Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 348 of 410
Found at i:107322936 original size:43 final size:43
Alignment explanation
Indices: 107322875--107323064 Score: 299
Period size: 43 Copynumber: 4.4 Consensus size: 43
107322865 ATATATATGG
* *
107322875 TCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTATAGGTTACGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTATAGGTCACGA
107322918 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTATAGGTCACGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTATAGGTCACGA
* * *
107322961 TCTTTAGTGGCGTTTTTGGGGAAAGCGTCGCTATAGGCCACGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTATAGGTCACGA
* *
107323004 TCTTTAGCGGCATTTTTGGGGAAAGCGCCGCTAAAGGTCACGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTATAGGTCACGA
* *
107323047 TCTTTAGTGACGTTTTTG
1 TCTTTAGCGGCGTTTTTG
107323065 AGAAAAAAAG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 134 1.00
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.32
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTATAGGTCACGA
Found at i:107330407 original size:6 final size:6
Alignment explanation
Indices: 107330391--107330428 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
107330381 GTTTCTCAAA
*
107330391 AAAATG GAAATG AAAATG AAAATG AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A
107330429 TTTATTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:107333960 original size:37 final size:41
Alignment explanation
Indices: 107333874--107333960 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 41
107333864 AAAAAGTAGC
*
107333874 TATATTAAAAAACACTACCATAAATATAAGAAATATTTTAT
1 TATATTAAAAAACACTACAATAAATATAAGAAATATTTTAT
*
107333915 TATATTAAAAAACAC-A-AATAAATATAA-TAATA-TTTAT
1 TATATTAAAAAACACTACAATAAATATAAGAAATATTTTAT
*
107333952 TGTATTAAA
1 TATATTAAA
107333961 TATAATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
37 13 0.30
38 4 0.09
39 10 0.23
40 1 0.02
41 15 0.35
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (41 bp):
TATATTAAAAAACACTACAATAAATATAAGAAATATTTTAT
Found at i:107340502 original size:25 final size:25
Alignment explanation
Indices: 107340437--107340512 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
107340427 TTTGGGAATG
*
107340437 CTCATATGAGCACATA-AACGAGAAG
1 CTCATATGAGC-CATATAACGAGAAA
* *
107340462 CTCTCTCTTGAGCCATATAACGAGAAA
1 CTC-AT-ATGAGCCATATAACGAGAAA
*
107340489 CTCATATGAGCCATGTAACG-GAAA
1 CTCATATGAGCCATATAACGAGAAA
107340513 GCTTATCCGG
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
24 4 0.10
25 16 0.38
26 6 0.14
27 16 0.38
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (25 bp):
CTCATATGAGCCATATAACGAGAAA
Found at i:107340612 original size:74 final size:75
Alignment explanation
Indices: 107340534--107340713 Score: 182
Period size: 74 Copynumber: 2.4 Consensus size: 75
107340524 CTGTATAACA
* * * * * *
107340534 GGAAGCTCATGCGAGCCAATAACGGGTAGCTCCAAAGAACCATTAATTAGGAAGCTC-CGAATAG
1 GGAAGCTCATGAGAGCCAATAACGGGAAGCTCCAAAGAACCATTAATCAAGAAGCTCACAAAGAG
107340598 CCACAAATCG
66 CCACAAATCG
* * * ** *
107340608 GGAAGTTCAAGAGAGCCAATATCGGGAAGCTCCGGAGAGCCATTAATCAAGAAGCTCACAAAGAG
1 GGAAGCTCATGAGAGCCAATAACGGGAAGCTCCAAAGAACCATTAATCAAGAAGCTCACAAAGAG
***
107340673 CCTTTAATCG
66 CCACAAATCG
* *
