCTTGTATGGTAAAATGAC
1 ACCCCTGTAGGGTAAAATGAC
103935694 GAATATGCCC
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACCATAAT
Found at i:103936497 original size:25 final size:25
Alignment explanation
Indices: 103936459--103936528 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
103936449 AGGAAGTGCT
* * *
103936459 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
103936484 AAAAGGACTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
103936509 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
103936529 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:103936804 original size:31 final size:30
Alignment explanation
Indices: 103936748--103936830 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 30
103936738 AGCTTATAGT
*
103936748 AAAGGCTTCGGCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
*
103936778 AAAGGCTTCGGCCCAGTGGTATGATTTATGA
1 AAAGGCTTCGG-CCAGTGATATGATTTATGA
*
103936809 AAAGGCATCGGTCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
103936831 TCGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 15 0.32
31 32 0.68
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:103938574 original size:27 final size:27
Alignment explanation
Indices: 103938539--103938603 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
103938529 CTTCCTTCTA
* * *
103938539 CTACAGTTCTTACTATTCCTATTGTTC
1 CTACAGTTCCTACTATTCCTACTGCTC
* *
103938566 CTACTGTTCCTATTATTCCTACTGCTC
1 CTACAGTTCCTACTATTCCTACTGCTC
103938593 CTACAGTTCCT
1 CTACAGTTCCT
103938604 GCTGTTTCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.17, C:0.31, G:0.08, T:0.45
Consensus pattern (27 bp):
CTACAGTTCCTACTATTCCTACTGCTC
Found at i:103938602 original size:18 final size:18
Alignment explanation
Indices: 103938539--103938625 Score: 77
Period size: 18 Copynumber: 4.8 Consensus size: 18
103938529 CTTCCTTCTA
* *
103938539 CTACAGTTCTTACTATTC
1 CTACAGTTCCTACTGTTC
**
103938557 CTATTGTTCCTACTGTTC
1 CTACAGTTCCTACTGTTC
* *
103938575 CTATTA-TTCCTACTGCTC
1 CTA-CAGTTCCTACTGTTC
* *
103938593 CTACAGTTCCTGCTGTTT
1 CTACAGTTCCTACTGTTC
*
103938611 CTACCGTTCCTACTG
1 CTACAGTTCCTACTG
103938626 CATCTACTAC
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
17 1 0.02
18 53 0.96
19 1 0.02
ACGTcount: A:0.15, C:0.31, G:0.10, T:0.44
Consensus pattern (18 bp):
CTACAGTTCCTACTGTTC
Found at i:103938631 original size:18 final size:17
Alignment explanation
Indices: 103938581--103938632 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
103938571 GTTCCTATTA
103938581 TTCCTACTGCTCCTACAG
1 TTCCTACTGCT-CTACAG
* * *
103938599 TTCCTGCTGTTTCTACCG
1 TTCCTACTG-CTCTACAG
103938617 TTCCTACTGCATCTAC
1 TTCCTACTGC-TCTAC
103938633 TACTAATACT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.13, C:0.37, G:0.12, T:0.38
Consensus pattern (17 bp):
TTCCTACTGCTCTACAG
Found at i:103940431 original size:21 final size:21
Alignment explanation
Indices: 103940407--103940450 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
103940397 CTGGATAAGG
103940407 TAGCTAAGGAATACAAAATAA
1 TAGCTAAGGAATACAAAATAA
103940428 TAGCTAAGGAATACAAAATAA
1 TAGCTAAGGAATACAAAATAA
103940449 TA
1 TA
103940451 CCTTCAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.14, T:0.20
Consensus pattern (21 bp):
TAGCTAAGGAATACAAAATAA
Found at i:103943812 original size:20 final size:20
Alignment explanation
Indices: 103943789--103944012 Score: 144
Period size: 20 Copynumber: 11.2 Consensus size: 20
103943779 AAGGGGCATG
103943789 AAAGTGCAATCAGGGGTACC
1 AAAGTGCAATCAGGGGTACC
* * * **
103943809 AAAGTACAAACAGGGGCATG
1 AAAGTGCAATCAGGGGTACC
*
103943829 TAAGTGCAATCAGGGGTACC
1 AAAGTGCAATCAGGGGTACC
* * *
103943849 GAAGTGCAAACAGGGGCACC
1 AAAGTGCAATCAGGGGTACC
* *
103943869 TAAA-TGTAATCAGGGGTACA
1 -AAAGTGCAATCAGGGGTACC
* * * **
103943889 AAAGTACAAACAGGGGCATG
1 AAAGTGCAATCAGGGGTACC
* * **
103943909 AGAGTGCTATCAGGGGTATT
1 AAAGTGCAATCAGGGGTACC
* * * *
103943929 AAAGTACAAACAGGGGCACG
1 AAAGTGCAATCAGGGGTACC
* *
103943949 AGAGTGTAATCAGGGGTACC
1 AAAGTGCAATCAGGGGTACC
* * * *
103943969 AAAGTACAAACAGGGGCACG
1 AAAGTGCAATCAGGGGTACC
* *
103943989 TAAGTGCAATCAAGGGTACC
1 AAAGTGCAATCAGGGGTACC
103944009 AAAG
1 AAAG
103944013 CACAAACATG
Statistics
Matches: 145, Mismatches: 57, Indels: 4
0.70 0.28 0.02
Matches are distributed among these distances:
19 3 0.02
20 140 0.97
21 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.30, T:0.15
Consensus pattern (20 bp):
AAAGTGCAATCAGGGGTACC
Found at i:103943835 original size:40 final size:40
Alignment explanation
Indices: 103943771--103944020 Score: 306
Period size: 40 Copynumber: 6.2 Consensus size: 40
103943761 GAGTTACCGG
* * * *
103943771 AGTATAAAAAGGGGCATGAAAGTGCAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* *
103943811 AGTACAAACAGGGGCATGTAAGTGCAATCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* * * * *
103943851 AGTGCAAACAGGGGCACCTAAATGTAATCAGGGGTACAAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* * **
103943891 AGTACAAACAGGGGCATG-AGAGTGCTATCAGGGGTATTAA
1 AGTACAAACAGGGGCACGTA-AGTGCAATCAGGGGTACCAA
*
103943931 AGTACAAACAGGGGCACG-AGAGTGTAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTA-AGTGCAATCAGGGGTACCAA
*
103943971 AGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
*
103944011 AGCACAAACA
1 AGTACAAACA
103944021 TGCAATTTAC
Statistics
Matches: 181, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 179 0.99
41 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.30, T:0.14
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
Found at i:103944549 original size:21 final size:21
Alignment explanation
Indices: 103944511--103944550 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
103944501 TCAACTTTCT
*
103944511 TAATTAAGCTTTAATAAATTA
1 TAATTAAGCTCTAATAAATTA
103944532 TAATTAAGC-CTAATTAAAT
1 TAATTAAGCTCTAA-TAAAT
103944551 CACTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40
Consensus pattern (21 bp):
TAATTAAGCTCTAATAAATTA
Found at i:103946128 original size:22 final size:22
Alignment explanation
Indices: 103946102--103946145 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
103946092 AATGTTAGAT
103946102 TATAAGTTAGATGTTTGAGTTA
1 TATAAGTTAGATGTTTGAGTTA
*
103946124 TATAAGTTAGTTGTTTGAGTTA
1 TATAAGTTAGATGTTTGAGTTA
103946146 CAAAATACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (22 bp):
TATAAGTTAGATGTTTGAGTTA
Found at i:103946776 original size:17 final size:18
Alignment explanation
Indices: 103946744--103946777 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103946734 TAGTCTAATT
*
103946744 AAAAATTTATTAAAAATA
1 AAAAATTTATAAAAAATA
103946762 AAAAATTT-TAAAAAAT
1 AAAAATTTATAAAAAAT
103946778 CTAATTCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATTTATAAAAAATA
Found at i:103949471 original size:147 final size:147
Alignment explanation
Indices: 103949204--103949503 Score: 555
Period size: 147 Copynumber: 2.0 Consensus size: 147
103949194 ATTTTTGAGT
**
103949204 ATTTTTATAAAATACATACCGGTGCTGTTTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
1 ATTTTTATAAAATACATACCGGTGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
* *
103949269 AAATGTAATGATAGTTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCGACAACAC
66 AAATGTAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
103949334 CTGTTGTGCAATGTTGA
131 CTGTTGTGCAATGTTGA
103949351 ATTTTTATAAAATACATACCGGTGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
1 ATTTTTATAAAATACATACCGGTGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
*
103949416 AAATGTAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCGTGACATTTCAACAACAC
66 AAATGTAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
103949481 CTGTTGTGCAATGTTGA
131 CTGTTGTGCAATGTTGA
103949498 ATTTTT
1 ATTTTT
103949504 CTATTTACAC
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
147 148 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (147 bp):
ATTTTTATAAAATACATACCGGTGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
AAATGTAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
CTGTTGTGCAATGTTGA
Found at i:103950171 original size:22 final size:21
Alignment explanation
Indices: 103950123--103950171 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
103950113 ATTTTATTGT
103950123 TATTTTTTATTATTTTGTTAC
