Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 347 of 410
Found at i:107131717 original size:42 final size:42
Alignment explanation
Indices: 107131503--107131706 Score: 167
Period size: 42 Copynumber: 4.9 Consensus size: 42
107131493 TACTTATGCT
* * *
107131503 AGTATATTTACTTTGGCTT-ATTTGATGATGCACTTACGTGCC
1 AGTATATTTGCTTTGG-TTCATCTGATAATGCACTTACGTGCC
* * * * *
107131545 AGTATGTTTGCTTTGGTTTATCTAATAATGCATTTACGTACC
1 AGTATATTTGCTTTGGTTCATCTGATAATGCACTTACGTGCC
* *** * *
107131587 AGTATAATTGCTCCAGTTCATTTGATAATGCACTTACATGCC
1 AGTATATTTGCTTTGGTTCATCTGATAATGCACTTACGTGCC
* ** ** * ** *
107131629 AATATATTTGCTTCAGTTCATCCAATTATGCACTTAAATGCT
1 AGTATATTTGCTTTGGTTCATCTGATAATGCACTTACGTGCC
* *
107131671 AGTATATTTGTTTTGGTTCATCTGATGATGCACTTA
1 AGTATATTTGCTTTGGTTCATCTGATAATGCACTTA
107131707 TGTACTAGTA
Statistics
Matches: 127, Mismatches: 34, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
41 2 0.02
42 125 0.98
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42
Consensus pattern (42 bp):
AGTATATTTGCTTTGGTTCATCTGATAATGCACTTACGTGCC
Found at i:107134080 original size:34 final size:34
Alignment explanation
Indices: 107134042--107134109 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
107134032 ATGTTAATTC
107134042 CATTAAATTAAATAAAAATATAGTTAGTAGTCCA
1 CATTAAATTAAATAAAAATATAGTTAGTAGTCCA
107134076 CATTAAATTAAATAAAAATATAGTTAGTAGTCCA
1 CATTAAATTAAATAAAAATATAGTTAGTAGTCCA
107134110 TGTTTTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (34 bp):
CATTAAATTAAATAAAAATATAGTTAGTAGTCCA
Found at i:107134552 original size:16 final size:16
Alignment explanation
Indices: 107134531--107134562 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
107134521 ATATACAAAA
107134531 ATATATATGTGTTTAT
1 ATATATATGTGTTTAT
*
107134547 ATATATGTGTGTTTAT
1 ATATATATGTGTTTAT
107134563 TTGAAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (16 bp):
ATATATATGTGTTTAT
Found at i:107135021 original size:24 final size:24
Alignment explanation
Indices: 107134989--107135292 Score: 239
Period size: 24 Copynumber: 12.7 Consensus size: 24
107134979 GAAATGACTT
* *
107134989 TGGCACTATGTATGCTAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
107135013 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
*
107135037 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
107135061 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
*
107135086 -GGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
107135109 TGGCACTATATGCGCGGATTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
107135133 TGGCACTATGTGTGC-AGATTTGAA
1 TGGCACTATGTGTGCGA-ATTTGAA
* * * *
107135157 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
*
107135182 -GGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
107135205 TGGCATTATATGTGCGGATTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
*
107135229 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
107135253 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
107135278 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
107135293 GGTTAACATG
Statistics
Matches: 218, Mismatches: 46, Indels: 32
0.74 0.16 0.11
Matches are distributed among these distances:
22 2 0.01
23 2 0.01
24 202 0.93
25 9 0.04
26 3 0.01
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:107135293 original size:48 final size:48
Alignment explanation
Indices: 107134990--107135293 Score: 310
Period size: 48 Copynumber: 6.3 Consensus size: 48
107134980 AAATGACTTT
* ** * * * ** *
107134990 GGCACTATGTATGCTAATTTGAATGGCACTATGTGTGCGAATTTGTAT
1 GGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTAA
*
107135038 GGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAA
1 GGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTAA
* * *** * *
107135086 GGCACTATGTGTGCGAATTTGTATGGCACTATATGCGCG-GATTTA-TAT
1 GGCACTATGTGTGCGGATTTGAATGGCA--ATATGTATGTGAATTACTAA
* *
107135134 GGCACTATGTGTGCAGATTTGAATGTCAATATGTATGTGAATTACTAA
1 GGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTAA
* * ** * *
107135182 GGCACTATGTGTGCGAATTTGTATGGCATTATATGTGCG-GATTTA-TAT
1 GGCACTATGTGTGCGGATTTGAATGGCA--ATATGTATGTGAATTACTAA
*
107135230 GGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTAA
1 GGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTAA
107135278 GGCACTATGTGTGCGG
1 GGCACTATGTGTGCGG
107135294 GTTAACATGG
Statistics
Matches: 206, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
46 13 0.06
47 10 0.05
48 160 0.78
49 10 0.05
50 13 0.06
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (48 bp):
GGCACTATGTGTGCGGATTTGAATGGCAATATGTATGTGAATTACTAA
Found at i:107135305 original size:96 final size:96
Alignment explanation
Indices: 107134990--107135292 Score: 525
Period size: 96 Copynumber: 3.2 Consensus size: 96
107134980 AAATGACTTT
* * * * * *
107134990 GGCACTATGTATGCTAATTTGAATGGCACTATGTGTGCGAATTTGTATGGCACTATGTGTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
107135055 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
* *
107135086 GGCACTATGTGTGCGAATTTGTATGGCACTATATGCGCGGATTTATATGGCACTATGTGTGCAGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
107135151 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
*
107135182 GGCACTATGTGTGCGAATTTGTATGGCATTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
107135247 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
107135278 GGCACTATGTGTGCG
1 GGCACTATGTGTGCG
107135293 GGTTAACATG
Statistics
Matches: 196, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 196 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (96 bp):
GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
TTTGAATGTCAATATGTATGTGAATTACTAA
Found at i:107139850 original size:32 final size:32
Alignment explanation
Indices: 107139809--107139872 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
107139799 CCCTTGATCC
107139809 GGGAATGTTAGAAATAAATACTTTTTTACACT
1 GGGAATGTTAGAAATAAATACTTTTTTACACT
107139841 GGGAATGTTAGAAATAAATACTTTTTTACACT
1 GGGAATGTTAGAAATAAATACTTTTTTACACT
107139873 ATTCTCCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (32 bp):
GGGAATGTTAGAAATAAATACTTTTTTACACT
Found at i:107143531 original size:47 final size:47
Alignment explanation
Indices: 107143462--107143552 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
107143452 ATATGTCGCG
* * *
107143462 ACACCCTCAGTTTGTTTCACAACATTGAAGGTAGTTTTGAGTTTGCA
1 ACACCCTCAGTTTGTGTCACAACATCGAAGGTAGTCTTGAGTTTGCA
107143509 ACACCCTCAGTTTGTGTCACAACATCGAAGGTAGTCTTGAGTTT
1 ACACCCTCAGTTTGTGTCACAACATCGAAGGTAGTCTTGAGTTT
107143553 TCTATGTTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (47 bp):
ACACCCTCAGTTTGTGTCACAACATCGAAGGTAGTCTTGAGTTTGCA
Found at i:107144650 original size:9 final size:9
Alignment explanation
Indices: 107144636--107144676 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
107144626 ATAAGTATAA
107144636 AATTAACCG
1 AATTAACCG
*
107144645 AATTAATCG
1 AATTAACCG
107144654 AATT-ACCTG
1 AATTAACC-G
107144663 AATTAACCG
1 AATTAACCG
107144672 AATTA
1 AATTA
107144677 TTTGTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 2 0.07
9 23 0.82
10 3 0.11
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:107144718 original size:13 final size:12
Alignment explanation
Indices: 107144696--107144739 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
107144686 AATTATATGT
*
107144696 TTTTTATTTTTA
1 TTTTTAGTTTTA
107144708 TTTTTAGTTTTA
1 TTTTTAGTTTTA
*
107144720 GATTTTAGATTTTA
1 -TTTTTAG-TTTTA
107144734 TTTTTA
1 TTTTTA
107144740 TTTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.41
13 11 0.41
14 5 0.19
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (12 bp):
TTTTTAGTTTTA
Found at i:107144783 original size:13 final size:13
Alignment explanation
Indices: 107144767--107144791 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107144757 AATTTTTATG
107144767 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
107144780 ATTGGGTTGGGT
1 ATTGGGTTGGGT
107144792 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:107144791 original size:18 final size:18
Alignment explanation
Indices: 107144768--107144805 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
107144758 ATTTTTATGA
107144768 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
107144786 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
107144804 TT
1 TT
107144806 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:107145392 original size:18 final size:20
Alignment explanation
Indices: 107145359--107145396 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
107145349 ATGCATGATA
107145359 AGTAATTCTTTCATGTTTTT
1 AGTAATTCTTTCATGTTTTT
107145379 AGTAATT-TTT-ATGTTTTT
1 AGTAATTCTTTCATGTTTTT
107145397 GATATCGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 3 0.17
20 7 0.39
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (20 bp):
AGTAATTCTTTCATGTTTTT
Found at i:107147666 original size:33 final size:33
Alignment explanation
Indices: 107147629--107147715 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 33
107147619 TACACTCTGT
**
107147629 TTGGTGTGTTGGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
** * *
107147662 TTGGTGTGTTGGAGGGATTGGCTCGTGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
107147695 TCTGGTGTGTTTGGTTGGATT
1 T-TGGTGTG-TTGGTTGGATT
107147716 GGTGATGTAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 28 0.64
34 7 0.16
35 9 0.20
ACGTcount: A:0.11, C:0.07, G:0.39, T:0.43
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
Found at i:107148678 original size:15 final size:16
Alignment explanation
Indices: 107148660--107148690 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
107148650 TTAGTGTCTT
107148660 TTTGAT-ATGTGTTAA
1 TTTGATAATGTGTTAA
107148675 TTTGATAATGTGTTAA
1 TTTGATAATGTGTTAA
107148691 AACATGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (16 bp):
TTTGATAATGTGTTAA
Found at i:107150627 original size:6 final size:6
Alignment explanation
Indices: 107150616--107150706 Score: 87
Period size: 6 Copynumber: 14.8 Consensus size: 6
107150606 TATCATAACT
* *
107150616 AGAATC AGAATC AGAATT AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
107150665 AGAATC AGAATC AGTATC AGGTAA-C TGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
107150707 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
5 3 0.04
6 59 0.86
7 5 0.07
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:107150658 original size:37 final size:37
Alignment explanation
Indices: 107150611--107150706 Score: 138
Period size: 37 Copynumber: 2.6 Consensus size: 37
107150601 AACATTATCA
*
107150611 TAACTAGAATCAGAATCAGAATTAGAATCAGAATCAGG
1 TAAC-AGAATCAGAATCAGAATCAGAATCAGAATCAGG
* *
107150649 TGACAGAATCAGAATCAGAATCAGAATCAGTATCAGG
1 TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
* *
107150686 TAACTGAATCAAAATCAGAAT
1 TAACAGAATCAGAATCAGAAT
107150707 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 49 0.94
38 3 0.06
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.21
Consensus pattern (37 bp):
TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
Found at i:107151120 original size:27 final size:27
Alignment explanation
Indices: 107151090--107151502 Score: 437
Period size: 27 Copynumber: 15.3 Consensus size: 27
107151080 GGGGCAAAAT
* * *