107340683 GGAAGCTCATGAAAAGCCATATAGCGGGAAG
1 GGAAGCTCATG-AGAGCCA-ATAACGGGAAG
107340714 TTTATAAGAG
Statistics
Matches: 84, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
74 47 0.56
75 21 0.25
76 6 0.07
77 10 0.12
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.16
Consensus pattern (75 bp):
GGAAGCTCATGAGAGCCAATAACGGGAAGCTCCAAAGAACCATTAATCAAGAAGCTCACAAAGAG
CCACAAATCG
Found at i:107340645 original size:24 final size:25
Alignment explanation
Indices: 107340583--107340649 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 25
107340573 CCATTAATTA
* *
107340583 GGAAGCTCCGAATAGCCACAAATCG
1 GGAAGCTCCGGAGAGCCACAAATCG
* ** *
107340608 GGAAGTTCAAGAGAGCCA-ATATCG
1 GGAAGCTCCGGAGAGCCACAAATCG
107340632 GGAAGCTCCGGAGAGCCA
1 GGAAGCTCCGGAGAGCCA
107340650 TTAATCAAGA
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
24 20 0.61
25 13 0.39
ACGTcount: A:0.34, C:0.24, G:0.30, T:0.12
Consensus pattern (25 bp):
GGAAGCTCCGGAGAGCCACAAATCG
Found at i:107344422 original size:2 final size:2
Alignment explanation
Indices: 107344417--107344442 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
107344407 TTTTTTTTAA
107344417 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
107344443 TAGATACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107347403 original size:30 final size:28
Alignment explanation
Indices: 107347346--107347410 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 28
107347336 GTGGCATTAG
**
107347346 AAATTTAGTCTTTTATTTTTATTTTTAA
1 AAATTTAGTCTTTTATTTTTAGATTTAA
*
107347374 GAATTTAGTCTTTCTATTTTTTAGATTTAA
1 AAATTTAGTCTTT-TA-TTTTTAGATTTAA
107347404 AAATTTA
1 AAATTTA
107347411 AATTTAGTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 12 0.39
29 2 0.06
30 17 0.55
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.58
Consensus pattern (28 bp):
AAATTTAGTCTTTTATTTTTAGATTTAA
Found at i:107349098 original size:22 final size:21
Alignment explanation
Indices: 107349041--107349099 Score: 52
Period size: 22 Copynumber: 2.8 Consensus size: 21
107349031 CTTATAAAGT
107349041 AGTTCCAGATTCAGA-T-ATTC
1 AGTT-CAGATTCAGATTAATTC
* *
107349061 GGTTC-GATACATGATTAATTTC
1 AGTTCAGATTCA-GATTAA-TTC
107349083 AGTTCAGATTCAGATTA
1 AGTTCAGATTCAGATTA
107349100 GGTCAGTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
18 5 0.17
19 3 0.10
20 4 0.13
21 1 0.03
22 12 0.40
23 5 0.17
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (21 bp):
AGTTCAGATTCAGATTAATTC
Found at i:107354034 original size:21 final size:22
Alignment explanation
Indices: 107353996--107354036 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
107353986 ACTTCCAACT
**
107353996 CCCTCAAATCTCTCCTACTAAC
1 CCCTCAAATCTCAACTACTAAC
107354018 CCCTC-AATCTCAACTACTA
1 CCCTCAAATCTCAACTACTA
107354037 CAGAATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (22 bp):
CCCTCAAATCTCAACTACTAAC
Found at i:107367997 original size:31 final size:30
Alignment explanation
Indices: 107367945--107368020 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
107367935 TAGTTTATAT
* *
107367945 TTTTATAATTTTTAAAAAATTAAATTAAAA
1 TTTTATCATTTTTAAAAAATTAAAATAAAA
*
107367975 TTTTATCATTTTTAAAAGAATTAAAATACAA
1 TTTTATCATTTTTAAAA-AATTAAAATAAAA
107368006 TTTTATC-TTTATTAA
1 TTTTATCATTT-TTAA