1 TATTTTTTATTATTTTGTTAC
*
103950144 TCTTTTCTTATTATTTT-TTCAC
1 TATTTT-TTATTATTTTGTT-AC
103950166 TATTTT
1 TATTTT
103950172 GCTACCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.16, C:0.10, G:0.02, T:0.71
Consensus pattern (21 bp):
TATTTTTTATTATTTTGTTAC
Found at i:103950208 original size:14 final size:14
Alignment explanation
Indices: 103950189--103950218 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
103950179 TTTCACAATA
103950189 TGTTGTTACTATTT
1 TGTTGTTACTATTT
*
103950203 TGTTGTTATTATTT
1 TGTTGTTACTATTT
103950217 TG
1 TG
103950219 ATATTGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.17, T:0.67
Consensus pattern (14 bp):
TGTTGTTACTATTT
Found at i:103950654 original size:53 final size:53
Alignment explanation
Indices: 103950580--103950727 Score: 201
Period size: 53 Copynumber: 2.8 Consensus size: 53
103950570 CACGTAGTTA
*
103950580 TGAAGGTCATTGATTTCGATGCCTACCCACCTTATTAAGAAACCATGTAGTGC
1 TGAAGATCATTGATTTCGATGCCTACCCACCTTATTAAGAAACCATGTAGTGC
* * * *
103950633 TGAAGATCATTTATTAT-GATGCCTACCAACGTTATTAAGAAACCATGTAGTTC
1 TGAAGATCATTGATT-TCGATGCCTACCCACCTTATTAAGAAACCATGTAGTGC
* *
103950686 TGAAGATCATTGATTTCAATCCCTACCC-CCATTATTAAGAAA
1 TGAAGATCATTGATTTCGATGCCTACCCACC-TTATTAAGAAA
103950728 GAGAGTCGCA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
52 2 0.02
53 79 0.96
54 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (53 bp):
TGAAGATCATTGATTTCGATGCCTACCCACCTTATTAAGAAACCATGTAGTGC
Found at i:103950845 original size:38 final size:38
Alignment explanation
Indices: 103950794--103950870 Score: 138
Period size: 38 Copynumber: 2.0 Consensus size: 38
103950784 GAAAGTGGTA
103950794 GCAGAGGGAGGTAATCAATCAAAAGTTGAATGTAAATG
1 GCAGAGGGAGGTAATCAATCAAAAGTTGAATGTAAATG
103950832 GCAGAGAGG-GGTAATCAATCAAAAGTTGAATGTAAATG
1 GCAGAG-GGAGGTAATCAATCAAAAGTTGAATGTAAATG
103950870 G
1 G
103950871 TCTTTTTATC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 36 0.95
39 2 0.05
ACGTcount: A:0.42, C:0.08, G:0.30, T:0.21
Consensus pattern (38 bp):
GCAGAGGGAGGTAATCAATCAAAAGTTGAATGTAAATG
Found at i:103952306 original size:2 final size:2
Alignment explanation
Indices: 103952299--103952331 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
103952289 TTGAGTTTAT
103952299 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103952332 TAATAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103957657 original size:21 final size:21
Alignment explanation
Indices: 103957611--103957659 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
103957601 AATATTTACG
*
103957611 AAGTGTCATTAAAAAATTTTA
1 AAGTTTCATTAAAAAATTTTA
*
103957632 AAGTTTCATTGAAAAATTTTA
1 AAGTTTCATTAAAAAATTTTA
103957653 AAGTTTC
1 AAGTTTC
103957660 GATAGTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (21 bp):
AAGTTTCATTAAAAAATTTTA
Found at i:103958901 original size:96 final size:96
Alignment explanation
Indices: 103958735--103958920 Score: 241
Period size: 96 Copynumber: 1.9 Consensus size: 96
103958725 ATGTCATTAG
* ** * *
103958735 GGTTACCATGTTTCGGGTGCTGGTTTTGAATGTCCTACCGGTGGCTAAGTTCTGGCATGTGTTGT
1 GGTTACCATGTTTCGGGTGCTGGTATTGAATGTCCTACCAATGGCTAAGTTCTGACATGTGTTGC
* ** *
103958800 TGATACTTGACAGCTTGTGTGAGCAGACCCA
66 GGATACTCAAAAGCTTGTGTGAGCAGACCCA
* *
103958831 GGTTACCATGTTTTGGGTGCTGGTATTGAATGTCCTACCAATGGCTGAGGTTC-GACAT-TAGTT
1 GGTTACCATGTTTCGGGTGCTGGTATTGAATGTCCTACCAATGGCT-AAGTTCTGACATGT-GTT
103958894 GCGGATACTCAAAAGCTTGTGTGAGCA
64 GCGGATACTCAAAAGCTTGTGTGAGCA
103958921 ACATAATGTA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
95 1 0.01
96 71 0.92
97 5 0.06
ACGTcount: A:0.19, C:0.18, G:0.30, T:0.33
Consensus pattern (96 bp):
GGTTACCATGTTTCGGGTGCTGGTATTGAATGTCCTACCAATGGCTAAGTTCTGACATGTGTTGC
GGATACTCAAAAGCTTGTGTGAGCAGACCCA
Found at i:103968961 original size:32 final size:32
Alignment explanation
Indices: 103968919--103968985 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
103968909 TGACTTTCGA
103968919 TTTTTACTTTTA-TTTC-TAGTTGTACTTTTATT
1 TTTTTACTTTTACTTTCATAGTTGT--TTTTATT
*
103968951 TTTTTTCTTTTATCTTTCATAGTTGTTTTTATT
1 TTTTTACTTTTA-CTTTCATAGTTGTTTTTATT
103968984 TT
1 TT
103968986 ATCTGAGACT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
32 11 0.35
33 9 0.29
34 4 0.13
35 7 0.23
ACGTcount: A:0.13, C:0.09, G:0.06, T:0.72
Consensus pattern (32 bp):
TTTTTACTTTTACTTTCATAGTTGTTTTTATT
Found at i:103971737 original size:14 final size:14
Alignment explanation
Indices: 103971718--103971745 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103971708 TTAGTCAGAT
103971718 TTTTAGTTGGTTTA
1 TTTTAGTTGGTTTA
103971732 TTTTAGTTGGTTTA
1 TTTTAGTTGGTTTA
103971746 CGATTGCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.21, T:0.64
Consensus pattern (14 bp):
TTTTAGTTGGTTTA
Found at i:103973851 original size:25 final size:25
Alignment explanation
Indices: 103973817--103973871 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
103973807 GAATGTGGGG
*
103973817 GCGAGTTATGTAGAGGCTCACCGAC
1 GCGAGTTATGTAGAGGCTCACCAAC
* *
103973842 GCGAGTTATGTGGAGGCTCGCCAAC
1 GCGAGTTATGTAGAGGCTCACCAAC
103973867 GCGAG
1 GCGAG
103973872 ATGAGCATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.22, C:0.24, G:0.36, T:0.18
Consensus pattern (25 bp):
GCGAGTTATGTAGAGGCTCACCAAC
Found at i:103975026 original size:25 final size:23
Alignment explanation
Indices: 103974974--103975028 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
103974964 TATAAATAGT
103974974 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
103974997 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
103975022 AATAGTG
1 AATAGTG
103975029 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:103975108 original size:22 final size:22
Alignment explanation
Indices: 103975083--103975157 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
103975073 TATGAAATAG
*
103975083 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
103975105 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
103975130 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
103975152 AGATAA
1 ATATAA
103975158 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:103975127 original size:25 final size:25
Alignment explanation
Indices: 103975089--103975298 Score: 119
Period size: 25 Copynumber: 8.4 Consensus size: 25
103975079 ATAGATATAA
* *
103975089 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
103975114 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
103975137 -TAAAATATATACATAAGATAACATGTAGAA
1 AAAAAATATATACAT-A-AT-ATA-GT--AT
*
103975167 AAAAAATATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
103975192 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * * *
103975217 AATATATATATACGTAATATAGAAT
1 AAAAAATATATACATAATATAGTAT
** * *
103975242 -TTAGA-ATATACCTAATATA-T-T
1 AAAAAATATATACATAATATAGTAT
* *
103975263 AAAAGAATATATATATAATATAATAT
1 AAAA-AATATATACATAATATAGTAT
*
103975289 TAAAAATATA
1 AAAAAATATA
103975299 ATAATAACAA
Statistics
Matches: 140, Mismatches: 31, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.01
22 13 0.09
23 16 0.11
24 17 0.12
25 69 0.49
26 4 0.03
27 2 0.01
28 2 0.01
29 2 0.01
30 2 0.01
31 12 0.09
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:103975168 original size:27 final size:28
Alignment explanation
Indices: 103975138--103975209 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
103975128 TAATATAATT
103975138 AAAATATATACATAAGATAACAT-GTA-G
1 AAAATATATACATAA-ATAACATAGTATG
* * * * *
103975165 AAAAAAAATATATAAATAATATAGTATT
1 AAAATATATACATAAATAACATAGTATG
103975193 AAAGATATATACATAAA
1 AAA-ATATATACATAAA
103975210 ATAGTATAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
26 6 0.18
27 15 0.44
28 3 0.09
29 10 0.29
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAATATATACATAAATAACATAGTATG
Found at i:103975624 original size:16 final size:16
Alignment explanation
Indices: 103975586--103975624 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
103975576 ATCTCCAAAA
*
103975586 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
103975602 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
103975618 AATAACT
1 AAAAACT
103975625 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:103975822 original size:30 final size:30
Alignment explanation