107151090 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
107151117 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
107151144 GGT-ATTACTACCCTACAAGGGTATTTC
1 GGTAATT-TTACCCTACAGGGGTATTTC
* *
107151171 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
107151198 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
107151225 GGT-ATTTCTA-CCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
107151251 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
107151278 GGTAATTTTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
107151305 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
107151332 GAT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
107151359 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
107151386 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
107151413 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
107151440 GGT-ATTTCAACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
107151467 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
**
107151494 AATAATTTT
1 GGTAATTTT
107151503 GTAAATCAAG
Statistics
Matches: 334, Mismatches: 43, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
26 37 0.11
27 284 0.85
28 13 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:107151136 original size:54 final size:54
Alignment explanation
Indices: 107151094--107151493 Score: 516
Period size: 54 Copynumber: 7.4 Consensus size: 54
107151084 CAAAATGGTA
* *
107151094 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * * *
107151147 ATTACTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * * *
107151201 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTA-CCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* **
107151254 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTATAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * * * *
107151308 AATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTATAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * *
107151362 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* * * * * * *
107151416 AATTCTACCCTACAGGGGTATTTCGGTATTTCAACCCTACAAGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
* *
107151470 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
107151494 AATAATTTTG
Statistics
Matches: 302, Mismatches: 43, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
53 51 0.17
54 251 0.83
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
Found at i:107151227 original size:81 final size:81
Alignment explanation
Indices: 107151092--107151500 Score: 547
Period size: 81 Copynumber: 5.1 Consensus size: 81
107151082 GGCAAAATGG
* * * * *
107151092 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGT-ATTACTACC
1 TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATT-CTACC
*
107151156 CTACAAGGGTATTTCGA
65 CTACAGGGGTATTTCGA
* * *
107151173 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTA-CC
1 TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
* *
107151237 TACAAGGGTATTTCGG
66 TACAGGGGTATTTCGA
* * **
107151253 TATTTCTACCCTACAAGGGTATTTCGGTAATTT-TACCCTATAGGGGTATTTTAGTAATTCTACC
1 TAATTCTACCCTACAAGGGTATTTCGGT-ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACC
107151317 CTACAGGGGTATTTCGA
65 CTACAGGGGTATTTCGA
* * * *
107151334 TATTTCTACCCTATAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
107151399 TACAGGGGTATTTC-A
66 TACAGGGGTATTTCGA
* * * *
107151414 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCAACCCTACAAGGGTATTTCGATAATTCTACC
1 -TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACC
*
107151479 CTACAGGGGTATTTCAA
65 CTACAGGGGTATTTCGA
107151496 TAATT
1 TAATT
107151501 TTGTAAATCA
Statistics
Matches: 292, Mismatches: 30, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
80 72 0.25
81 217 0.74
82 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
TACAGGGGTATTTCGA
Found at i:107151570 original size:81 final size:81
Alignment explanation
Indices: 107151485--107151716 Score: 213
Period size: 81 Copynumber: 2.9 Consensus size: 81
107151475 TACCCTACAG
* ** * *
107151485 GGGTATTTCAATAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTA-AATC-GGGGGTACTTT
1 GGGTATTTCAGTAATTTTACAAATCAAGGGTAAAACGGTAATT-T-TACAAACTGAGGGTACTTT
*
107151548 GGTAATTTTACAAGTCAA
64 GGTAATTTTACAAATCAA
* * ***** *
107151566 GGGTATTTTAGTAATTTTACAAATCGAGGGTATTTTTGTAATTTTACAAACTGAGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAATCAAGGGTAAAACGGTAATTTTACAAACTGAGGGTACTTTGG
*
107151631 TAATTTTACAAATCGA
66 TAATTTTACAAATCAA
* * ***
107151647 GGGTATTTCAGTAATTTTAC-AATCGATGGTATTTCGGTAATTTTACAAA-TCGAGGGTA-TTTG
1 GGGTATTTCAGTAATTTTACAAATCAAGGGTAAAACGGTAATTTTACAAACT-GAGGGTACTTT-
107151709 GGTAATTT
64 GGTAATTT
107151717 GGCAAACTAA
Statistics
Matches: 128, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 6 0.05
80 45 0.35
81 77 0.60
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAAGGGTAAAACGGTAATTTTACAAACTGAGGGTACTTTGG
TAATTTTACAAATCAA
Found at i:107151722 original size:27 final size:27
Alignment explanation
Indices: 107151532--107151716 Score: 248
Period size: 27 Copynumber: 6.9 Consensus size: 27
107151522 GTAATTCTGT
* *
107151532 AAATCGGGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
* * *
107151559 AAGTCAAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
*
107151586 AAATCGAGGGTATTTTTGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
107151613 AAA-CTGAGGGTATTTTGGTAATTTTAC
1 AAATC-GAGGGTATTTTGGTAATTTTAC
**
107151640 AAATCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
* *
107151667 -AATCGATGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
*
107151693 AAATCGAGGGTATTTGGGTAATTT
1 AAATCGAGGGTATTTTGGTAATTT
107151717 GGCAAACTAA
Statistics
Matches: 140, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.18
27 114 0.81
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
AAATCGAGGGTATTTTGGTAATTTTAC
Found at i:107163084 original size:24 final size:24
Alignment explanation
Indices: 107163069--107163115 Score: 73
Period size: 21 Copynumber: 2.1 Consensus size: 24
107163059 AAGTATATAG
107163069 TATAATAATATATTAATATAATAA
1 TATAATAATATATTAATATAATAA
107163093 TATAAT-A-ATA-TAATATAATAA
1 TATAATAATATATTAATATAATAA
107163114 TA
1 TA
107163116 CATAAAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 13 0.57
22 3 0.13
23 1 0.04
24 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TATAATAATATATTAATATAATAA
Found at i:107163089 original size:13 final size:13
Alignment explanation
Indices: 107163073--107163115 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
107163063 ATATAGTATA
107163073 ATAATATATTAAT
1 ATAATATATTAAT
107163086 ATAATAATATAATAAT
1 ATAAT-ATAT--TAAT
*
107163102 ATAATATAATAAT
1 ATAATATATTAAT
107163115 A
1 A
107163116 CATAAAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 10 0.38
14 4 0.15
15 3 0.12
16 9 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATATATTAAT
Found at i:107163115 original size:8 final size:8
Alignment explanation
Indices: 107163069--107163107 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
107163059 AAGTATATAG
107163069 TATAATAA
1 TATAATAA
*
107163077 TATATTAA
1 TATAATAA
107163085 TATAATAA
1 TATAATAA
107163093 TATAATAA
1 TATAATAA
107163101 TATAATA
1 TATAATA
107163108 TAATAATACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TATAATAA
Found at i:107164817 original size:91 final size:91
Alignment explanation
Indices: 107164719--107164895 Score: 354
Period size: 91 Copynumber: 1.9 Consensus size: 91
107164709 ATGAATTGTA
107164719 TAGATAATTTATGTTAGATACCTATGAATATATATGAGTTAGATCATTATATTGATAATTTTGAC
1 TAGATAATTTATGTTAGATACCTATGAATATATATGAGTTAGATCATTATATTGATAATTTTGAC
107164784 CTGTTTTAAATGTATTTAATTTATGT
66 CTGTTTTAAATGTATTTAATTTATGT
107164810 TAGATAATTTATGTTAGATACCTATGAATATATATGAGTTAGATCATTATATTGATAATTTTGAC
1 TAGATAATTTATGTTAGATACCTATGAATATATATGAGTTAGATCATTATATTGATAATTTTGAC
107164875 CTGTTTTAAATGTATTTAATT
66 CTGTTTTAAATGTATTTAATT
107164896 GTGTTTTGGA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (91 bp):
TAGATAATTTATGTTAGATACCTATGAATATATATGAGTTAGATCATTATATTGATAATTTTGAC
CTGTTTTAAATGTATTTAATTTATGT
Found at i:107164819 original size:14 final size:14
Alignment explanation
Indices: 107164800--107164829 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
107164790 TAAATGTATT
107164800 TAATTTATGTTAGA
1 TAATTTATGTTAGA
107164814 TAATTTATGTTAGA
1 TAATTTATGTTAGA
107164828 TA
1 TA
107164830 CCTATGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (14 bp):
TAATTTATGTTAGA
Found at i:107165771 original size:16 final size:17
Alignment explanation
Indices: 107165750--107165784 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
107165740 AATTAATTTA
*
107165750 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
107165766 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
107165783 AA
1 AA
107165785 CTCAATTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:107173584 original size:114 final size:113
Alignment explanation
Indices: 107173383--107173664 Score: 352
Period size: 114 Copynumber: 2.5 Consensus size: 113
107173373 ATTTCCAGCA
* * * *
107173383 GCAGCCGCCATGAGGAGGGACTGTTGATGCGCTAGCAAAGCTAGTTGTTGTTGAGTGGGTAAGCT
1 GCAGCAGCCATGAGAAGGGACTGTTGCTGAGCTAGCAAAGCTAGTTGTTGTTGAGTGGGTAA-CT
** * * * * *
107173448 TGTGGTGGTTGATGGAGGCTGTTGACCGTTTCCAGGAGCAGCTTTAGCT
65 CATGGTGATTGATGGAGACTGTTGACCATTTCCAGAAGCAGATTTAGCT
* * * *
107173497 GCAGCAGCCATAAGAAGGGACTGTTGCTGTGCTAACATAGCTAGTTGTTGTTGAGTGGGT-A-TC
1 GCAGCAGCCATGAGAAGGGACTGTTGCTGAGCTAGCAAAGCTAGTTGTTGTTGAGTGGGTAACTC
*
107173560 ATGGTGCCATTGGATGGAGACTGTTGAGCATTTCCAGAAGCAGATTTAGCT
66 ATGGTG--ATT-GATGGAGACTGTTGACCATTTCCAGAAGCAGATTTAGCT
**
107173611 GCAGCAGCCATGAGAAGGGACTGTTGCTGAGCTAGCGCAGCTAGTTGTTGTTGA
1 GCAGCAGCCATGAGAAGGGACTGTTGCTGAGCTAGCAAAGCTAGTTGTTGTTGA
107173665 TGCATTGCAA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
111 6 0.04
113 3 0.02
114 136 0.94
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.28
Consensus pattern (113 bp):
GCAGCAGCCATGAGAAGGGACTGTTGCTGAGCTAGCAAAGCTAGTTGTTGTTGAGTGGGTAACTC
ATGGTGATTGATGGAGACTGTTGACCATTTCCAGAAGCAGATTTAGCT
Found at i:107176914 original size:2 final size:2
Alignment explanation
Indices: 107176909--107176937 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
107176899 GCGCGTGCGT
107176909 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
107176938 GATGGCAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:107180019 original size:65 final size:66
Alignment explanation
Indices: 107179936--107180084 Score: 162
Period size: 65 Copynumber: 2.3 Consensus size: 66
107179926 GCATCATAAC
** * ** *
107179936 TTGTAAGTTACCAATTAATCTGCATAGGGTAATGCTCATTATTTCTTACAATG-ATCATAACTTG
1 TTGTAAGTTACCAATTAATCCACATAGGATAATGCTCATTACATCTTACAATGCACCATAACTTG
107180000 T
66 T
*** *
107180001 TTGTAAGTTACTGCTTAATCCACATAGGATAATGCTCATTACATCTTATAATGCACCATAAC-T-
1 TTGTAAGTTACCAATTAATCCACATAGGATAATGCTCATTACATCTTACAATGCACCATAACTTG
107180064 T
66 T
* *
107180065 TTCTAAGCTACC-ATTAATCC
1 TTGTAAGTTACCAATTAATCC
107180085 CGCCTGCCAC
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
63 7 0.10
64 10 0.14
65 45 0.65
66 7 0.10
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (66 bp):
TTGTAAGTTACCAATTAATCCACATAGGATAATGCTCATTACATCTTACAATGCACCATAACTTG