107368021 TTTAAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
30 19 0.46
31 22 0.54
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (30 bp):
TTTTATCATTTTTAAAAAATTAAAATAAAA
Found at i:107369565 original size:2 final size:2
Alignment explanation
Indices: 107369558--107369597 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
107369548 GTTTAATGAA
107369558 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107369598 TTCTTGATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107371594 original size:63 final size:63
Alignment explanation
Indices: 107371526--107371650 Score: 171
Period size: 63 Copynumber: 2.0 Consensus size: 63
107371516 AACCTACTAT
* * *
107371526 TCATGAATTAGAG-TCACGCAGGCTAGGGACACGAACGTGTGTCCAGGCCGTGTAACTCACTGA
1 TCATGAATTAGAGAT-ACACAGGCCAGAGACACGAACGTGTGTCCAGGCCGTGTAACTCACTGA
* * **
107371589 TCATGACTTAGAGATACACAGGCCAGAGACATGGGCGTGTGTCCAGGCCGTGTAACTCACTG
1 TCATGAATTAGAGATACACAGGCCAGAGACACGAACGTGTGTCCAGGCCGTGTAACTCACTG
107371651 TTTTCGTATT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (63 bp):
TCATGAATTAGAGATACACAGGCCAGAGACACGAACGTGTGTCCAGGCCGTGTAACTCACTGA
Found at i:107373684 original size:2 final size:2
Alignment explanation
Indices: 107373677--107373703 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107373667 TTTCAACCCA
107373677 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
107373704 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:107374212 original size:42 final size:42
Alignment explanation
Indices: 107374150--107374342 Score: 190
Period size: 42 Copynumber: 4.6 Consensus size: 42
107374140 GTCCGAAGGC
* * *
107374150 TGAATAGAAGCTCATGAGAGCTAAACAAAAACCTATAAGGGT
1 TGAATAGAAGCTCGTAAGAGCTAAACAGAAACCTATAAGGGT
* *
107374192 TGAATGGAAGCTTGTAAGAGCTAAACAGAAACCTATAAGGGT
1 TGAATAGAAGCTCGTAAGAGCTAAACAGAAACCTATAAGGGT
* * *
107374234 TGAATAGAAGCTCGTAAGAGCTGAATAGAAACCCATAAGGGT
1 TGAATAGAAGCTCGTAAGAGCTAAACAGAAACCTATAAGGGT
* * ** * * * *
107374276 TAAACAGAAGCTCAAAAGAGCTGAACGGAAA-CTCATATGAGT
1 TGAATAGAAGCTCGTAAGAGCTAAACAGAAACCT-ATAAGGGT
* * * *
107374318 TAAACAGAAGCTTGTGAGAGCTAAA
1 TGAATAGAAGCTCGTAAGAGCTAAA
107374343 TGGTAAGTAA
Statistics
Matches: 126, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
41 1 0.01
42 125 0.99
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (42 bp):
TGAATAGAAGCTCGTAAGAGCTAAACAGAAACCTATAAGGGT
Found at i:107374242 original size:21 final size:21
Alignment explanation
Indices: 107374178--107374276 Score: 65
Period size: 21 Copynumber: 4.7 Consensus size: 21
107374168 AGCTAAACAA
*
107374178 AAACCTATAAGGGTTGAATGG
1 AAACCTATAAGGGTTGAATAG
* * * * * * *
107374199 AAGCTTGTAAGAGCTAAACAG
1 AAACCTATAAGGGTTGAATAG
107374220 AAACCTATAAGGGTTGAATAG
1 AAACCTATAAGGGTTGAATAG
* * * *
107374241 -AAGCTCGTAAGAGCTGAATAG
1 AAACCT-ATAAGGGTTGAATAG
*
107374262 AAACCCATAAGGGTT
1 AAACCTATAAGGGTT
107374277 AAACAGAAGC
Statistics
Matches: 52, Mismatches: 24, Indels: 4
0.65 0.30 0.05
Matches are distributed among these distances:
20 4 0.08
21 45 0.87
22 3 0.06
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.21
Consensus pattern (21 bp):
AAACCTATAAGGGTTGAATAG
Found at i:107374284 original size:21 final size:21
Alignment explanation
Indices: 107374213--107374284 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