Indices: 103975780--103975968 Score: 333
Period size: 30 Copynumber: 6.3 Consensus size: 30
103975770 TAGGTACAAG
* * *
103975780 TGGTGGTAGAGCAAGTGTGGCTAATGGAAT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
103975810 AGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
103975840 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
103975870 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
103975900 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
103975930 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
103975960 TAGTGGTGG
1 TGGTGGTGG
103975969 CAAAGGCTAG
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 153 1.00
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:103977026 original size:13 final size:14
Alignment explanation
Indices: 103976994--103977026 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
103976984 TGATTTTTTG
103976994 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
103977008 GAAAAACAGAATTT
1 GAAAAACAAAATTT
103977022 GAAAA
1 GAAAA
103977027 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:103977026 original size:180 final size:172
Alignment explanation
Indices: 103976651--103978061 Score: 828
Period size: 148 Copynumber: 8.4 Consensus size: 172
103976641 ACTAGACATT
* ** * * *
103976651 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
103976716 TTGATTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGTATGTGACCTGAGGCT
66 TTGATTTTTGAAAACAAAA-TTGAAAAACAGA-ATTGAAAATACCTCAG--CGTGTCCTGAGGCT
*
103976780 CAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAA-TTG
127 CAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAA-CA-AAATTTG
* * *
103976827 AAAAAAAAATCAATTGAAAATACCTCGGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGA--AATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATG
* *
103976892 AGTTGATTTTTTTGACAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAG
64 AGTTGA--TTTTTGA-AAACA-AAATTGAAAAACAG-AATTGAAAATACCTCAGCGTGTCCTGAG
*
103976957 GCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTG
124 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-G--AAACAAAATTTG
* *
103977009 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
103977073 GCTGATTTTTTTGAAACACAGAAATTGAAGAACAG-ATGGAAAACACCTCAGC--GTCTTGAGGT
65 GTTGA--TTTTTGAAA-ACA-AAATTGAAAAACAGAATTGAAAATACCTCAGCGTGTCCTGAGGC
*
103977135 TCAACTCACCTCTCGCAATATGAGCTGATTTTTT---------TTTG
126 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAATTTG
* * * *
103977173 AAAGACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
103977236 TTGATTTTTG---AC---A---AACAA-A-AATTGAAATTACCTCAGC--GTCTTGAGGTTCAAC
66 TTGATTTTTGAAAACAAAATTGAAAAACAGAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAC
* *
103977288 TCACCTATCGCAATATGAGCTGA-TTTTT---------TTT-
131 TCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAATTTG
* * * * *
103977319 AAAGACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
103977382 CTGATTTTT----------TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
66 TTGATTTTTGAAAACAAAATTGAAAAACAG-AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
103977437 CTCACCTCTCGCAATATGAGTTGA-TTTTTG--AC--------
130 CTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAATTTG
* * * * *
103977469 --AAACAAAAATTGAAATTACCTCAGCGTGT--CCTAAGGCTCAACTCACCTATCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
103977530 TTGATTTTT----------TTGAAAAATAGAAATT-CAAATACCTCAACGTGTCTTGAGGCTCAA
66 TTGATTTTTGAAAACAAAATTGAAAAACAG-AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
*
103977584 CTCACCTCTTC-CAATATGAGTTGA-GTTTTG--AC--------
130 CTCACCTC-TCGCAATATGAGTTGATTTTTTGAAACAAAATTTG
* * * * *
103977616 --AAACAAAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
* * *
103977677 TTGATTTTTTTAGAAACATAAATTAAAAAAACAAAATTGAAAATACCTCAGCGTGTCCTGAGGCT
66 TTGA-TTTTTGA-AAACA-AAATT-GAAAAACAGAATTGAAAATACCTCAGCGTGTCCTGAGGCT
** *
103977742 CAACT-ACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAATTTGTAAGGTAAAAATTG
127 CAACTCACCTCTCGCAATATGAGTTGATTT-----------TTTG-AA-ACAAAATTTG
* ** *
103977800 AAAAACAGAAATTGAAAATACCTCAAC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
* *
103977863 TTGATTTTTGAAAAACAGAAATTAAAAGCAGAAATTGAAAACAGAAATTAAAAATACCTCGGCGT
66 TTGATTTTTG-AAAACA-AAATT-------G--A---AAAACAG-AATTGAAAATACCTCAGCGT
* * *
103977928 GCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGCATAAA-TTG
116 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAA-CA-AAATTTG
* * * *
103977986 AAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATG
1 --AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATG
103978051 AGTTGATTTTT
64 AGTTGATTTTT
103978062 TTGAAAGATA
Statistics
Matches: 1038, Mismatches: 104, Indels: 172
0.79 0.08 0.13
Matches are distributed among these distances:
145 3 0.00
146 71 0.07
147 125 0.12
148 147 0.14
149 4 0.00
150 40 0.04
152 1 0.00
156 2 0.00
159 2 0.00
160 30 0.03
161 35 0.03
162 31 0.03
164 32 0.03
172 4 0.00
176 47 0.05
178 67 0.06
179 2 0.00
180 119 0.11
181 11 0.01
182 40 0.04
183 7 0.01
184 2 0.00
185 15 0.01
186 68 0.07
187 3 0.00
188 25 0.02
190 43 0.04
191 1 0.00
193 1 0.00
196 6 0.01
197 33 0.03
198 21 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (172 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAACAAAATTGAAAAACAGAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAATTTG
Found at i:103977083 original size:91 final size:89
Alignment explanation
Indices: 103976614--103977168 Score: 505
Period size: 91 Copynumber: 6.3 Consensus size: 89
103976604 TTAACTCATT
* * * * *
103976614 TCTCGCAATATGAATTGACTCTTT--AAAAC-TAGACATT-AAAAACAGAAATTGAAAATAGCTC
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATA-A-ATTGAAAAACAGAATTTGAAAATACCTC
** * *
103976675 AGCACGTGAGCCAAGGCTCAACTCACT
64 AGCGTGTGA-TCAAGGCTCAACTCACC
* * *
103976702 TCTCGCAATATGAGTTGA-TTTTT--AAAACA-AAATTTGTAAAACAGATTTTGAAAATACCTCG
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAA-TTGAAAAACAGAATTTGAAAATACCTCA
** * *
103976763 GTATGTGACCTGAGGCTCAACTCACC
65 GCGTGTGATC-AAGGCTCAACTCACC
* * * *
103976789 TCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTGAAAAA-AAAATCAATTGAAAATACCT
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAT---TTGAAAATACCT
*
103976852 CGGCGTGTGATCTAAGGCTCAACTCACC
63 CAGCGTGTGATC-AAGGCTCAACTCACC
* * * *
103976880 TCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCA
1 TCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCA
** * *
103976945 GCGTGTCCT-GAGGCTGAACTCACC
65 GCGTGTGATCAAGGCTCAACTCACC
103976969 TCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAACAGAATTTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTT-GAAAAACATAAA-TTGAAAAACAGAATTTGAAAATACCTC
103977033 AGCGTGTGAGTCAAGGCTCAACTCACC
64 AGCGTGTGA-TCAAGGCTCAACTCACC
* * * * * * *
103977060 ACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAG-A-TGGAAAACACCTCA
1 TCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCA
* * *
103977123 GCGTCT--T-GAGGTTCAACTCACC
65 GCGTGTGATCAAGGCTCAACTCACC
*
103977145 TCTCGCAATATGAGCTGATTTTTT
1 TCTCGCAATATGAGTTGATTTTTT
103977169 TTTGAAAGAC
Statistics
Matches: 398, Mismatches: 50, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
84 6 0.02
85 31 0.08
86 6 0.02
87 71 0.18
88 29 0.07
89 98 0.25
90 5 0.01
91 118 0.30
92 9 0.02
93 22 0.06
94 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (89 bp):
TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCAG
CGTGTGATCAAGGCTCAACTCACC
Found at i:103977368 original size:75 final size:74
Alignment explanation
Indices: 103977125--103977705 Score: 725
Period size: 73 Copynumber: 7.9 Consensus size: 74
103977115 ACACCTCAGC
* *
103977125 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTGAAAGACAGAAATTGAAA
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAA
103977190 ATACCTCAACGT
63 ATACCTCAACGT
* *
103977202 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAAT
*
103977265 ACCTC-A-GC
65 ACCTCAACGT
* * * *
103977273 GTCTTGAGGTTCAACTCACCTATCGCAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAT
103977338 ACCTCAACGT
65 ACCTCAACGT
* * *
103977348 GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAT
103977413 ACCTCAACGT
65 ACCTCAACGT
* *