T
Found at i:107182286 original size:3 final size:3
Alignment explanation
Indices: 107182280--107182330 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
107182270 GAAAAAAAAA
*
107182280 AAG AAG AAG AAG AAG AAG -AG AAG CAGG AAG -AG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG
*
107182324 GAG AAG A
1 AAG AAG A
107182331 GGAAAAATGG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.61, C:0.02, G:0.37, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:107182316 original size:26 final size:26
Alignment explanation
Indices: 107182284--107182334 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
107182274 AAAAAAAAGA
107182284 AGAAGAAGAAGAA-GAGAAGCAGGAAG
1 AGAAGAAGAAGAAGGAGAAG-AGGAAG
107182310 AGAAGAAGAAGAAGGAGAAGAGGAA
1 AGAAGAAGAAGAAGGAGAAGAGGAA
107182335 AAATGGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.59, C:0.02, G:0.39, T:0.00
Consensus pattern (26 bp):
AGAAGAAGAAGAAGGAGAAGAGGAAG
Found at i:107184233 original size:43 final size:43
Alignment explanation
Indices: 107184139--107184316 Score: 258
Period size: 43 Copynumber: 4.2 Consensus size: 43
107184129 TAAAAAAAAC
*
107184139 TCATTGCATGCATATTAAAAAATA-TGCAACA-C--ACCAACAA
1 TCATTGCATGCATATTAAAAAATAGT-CAACAGCTTTCCAACAA
107184179 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
* *
107184222 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
* *
107184265 TCATTGCATACATATTAAAAAA-AGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
*
107184307 TCACTGCATG
1 TCATTGCATG
107184317 TGATCAGCAA
Statistics
Matches: 125, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
40 29 0.23
41 2 0.02
42 25 0.20
43 69 0.55
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAGCTTTCCAACAA
Found at i:107184234 original size:83 final size:84
Alignment explanation
Indices: 107184139--107184316 Score: 263
Period size: 83 Copynumber: 2.1 Consensus size: 84
107184129 TAAAAAAAAC
*
107184139 TCATTGCATGCATATTAAAAAATA-TGCAAC-AC-ACCAACAATCATTGCATGCATATTAAAAAA
1 TCATTGCATGCATATTAAAAAATAGT-CAACAACTACCAACAATCATTGCATACATATTAAAAAA
107184201 TAGTCAACAGCTTTCCAACAA
65 -AGTCAACAGCTTTCCAACAA
* *
107184222 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAATAATCATTGCATACATATTAAAAAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAAC-TACCAACAATCATTGCATACATATTAAAAAA
*
107184287 AGTCAATAGCTTTCCAACAA
65 AGTCAACAGCTTTCCAACAA
*
107184307 TCACTGCATG
1 TCATTGCATG
107184317 TGATCAGCAA
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
83 28 0.33
84 3 0.03
85 28 0.33
86 27 0.31
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (84 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAACTACCAACAATCATTGCATACATATTAAAAAAA
GTCAACAGCTTTCCAACAA
Found at i:107184315 original size:85 final size:83
Alignment explanation
Indices: 107184143--107184316 Score: 253
Period size: 85 Copynumber: 2.1 Consensus size: 83
107184133 AAAAACTCAT
*
107184143 TGCATGCATATTAAAAAATATGCAACACACCAACAATCATTGCATGCATATTAAAAAATAGTCAA
1 TGCATGCATATTAAAAAATATGCAACACACCAACAATCATTGCATACATATTAAAAAATAGTCAA
*
107184208 CAGCTTTCCAACAATCAT
66 CAGCTTTCCAACAATCAC
* *
107184226 TGCATGCATATTAAAAAATA-GTCAACAACTTTCCAATAATCATTGCATACATATTAAAAAA-AG
1 TGCATGCATATTAAAAAATATG-CAAC-AC--ACCAACAATCATTGCATACATATTAAAAAATAG
*
107184289 TCAATAGCTTTCCAACAATCAC
62 TCAACAGCTTTCCAACAATCAC
107184311 TGCATG
1 TGCATG
107184317 TGATCAGCAA
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
82 1 0.01
83 24 0.29
84 2 0.02
85 28 0.34
86 27 0.33
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.27
Consensus pattern (83 bp):
TGCATGCATATTAAAAAATATGCAACACACCAACAATCATTGCATACATATTAAAAAATAGTCAA
CAGCTTTCCAACAATCAC
Found at i:107185959 original size:15 final size:16
Alignment explanation
Indices: 107185934--107185982 Score: 84
Period size: 15 Copynumber: 3.2 Consensus size: 16
107185924 TCAGATGCAT
107185934 CACTATCACTACCAGA
1 CACTATCACTACCAGA
107185950 CACT-TCACTACCAGA
1 CACTATCACTACCAGA
107185965 CA-TATCACTACCAGA
1 CACTATCACTACCAGA
107185980 CAC
1 CAC
107185983 GTTTTCTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.03
15 26 0.84
16 4 0.13
ACGTcount: A:0.37, C:0.39, G:0.06, T:0.18
Consensus pattern (16 bp):
CACTATCACTACCAGA
Found at i:107186418 original size:64 final size:64
Alignment explanation
Indices: 107186267--107186530 Score: 388
Period size: 64 Copynumber: 4.2 Consensus size: 64
107186257 TAGGAGCCTG
* * * * ** *
107186267 GATACAAACAATGACAGATATACACAATAAACATCAGTTTAATAATG-TA-TAATTTAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGACATTCATACAATGACA
*
107186329 GATACAAACAATGGCAGATATACACAATAAACATCAATTTGATAATGACATTCATACAATGACA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGACATTCATACAATGACA
* **
107186393 GATACAAACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGTATTCATACAATGACA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGACATTCATACAATGACA
* * *
107186457 GATACAAACAATGGCAGATACACACAATAAAGATCAGTTTGATAATGACATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGACATTCATACAATGACA
107186521 GATACAAACA
1 GATACAAACA
107186531 CATCAAAATC
Statistics
Matches: 184, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 44 0.24
63 1 0.01
64 139 0.76
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (64 bp):
GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGACATTCATACAATGACA
Found at i:107186469 original size:16 final size:16
Alignment explanation
Indices: 107186448--107186484 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
107186438 TGGTATTCAT
107186448 ACAATGACAGATACAA
1 ACAATGACAGATACAA
* *
107186464 ACAATGGCAGATACAC
1 ACAATGACAGATACAA
107186480 ACAAT
1 ACAAT
107186485 AAAGATCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.22, G:0.14, T:0.14
Consensus pattern (16 bp):
ACAATGACAGATACAA
Found at i:107186724 original size:12 final size:12
Alignment explanation
Indices: 107186707--107186745 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
107186697 CTAGATTGAG
*
107186707 ATCGAAATCGAA
1 ATCGAAATCAAA
107186719 ATCGAAATCAAA
1 ATCGAAATCAAA
* *
107186731 ATCAAAATCAGA
1 ATCGAAATCAAA
107186743 ATC
1 ATC
107186746 AGTGAGTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.54, C:0.18, G:0.10, T:0.18
Consensus pattern (12 bp):
ATCGAAATCAAA
Found at i:107187861 original size:10 final size:10
Alignment explanation
Indices: 107187846--107187878 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
107187836 CGAAAGTACC
107187846 AAAAAAAAA-
1 AAAAAAAAAG
107187855 AAAAAAAAAG
1 AAAAAAAAAG
*
107187865 AAAGAAAAAG
1 AAAAAAAAAG
107187875 AAAA
1 AAAA
107187879 TGGGGATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:107189522 original size:25 final size:25
Alignment explanation
Indices: 107189494--107189544 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
107189484 AAAAGAAGAA
107189494 AAGCTTATAGCAGGAATCTTCATAT
1 AAGCTTATAGCAGGAATCTTCATAT
*
107189519 AAGCTTTTAGCAGGAATCTTCATAT
1 AAGCTTATAGCAGGAATCTTCATAT
107189544 A
1 A
107189545 TCTTTGCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (25 bp):
AAGCTTATAGCAGGAATCTTCATAT
Found at i:107197887 original size:19 final size:21
Alignment explanation
Indices: 107197863--107197914 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
107197853 ATTCTGACAT
107197863 GAAACAGTA-AAA-AAAAAAA
1 GAAACAGTAGAAAGAAAAAAA
107197882 GAAACAGTAGAAAGAAAAAAA
1 GAAACAGTAGAAAGAAAAAAA
107197903 GAAACAGTAGAA
1 GAAACAGTAGAA
107197915 GGATGCTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 9 0.29
20 3 0.10
21 19 0.61
ACGTcount: A:0.71, C:0.06, G:0.17, T:0.06
Consensus pattern (21 bp):
GAAACAGTAGAAAGAAAAAAA
Found at i:107198112 original size:8 final size:8
Alignment explanation
Indices: 107198080--107198129 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
107198070 CTCATTTCGG
107198080 GAAGA-AA
1 GAAGAGAA
*
107198087 GGAGAGAA
1 GAAGAGAA
107198095 -AAGA-AA
1 GAAGAGAA
107198101 GAAGAGAA
1 GAAGAGAA
*
107198109 GAAGAAAA
1 GAAGAGAA
107198117 GAAGAGAA
1 GAAGAGAA
107198125 GAAGA
1 GAAGA
107198130 AAAAAGAGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
6 2 0.06
7 11 0.31
8 23 0.64
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (8 bp):
GAAGAGAA
Found at i:107198117 original size:16 final size:15
Alignment explanation
Indices: 107198080--107198137 Score: 82
Period size: 16 Copynumber: 3.9 Consensus size: 15
107198070 CTCATTTCGG
*
107198080 GAAGAAAGGAGAGAA
1 GAAGAAAGAAGAGAA
107198095 -AAGAAAGAAGAGAA
1 GAAGAAAGAAGAGAA
107198109 GAAGAAAAGAAGAGAA
1 GAAG-AAAGAAGAGAA
*
107198125 GAAGAAAAAAGAG
1 GAAGAAAGAAGAG
107198138 CAAGCAGACG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.33
15 11 0.28
16 15 0.38
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (15 bp):
GAAGAAAGAAGAGAA
Found at i:107198615 original size:16 final size:16
Alignment explanation
Indices: 107198594--107198663 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
107198584 TGATGTGAAG
107198594 AAAATATGAAAAAAAT
1 AAAATATGAAAAAAAT
107198610 AAAATATG-AAAAAAT
1 AAAATATGAAAAAAAT
*
107198625 AAAATACGAAAAGAAAT
1 AAAATATGAAAA-AAAT
* *
107198642 AAACTATGAAAAAAGT
1 AAAATATGAAAAAAAT
107198658 AAAATA
1 AAAATA
107198664 AAATACAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
15 14 0.30
16 19 0.40
17 14 0.30
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (16 bp):
AAAATATGAAAAAAAT
Found at i:107198636 original size:14 final size:15
Alignment explanation
Indices: 107198603--107198663 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
107198593 GAAAATATGA
*
107198603 AAAAAATAAAATATG
1 AAAAAATAAAATACG
107198618 AAAAAATAAAATACG
1 AAAAAATAAAATACG
* *
107198633 AAAAGAAATAAACTATG
1 -AAA-AAATAAAATACG
107198650 AAAAAAGTAAAATA
1 AAAAAA-TAAAATA
107198664 AAATACAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
15 17 0.44
16 12 0.31
17 10 0.26
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.16
Consensus pattern (15 bp):
AAAAAATAAAATACG
Found at i:107198695 original size:10 final size:11
Alignment explanation
Indices: 107198665--107198716 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
107198655 AGTAAAATAA
*
107198665 AATACAAAAAT
1 AATATAAAAAT
*
107198676 AGTATAAAAAT
1 AATATAAAAAT
107198687 AATATAAAAAT
1 AATATAAAAAT
*
107198698 AAATTACAAAAAT
1 -AA-TATAAAAAT
107198711 AATATA
1 AATATA
107198717 TTTTAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
11 22 0.65
12 4 0.12
13 8 0.24
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (11 bp):
AATATAAAAAT
Found at i:107198838 original size:138 final size:138
Alignment explanation
Indices: 107198682--107199577 Score: 1423
Period size: 137 Copynumber: 6.5 Consensus size: 138
107198672 AAATAGTATA
* * * *
107198682 AAAATAATAT-AAAAATAAATTACAAAAATAATATATTTTAAAAAATAAAATCCGAGA-ATTTTA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGA-ATATTTTA
*
107198745 GAAATACAAACAAAGTGACAAAATCAAGGTTATTTAAAAAACACTAAAATAATATATTTGAAACA
65 GAAATACAAACAAAGTGACAAAATCAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACA
107198810 TTATGTACT
130 TTATGTACT
*
107198819 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATTCGAATATTTTAG
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
*
107198884 AAATACAAACAAAGTGACAAAATC-AGGTTTATTTAAAAAACACTAAAATATTACATTTGAAACA
66 AAATACAAACAAAGTGACAAAATCAAGG-TTATTTAAAAAACACTAAAATAATACATTTGAAACA