107374203 TTGTAAGAGC
*
107374213 TAAACAGAAACCTATAAGGGT
1 TAAACAGAAACCCATAAGGGT
* * * * * * *
107374234 TGAATAGAAGCTCGTAAGAGC
1 TAAACAGAAACCCATAAGGGT
* *
107374255 TGAATAGAAACCCATAAGGGT
1 TAAACAGAAACCCATAAGGGT
107374276 TAAACAGAA
1 TAAACAGAA
107374285 GCTCAAAAGA
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.18
Consensus pattern (21 bp):
TAAACAGAAACCCATAAGGGT
Found at i:107389677 original size:26 final size:26
Alignment explanation
Indices: 107389623--107389697 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
107389613 TGGTCCCTAT
* *
107389623 ATTTCTTTTTCATTTTGAGTAATTT--A
1 ATTTCTTTTTC-TTTT-ATTTATTTGAA
107389649 ATTT-TTTTTCTTTTATGTTATTTGAA
1 ATTTCTTTTTCTTTTAT-TTATTTGAA
* *
107389675 ATTTCTTTTTTTTTTCTTTATTT
1 ATTTCTTTTTCTTTTATTTATTT
107389698 TCCATTCTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.02
24 9 0.22
25 6 0.15
26 15 0.37
27 10 0.24
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (26 bp):
ATTTCTTTTTCTTTTATTTATTTGAA
Found at i:107390639 original size:27 final size:26
Alignment explanation
Indices: 107390609--107390666 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
107390599 CATATCAACG
*
107390609 TTTTTGAGTTGGAATGTTGAAAACTAC
1 TTTTT-AGTTCGAATGTTGAAAACTAC
**
107390636 TTTTTCTTTCGAATGTTGAAAACTAC
1 TTTTTAGTTCGAATGTTGAAAACTAC
107390662 TTTTT
1 TTTTT
107390667 CTTTCAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (26 bp):
TTTTTAGTTCGAATGTTGAAAACTAC
Found at i:107390666 original size:26 final size:26
Alignment explanation
Indices: 107390620--107390671 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
107390610 TTTTGAGTTG
107390620 GAATGTTGAAAACTACTTTTTCTTTC
1 GAATGTTGAAAACTACTTTTTCTTTC
107390646 GAATGTTGAAAACTACTTTTTCTTTC
1 GAATGTTGAAAACTACTTTTTCTTTC
107390672 AATATTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (26 bp):
GAATGTTGAAAACTACTTTTTCTTTC
Found at i:107392775 original size:20 final size:20
Alignment explanation
Indices: 107392747--107392789 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
107392737 GTGATAACAG
*
107392747 TTTTCGAAAAATAAATATTT
1 TTTTAGAAAAATAAATATTT
**
107392767 TTTTAGAAAAATTGATATTT
1 TTTTAGAAAAATAAATATTT
107392787 TTT
1 TTT
107392790 AATATTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (20 bp):
TTTTAGAAAAATAAATATTT
Found at i:107393283 original size:17 final size:19
Alignment explanation
Indices: 107393252--107393295 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
107393242 ATTGAAATTG
*
107393252 TAAAATTAAATAATT-TAT
1 TAAAATTAAAAAATTGTAT
107393270 TAAAA-TAAAAAATTGTAT
1 TAAAATTAAAAAATTGTAT
107393288 TAATAATT
1 TAA-AATT
107393296 TTTTATAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 8 0.36
18 11 0.50
19 2 0.09
20 1 0.05
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (19 bp):
TAAAATTAAAAAATTGTAT
Found at i:107394592 original size:12 final size:12
Alignment explanation
Indices: 107394566--107394609 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
107394556 AAAGTCAAAA
*
107394566 TTTAAAA-AGAT
1 TTTAAAATAAAT
107394577 TTTAAAATAAAT
1 TTTAAAATAAAT
107394589 TTTAAAATAAAT
1 TTTAAAATAAAT
107394601 TTTAAAATA
1 TTTAAAATA
107394610 CAATCCCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 7 0.23
12 24 0.77