103977423 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAAT
*
103977486 ACCTCAGCGT
65 ACCTCAACGT
* * * * * *
103977496 GTCCTAAGGCTCAACTCACCTATCGTAATATGAGTTGATTTTTTTGAAAAATAGAAATT-CAAAT
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAAT
103977560 ACCTCAACGT
65 ACCTCAACGT
* * *
103977570 GTCTTGAGGCTCAACTCACCTCTTC-CAATATGAGTTGA--GTTTTGACAAACAAAAATTGAAAT
1 GTCTTGAGGCTCAACTCACCTC-TCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAA
*
103977632 TACCTCAGCGT
64 TACCTCAACGT
* * * *
103977643 GTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT-AGAAACATAAATTAAAAA
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAA
103977706 AACAAAATTG
Statistics
Matches: 443, Mismatches: 45, Indels: 35
0.85 0.09 0.07
Matches are distributed among these distances:
71 37 0.08
72 19 0.04
73 156 0.35
74 62 0.14
75 132 0.30
76 1 0.00
77 36 0.08
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (74 bp):
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
CCTCAACGT
Found at i:103977906 original size:99 final size:96
Alignment explanation
Indices: 103977704--103978061 Score: 432
Period size: 99 Copynumber: 3.7 Consensus size: 96
103977694 ATAAATTAAA
*
103977704 AAAACA-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT-ACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
103977767 A--TTTGAAAAGCAGAATTTGTAAGGTAAAAATTG
66 ATTTTTGAAAAGCAGAA-AT-TAA-G-AGAAATTG
*
103977800 AAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
103977865 GATTTTTGAAAAACAGAAATTAAAAGCAGAAATTG
65 GATTTTTGAAAAGCAGAAATT--AAG-AGAAATTG
* * * *
103977900 AAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
103977965 ATTTTTGAAAAGCATAAATT----GAAA---
66 ATTTTTGAAAAGCAGAAATTAAGAGAAATTG
* * *
103977989 AAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
103978054 TGATTTTT
64 TGATTTTT
103978062 TTGAAAGATA
Statistics
Matches: 233, Mismatches: 20, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
89 23 0.10
91 41 0.18
92 4 0.02
97 6 0.03
98 35 0.15
99 100 0.43
100 9 0.04
101 15 0.06
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.25
Consensus pattern (96 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAGCAGAAATTAAGAGAAATTG
Found at i:103977916 original size:13 final size:13
Alignment explanation
Indices: 103977873--103977916 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
103977863 TTGATTTTTG
103977873 AAAAACAGAAATT
1 AAAAACAGAAATT
*
103977886 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
103977899 GAAAACAGAAATT
1 AAAAACAGAAATT
103977912 AAAAA
1 AAAAA
103977917 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:103990127 original size:25 final size:23
Alignment explanation
Indices: 103990075--103990129 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
103990065 TATAAATAGT
103990075 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
103990098 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
103990123 AATAGTG
1 AATAGTG
103990130 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:103990230 original size:25 final size:25
Alignment explanation
Indices: 103990192--103990401 Score: 119
Period size: 25 Copynumber: 8.4 Consensus size: 25
103990182 TAGATATAAA
* *
103990192 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
103990217 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
103990240 -TAAAATATATACATAAGATAACATGTAGAA
1 AAAAAATATATACAT-A-AT-ATA-GT--AT
*
103990270 AAAAAATATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
103990295 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * * *
103990320 AATATATATATACGTAATATAGAAT
1 AAAAAATATATACATAATATAGTAT
** * *
103990345 -TTAGA-ATATACCTAATATA-T-T
1 AAAAAATATATACATAATATAGTAT
* *
103990366 AAAAGAATATATATATAATATAATAT
1 AAAA-AATATATACATAATATAGTAT
*
103990392 TAAAAATATA
1 AAAAAATATA
103990402 ATAATAACAA
Statistics
Matches: 140, Mismatches: 31, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.01
22 13 0.09
23 16 0.11
24 17 0.12
25 69 0.49
26 4 0.03
27 2 0.01
28 2 0.01
29 2 0.01
30 2 0.01
31 12 0.09
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:103990271 original size:27 final size:28
Alignment explanation
Indices: 103990241--103990312 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 28
103990231 TAATATAATT
103990241 AAAATATATACATAAGATAACAT-GTA-G
1 AAAATATATACATAA-ATAACATAGTATG
* * * * *
103990268 AAAAAAAATATATAAATAATATAGTATT
1 AAAATATATACATAAATAACATAGTATG
103990296 AAAGATATATACATAAA
1 AAA-ATATATACATAAA
103990313 ATAGTATAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
26 6 0.18
27 15 0.44
28 3 0.09
29 10 0.29
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAATATATACATAAATAACATAGTATG
Found at i:103990729 original size:16 final size:16
Alignment explanation
Indices: 103990691--103990729 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
103990681 TCTCCAAAAA
*
103990691 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
103990707 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
103990723 AATAACT
1 AAAAACT
103990730 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:103990961 original size:18 final size:18
Alignment explanation
Indices: 103990938--103990991 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
103990928 GTGGTAGGTG
103990938 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
103990956 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
103990968 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
103990986 GTGGAG
1 GTGGAG
103990992 TAGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:103990967 original size:30 final size:30
Alignment explanation
Indices: 103990918--103991061 Score: 229
Period size: 30 Copynumber: 4.9 Consensus size: 30
103990908 TGCTGGTAGC
*
103990918 AGTGTAGCTAGT-G-GTAGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
103990946 AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
103990976 AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
* * *
103991006 AGTGTGGCTAATTGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
*
103991036 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTAGGTGGTGG
103991062 CAAAGGCTAG
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 11 0.10
29 1 0.01
30 96 0.89
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTAGGTGGTGGAGCA
Found at i:103996327 original size:42 final size:42
Alignment explanation
Indices: 103996281--103996373 Score: 186
Period size: 42 Copynumber: 2.2 Consensus size: 42
103996271 GAGTGTGTAC
103996281 CCAGGCTGTGGGAGTCATACGGGTAAGGACACAAGCGTGTGT
1 CCAGGCTGTGGGAGTCATACGGGTAAGGACACAAGCGTGTGT
103996323 CCAGGCTGTGGGAGTCATACGGGTAAGGACACAAGCGTGTGT
1 CCAGGCTGTGGGAGTCATACGGGTAAGGACACAAGCGTGTGT
103996365 CCAGGCTGT
1 CCAGGCTGT
103996374 CCAACTCACT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.23, C:0.20, G:0.38, T:0.19
Consensus pattern (42 bp):
CCAGGCTGTGGGAGTCATACGGGTAAGGACACAAGCGTGTGT
Found at i:104004741 original size:126 final size:126
Alignment explanation
Indices: 104004571--104005013 Score: 638
Period size: 126 Copynumber: 3.5 Consensus size: 126
104004561 TAATTAAATT
* * * * *
104004571 AGGATGCACTGTCACCAAAATTACTGAAAAAAGTTTCTATGTGGATGCTCTTTTACTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTCTTTTACTACAGTAGT
*
104004636 ATCTGAAAAAATAATTTTGAGAAGACGCTTT-TGAATAAATAGTGTCCAAAACGCTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGACG-TTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
* * * * *
104004697 AAGATGTACTGTCAGCAAAATTACTAAAAAAAGCTTCCACGTGGACGCTCTTTTGCTATAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTCTTTTACTACAGTAGT
* *
104004762 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACACTTCAAAC
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
** * * * * *
104004823 AGGATGCACTGTCAAAAAAATTATTCAAAAAAGCTTCCACGTAGACACTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTCTTTTACTACAGTAGT
*
104004888 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACG-TGTCAAGT
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCT-TCAAGC
* * *
104004949 AGGATGCATTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTCTTTTACTACAGTAGT
104005014 TCCTATTTGG
Statistics
Matches: 280, Mismatches: 35, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
125 4 0.01
126 276 0.99