107198948 TTATGTACT
130 TTATGTACT
* * *
107198957 AAAATAAGATAAAAAAATAAAATACAAAAATATTATATTCTAAAAAATAAAATCCGAATATTTTA
1 AAAATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTA
* * * *
107199022 GAAATAGAAACAAAAG-GACAAAATCAGGGTTATTTAAAAAAAATTAAAATAATACATTTGAAAC
65 GAAATACAAAC-AAAGTGACAAAATCAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAAC
107199086 ATTATGTACT
129 ATTATGTACT
* *
107199096 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAGAATCTGAATATTTTAG
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
*
107199161 AAATACAAACAAAGTGACAAAATC-AGAGTTATTTAAAAAACACTAAAATAGTACATTTGAAACA
66 AAATACAAACAAAGTGACAAAATCAAG-GTTATTTAAAAAACACTAAAATAATACATTTGAAACA
107199225 TTATGTACT
130 TTATGTACT
107199234 AAAATAAGAT-AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
*
107199298 AAATACAAACAAAGGGACAAAATCTGAA--TTATTTAAAAAACACTAAAATAATACATTTGAAAC
66 AAATACAAACAAAGTGACAAAATC--AAGGTTATTTAAAAAACACTAAAATAATACATTTGAAAC
107199361 ATTATGTACT
129 ATTATGTACT
*
107199371 AAAATAAGAT-AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
* * * * *
107199435 AAATATAAACAAAGGGACAAAATCAGGGTTATTTAAAAAATACTAAAATAATATATTTGAAACAT
66 AAATACAAACAAAGTGACAAAATCAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
107199500 TATGTACT
131 TATGTACT
*
107199508 AAAATAAGATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAGAATCCGAATATTTTA
1 AAAATAAGAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTA
*
107199573 AAAAT
65 GAAAT
107199578 TTTAGAAATA
Statistics
Matches: 706, Mismatches: 38, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
135 1 0.00
137 276 0.39
138 246 0.35
139 176 0.25
140 7 0.01
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (138 bp):
AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAG
AAATACAAACAAAGTGACAAAATCAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
TATGTACT
Found at i:107199186 original size:277 final size:276
Alignment explanation
Indices: 107198692--107199577 Score: 1442
Period size: 277 Copynumber: 3.2 Consensus size: 276
107198682 AAAATAATAT
* *
107198692 AAAAATAAATTACAAAAATAATATATTTTAAAAAATAAAATCCGAGA-ATTTTAGAAATACAAAC
1 AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGA-ATATTTTAGAAATACAAAC
* *
107198756 -AAAGTGACAAAATCAAGGTTATTTAAAAAACACTAAAATAATATATTTGAAACATTATGTACTA
65 AAAAG-GACAAAATCAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAACATTATGTACTA
107198820 AAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAAT-TCGAATATTTTAG
129 AAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCT-GAATATTTTAG
*
107198884 AAATACAAACAAAGTGACAAAATCAGGTTTATTTAAAAAACACTAAAATATTACATTTGAAACAT
193 AAATACAAACAAAGTGACAAAATCAGG-TTATTTAAAAAACACTAAAATAATACATTTGAAACAT
107198949 TATGTACTAAAATAAGATAA
257 TATGTACTAAAATAAGATAA
* * *
107198969 AAAAATAAAATACAAAAATATTATATTCTAAAAAATAAAATCCGAATATTTTAGAAATAGAAACA
1 AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAATACAAACA
* *
107199034 AAAGGACAAAATCAGGGTTATTTAAAAAAAATTAAAATAATACATTTGAAACATTATGTACTAAA
66 AAAGGACAAAATCAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAA
*
107199099 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAGAATCTGAATATTTTAGAAA
131 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
*
107199164 TACAAACAAAGTGACAAAATCAGAGTTATTTAAAAAACACTAAAATAGTACATTTGAAACATTAT
196 TACAAACAAAGTGACAAAATCAG-GTTATTTAAAAAACACTAAAATAATACATTTGAAACATTAT
107199229 GTACTAAAATAAGAT--
260 GTACTAAAATAAGATAA
*
107199244 AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAATACAAACA
1 AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAATACAAACA
* * **
107199309 AAGGGACAAAATCTGAATTATTTAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAA
66 AAAGGACAAAATCAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAA
* *
107199374 ATAAGAT-AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAA
131 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
* * * *
107199438 TATAAACAAAGGGACAAAATCAGGGTTATTTAAAAAATACTAAAATAATATATTTGAAACATTAT
196 TACAAACAAAGTGACAAAATCA-GGTTATTTAAAAAACACTAAAATAATACATTTGAAACATTAT
107199503 GTACTAAAATAAGATAA
260 GTACTAAAATAAGATAA
* * *
107199520 AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAGAATCCGAATATTTTAAAAAT
1 AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAAT
107199578 TTTAGAAATA
Statistics
Matches: 572, Mismatches: 30, Indels: 15
0.93 0.05 0.02
Matches are distributed among these distances:
274 127 0.22
275 128 0.22
276 57 0.10
277 254 0.44
278 6 0.01
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.28
Consensus pattern (276 bp):
AAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGAAATACAAACA
AAAGGACAAAATCAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAACATTATGTACTAAA
ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAATATTTTAGAAA
TACAAACAAAGTGACAAAATCAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACATTATG
TACTAAAATAAGATAA
Found at i:107201385 original size:267 final size:268
Alignment explanation
Indices: 107200894--107201493 Score: 599
Period size: 267 Copynumber: 2.3 Consensus size: 268
107200884 CAAAGAGACA
* ** ** * *
107200894 TTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGATATGGCACTATTTCCCGAATTGC
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTTCCCAAATTGC
* * * *
107200959 CAAACATCGAACATTTCTTCCGTTTTCAAGAGTTTTTAGAAAACGTGAGTGAAATTCCAAAGGGA
66 CAAACACCGAACATTCCTTCCGTTTTAAAGAGTTTTTAGAAAACCTGAGTGAAATTCCAAAGGGA
* * * **
107201024 TCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGTACGATAGGGCACGATTCTCGAAATT
131 TATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCTCGAAATT
* *
107201089 GCCAAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTA
196 GCCAAACATCAAACATCGCATTCGTTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTA
107201154 AAGGAACG
261 AAGGAACG
107201162 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCA-TGA-TTCCCAAATTG
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACT-ATTTCCCAAATTG
* ** * *
107201225 TCAAACACCGAGTATTGCCTT-CGTTTTAAAG-GATTTTTAGAAGACCTGAGTGAAATTTCAAAG
65 CCAAACACCGAACATT-CCTTCCGTTTTAAAGAG-TTTTTAGAAAACCTGAGTGAAATTCCAAAG
* * * * ** * * *
107201288 GGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCGCGATTC-CGCG
128 GGATATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCTCG-A
* * * * ** ** * * *
107201352 AATTGCCAAATATCAAACTTTGCCTTCGTTTTAAA-GAATTT-TT--AAAAGGCACGAGTGAAAT
192 AATTGCCAAACATCAAACATCGCATTCGTTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAA
* * * **
107201413 TTTGAAGGGATA
257 CTTAAAGGAACG
* ** * * *
107201425 TTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACTA-TTCCGCGAATTG
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTTCC-CAAATTG
107201489 CCAAA
65 CCAAA
107201494 TATCGAATCT
Statistics
Matches: 271, Mismatches: 55, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
263 69 0.25
264 11 0.04
265 2 0.01
266 7 0.03
267 135 0.50
268 47 0.17
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (268 bp):
TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTTCCCAAATTGC
CAAACACCGAACATTCCTTCCGTTTTAAAGAGTTTTTAGAAAACCTGAGTGAAATTCCAAAGGGA
TATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCTCGAAATT
GCCAAACATCAAACATCGCATTCGTTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTA
AAGGAACG
Found at i:107201528 original size:132 final size:132
Alignment explanation
Indices: 107200871--107201529 Score: 589
Period size: 132 Copynumber: 5.0 Consensus size: 132
107200861 CTTAGAAAAT
* * * **
107200871 ACGAGTGAAATTTCAAAGAGACATTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGA
1 ACGAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA
* ** * *
107200936 TATGGCACTATTTCC-CGAATTGCCAAACATCGAACAT-TTCTTCCGTTTTCAAGAGTTTTTAGA
66 TAGGGCACTA-TTCCGCGAATTGCCAAACATCGAACATCGCCTT-CGTTTTAAAGAATTTTTA-A
107200999 AA-AC
128 AAGAC
** * * ** * * ** *
107201003 GTGAGTGAAATTCCAAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGTACGA
1 ACGAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA
* * * * **
107201068 TAGGGCACGATTCTCG-AAATTGCCAAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAA
66 TAGGGCACTATTC-CGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAA-GAATTT-TT--
*
107201132 AAAAAAC
126 AAAAGAC
* * * * ** **
107201139 ATGAATGAAAACTT-AAAGGAACGTTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACG
1 ACGAGTG-AAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACG
* * * ** * * *
107201203 ATAGGGCA-TGATTCC-CAAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGA
65 ATAGGGCACT-ATTCCGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAATTTTTAAA
107201266 AGAC
129 AGAC
* * *
107201270 -CTGAGTGAAATTTCAAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACG
1 AC-GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACG
* * * * * * *
107201334 TTAGGGCGCGATTCCGCGAATTGCCAAATATCAAACTTTGCCTTCGTTTTAAAGAATTTTTAAAA
65 ATAGGGCACTATTCCGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAATTTTTAAAA
*
107201399 GGC
130 GAC
** * * *
107201402 ACGAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGT
1 ACGAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA
* *
107201467 TAGGGCACTATTCCGCGAATTGCCAAATATCGAATC-TCGTCTTCGTTTTAAAGAATTTTTAAA
66 TAGGGCACTATTCCGCGAATTGCCAAACATCGAA-CATCGCCTTCGTTTTAAAGAATTTTTAAA
107201530 TGAATACTTA
Statistics
Matches: 424, Mismatches: 86, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
130 5 0.01
131 65 0.15
132 240 0.57
133 10 0.02
134 7 0.02
135 33 0.08
136 60 0.14
137 4 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (132 bp):
ACGAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA
TAGGGCACTATTCCGCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAAGAATTTTTAAAAG
AC
Found at i:107209504 original size:39 final size:39
Alignment explanation
Indices: 107209460--107209546 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
107209450 TACCATCACA
*
107209460 AAGCCTGCGGGACTTTAGCTCGAATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACG
* *
107209499 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACG
107209538 AAGCCTGCG
1 AAGCCTGCG
107209547 ATACATTTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACG
Found at i:107209549 original size:25 final size:25
Alignment explanation
Indices: 107209521--107209571 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
107209511 CTTTAGCCCG
*
107209521 GATACATTTCCAGCATGAAGCCTGC
1 GATACATTTCCAACATGAAGCCTGC
107209546 GATACATTTCCAACATGAAGCCTGC
1 GATACATTTCCAACATGAAGCCTGC
107209571 G
1 G
107209572 GGACTTTAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (25 bp):
GATACATTTCCAACATGAAGCCTGC
Found at i:107209589 original size:64 final size:64
Alignment explanation
Indices: 107209483--107209610 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
107209473 TTTAGCTCGA
* * *
107209483 ATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCATGAAGCCTGCG
1 ATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCTGCG
* *
107209547 ATACATTTCCAACATGAAGCCTGCGGGACTTTAGCCCTGATACATTTCCAACACGAAGCCTGCG
1 ATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCTGCG
107209611 GGACTTTAGC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (64 bp):
ATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCTGCG