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (126 bp):
AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTCTTTTACTACAGTAGT
ATCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCCAAAACGCTTCAAGC
Found at i:104007480 original size:18 final size:18
Alignment explanation
Indices: 104007454--104007498 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
104007444 GGATTGGTAA
* * *
104007454 AGGAAACATATAAGGGTT
1 AGGATACATATAAAGGCT
104007472 AGGATACATATAAAGGCT
1 AGGATACATATAAAGGCT
104007490 AGGATACAT
1 AGGATACAT
104007499 GCCTGGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAAGGCT
Found at i:104008123 original size:7 final size:7
Alignment explanation
Indices: 104008113--104008137 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
104008103 TTATATACAT
104008113 AATACTA
1 AATACTA
104008120 AATACTA
1 AATACTA
104008127 AATACTA
1 AATACTA
104008134 AATA
1 AATA
104008138 TGAAACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:104011267 original size:16 final size:16
Alignment explanation
Indices: 104011246--104011301 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
104011236 TTAATCACTT
104011246 TAATATTATATTAATA
1 TAATATTATATTAATA
* *
104011262 TAATATT-TATCAAGA
1 TAATATTATATTAATA
104011277 TAAATATTATATTAAGT-
1 T-AATATTATATTAA-TA
104011294 TAATATTA
1 TAATATTA
104011302 AACTTATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 7 0.21
16 20 0.61
17 6 0.18
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (16 bp):
TAATATTATATTAATA
Found at i:104011356 original size:67 final size:67
Alignment explanation
Indices: 104011276--104011426 Score: 157
Period size: 67 Copynumber: 2.2 Consensus size: 67
104011266 ATTTATCAAG
* * *
104011276 ATAAATATT-ATATTAAGTTAAT-A-TTAAACTTATTAAAATAATAGAAT-TCTTACAGATAAAT
1 ATAAAT-TTAATATTAAGATAATCATTTAAA--TATTAAAATAATAAAATATATTA-AGATAAAT
104011337 ATTAAA
62 ATTAAA
* * * * *
104011343 TTAAATTTAATATTAAGATAATCATTTTAATATTAAATTAATAAAATAATATTAAGCTAAGTATT
1 ATAAATTTAATATTAAGATAATCATTTAAATATTAAAATAATAAAAT-ATATTAAGATAAATATT
104011408 AAA
65 AAA
104011411 ATAAATTTAATATTAA
1 ATAAATTTAATATTAA
104011427 ACTATTAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
66 2 0.03
67 32 0.46
68 28 0.40
69 8 0.11
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.40
Consensus pattern (67 bp):
ATAAATTTAATATTAAGATAATCATTTAAATATTAAAATAATAAAATATATTAAGATAAATATTA
AA
Found at i:104011357 original size:12 final size:12
Alignment explanation
Indices: 104011332--104011444 Score: 53
Period size: 12 Copynumber: 9.8 Consensus size: 12
104011322 TTCTTACAGA
104011332 TAAATATTAAAT
1 TAAATATTAAAT
104011344 TAAAT-TTAATAT
1 TAAATATTAA-AT
* * *
104011356 TAAGATAATCATT
1 TAA-ATATTAAAT
*
104011369 TTAATATTAAAT
1 TAAATATTAAAT
104011381 T-AATA--AAA-
1 TAAATATTAAAT
**
104011389 T-AATATTAAGC
1 TAAATATTAAAT
* *
104011400 TAAGTATTAAAA
1 TAAATATTAAAT
104011412 TAAAT-TTAATAT
1 TAAATATTAA-AT
*
104011424 TAAACTATTAAAA
1 TAAA-TATTAAAT
104011437 T-AATATTA
1 TAAATATTA
104011445 TTTTTGGAAT
Statistics
Matches: 77, Mismatches: 14, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
8 5 0.06
9 3 0.04
10 2 0.03
11 18 0.23
12 35 0.45
13 8 0.10
14 6 0.08
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:104011384 original size:20 final size:18
Alignment explanation
Indices: 104011334--104011443 Score: 66
Period size: 19 Copynumber: 5.9 Consensus size: 18
104011324 CTTACAGATA
104011334 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
104011351 AATATTAAGA-TAATCATTTT
1 AATATTAA-ATTAAT-A-TTT
**
104011371 AATATTAAATTAATAAAAT
1 AATATTAAATTAAT-ATTT
**
104011390 AATATTAAGCTAAGTA-TT
1 AATATTAAATTAA-TATTT
* *
104011408 AA-AATAAATTTAATATTA
1 AATATTAAA-TTAATATTT
*
104011426 AACTATTAAAATAATATT
1 AA-TATTAAATTAATATT
104011444 ATTTTTGGAA
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
17 17 0.24
18 10 0.14
19 22 0.31
20 22 0.31
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:104012340 original size:26 final size:26
Alignment explanation
Indices: 104012304--104012356 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
104012294 ATATGATATC
104012304 CTTAATTCCTTTGAGTTAAATCCGTT
1 CTTAATTCCTTTGAGTTAAATCCGTT
104012330 CTTAATTCCTTTGAGTTAAATCCGTT
1 CTTAATTCCTTTGAGTTAAATCCGTT
104012356 C
1 C
104012357 ACTCAATCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (26 bp):
CTTAATTCCTTTGAGTTAAATCCGTT
Found at i:104014144 original size:30 final size:30
Alignment explanation
Indices: 104014103--104014160 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
104014093 GATGGGATGG
*
104014103 GAGGAGAGTAAAAGTTTTAGAAGGAAAGTGA
1 GAGGAGAGTAAAAGTATT-GAAGGAAAGTGA
*
104014134 GAGG-GAGTAAAAGTATTGAGGGAAAGT
1 GAGGAGAGTAAAAGTATTGAAGGAAAGT
104014161 AAAAGGTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.36
30 12 0.48
31 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.38, T:0.19
Consensus pattern (30 bp):
GAGGAGAGTAAAAGTATTGAAGGAAAGTGA
Found at i:104014223 original size:18 final size:18
Alignment explanation
Indices: 104014200--104014236 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
104014190 TATAGTTTGG
* *
104014200 TATTTGATTTGTTCAAAT
1 TATTTGAGTTATTCAAAT
104014218 TATTTGAGTTATTCAAAT
1 TATTTGAGTTATTCAAAT
104014236 T
1 T
104014237 TTAATATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (18 bp):
TATTTGAGTTATTCAAAT
Found at i:104017844 original size:15 final size:15
Alignment explanation
Indices: 104017824--104017853 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
104017814 AGAAACTCTC
104017824 CCACTACGACGGATT
1 CCACTACGACGGATT
*
104017839 CCACTATGACGGATT
1 CCACTACGACGGATT
104017854 TTCCTATGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (15 bp):
CCACTACGACGGATT
Found at i:104018478 original size:15 final size:15
Alignment explanation
Indices: 104018458--104018489 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
104018448 TAGACCGAAG
104018458 ATTATTTATGGATAA
1 ATTATTTATGGATAA
104018473 ATTATTTATGGATAA
1 ATTATTTATGGATAA
104018488 AT
1 AT
104018490 CTAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (15 bp):
ATTATTTATGGATAA
Found at i:104022634 original size:19 final size:20
Alignment explanation
Indices: 104022612--104022650 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
104022602 CTTAATTAAT
*
104022612 TTGATT-AATTTAATTTTTC
1 TTGATTAAAATTAATTTTTC
104022631 TTGATTAAAATTAATTTTTC
1 TTGATTAAAATTAATTTTTC
104022651 AAAAATCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTGATTAAAATTAATTTTTC
Found at i:104022790 original size:14 final size:14
Alignment explanation
Indices: 104022763--104022792 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
104022753 ATAAATTGAC
104022763 TCAATTAAATTATT
1 TCAATTAAATTATT
104022777 TCAATTAAATTATT
1 TCAATTAAATTATT
104022791 TC
1 TC
104022793 CAAAGTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (14 bp):
TCAATTAAATTATT
Found at i:104025245 original size:35 final size:35
Alignment explanation
Indices: 104025194--104025261 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
104025184 ACAATGGGAA
* *
104025194 AAGCAAAGCTAGTAGTCACGCCTATGGTAAGCTAC
1 AAGCAAAGCCAATAGTCACGCCTATGGTAAGCTAC
104025229 AAGCAAAGCCAATAGTCACGCCTATGGTAAGCT
1 AAGCAAAGCCAATAGTCACGCCTATGGTAAGCT
104025262 CATCTACATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (35 bp):
AAGCAAAGCCAATAGTCACGCCTATGGTAAGCTAC
Found at i:104038126 original size:91 final size:90
Alignment explanation
Indices: 104037972--104038147 Score: 280
Period size: 91 Copynumber: 1.9 Consensus size: 90
104037962 TTGGCCTAGC
* * *
104037972 GGTATTGGGTGTTCATTCTAAAACCCATGTCATTTGTTCAAATCATAAGAGCAATTTTATTTATT
1 GGTATTGGGTGTTCATTATAAAACCCATGTCATTTGTTCAAATCATAAGAACAATTTTATTTATG
104038037 GTGTTTAAGTTGACAATTATCTAAG
66 GTGTTTAAGTTGACAATTATCTAAG
* ** *
104038062 GGTATTGGGTGTTCATTATAAAAACTCATGTCATTTGTTCAAATGGTAGGAACAATTTTATTTAT
1 GGTATTGGGTGTTCATTAT-AAAACCCATGTCATTTGTTCAAATCATAAGAACAATTTTATTTAT
104038127 GGTGTTTAAGTTGACAATTAT
65 GGTGTTTAAGTTGACAATTAT
104038148 GTGCACCTGT
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 18 0.23
91 60 0.77
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (90 bp):
GGTATTGGGTGTTCATTATAAAACCCATGTCATTTGTTCAAATCATAAGAACAATTTTATTTATG
GTGTTTAAGTTGACAATTATCTAAG