Found at i:107209605 original size:39 final size:39
Alignment explanation
Indices: 107209546--107209672 Score: 227
Period size: 39 Copynumber: 3.3 Consensus size: 39
107209536 TGAAGCCTGC
*
107209546 GATACATTTCCAACATGAAGCCTGCGGGACTTTAGCCCT
1 GATACATTTCCAACATGAAGCCTGCGGGACTTTAGCCCG
*
107209585 GATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCG
1 GATACATTTCCAACATGAAGCCTGCGGGACTTTAGCCCG
*
107209624 GATACATTTCCAGCATGAAGCCTGCGGGACTTTAGCCCG
1 GATACATTTCCAACATGAAGCCTGCGGGACTTTAGCCCG
107209663 GATACATTTC
1 GATACATTTC
107209673 TAGTGTCTTG
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
GATACATTTCCAACATGAAGCCTGCGGGACTTTAGCCCG
Found at i:107209639 original size:103 final size:103
Alignment explanation
Indices: 107209460--107209649 Score: 346
Period size: 103 Copynumber: 1.8 Consensus size: 103
107209450 TACCATCACA
* *
107209460 AAGCCTGCGGGACTTTAGCTCGAATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGAATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
107209525 CATTTCCAGCATGAAGCCTGCGATACATTTCCAACATG
66 CATTTCCAGCATGAAGCCTGCGATACATTTCCAACATG
107209563 AAGCCTGCGGGACTTTAGCCCTG-ATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGAT
1 AAGCCTGCGGGACTTTAGCCC-GAATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGAT
107209627 ACATTTCCAGCATGAAGCCTGCG
65 ACATTTCCAGCATGAAGCCTGCG
107209650 GGACTTTAGC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
103 83 0.99
104 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (103 bp):
AAGCCTGCGGGACTTTAGCCCGAATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
CATTTCCAGCATGAAGCCTGCGATACATTTCCAACATG
Found at i:107215246 original size:39 final size:39
Alignment explanation
Indices: 107215202--107215332 Score: 217
Period size: 39 Copynumber: 3.4 Consensus size: 39
107215192 AATTATATTA
* *
107215202 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
107215241 CCAGCACGAAGCCTGCGGGACTTTATCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
107215280 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
107215319 CCAACATGAAGCCT
1 CCAGCACGAAGCCT
107215333 ACGATGCATT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:107215376 original size:64 final size:64
Alignment explanation
Indices: 107215275--107215396 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
107215265 ATCCCGGATA
* * *
107215275 CATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACATGAAGCCTACGATG
1 CATTTCCAACACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCTACGATG
* *
107215339 CATTTCCAACATGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCT
1 CATTTCCAACACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCT
107215397 GCGGGACTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22
Consensus pattern (64 bp):
CATTTCCAACACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCTACGATG
Found at i:107215394 original size:39 final size:39
Alignment explanation
Indices: 107215339--107215616 Score: 477
Period size: 39 Copynumber: 7.2 Consensus size: 39
107215329 GCCTACGATG
* *
107215339 CATTTCCAACATGAAGCCTACGGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
*
107215378 CATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
*
107215417 CATTTCCAACATGAAGCCTGCGGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
107215456 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
*
107215495 CATTTTCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
* *
107215534 CATTTCCAGCACGAAGCCTGCAGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
*
107215573 CATTTCCAGCACGAAG-CTGCGGGACTTTAGCCCGGATA
1 CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
107215611 CATTTC
1 CATTTC
107215617 TAGTGTCTTG
Statistics
Matches: 228, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
38 27 0.12
39 201 0.88
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (39 bp):
CATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATA
Found at i:107215415 original size:103 final size:105
Alignment explanation
Indices: 107215230--107215616 Score: 447
Period size: 117 Copynumber: 3.5 Consensus size: 105
107215220 GACTTTAGCT
* *
107215230 CGGATACATTTCCAGCACGAAGCCTGCGGGACTTTATCCCGGATACATTTCCAGCACGAAGCCTG
1 CGGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTG
107215295 CGGGACTTTAGCCCGGATACATTTCCAACATGAAGCCTA-
66 CGGGACTTTAGCCCGGATACATTTCCAACATGAAGCCTAC
* * *
107215334 C-GATGCATTTCCAACATGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTG
1 CGGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTG
107215398 CGGGACTTTAGCCCGGATACATTTCCAACATGAAGCCTGCGGGACTTTAGCC
66 CGGGACTTTAGCCCGGATACATTTCCAACATGAA----GC----C--TA--C
* *
107215450 CGGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTTCAACACGAAGCCTG
1 CGGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTG
* *
107215515 CGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCAGGACTTTAGCC
66 CGGGACTTTAGCCCGGATACATTTCCA--AC--A---TG-AAG-C-CTA--C
*
107215567 CGGATACATTTCCAGCACGAAG-CTGCGGGACTTTAGCCCGGATACATTTC
1 CGGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
107215617 TAGTGTCTTG
Statistics
Matches: 245, Mismatches: 15, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
103 92 0.38
104 1 0.00
107 2 0.01
111 1 0.00
113 2 0.01
116 28 0.11
117 111 0.45
119 2 0.01
121 2 0.01
122 1 0.00
124 2 0.01
125 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (105 bp):
CGGATACATTTCCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTG
CGGGACTTTAGCCCGGATACATTTCCAACATGAAGCCTAC
Found at i:107221059 original size:4 final size:4
Alignment explanation
Indices: 107221052--107221133 Score: 71
Period size: 4 Copynumber: 20.2 Consensus size: 4
107221042 TCCCTTTTTT
** *
107221052 TTTC TTTC TTTC TTTC -TTC TTTC TTTC TCAC GTTTGC --TC TTTG TTAGTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC TTTC TT--TC
*
107221101 TTTC TATC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
107221134 CACGTTTGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
2 1 0.02
3 4 0.06
4 53 0.84
5 1 0.02
6 4 0.06
ACGTcount: A:0.04, C:0.24, G:0.05, T:0.67
Consensus pattern (4 bp):
TTTC
Found at i:107221165 original size:54 final size:54
Alignment explanation
Indices: 107221053--107221165 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 54
107221043 CCCTTTTTTT
* * *
107221053 TTCTTTCTTTCTTTCTTCTTTCTTTCTCACGTTTGCTCTTTGTTAGTCTTTCTA
1 TTCTTTCTTTCTTTCTTCTTTCTTTCTCACGTTTGCTCTCTGTAACTCTTTCTA
107221107 -TCTTTCTTTCTTTCTTTCTTTCTTTCTCACGTTTGCTCTCTGTAACT-TTTCTA
1 TTCTTTCTTTCTTTC-TTCTTTCTTTCTCACGTTTGCTCTCTGTAACTCTTTCTA
107221160 TTCTTT
1 TTCTTT
107221166 ACTCATTATT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
53 20 0.37
54 34 0.63
ACGTcount: A:0.06, C:0.25, G:0.06, T:0.63
Consensus pattern (54 bp):
TTCTTTCTTTCTTTCTTCTTTCTTTCTCACGTTTGCTCTCTGTAACTCTTTCTA
Found at i:107221177 original size:14 final size:14
Alignment explanation
Indices: 107221158--107221188 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
107221148 GTAACTTTTC
107221158 TATTCTTTACTCAT
1 TATTCTTTACTCAT
*
107221172 TATTCTTTATTCAT
1 TATTCTTTACTCAT
107221186 TAT
1 TAT
107221189 ACTATATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTCTTTACTCAT
Found at i:107226509 original size:39 final size:37
Alignment explanation
Indices: 107226466--107226558 Score: 100
Period size: 39 Copynumber: 2.4 Consensus size: 37
107226456 TAATATAAAT
*
107226466 TAACAAAAATAATAACTAA-C-AATAATTAGGGTTTTTTAC
1 TAACAATAATAATAAC-AACCTAATAA-TA--GTTTTTTAC
*
107226505 TAACAATAATAACCAACAATCCTAATAATAGTTTTTTAC
1 TAACAATAATAA-TAACAA-CCTAATAATAGTTTTTTAC
107226544 TAACAATAATAATAA
1 TAACAATAATAATAA
107226559 GGTTTTTTAC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
38 2 0.04
39 34 0.72
40 3 0.06
41 3 0.06
42 5 0.11
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (37 bp):
TAACAATAATAATAACAACCTAATAATAGTTTTTTAC
Found at i:107226513 original size:36 final size:37
Alignment explanation
Indices: 107226473--107226555 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 37
107226463 AATTAACAAA
* * *
107226473 AATAATAACTAACAA-TAATTAGGGTTTTTTACTAAC
1 AATAATAACCAACAACTAATAAGAGTTTTTTACTAAC
*
107226509 AATAATAACCAACAATCCTAATAATAGTTTTTTACTAAC
1 AATAATAACCAACAA--CTAATAAGAGTTTTTTACTAAC
107226548 AATAATAA
1 AATAATAA
107226556 TAAGGTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
36 14 0.35
39 26 0.65
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.34
Consensus pattern (37 bp):
AATAATAACCAACAACTAATAAGAGTTTTTTACTAAC
Found at i:107226569 original size:25 final size:24
Alignment explanation
Indices: 107226527--107226583 Score: 98
Period size: 25 Copynumber: 2.4 Consensus size: 24
107226517 CCAACAATCC
107226527 TAATAAT-AGTTTTTTACTAACAA
1 TAATAATAAGTTTTTTACTAACAA
107226550 TAATAATAAGGTTTTTTACTAACAA
1 TAATAATAA-GTTTTTTACTAACAA
107226575 TAATAATAA
1 TAATAATAA
107226584 CTAACAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 7 0.22
24 1 0.03
25 24 0.75
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40
Consensus pattern (24 bp):
TAATAATAAGTTTTTTACTAACAA
Found at i:107226897 original size:16 final size:17
Alignment explanation
Indices: 107226872--107226908 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
107226862 CCACACCACC
107226872 TTTT-TTTTCA-ATTTT
1 TTTTATTTTCAGATTTT
*
107226887 TTTTATTTTCAGCTTTT
1 TTTTATTTTCAGATTTT
107226904 TTTTA
1 TTTTA
107226909 CTGTTTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 4 0.21
16 6 0.32
17 9 0.47
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATTTTCAGATTTT
Found at i:107232354 original size:26 final size:25
Alignment explanation
Indices: 107232311--107232359 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
107232301 GAGACCTTTA
107232311 AAAAAAAAGAAAGAAATAAGAAAAGG
1 AAAAAAAAGAAAGAAAT-AGAAAAGG
*
107232337 AAAAAGAAGAAA-AGAATAGAAAA
1 AAAAAAAAGAAAGA-AATAGAAAA
107232360 TGAGAGGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (25 bp):
AAAAAAAAGAAAGAAATAGAAAAGG
Found at i:107233866 original size:131 final size:131
Alignment explanation
Indices: 107233589--107234135 Score: 855
Period size: 131 Copynumber: 4.2 Consensus size: 131
107233579 TGAAATAGAA
* * * * *
107233589 TGTAGATCTTGTCTCCCTAAAGTTGCAGTGGGGCAAATTGAAGATGACAAATCTTGGTTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
107233654 AGTTGCAGTGAAGCAGA-TTAAGCAAGTCCTAGCTCTCTAAAGATGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
107233718 T
131 T
107233719 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
107233784 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTAAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
107233849 T
131 T
* * * *
107233850 TGTAGATCTTGTCTCCCTAAATTTGTAGTGGGGCAAATCGAAGACGACGAATTTTGGCTTCCTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
* *
107233915 AGTTGCAGTGAAGCAGATTTAAACAAGTCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAATA
66 AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
107233980 T
131 T
* * * * *
107233981 GGTAGGTCTTGTCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACGACGAATCTTGGCTTCTTGA
1 TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
*
107234046 AGTTGCAGTGAAGCAGATTTAAGCCACCA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
66 AGTTGCAGTGAAGCAGATTTAAG-CA--AGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGA
107234110 ATAT
128 ATAT
* * *
107234114 TGTAGGTCTTATCTCCTTGAAG
1 TGTAGATCTTGTCTCCCTGAAG
107234136 CCGCGATAGA
Statistics
Matches: 386, Mismatches: 27, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
130 77 0.20
131 248 0.64
132 2 0.01
133 58 0.15
134 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (131 bp):
TGTAGATCTTGTCTCCCTGAAGTTGCAGTGGGGCAAATCGAAGACGACGAATCTTGGCTTCCTGA
AGTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGATGTAGTGGAGTAGGCTGAATA
T
Found at i:107234847 original size:2 final size:2
Alignment explanation
Indices: 107234840--107234870 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
107234830 ATATAGCACG
*
107234840 TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107234871 TCAAAGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:107235801 original size:12 final size:12
Alignment explanation
Indices: 107235786--107235861 Score: 54
Period size: 12 Copynumber: 6.5 Consensus size: 12
107235776 TCGTATAGAT
107235786 ATATATATATAC
1 ATATATATATAC
107235798 ATATATATATA-
1 ATATATATATAC
* *
107235809 ATTATTTTGTATATC
1 A-TA-TATATATA-C
107235824 AT-T-TATAT-C
1 ATATATATATAC
*
107235833 AT-TTTATATAC
1 ATATATATATAC
*
107235844 ATATATGTATAC
1 ATATATATATAC
107235856 ATATAT
1 ATATAT
107235862 TTTAAATCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
9 4 0.08
10 5 0.10
11 8 0.15
12 27 0.52
13 6 0.12
14 1 0.02
15 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.50
Consensus pattern (12 bp):
ATATATATATAC
Found at i:107236230 original size:2 final size:2
Alignment explanation
Indices: 107236223--107236262 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
107236213 TAAGTTTATT
107236223 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107236263 CATGACTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107240771 original size:132 final size:132
Alignment explanation
Indices: 107240151--107240804 Score: 473
Period size: 131 Copynumber: 5.0 Consensus size: 132
107240141 ATTAAGAGTT
* * * * * * * * *
107240151 CTTTAAAATGAAGGCGATATTCGATATTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTT
1 CTTTAAAACGAAAGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
* * ** ** * *
107240216 GCAACTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTT-TAAGA
66 GCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCGGAATTTCACTCATGT-TTTCTAAAA
107240280 ATC
130 ATC
* * * * * * * * * * *
107240283 CCTT-AAATGAAGGCGATATGCGATATTTAGTAATTCGTGGAATCA-TGCCCTAACGTGTTGGGT
1 CTTTAAAACGAAAGCAATATTCGATGTTTGGAAATTCGGGGAAT-AGTGCCCTATCGTGCTGGGT
* * ** *
107240346 TGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATGTCTTCTAAAA
65 TGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCGGAATTTCACTCATGTTTTCTAAAA
107240411 ATC
130 ATC
* * * * * * *
107240414 CTTTAAAACTAAGGCAATACTCGGTGTTT-GACAATTC-GAGAACCA-TGCCCTATTGTGCTGGG
1 CTTTAAAACGAAAGCAATATTCGATGTTTGGA-AATTCGGGGAA-TAGTGCCCTATCGTGCTGGG
** * * * * * * *
107240476 TTGTGATTTCTTGTTTGTTCAAAACAATCGAATATTCCTTTAGG-TTTTCACTCATGTTTTTTAA
64 TTGCAATTTCTCGTTTGCTCAAAATAATCGAATA-TCCCTTCGGAATTTCACTCATGTTTTCT-A
*
107240540 GAAAACC
127 -AAAATC
** * * * * * *
107240547 CTTTAAAAC-AAAGGTGATGTTCGATGCTTGGGAATTC-GAGAATCGTACCCTATCGTGCTGGGT
1 CTTTAAAACGAAA-GCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGT
** * * * ** ** *
107240610 TGCGCTTTTTCATTTGTTCAAAACGATCGAACGTCCCTTCGGAATTTCACTCACGTTTTCTAAAA
65 TGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCGGAATTTCACTCATGTTTTCT-AAA
107240675 AAT-
129 AATC
* *
107240678 CTTTAAAACGAAAGAAATGTTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
1 CTTTAAAACGAAAGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
* * * * * *
107240743 GCAATCTCCCGTTTGCTCAAAATAATCGAATATCTCTTTGGAATTTCACTCGTATTTTCTAA
66 GCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCGGAATTTCACTCATGTTTTCTAA
107240805 GGTGAGGCAA
Statistics
Matches: 413, Mismatches: 95, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
130 2 0.00
131 203 0.49
132 115 0.28
133 92 0.22
134 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (132 bp):
CTTTAAAACGAAAGCAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCCTATCGTGCTGGGTT
GCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCGGAATTTCACTCATGTTTTCTAAAAA
TC
Found at i:107241876 original size:35 final size:35
Alignment explanation
Indices: 107241828--107241896 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
107241818 TAATGAAGAG
*
107241828 AAAGAGATAATCCCTAAGCAAATATCAAAAAGCAA
1 AAAGAGATAATCCCCAAGCAAATATCAAAAAGCAA
* *
107241863 AAAGAGTTCATCCCCAAGCAAATATCAAAAAGCA
1 AAAGAGATAATCCCCAAGCAAATATCAAAAAGCA
107241897 GACTTTGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.54, C:0.20, G:0.12, T:0.14
Consensus pattern (35 bp):
AAAGAGATAATCCCCAAGCAAATATCAAAAAGCAA
Found at i:107245468 original size:18 final size:18
Alignment explanation
Indices: 107245441--107245477 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
107245431 GAGCACAAGG
107245441 AAAAAGAAAAGAAAAGAA
1 AAAAAGAAAAGAAAAGAA
* *
107245459 AAAAATAAAATAAAAGAA
1 AAAAAGAAAAGAAAAGAA
107245477 A
1 A
107245478 GAAGAGGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (18 bp):
AAAAAGAAAAGAAAAGAA
Found at i:107251983 original size:40 final size:40
Alignment explanation
Indices: 107251884--107252017 Score: 173
Period size: 40 Copynumber: 3.3 Consensus size: 40
107251874 TATAATCTCG
* *
107251884 CACACTAAGTGCCTT-TCATAGCCGAAGCTATCTCAATATCG
1 CACACTAAGTGCCTTAT-ATAGCCGAAGCTATCTCGAT-TCA
* *
107251925 CACACTAAGTGCCATATATAGCCGAAGCT-TTTCTGATTCA
1 CACACTAAGTGCCTTATATAGCCGAAGCTATCTC-GATTCA
* *
107251965 CACACTAAGTGCCTTATATAGTCGAAGCTATCTCGATACA
1 CACACTAAGTGCCTTATATAGCCGAAGCTATCTCGATTCA
107252005 CACACTAAGTGCC
1 CACACTAAGTGCC
107252018 AAACATAATT
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
40 50 0.61
41 31 0.38
42 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (40 bp):
CACACTAAGTGCCTTATATAGCCGAAGCTATCTCGATTCA
Found at i:107251991 original size:81 final size:83
Alignment explanation
Indices: 107251839--107252020 Score: 228
Period size: 81 Copynumber: 2.2 Consensus size: 83
107251829 ACTTGATATC
* *
107251839 TCGCACACTAAGTGCCAAAGCAAAGCTGAAGCTATTATAATCTCGCACACTAAGTGCCTTTCATA
1 TCGCACACTAAGTGCCAAAGCAAAGCCGAAGCTATTATAATCTCACACACTAAGTGCCTTTCATA
107251904 GCCGAAGCTATCTCAATA
66 GCCGAAGCTATCTCAATA
* * * * * *
107251922 TCGCACACTAAGTGCCATA-TATAGCCGAAGCTTTTCTGAT-TCACACACTAAGTGCCTTAT-AT
1 TCGCACACTAAGTGCCAAAGCAAAGCCGAAGCTATTATAATCTCACACACTAAGTGCCTT-TCAT
* *
107251984 AGTCGAAGCTATCTCGATA
65 AGCCGAAGCTATCTCAATA
*
107252003 -CACACACTAAGTGCCAAA
1 TCGCACACTAAGTGCCAAA
107252021 CATAATTGAT
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 16 0.19
81 36 0.42
82 16 0.19
83 18 0.21
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (83 bp):
TCGCACACTAAGTGCCAAAGCAAAGCCGAAGCTATTATAATCTCACACACTAAGTGCCTTTCATA
GCCGAAGCTATCTCAATA
Found at i:107257555 original size:24 final size:25
Alignment explanation
Indices: 107257500--107257628 Score: 212
Period size: 25 Copynumber: 5.2 Consensus size: 25
107257490 ACATGAATTC
107257500 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
107257525 TTATCATGAAACATTTACCTAA-CA
1 TTATCATGAAACATTTACCTAACCA
107257549 TTATCAT-AAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
107257574 TTATCATG-AACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
107257598 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
107257623 TTATCA
1 TTATCA
107257629 ATTTGTATCA
Statistics
Matches: 100, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
23 14 0.14
24 35 0.35
25 51 0.51
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:107257577 original size:49 final size:49
Alignment explanation
Indices: 107257500--107257628 Score: 208
Period size: 49 Copynumber: 2.6 Consensus size: 49
107257490 ACATGAATTC
107257500 TTATCATGAAACATTTACCTAA-CCATTATCATGAAACATTTACCTAA-CA
1 TTATCAT-AAACATTTACCTAACCCATTATCATG-AACATTTACCTAACCA
107257549 TTATCATAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCA
1 TTATCATAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCA
* *
107257598 TTATCATGAACATTTACCTAACCTATTATCA
1 TTATCATAAACATTTACCTAACCCATTATCA
107257629 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
48 27 0.36
49 49 0.64
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (49 bp):
TTATCATAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCA
Found at i:107265725 original size:25 final size:25
Alignment explanation
Indices: 107265691--107265820 Score: 221
Period size: 25 Copynumber: 5.2 Consensus size: 25
107265681 ACATGAATTC
107265691 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
107265716 TTATCATGAAACATTTACCTAA-CA
1 TTATCATGAAACATTTACCTAACCA
107265740 TTATCAT-AAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
107265765 TTATCATG-AACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
107265789 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
107265815 TTATCA
1 TTATCA
107265821 ATTTGTATCA
Statistics
Matches: 100, Mismatches: 0, Indels: 9
0.92 0.00 0.08
Matches are distributed among these distances:
23 14 0.14
24 20 0.20
25 59 0.59
26 7 0.07
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:107265768 original size:49 final size:50
Alignment explanation
Indices: 107265691--107265820 Score: 221
Period size: 48 Copynumber: 2.6 Consensus size: 50
107265681 ACATGAATTC
107265691 TTATCATGAAACATTTACCTAA-CCATTATCATGAAACATTTACCTAA-CA
1 TTATCATGAAACATTTACCTAACCCATTATCATG-AACATTTACCTAACCA
107265740 TTATCAT-AAACATTTACCTAACCCATTATCATGAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCA
*
107265789 TTATCATGAAACATTTACCTAACCTATTATCA
1 TTATCATGAAACATTTACCTAACCCATTATCA
107265821 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
48 27 0.35
49 27 0.35
50 23 0.30
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (50 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAACATTTACCTAACCA
Found at i:107269281 original size:2 final size:2
Alignment explanation
Indices: 107269274--107269308 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
107269264 CGTCATCTTT
107269274 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107269309 GAAATTACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:107271204 original size:39 final size:39
Alignment explanation
Indices: 107271126--107271209 Score: 91
Period size: 39 Copynumber: 2.1 Consensus size: 39
107271116 GAAATATGTT
*
107271126 GTTTTTGGAGAGAAAAAGGAAAACGCGTCCTACAGGGCGC
1 GTTTTTGGAGAG-AAAAGGAAAACGCGTCCTACAAGGCGC
* *
107271166 GTTTTTAGGAGAG-AAATGAAAACGTC-TCTTACAAGGCGC
1 GTTTTT-GGAGAGAAAAGGAAAACG-CGTCCTACAAGGCGC
*
107271205 ATTTT
1 GTTTT
107271210 CACTGCCACA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
39 25 0.66
40 7 0.18
41 6 0.16
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.25
Consensus pattern (39 bp):
GTTTTTGGAGAGAAAAGGAAAACGCGTCCTACAAGGCGC
Found at i:107275179 original size:15 final size:16
Alignment explanation
Indices: 107275161--107275190 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
107275151 TAAGGAATAA
107275161 AATAAAA-TCAAAGAG
1 AATAAAATTCAAAGAG
107275176 AATAAAATTCAAAGA
1 AATAAAATTCAAAGA
107275191 AAGATTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (16 bp):
AATAAAATTCAAAGAG