Found at i:104047898 original size:22 final size:22
Alignment explanation
Indices: 104047871--104047913 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
104047861 ATGAAAAGTG
104047871 TATACATAATA-ATACTAAAATA
1 TATACATAATATATA-TAAAATA
104047893 TATACATAATATATATAAAAT
1 TATACATAATATATATAAAAT
104047914 GAACATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (22 bp):
TATACATAATATATATAAAATA
Found at i:104048021 original size:22 final size:23
Alignment explanation
Indices: 104047972--104048021 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
104047962 AATAAATATG
104047972 TACAT-AT-ATATTGAAAATAAA
1 TACATAATAATATTGAAAATAAA
104047993 TACATAATAATATT-AAAATCAAA
1 TACATAATAATATTGAAAAT-AAA
104048016 TA-ATAA
1 TACATAA
104048022 GTGGCAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.19
22 11 0.42
23 10 0.38
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (23 bp):
TACATAATAATATTGAAAATAAA
Found at i:104048075 original size:18 final size:17
Alignment explanation
Indices: 104048049--104048101 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 17
104048039 AATAAGTATG
*
104048049 ATAATAAATATA-ATGAT
1 ATAAAAAATATATAT-AT
104048066 ATACAAAAATAATATTATAT
1 ATA-AAAAAT-ATA-TATAT
104048086 ATAAAAAATATATATA
1 ATAAAAAATATATATA
104048102 CACGTATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
17 7 0.23
18 8 0.26
19 9 0.29
20 5 0.16
21 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAAAAAATATATATAT
Found at i:104048292 original size:21 final size:20
Alignment explanation
Indices: 104048267--104048315 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
104048257 ATAGTATAAG
104048267 AAATATATACTAATAACAT-TA
1 AAATATATAC--ATAACATATA
* *
104048288 AAATACATACATAATATATA
1 AAATATATACATAACATATA
104048308 AAATATAT
1 AAATATAT
104048316 TTATATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATATATACATAACATATA
Found at i:104048420 original size:19 final size:19
Alignment explanation
Indices: 104048396--104048434 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
104048386 TATAAATAAT
*
104048396 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
104048415 AATGATATTAGAAATATAC
1 AATGATATTAGAAATATAC
104048434 A
1 A
104048435 TAAAATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:104048683 original size:11 final size:11
Alignment explanation
Indices: 104048664--104048750 Score: 52
Period size: 12 Copynumber: 7.5 Consensus size: 11
104048654 AAGTAAAAAT
104048664 AATAATAATAA
1 AATAATAATAA
*
104048675 AATACTAAT-A
1 AATAATAATAA
* *
104048685 AATAAAAACTAT
1 AATAATAA-TAA
104048697 AATAATAATAACA
1 AATAATAAT-A-A
*
104048710 GTAATAATAGTATA
1 --AATAATAATA-A
*
104048724 AATAATATTAA
1 AATAATAATAA
104048735 AATTAA-AATAA
1 AA-TAATAATAA
104048746 AATAA
1 AATAA
104048751 CGAGAAAAGT
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
10 10 0.17
11 19 0.32
12 20 0.34
14 2 0.03
15 8 0.14
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (11 bp):
AATAATAATAA
Found at i:104048730 original size:3 final size:3
Alignment explanation
Indices: 104048622--104048718 Score: 54
Period size: 3 Copynumber: 30.7 Consensus size: 3
104048612 AAAAAACTAT
* * *
104048622 TAA TAA TGA TATA TAA TATA TATA TAA GTAT TAA GTAA AAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TA-A TAA -TAA TAA -TAA TAA TAA TAA
* * * *
104048669 TAA TAA -AA TAC TAA TAAA TAA AAA CT-A TAA TAA TAA TAA CAG TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
104048714 TAA TA
1 TAA TA
104048719 GTATAAATAA
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
2 3 0.04
3 51 0.71
4 18 0.25
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:104050322 original size:45 final size:45
Alignment explanation
Indices: 104050253--104050341 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
104050243 TCTTCTCTTC
* * * *
104050253 TGCAACTTTAGAAAGGCAAGATCTGATGTCCTCGATCAGCTCCAT
1 TGCAACTTCAGAAAGACAAAATCTGATGTCCTCAATCAGCTCCAT
* * *
104050298 TGCAACTTCAGAGAGACAAAATCTGGTGTCTTCAATCAGCTCCA
1 TGCAACTTCAGAAAGACAAAATCTGATGTCCTCAATCAGCTCCA
104050342 ATCTTTATTC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (45 bp):
TGCAACTTCAGAAAGACAAAATCTGATGTCCTCAATCAGCTCCAT
Found at i:104050551 original size:87 final size:88
Alignment explanation
Indices: 104050423--104050689 Score: 285
Period size: 87 Copynumber: 3.0 Consensus size: 88
104050413 AACAGACATT
* * * * *
104050423 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACCTCTCACAATATGA
1 AAAAACAGAAATTAAAAATACCTCAG--CGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGA
* **
104050487 GTTGGTTTTT-AAAACT-TAGTTTG-
63 GTTGGTTTTTGAAAAATATAAATTGA
* **
104050510 AAAAGCAGATTTTAAAAATACCTC-GACATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGAAATTAAAAATACCTCAG-C--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATG
*
104050573 AGTTGATTTTTGAAAAATATAAATTGA
62 AGTTGGTTTTTGAAAAATATAAATTGA
*
104050600 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
104050665 GGTTTTTGACAAACAGAAATTGA
66 GGTTTTTGAAAAATATAAATTGA
104050688 AA
1 AA
104050690 TTACCTCAAC
Statistics
Matches: 153, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
85 2 0.01
86 1 0.01
87 63 0.41
88 60 0.39
89 5 0.03
90 21 0.14
91 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (88 bp):
AAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GGTTTTTGAAAAATATAAATTGA
Found at i:104050651 original size:88 final size:87
Alignment explanation
Indices: 104050374--104050689 Score: 327
Period size: 88 Copynumber: 3.6 Consensus size: 87
104050364 GTGATCCTGA
** * * *
104050374 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAACAGAAATTGAAAAACAGAAATTGA
* * *
104050438 AAATAGCTCAGCACGTGAGCCAAG
65 AAATACCTCAG-ACGTGACCCGAG
* * ** ** * ** *
104050462 GCTCAACTCACCTCTCACAATATGAGTTGGTTTTT-AAAACTTAGTTTGAAAAGCAGATTTTAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAACAGAAATTGAAAAACAGAAATTGAA
104050526 AATACCTC-GACATGTGACCCGAG
66 AATACCTCAGAC--GTGACCCGAG
* *
104050549 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAACAGAAATTG-AAAAACAGAAATTG
104050614 AAAATACCTCAG-CGTG-CCCTGAG
64 AAAATACCTCAGACGTGACCC-GAG
* *
104050637 GCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGACAAACAGAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAACAGAAATTGAAA
104050690 TTACCTCAAC
Statistics
Matches: 189, Mismatches: 31, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
85 2 0.01
86 9 0.05
87 70 0.37
88 77 0.41
89 9 0.05
90 21 0.11
91 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAACAGAAATTGAAAAACAGAAATTGAA
AATACCTCAGACGTGACCCGAG
Found at i:104050876 original size:76 final size:75
Alignment explanation
Indices: 104050602--104050999 Score: 406
Period size: 75 Copynumber: 5.2 Consensus size: 75
104050592 TAAATTGAAA
*
104050602 AAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* ***
104050665 GGTTTTTGAC
66 GATTTTTTTT
* * ** *
104050675 AAACAGAAATTGAAATTACCTCAACGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATACGAGTT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
104050740 GGCCTTTTTTTTT
66 -G--ATTTTTTTT
* * * *
104050753 AAAAAAAAATAGGAATTGAAAATACCTCAGCTTGTGACCTAAGGCTCAACTCACCTCTCGCAATA
1 ------AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
104050818 TGAGTTGATTTTTTTTT
60 TGAGTTGA-TTTTTTTT
* * * * *
104050835 AAACAGGAATTGAAAATGCCTCAGCGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACG-GTT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* ***
104050899 GACTTTTAAA
66 GATTTTTTTT
* * * * *
104050909 AAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTTTCGCAATATGAATT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
104050974 GATTTTTTTG
66 GATTTTTTTT
*
104050984 AAACATAAATTGAAAA
1 AAACAGAAATTGAAAA
104051000 ACATAAATTA
Statistics
Matches: 266, Mismatches: 46, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
73 23 0.09
74 58 0.22
75 60 0.23
76 55 0.21
78 5 0.02
82 8 0.03
83 1 0.00
84 56 0.21
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (75 bp):
AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTT
Found at i:104050923 original size:150 final size:152
Alignment explanation
Indices: 104050599--104050999 Score: 506
Period size: 150 Copynumber: 2.6 Consensus size: 152
104050589 ATATAAATTG
* * *