Found at i:107276028 original size:39 final size:39
Alignment explanation
Indices: 107275941--107276018 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
107275931 ATGTACCTAA
* *
107275941 AAAAATTAAA-AAAAATAGAATTAAAAGTTTTGATCTGG
1 AAAAATAAAATAAAAACAGAATTAAAAGTTTTGATCTGG
107275979 AAAAATAAAATAAAAACAGAATTAAAAGTTTTGAT-TGG
1 AAAAATAAAATAAAAACAGAATTAAAAGTTTTGATCTGG
107276017 AA
1 AA
107276019 TTTTGAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 14 0.38
39 23 0.62
ACGTcount: A:0.58, C:0.03, G:0.13, T:0.27
Consensus pattern (39 bp):
AAAAATAAAATAAAAACAGAATTAAAAGTTTTGATCTGG
Found at i:107277654 original size:99 final size:99
Alignment explanation
Indices: 107277441--107277634 Score: 248
Period size: 99 Copynumber: 2.0 Consensus size: 99
107277431 TTTAATTAAT
* * * *
107277441 TAATTAATT-TATTTTTGTTTAAGAATATATTGAACCTTTTCACGCGAAGAGAGATAACAGCCAA
1 TAATTTATTATATTTTT-CTTAAGAATATATCGAACCTTTTCACGCGAAGAGAAATAACAGCCAA
* *
107277505 GCACCCCACCTCGATTACTCAGCCTAACATACTCC
65 GCACCCCACCTAGATTACTCAGCCCAACATACTCC
* * *
107277540 TAATTTATTATATTTTTCTTAAGAATATATCGAACCTTTTGACGCGAAGAGAAATGACAGTCAAG
1 TAATTTATTATATTTTTCTTAAGAATATATCGAACCTTTTCACGCGAAGAGAAATAACAGCCAAG
** *
107277605 CACCTTACCCTAG-TTACTTAGCCCAACATA
66 CACCCCA-CCTAGATTACTCAGCCCAACATA
107277635 TTCTTAAGTA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
99 70 0.86
100 11 0.14
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (99 bp):
TAATTTATTATATTTTTCTTAAGAATATATCGAACCTTTTCACGCGAAGAGAAATAACAGCCAAG
CACCCCACCTAGATTACTCAGCCCAACATACTCC
Found at i:107281102 original size:14 final size:15
Alignment explanation
Indices: 107281073--107281178 Score: 62
Period size: 14 Copynumber: 7.0 Consensus size: 15
107281063 ATTAGTAAAA
107281073 AAGAATATATACATAAT
1 AAGAATATAT--ATAAT
107281090 AA-AATATATATAA-
1 AAGAATATATATAAT
107281103 AAGAATATATA-AGA-
1 AAGAATATATATA-AT
* *
107281117 AA-AATAAATATTAT
1 AAGAATATATATAAT
*
107281131 AAGGAATGTTATATAAT
1 AA-GAAT-ATATATAAT
*
107281148 AAGATATAGTATGTAAT
1 AAGA-ATA-TATATAAT
*
107281165 AA-AATATAAATAAT
1 AAGAATATATATAAT
107281179 TATAATGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
13 11 0.15
14 23 0.32
15 3 0.04
16 13 0.18
17 21 0.30
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.31
Consensus pattern (15 bp):
AAGAATATATATAAT
Found at i:107281578 original size:21 final size:22
Alignment explanation
Indices: 107281547--107281589 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
107281537 ACATTAAAGC
107281547 TAAATTAAAAAATA-AATAAAAT
1 TAAATTAAAAAATATAA-AAAAT
107281569 TAAATT-AAAAATATAAAAAAT
1 TAAATTAAAAAATATAAAAAAT
107281590 ACAAGAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAATTAAAAAATATAAAAAAT
Found at i:107284385 original size:22 final size:22
Alignment explanation
Indices: 107284357--107284399 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
107284347 AATATCACAA
107284357 AATAAT-AATAAAAGAATAAAAG
1 AATAATAAATAAAA-AATAAAAG
107284379 AATAATAAATAAAAAATAAAA
1 AATAATAAATAAAAAATAAAA
107284400 ATTGAGTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (22 bp):
AATAATAAATAAAAAATAAAAG
Found at i:107286811 original size:34 final size:34
Alignment explanation
Indices: 107286771--107286837 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
107286761 GTTTGAGTAG
107286771 GGTTTTCGTTAACCCTAGACTCTACTTCGTCGTA
1 GGTTTTCGTTAACCCTAGACTCTACTTCGTCGTA
*
107286805 GGTTTTCGTTAATCCTAGACTCTACTTCGTCGT
1 GGTTTTCGTTAACCCTAGACTCTACTTCGTCGT
107286838 CGATTCTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.40
Consensus pattern (34 bp):
GGTTTTCGTTAACCCTAGACTCTACTTCGTCGTA
Found at i:107288014 original size:10 final size:9
Alignment explanation
Indices: 107288000--107288048 Score: 53
Period size: 10 Copynumber: 5.0 Consensus size: 9
107287990 TAAATTCTAA
107288000 AAAATAAAT
1 AAAATAAAT
107288009 ACAAATAAAT
1 A-AAATAAAT
*
107288019 AAAGATAATT
1 AAA-ATAAAT
107288029 AAAGATAAAT
1 AAA-ATAAAT
107288039 GAAAATAAAT
1 -AAAATAAAT
107288049 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 3 0.09
10 29 0.83
11 3 0.09
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.22
Consensus pattern (9 bp):
AAAATAAAT
Found at i:107288098 original size:14 final size:13
Alignment explanation
Indices: 107288062--107288099 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
107288052 AAAATTAAAT
107288062 CTAAATAATTATC
1 CTAAATAATTATC
*
107288075 CTTAATAATTATC
1 CTAAATAATTATC
107288088 CTAATATAATTA
1 CTAA-ATAATTA
107288100 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:107289158 original size:23 final size:22
Alignment explanation
Indices: 107289131--107289179 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
107289121 TTGAACCAAT
*
107289131 TTTTTATAGTTTTTAATATTTTTA
1 TTTTTA-AGTTTTTAATA-ATTTA
*
107289155 TTTTTAATTTTTTAATAATTTA
1 TTTTTAAGTTTTTAATAATTTA
107289177 TTT
1 TTT
107289180 ATTTTGAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 10 0.43
24 6 0.26
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTTAAGTTTTTAATAATTTA
Found at i:107289428 original size:14 final size:15
Alignment explanation
Indices: 107289409--107289441 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
107289399 AGTTTAAAGT
107289409 AAAT-AAAATATTAA
1 AAATAAAAATATTAA
107289423 AAATAAAAATATTAA
1 AAATAAAAATATTAA
107289438 AAAT
1 AAAT
107289442 TGATAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATAAAAATATTAA
Found at i:107289620 original size:25 final size:23
Alignment explanation
Indices: 107289592--107289638 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
107289582 ATTTGTATAT
*
107289592 ATTTAAAATAACTTTTTATTTTTTA
1 ATTTAAAAT-A-TTTTTATATTTTA
*
107289617 ATTTTAAATATTTTTATATTTT
1 ATTTAAAATATTTTTATATTTT
107289639 CATAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 1 0.05
25 8 0.40
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTAAAATATTTTTATATTTTA
Found at i:107289622 original size:26 final size:26
Alignment explanation
Indices: 107289593--107289648 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
107289583 TTTGTATATA
107289593 TTTAAAATAACTTTTTAT-TTTT-TAAT
1 TTTAAAAT-A-TTTTTATATTTTATAAT
107289619 TTT-AAATATTTTTATATTTTCATAAT
1 TTTAAAATATTTTTATATTTT-ATAAT
107289645 TTTA
1 TTTA
107289649 GTTTTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
23 7 0.27
24 5 0.19
25 4 0.15
26 10 0.38
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTAAAATATTTTTATATTTTATAAT
Found at i:107292251 original size:18 final size:18
Alignment explanation
Indices: 107292230--107292272 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
107292220 TCCGGTGAGA
107292230 ATGATGAGGAGTTATCAG
1 ATGATGAGGAGTTATCAG
** *
107292248 ATGATGCTGAGTTTTCAG
1 ATGATGAGGAGTTATCAG
107292266 ATGATGA
1 ATGATGA
107292273 AAAGGAGGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (18 bp):
ATGATGAGGAGTTATCAG
Found at i:107297410 original size:4 final size:4
Alignment explanation
Indices: 107297401--107297431 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
107297391 CTCATCAAAC
107297401 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
107297432 CTTCTTCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:107299101 original size:13 final size:13
Alignment explanation
Indices: 107299083--107299125 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
107299073 TTTAATAATA
107299083 AAATAAAGAAATG
1 AAATAAAGAAATG
107299096 AAATAAAGAAAT-
1 AAATAAAGAAATG
* *
107299108 AAATGAAATAAAAG
1 AAAT-AAAGAAATG
107299122 AAAT
1 AAAT
107299126 GAAAAAGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:107299113 original size:17 final size:18
Alignment explanation
Indices: 107299079--107299125 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
107299069 ATAGTTTAAT
* *
107299079 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
107299097 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
107299114 AATAAAAGAAAT
1 AATAAAAGAAAT
107299126 GAAAAAGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:107299117 original size:9 final size:9
Alignment explanation
Indices: 107299091--107299125 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
107299081 TAAAATAAAG
107299091 AAATGAAAT
1 AAATGAAAT
107299100 AAA-GAAAT
1 AAATGAAAT
107299108 AAATGAAAT
1 AAATGAAAT
*
107299117 AAAAGAAAT
1 AAATGAAAT
107299126 GAAAAAGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:107300887 original size:45 final size:44
Alignment explanation
Indices: 107300823--107300972 Score: 183
Period size: 45 Copynumber: 3.3 Consensus size: 44
107300813 TTGTTACCGC
* *
107300823 TACTGCTACTGTTACCGATTCAGCACTTTGTGTGTCGAATATTTT
1 TACTGTTACTGTTACCGATTC-GCACTTTGTGTGTCGAATATTGT
*
107300868 TACTGTTACTGTTACCGATTCGGCACTATGTGTGTCGAATATTGT
1 TACTGTTACTGTTACCGATTC-GCACTTTGTGTGTCGAATATTGT
* * * * * *
107300913 TACTGTTACCGCTACTGATTCGACATTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCGATTCG-CACTTTGTGTGTCGAATATTGT
*
107300958 TACTGTTACTATTAC
1 TACTGTTACTGTTAC
107300973 TATTCCGAAT
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 1 0.01
45 89 0.99
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (44 bp):
TACTGTTACTGTTACCGATTCGCACTTTGTGTGTCGAATATTGT
Found at i:107301179 original size:18 final size:18
Alignment explanation
Indices: 107301158--107301392 Score: 129
Period size: 18 Copynumber: 12.6 Consensus size: 18
107301148 TAACTGATTA
*
107301158 TTACTGAATAATTAACTG
1 TTACTGAATAATTGACTG
* *
107301176 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
* * * *
107301194 TTACTGAATAACTAAATA
1 TTACTGAATAATTGACTG
* *
107301212 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
107301230 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
107301248 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
107301267 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
107301284 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
107301302 TTACTGGATAACCGATCAATTGA-TCG
1 TTACT-G---A---AT-AATTGACT-G
* * ** *
107301328 ATACTGAATAACTGGTTA
1 TTACTGAATAATTGACTG
* *
107301346 TTATTGAATAATTGATTG
1 TTACTGAATAATTGACTG
*
107301364 TTACTGAATAACTGACTG
1 TTACTGAATAATTGACTG
107301382 TTACTGAATAA
1 TTACTGAATAA
107301393 ATAATTATTC
Statistics
Matches: 167, Mismatches: 32, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
17 15 0.09
18 118 0.71
19 17 0.10
22 2 0.01
25 4 0.02
26 11 0.07
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:107301214 original size:54 final size:53
Alignment explanation
Indices: 107301146--107301313 Score: 178
Period size: 54 Copynumber: 3.1 Consensus size: 53
107301136 AAAGGTATAA
* * * * *
107301146 AATAACTGATTATTACTGAATAATTAACTGTTACCGGATAATTGACTGTTACTG
1 AATAACTAAATATTACTGAATAATTGA-TGTTACTGAATAATTGACTGTTACTG
* * *
107301200 AATAACTAAATATTACTGAATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTAAATATTACTGAATAATTGA-TGTTACTGAAT-AATTGACTGTTACTG
* *
107301254 AATAACTTAATAGTTACTGAAT-ATCTGATTTTACTGAATAATTGACTGTTACTG
1 AATAACTAAATA-TTACTGAATAAT-TGATGTTACTGAATAATTGACTGTTACTG
*
107301308 GATAAC
1 AATAAC
107301314 CGATCAATTG
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
53 2 0.02
54 79 0.83
55 14 0.15
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (53 bp):
AATAACTAAATATTACTGAATAATTGATGTTACTGAATAATTGACTGTTACTG
Found at i:107301390 original size:36 final size:36