104050599 AAAAAACAGAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAAATAGGAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** * * *
104050663 TTGGTTTTTGACAAACAGAAATTGAAATTACCTCAACGTGTGACCTGAGGCTCAACTTGCCTCTC
66 TTGATTTTTTTCAAACAGAAATTGAAAATACCTCAACGCGTGACCTGAGGCTCAACTCGCCTCTC
*
104050728 GCAATACGAGTTGGCCTTTTTTTTTAAA
131 GCAATACGAGTTGGAC----TTTTT--A
*
104050756 AAAAAATAGGAATTGAAAATACCTCAGCTTGTGACCTAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAAATAGGAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
104050821 GTTGATTTTTTTTTAAACAGGAATTGAAAATGCCTCAGCGCGTGACCTGAGGCTCAACTCGCCTC
65 GTTGA-TTTTTTTCAAACAGAAATTGAAAATACCTCAACGCGTGACCTGAGGCTCAACTCGCCTC
104050886 TCGCAATACG-GTT-GAC-TTTT-
129 TCGCAATACGAGTTGGACTTTTTA
* *
104050906 AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTTTCGCAATATGA
1 AAAAAATAGGAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
104050971 ATTGATTTTTTTGAAACATAAATTGAAAA
65 GTTGATTTTTTTCAAACAGAAATTGAAAA
104051000 ACATAAATTA
Statistics
Matches: 218, Mismatches: 23, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
149 21 0.10
150 65 0.30
153 4 0.02
157 26 0.12
158 2 0.01
159 40 0.18
160 60 0.28
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (152 bp):
AAAAAATAGGAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTCAAACAGAAATTGAAAATACCTCAACGCGTGACCTGAGGCTCAACTCGCCTCTC
GCAATACGAGTTGGACTTTTTA
Found at i:104050944 original size:74 final size:76
Alignment explanation
Indices: 104050599--104050981 Score: 380
Period size: 76 Copynumber: 5.0 Consensus size: 76
104050589 ATATAAATTG
* * * *
104050599 AAAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
*
104050662 GTTGGT-TTTT
66 GTTGATCTTTT
* * * * * * **
104050672 GACAAACAGAAATTGAAATTACCTCAACGTGTGACCTGAGGCTCAACTTGCCTCTCGCAATACGA
1 AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
* *
104050737 GTTGGCCTTTTTTTTT
66 GTT-G----ATCTTTT
* *
104050753 AAAAAAAAATAGGAATTGAAAATACCTCAGCTTGTGACCTAAGGCTCAACTCACCTCTCGCAATA
1 ---AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* *
104050818 TGAGTTGATTTTTT
63 CGAGTTGATCTTTT
*** * * * *
104050832 TTTAAACAGGAATTGAAAATGCCTCAGCGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACG-
1 AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
104050896 GTTGA-CTTTT
66 GTTGATCTTTT
* * *
104050906 AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTTTCGCAATATGA
1 AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
* *
104050971 ATTGATTTTTT
66 GTTGATCTTTT
104050982 TGAAACATAA
Statistics
Matches: 253, Mismatches: 44, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
73 24 0.09
74 58 0.23
75 43 0.17
76 59 0.23
79 6 0.02
80 1 0.00
81 4 0.02
83 1 0.00
84 57 0.23
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (76 bp):
AAAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
GTTGATCTTTT
Found at i:104051058 original size:89 final size:89
Alignment explanation
Indices: 104050916--104051089 Score: 233
Period size: 89 Copynumber: 2.0 Consensus size: 89
104050906 AAAAAATAGG
* * * *
104050916 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTTTCGCAATATGAATTGATTTTT
1 AATTGAAAATACCTCAACGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAATTGATTTTT
*** *
104050981 TTGAAACATAAATTGAAAAACATA
66 GACAAACAGAAATTGAAAAACATA
* * *
104051005 AATT-AAAATTACCTCAACGTGTGAGCTGAGGCTCAACTCACCTCTCACAATATGAGTTTATTTT
1 AATTGAAAA-TACCTCAACGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAATTGATTTT
104051069 TGACAAACAGAAATTGAAAAA
65 TGACAAACAGAAATTGAAAAA
104051090 AAAGAATTTG
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 4 0.05
89 69 0.95
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (89 bp):
AATTGAAAATACCTCAACGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAATTGATTTTT
GACAAACAGAAATTGAAAAACATA
Found at i:104059366 original size:38 final size:38
Alignment explanation
Indices: 104059314--104059400 Score: 160
Period size: 38 Copynumber: 2.3 Consensus size: 38
104059304 GAATAAATGA
104059314 ATGAATG-A-ATGAATAAATGTCAAGTGAATGTTAGTC
1 ATGAATGTATATGAATAAATGTCAAGTGAATGTTAGTC
104059350 ATGAATGTATATGAATAAATGTCAAGTGAATGTTAGTC
1 ATGAATGTATATGAATAAATGTCAAGTGAATGTTAGTC
104059388 ATGAATGTATATG
1 ATGAATGTATATG
104059401 CAAGAATTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 7 0.14
37 1 0.02
38 41 0.84
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (38 bp):
ATGAATGTATATGAATAAATGTCAAGTGAATGTTAGTC
Found at i:104063195 original size:22 final size:21
Alignment explanation
Indices: 104063168--104063217 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
104063158 ATGAAAAGTG
104063168 TATACATAATA-ATACTAAAAT
1 TATACATAATATATA-TAAAAT
104063189 ATATACATAATATATATAAAAT
1 -TATACATAATATATATAAAAT
104063211 TA-ACATA
1 TATACATA
104063218 TACAATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.19
21 2 0.07
22 17 0.63
23 3 0.11
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (21 bp):
TATACATAATATATATAAAAT
Found at i:104063218 original size:26 final size:28
Alignment explanation
Indices: 104063189--104063276 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
104063179 ATACTAAAAT
104063189 ATATAC-ATA-ATATATATAAA-ATTAAC
1 ATATACAATATATAT-TATAAATATTAAC
*
104063215 ATATACAATATATATTATAAATATTAATA
1 ATATACAATATATATTATAAATATTAA-C
* *
104063244 ACATA-AAAATATATTAATAAATATGT-AC
1 ATATACAATATATATT-ATAAATAT-TAAC
104063272 ATATA
1 ATATA
104063277 TATTGAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
26 6 0.12
27 9 0.18
28 22 0.43
29 13 0.25
30 1 0.02
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (28 bp):
ATATACAATATATATTATAAATATTAAC
Found at i:104063713 original size:19 final size:19
Alignment explanation
Indices: 104063689--104063727 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
104063679 TATAAATAAT
*
104063689 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
104063708 AATGATATTAGAAATATAC
1 AATGATATTAGAAATATAC
104063727 A
1 A
104063728 TAAAATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:104063783 original size:22 final size:23
Alignment explanation
Indices: 104063757--104063802 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
104063747 AAGAACTAAT
104063757 AATAT-TAAAACATATACATAAC
1 AATATGTAAAACATATACATAAC
***
104063779 AATATGTAAATTGTATACATAAC
1 AATATGTAAAACATATACATAAC
104063802 A
1 A
104063803 TAGTTATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.30
Consensus pattern (23 bp):
AATATGTAAAACATATACATAAC
Found at i:104064671 original size:36 final size:33
Alignment explanation
Indices: 104064604--104064672 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 33
104064594 TGGAAAAAGG
*
104064604 TATTTTTTTTATTTTTTTTACGTTTTAAAATAT
1 TATTTTTTTTATTTTATTTACGTTTTAAAATAT
*
104064637 TATTTTTTTTATTTATATTTATGTATTTATAAATAT
1 TATTTTTTTTATTT-TATTTACGT-TTTA-AAATAT
104064673 GGAAGGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
33 14 0.45
34 7 0.23
35 4 0.13
36 6 0.19
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (33 bp):
TATTTTTTTTATTTTATTTACGTTTTAAAATAT
Found at i:104065584 original size:14 final size:14
Alignment explanation
Indices: 104065565--104065592 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
104065555 ACAAATATAG
104065565 GTATTATAGAATAT
1 GTATTATAGAATAT
104065579 GTATTATAGAATAT
1 GTATTATAGAATAT
104065593 AAAAATAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (14 bp):
GTATTATAGAATAT
Found at i:104076929 original size:23 final size:23
Alignment explanation
Indices: 104076902--104076947 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
104076892 GATGATTGTT
*
104076902 CTTGGATGAGAGTTGTTCCTAAA
1 CTTGGATAAGAGTTGTTCCTAAA
104076925 CTTGGATAAGAGTTGTTCCTAAA
1 CTTGGATAAGAGTTGTTCCTAAA
104076948 TAAGAGTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (23 bp):
CTTGGATAAGAGTTGTTCCTAAA
Found at i:104077905 original size:25 final size:24
Alignment explanation
Indices: 104077855--104077905 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
104077845 AAAATTTTGA
*
104077855 AATATATATTTGAAATATTTTATT
1 AATATATATTTGAAATACTTTATT
104077879 AATATATATTTTGAAATTACTTT-TT
1 AATATATA-TTTGAAA-TACTTTATT
104077904 AA
1 AA
104077906 AATTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 11 0.46
26 5 0.21
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
AATATATATTTGAAATACTTTATT
Found at i:104077924 original size:22 final size:21
Alignment explanation
Indices: 104077886--104077940 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
104077876 ATTAATATAT
*
104077886 ATTTTGAA-ATTACTTTTTAAA
1 ATTTTAAATATTACTTTTT-AA
* *
104077907 ATTTTAAATATTATTTTTTTA
1 ATTTTAAATATTACTTTTTAA
104077928 ATATTTAAATATT
1 AT-TTTAAATATT
104077941 TTAAACTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTAAATATTACTTTTTAA
Found at i:104078256 original size:21 final size:21
Alignment explanation
Indices: 104078222--104078262 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
104078212 TTTTTCTTGT
*
104078222 TTTATTTTGTTTATTTATTTA
1 TTTATTTTGTTTATTAATTTA
104078243 TTTATTTT-TGTTATTAATTT
1 TTTATTTTGT-TTATTAATTT
104078263 TAAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.76
Consensus pattern (21 bp):
TTTATTTTGTTTATTAATTTA
Found at i:104078285 original size:23 final size:23
Alignment explanation
Indices: 104078259--104078386 Score: 56
Period size: 23 Copynumber: 5.9 Consensus size: 23
104078249 TTTGTTATTA
*
104078259 ATTTTAAAAAATTTAAAATGTAT
1 ATTTTAAAAAATTTAAAATATAT
* *** *
104078282 ATTTGAAATGTTTTATAATATAT
1 ATTTTAAAAAATTTAAAATATAT
*
104078305 ATTTT---AAATTTTAAAT-TAT
1 ATTTTAAAAAATTTAAAATATAT
** *
104078324 -TTTTAAAATTTTTAATAT-TAT
1 ATTTTAAAAAATTTAAAATATAT
* * *
104078345 TTTTTTAAACA-TT-AAATATAT
1 ATTTTAAAAAATTTAAAATATAT
* * *
104078366 ATTTTTAATAATATAAAATAT
1 ATTTTAAAAAATTTAAAATAT
104078387 TTAAATATTT
Statistics
Matches: 74, Mismatches: 24, Indels: 14
0.66 0.21 0.12
Matches are distributed among these distances:
18 4 0.05
19 3 0.04
20 9 0.12
21 23 0.31
22 8 0.11
23 27 0.36
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (23 bp):
ATTTTAAAAAATTTAAAATATAT
Found at i:104078316 original size:21 final size:20
Alignment explanation
Indices: 104078267--104078370 Score: 77
Period size: 23 Copynumber: 5.0 Consensus size: 20
104078257 TAATTTTAAA
* * *
104078267 AAATTTAAAATGTATATTTG
1 AAATTTTAAATATATATTTT
104078287 AAATGTTTTATAATATATATTTT
1 AAA--TTTTA-AATATATATTTT
104078310 AAATTTTAAAT-TAT-TTTT
1 AAATTTTAAATATATATTTT
* *
104078328 AAAATTTTTAATATTATTTTTTT
1 -AAATTTTAAATA-TA-TATTTT
**
104078351 AAACATTAAATATATATTTT
1 AAATTTTAAATATATATTTT
104078371 TAATAATATA
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
18 4 0.06
19 13 0.19
20 11 0.16
21 9 0.13
22 14 0.21
23 17 0.25
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (20 bp):
AAATTTTAAATATATATTTT
Found at i:104078371 original size:21 final size:21
Alignment explanation
Indices: 104078292--104078373 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
104078282 ATTTGAAATG
104078292 TTTTATAATATATA-TTTTAAA
1 TTTTA-AATATATATTTTTAAA
*
104078313 TTTTAAAT-TAT-TTTTAAAA
1 TTTTAAATATATATTTTTAAA
* *
104078332 TTTTTAATATTATTTTTTTAAA
1 TTTTAAATA-TATATTTTTAAA
**
104078354 CATTAAATATATATTTTTAA
1 TTTTAAATATATATTTTTAA
104078374 TAATATAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
19 16 0.32
20 3 0.06
21 18 0.36
22 13 0.26
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAAATATATATTTTTAAA
Found at i:104078743 original size:11 final size:12
Alignment explanation
Indices: 104078697--104078760 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 12
104078687 TTTAACTTTT
*
104078697 AAATAGAATTTA
1 AAATATAATTTA
* *
104078709 AAAGATAGTTT-
1 AAATATAATTTA
* *
104078720 GAATAT-CTTTA
1 AAATATAATTTA
104078731 AAA-ATAATTTA
1 AAATATAATTTA
104078742 AAATTATAATTTA
1 AAA-TATAATTTA
104078755 AAATAT
1 AAATAT
104078761 TATAAAACAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
10 5 0.12
11 13 0.32
12 11 0.28
13 11 0.28
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (12 bp):
AAATATAATTTA
Found at i:104078765 original size:15 final size:13
Alignment explanation
Indices: 104078734--104078758 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104078724 ATCTTTAAAA
104078734 ATAATTTAAAATT
1 ATAATTTAAAATT
104078747 ATAATTTAAAAT
1 ATAATTTAAAAT
104078759 ATTATAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAATTTAAAATT
Found at i:104078954 original size:16 final size:17
Alignment explanation
Indices: 104078926--104078958 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
104078916 TTTTTAAAGT
104078926 TAATAATAATAAATAAA
1 TAATAATAATAAATAAA
104078943 TAATAA-AATAAATAAA
1 TAATAATAATAAATAAA
104078959 GAGAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
TAATAATAATAAATAAA
Found at i:104078986 original size:8 final size:8
Alignment explanation
Indices: 104078975--104079008 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
104078965 AAGACAAAGG
104078975 AAAAGTAA
1 AAAAGTAA
*
104078983 AAAAGTTA
1 AAAAGTAA
104078991 AAAAGTAA
1 AAAAGTAA
104078999 AAAA-TAA
1 AAAAGTAA
104079006 AAA
1 AAA
104079009 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (8 bp):
AAAAGTAA
Found at i:104078999 original size:7 final size:7
Alignment explanation
Indices: 104078975--104079021 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 7
104078965 AAGACAAAGG
104078975 AAAAGTAA
1 AAAAGT-A
104078983 AAAAGTTA
1 AAAAG-TA
104078991 AAAAGTA
1 AAAAGTA
*
104078998 AAAAATA
1 AAAAGTA
104079005 AAAA-TA
1 AAAAGTA
104079011 AAAA-TA
1 AAAAGTA
104079017 AAAAG
1 AAAAG
104079022 ATTGACATGG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
6 12 0.33
7 12 0.33
8 11 0.31
9 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.15
Consensus pattern (7 bp):
AAAAGTA
Found at i:104082219 original size:42 final size:42
Alignment explanation
Indices: 104082160--104082239 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
104082150 GTTTTCCTAA
104082160 TTTTCCAGTGTTTGTTTGCTTGAAAATAACTTACATTTGTAG
1 TTTTCCAGTGTTTGTTTGCTTGAAAATAACTTACATTTGTAG
*
104082202 TTTTCTAGTGTTTGTTTGCTTGAAAATAACTTACATTT
1 TTTTCCAGTGTTTGTTTGCTTGAAAATAACTTACATTT
104082240 ATAAAACGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.50
Consensus pattern (42 bp):
TTTTCCAGTGTTTGTTTGCTTGAAAATAACTTACATTTGTAG
Found at i:104082629 original size:23 final size:23
Alignment explanation
Indices: 104082599--104082645 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
104082589 AAAAGGAGAG
104082599 AAAGAAATAAACAGACATAATTT
1 AAAGAAATAAACAGACATAATTT
*
104082622 AAAGAAATAAACAGATATAATTT
1 AAAGAAATAAACAGACATAATTT
104082645 A
1 A
104082646 GTCGGATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.62, C:0.06, G:0.09, T:0.23
Consensus pattern (23 bp):
AAAGAAATAAACAGACATAATTT
Found at i:104082919 original size:19 final size:20
Alignment explanation
Indices: 104082894--104082938 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
104082884 TATCCAAACA
104082894 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
104082914 -CAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
104082933 CCAGAA
1 CCAGAA
104082939 TTATTTTCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:104083325 original size:28 final size:27
Alignment explanation
Indices: 104083293--104083346 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
104083283 ATATGAACCG
104083293 ATTATATAACTA-ATAAACCAAGTATAAA
1 ATTATATAACTACATAAA-CAA-TATAAA
*
104083321 ATTATTTAACTACATAAACAATATAA
1 ATTATATAACTACATAAACAATATAA
104083347 TTGTTCTGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 5 0.21
28 14 0.58
29 5 0.21
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.31
Consensus pattern (27 bp):
ATTATATAACTACATAAACAATATAAA
Found at i:104086224 original size:17 final size:18
Alignment explanation
Indices: 104086204--104086237 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
104086194 TTCCCCTTGG
104086204 ATTAATTATT-AATTATT
1 ATTAATTATTAAATTATT
104086221 ATTAATTATTAAATTAT
1 ATTAATTATTAAATTAT
104086238 AGAGTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATTATTAAATTATT
Found at i:104086283 original size:24 final size:22
Alignment explanation
Indices: 104086248--104086291 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 22
104086238 AGAGTAAATA
104086248 TTTTAATATTAAAGTATTTTATAC
1 TTTTAATATTAAA--ATTTTATAC
104086272 TTTTAA-ATTTAAAATTTTAT
1 TTTTAATA-TTAAAATTTTAT
104086292 TACCTCTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 11 0.58
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTAATATTAAAATTTTATAC
Done.