Alignment explanation
Indices: 107301146--107301392 Score: 158
Period size: 36 Copynumber: 6.6 Consensus size: 36
107301136 AAAGGTATAA
* * * * *
107301146 AATAACTGATTATTACTGAATAATTAACTGTTACCG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
* * * * * *
107301182 GATAATTGACTGTTACTGAATAACTAAATATTACTG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
* * * *
107301218 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGACTGTTACTGAAT-AATTGATTGTTACTG
* *
107301254 AATAACTTAATAGTTACTGAAT-ATCTGATT-TTACTG
1 AATAACTGACT-GTTACTGAATAAT-TGATTGTTACTG
* * *
107301290 AATAATTGACTGTTACTGGATAACCGATCAATTGATCGATACTG
1 AATAACTGACTGTTACT-G---A---AT-AATTGATTGTTACTG
** * *
107301334 AATAACTGGTTATTATTGAATAATTGATTGTTACTG
1 AATAACTGACTGTTACTGAATAATTGATTGTTACTG
107301370 AATAACTGACTGTTACTGAATAA
1 AATAACTGACTGTTACTGAATAA
107301393 ATAATTATTC
Statistics
Matches: 160, Mismatches: 37, Indels: 28
0.71 0.16 0.12
Matches are distributed among these distances:
35 7 0.04
36 108 0.68
37 17 0.11
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 19 0.12
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (36 bp):
AATAACTGACTGTTACTGAATAATTGATTGTTACTG
Found at i:107307429 original size:20 final size:19
Alignment explanation
Indices: 107307392--107307431 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
107307382 TTATTATCTT
*
107307392 TGAATATTTTTTAGTGTTA
1 TGAATATTTTTAAGTGTTA
*
107307411 TGAATATTTTTGAATTGTTA
1 TGAATATTTTT-AAGTGTTA
107307431 T
1 T
107307432 ATCTAACGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (19 bp):
TGAATATTTTTAAGTGTTA
Found at i:107310798 original size:110 final size:111
Alignment explanation
Indices: 107310590--107310798 Score: 278
Period size: 110 Copynumber: 1.9 Consensus size: 111
107310580 TTTTTTTTTT
* * * *
107310590 TTAATTTTCCTTTCCCATGAAGCTTATCATAATTAATTTTACGCTCTATAGGTTGCCCTGTAGCA
1 TTAATTTTCCTTTCCCATGAAGCTTATCATAATTAATTTTACACTCTATAGGATGCCCTGCAACA
107310655 CAATTAAAAGAGAAAGAAAGAATTAATTATTTTATGTTTCCTATAA
66 CAATTAAAAGAGAAAGAAAGAATTAATTATTTTATGTTTCCTATAA
** * * * *
107310701 TTAATTTT-CTTTTTCATGAAGCTTATCATAATTAATTTTACATTTTA-AGAGATGTCTTGCAAC
1 TTAATTTTCCTTTCCCATGAAGCTTATCATAATTAATTTTACACTCTATAG-GATGCCCTGCAAC
* * *
107310764 ACAATTAAAGGGGAGAGAAAGAATTAATTATTTTA
65 ACAATTAAAAGAGAAAGAAAGAATTAATTATTTTA
107310799 CATTTCTCAT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
109 2 0.02
110 74 0.88
111 8 0.10
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (111 bp):
TTAATTTTCCTTTCCCATGAAGCTTATCATAATTAATTTTACACTCTATAGGATGCCCTGCAACA
CAATTAAAAGAGAAAGAAAGAATTAATTATTTTATGTTTCCTATAA
Found at i:107315475 original size:39 final size:41
Alignment explanation
Indices: 107315401--107315490 Score: 148
Period size: 39 Copynumber: 2.2 Consensus size: 41
107315391 CTAAAAATAT
*
107315401 TTATATTAAAAAACACTACCATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
107315442 TTATATTAAAAAACAC-A-AATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
107315481 TTGTATTAAA
1 TTATATTAAA
107315491 TATAAATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 30 0.64
40 1 0.02
41 16 0.34
ACGTcount: A:0.54, C:0.07, G:0.01, T:0.38
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
Found at i:107316649 original size:41 final size:39
Alignment explanation
Indices: 107316580--107316896 Score: 229
Period size: 41 Copynumber: 7.8 Consensus size: 39
107316570 AATAGGGCTT
107316580 TAGCGGCGTTTTTGGTAAAACGCTGCTAAAAACAGAGCAA
1 TAGCGGCGTTTTTGGTAAAACGC-GCTAAAAACAGAGCAA
* * * *
107316620 TAGCGGCGTTTTTTGTTAAAATGACGCTAAAAGCATAGCAA
1 TAGCGGCG-TTTTTGGTAAAACG-CGCTAAAAACAGAGCAA
** * *
107316661 TAGTTGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCAT
1 TAGCGGCGTTTTTGGTAAAACG-CGCTAAAAA-CAGAGCAA
* * * * * * *
107316702 TAACGGCGCTTTCGGTAAAACGTCACTAAAAATCGGAACAC
1 TAGCGGCGTTTTTGGTAAAACG-CGCTAAAAA-CAGAGCAA
* * * *
107316743 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCAC
1 TAGCGGCGTTTTTGGTAAAACG-CGCTAAAAA-CAGAGCAA
* * * *
107316784 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCGAAGCAT
1 TAGCGGCGTTTTTGGTAAAACG-CGCTAAAAACAG-AGCAA
* * * *
107316825 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCGGAGCAT
1 TAGCGGCGTTTTTGGTAAAACG-CGCTAAAAA-CAGAGCAA
* * * *
107316866 TAGCGGTGCTTTCGATAAAACGCCGCTAAAA
1 TAGCGGCGTTTTTGGTAAAACG-CGCTAAAA
107316897 GTCATATAAC
Statistics
Matches: 241, Mismatches: 31, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
40 29 0.12
41 209 0.87
42 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (39 bp):
TAGCGGCGTTTTTGGTAAAACGCGCTAAAAACAGAGCAA
Found at i:107316764 original size:82 final size:82
Alignment explanation
Indices: 107316580--107316896 Score: 354
Period size: 82 Copynumber: 3.9 Consensus size: 82
107316570 AATAGGGCTT
* * * * * * * * * *
107316580 TAGCGGCGTTTTTGGTAAAACGCTGCTAAAAA-CAGAGCAATAGCGGCGTTTTTTGTTAAAATGA
1 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCATTAGCGGCG-CTTTCGGTAAAACGC
* *
107316644 CGCT-AAAAGC-ATAGCAA
65 CGCTAAAAACCGA-AGCAC
** * * * *
107316661 TAGTTGCGCTTTTGGTAAAACGCCGCTAAAAATCAGAGCATTAACGGCGCTTTCGGTAAAACGTC
1 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTCGGTAAAACGCC
* *
107316726 ACTAAAAATCGGAA-CAC
66 GCTAAAAA-CCGAAGCAC
*
107316743 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCACTAGCGGCGCTTTCGGTAAAACGCC
1 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTCGGTAAAACGCC
*
107316808 GCTAAAAACCGAAGCAT
66 GCTAAAAACCGAAGCAC
* * *
107316825 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCGGAGCATTAGCGGTGCTTTCGATAAAACGCC
1 TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTCGGTAAAACGCC
107316890 GCTAAAA
66 GCTAAAA
107316897 GTCATATAAC
Statistics
Matches: 202, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
81 45 0.22
82 155 0.77
83 1 0.00
84 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (82 bp):
TAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCATTAGCGGCGCTTTCGGTAAAACGCC
GCTAAAAACCGAAGCAC
Found at i:107316815 original size:123 final size:123
Alignment explanation
Indices: 107316666--107316896 Score: 356
Period size: 123 Copynumber: 1.9 Consensus size: 123
107316656 AGCAATAGTT
* *
107316666 GCGCTTTTGGTAAAACGCCGCTAAAAATCAG-AGCATTAACGGCGCTTTCGGTAAAACGTCACTA
1 GCGCTTTCGGTAAAACGCCGCTAAAAA-CAGAAGCATTAACGGCGCTTTCGGTAAAACGCCACTA
* *
107316730 AAAATCGGAACACTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAATCGGAGCACTAGCG
65 AAAACCGGAACACTAGCGGCGCTTTCGATAAAACGCCGCTAAAAATCGGAGCACTAGCG
* * *
107316789 GCGCTTTCGGTAAAACGCCGCTAAAAACCGAAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAA
1 GCGCTTTCGGTAAAACGCCGCTAAAAACAGAAGCATTAACGGCGCTTTCGGTAAAACGCCACTAA
* * *
107316854 AAACCGGAGCATTAGCGGTGCTTTCGATAAAACGCCGCTAAAA
66 AAACCGGAACACTAGCGGCGCTTTCGATAAAACGCCGCTAAAA
107316897 GTCATATAAC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
122 2 0.02
123 95 0.98
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.19
Consensus pattern (123 bp):
GCGCTTTCGGTAAAACGCCGCTAAAAACAGAAGCATTAACGGCGCTTTCGGTAAAACGCCACTAA
AAACCGGAACACTAGCGGCGCTTTCGATAAAACGCCGCTAAAAATCGGAGCACTAGCG
Found at i:107316961 original size:22 final size:23
Alignment explanation
Indices: 107316936--107316985 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
107316926 AAAAAATCAT
* *
107316936 AAATACT-AATCTATAACCCCTA
1 AAATACTAAATCTATAAACACTA
*
107316958 AAATACTAAATCTTTAAACACTA
1 AAATACTAAATCTATAAACACTA
107316981 AAATA
1 AAATA
107316986 TAACCTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.52, C:0.20, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATACTAAATCTATAAACACTA
Found at i:107317302 original size:14 final size:13
Alignment explanation
Indices: 107317262--107317304 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
107317252 ATTTTAAGAT
*
107317262 TTAGGGTTTATGAG
1 TTAGGGTTTA-GGG
*
107317276 TTAGGGTTAAGGG
1 TTAGGGTTTAGGG
107317289 TTAGGAGTTTAGGG
1 TTAGG-GTTTAGGG
107317303 TT
1 TT
107317305 TAGGTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 7 0.28
14 18 0.72
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
TTAGGGTTTAGGG
Found at i:107317492 original size:22 final size:22
Alignment explanation
Indices: 107317439--107317489 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
107317429 ATGGTTAAGG
107317439 GTTTAAGGTTTATGAATTACTA
1 GTTTAAGGTTTATGAATTACTA
* *
107317461 TTTTAAGGTTTATGTATTA-TA
1 GTTTAAGGTTTATGAATTACTA
107317482 GTTTAAGG
1 GTTTAAGG
107317490 GTTGGGGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (22 bp):
GTTTAAGGTTTATGAATTACTA
Found at i:107317565 original size:15 final size:15
Alignment explanation
Indices: 107317547--107317588 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
107317537 TGATTTATAT
*
107317547 TTTAAGATTTTAGGG
1 TTTAAGAGTTTAGGG
107317562 TTT-AGAGTTTAGGG
1 TTTAAGAGTTTAGGG
* *
107317576 ATTAAGGGTTTAG
1 TTTAAGAGTTTAG
107317589 ATTAATTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (15 bp):
TTTAAGAGTTTAGGG
Found at i:107317919 original size:19 final size:19
Alignment explanation
Indices: 107317858--107317919 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
107317848 TTAGATTTAA
107317858 AAAAACATTGATAAATAAAT
1 AAAAACATTGAT-AATAAAT
107317878 -AAAACATTGATAATAAAT
1 AAAAACATTGATAATAAAT
*
107317896 AAAAACATTGATAACAAAT
1 AAAAACATTGATAATAAAT
107317915 AAAAA
1 AAAAA
107317920 TGAAGTACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
18 7 0.17
19 33 0.82
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAAACATTGATAATAAAT
Found at i:107317964 original size:15 final size:15
Alignment explanation
Indices: 107317944--107317995 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
107317934 AAAAATGCAA
107317944 TATGGGTTTATGGAT
1 TATGGGTTTATGGAT
*
107317959 TATGGGTTTAGGGAT
1 TATGGGTTTATGGAT
* *
107317974 TAT-GATTTATGGTT
1 TATGGGTTTATGGAT
*
107317988 TAAGGGTT
1 TATGGGTT
107317996 GGGGTTTAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (15 bp):
TATGGGTTTATGGAT
Found at i:107319084 original size:62 final size:62
Alignment explanation
Indices: 107319014--107319142 Score: 197
Period size: 62 Copynumber: 2.1 Consensus size: 62
107319004 CTTCCTTTAA
107319014 TTTTCAATCGTCTTAAAATTTTAGA-AATTTTAATTTGGGTTTCTTATTTTCTATTATATTAG
1 TTTTCAATCGTCTTAAAATTTTAGATAATTTTAATTTGGGTTTCTTA-TTTCTATTATATTAG
* ** **
107319076 TTTTCAATCGTCTTAAAATTTTTGATTTTTTTTGTTTGGGTTTCTTATTTCTATTATATTAG
1 TTTTCAATCGTCTTAAAATTTTAGATAATTTTAATTTGGGTTTCTTATTTCTATTATATTAG
107319138 TTTTC
1 TTTTC
107319143 TAGTTTCCTG
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 44 0.72
63 17 0.28
ACGTcount: A:0.22, C:0.09, G:0.10, T:0.59
Consensus pattern (62 bp):
TTTTCAATCGTCTTAAAATTTTAGATAATTTTAATTTGGGTTTCTTATTTCTATTATATTAG
Found at i:107322332 original size:23 final size:23
Alignment explanation
Indices: 107322302--107322403 Score: 168
Period size: 23 Copynumber: 4.4 Consensus size: 23
107322292 TGGTTGCTGC
107322302 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
107322325 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
107322348 TGTTTAAATGTTGTAAACTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
**
107322371 AATTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
107322394 TGTTTAAATG
1 TGTTTAAATG
107322404 TTCTTTGTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Done.