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (12 bp):
TTTAAAATAAAT
Found at i:107395014 original size:128 final size:130
Alignment explanation
Indices: 107394867--107395101 Score: 384
Period size: 129 Copynumber: 1.8 Consensus size: 130
107394857 GCCTTATTTT
* * * *
107394867 AGAATTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTA-TTTGAACAAACGGGAAATT
1 AGAATTTAGAAAACATGAGTGAAATTCCAAAAGAATATTCGATCATTTTGAACAAACGAGAAATT
107394931 GCAACCCAGCACGATAGGGCATGATTCC-CGAATTTCTAAACTTCGAACGTTGCCTTCGTTTTAA
66 GCAACCCAGCACGATAGGGCATGATTCCTCGAATTTCTAAACTTCGAACGTTGCCTTCGTTTTAA
**
107394995 AGAATTTTTAAAACATGAGTGAAATTCCAAAAGAATATTCGATCATTTTGAACAAACGAGAAATT
1 AGAATTTAGAAAACATGAGTGAAATTCCAAAAGAATATTCGATCATTTTGAACAAACGAGAAATT
* *
107395060 GTAACCCAGCACGATAGGGCATGATTCCTTGAATTTCTAAAC
66 GCAACCCAGCACGATAGGGCATGATTCCTCGAATTTCTAAAC
107395102 ATCAAACATC
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
128 40 0.41
129 45 0.46
130 12 0.12
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (130 bp):
AGAATTTAGAAAACATGAGTGAAATTCCAAAAGAATATTCGATCATTTTGAACAAACGAGAAATT
GCAACCCAGCACGATAGGGCATGATTCCTCGAATTTCTAAACTTCGAACGTTGCCTTCGTTTTAA
Found at i:107396047 original size:30 final size:30
Alignment explanation
Indices: 107396011--107396069 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
107396001 CTTGAAAGGT
* *
107396011 ATATATAT-AAAATAGTTTAAGATAAATAAC
1 ATATATATGAAAATA-TTGAAAATAAATAAC
107396041 ATATATATGAAAATATTGAAAATAAATAA
1 ATATATATGAAAATATTGAAAATAAATAA
107396070 TACGTCGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (30 bp):
ATATATATGAAAATATTGAAAATAAATAAC
Found at i:107396457 original size:3 final size:3
Alignment explanation
Indices: 107396441--107396499 Score: 100
Period size: 3 Copynumber: 19.3 Consensus size: 3
107396431 AACGACGACG
*
107396441 ATA ATGA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107396487 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
107396500 CATAAATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:107396764 original size:30 final size:31
Alignment explanation
Indices: 107396717--107396775 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
107396707 TCCAAAAAAA
*
107396717 AAAAACAATTATAATAAAGAAAACGAAATATT
1 AAAAACAATTATAATAAACAAAAC-AAATATT
107396749 AAAAA-AATTA-AATAAACAAAACAAATA
1 AAAAACAATTATAATAAACAAAACAAATA
107396776 GCTAAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.19
30 11 0.42
31 5 0.19
32 5 0.19
ACGTcount: A:0.71, C:0.07, G:0.03, T:0.19
Consensus pattern (31 bp):
AAAAACAATTATAATAAACAAAACAAATATT
Found at i:107397650 original size:16 final size:16
Alignment explanation
Indices: 107397629--107397661 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
107397619 TATTCTCCAA
107397629 AAAGAACCCCCCTTTT
1 AAAGAACCCCCCTTTT
107397645 AAAGAACCCCCCTTTT
1 AAAGAACCCCCCTTTT
107397661 A
1 A
107397662 CATGGTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.06, T:0.24
Consensus pattern (16 bp):
AAAGAACCCCCCTTTT
Found at i:107398373 original size:44 final size:44
Alignment explanation
Indices: 107398323--107398410 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
107398313 TCTTAACAGT
*
107398323 AACATCTAGGCGACACTTAGGATAATAAACACTCTAACTATCAA
1 AACATCTAGGCAACACTTAGGATAATAAACACTCTAACTATCAA
*
107398367 AACATCTAGGCAACACTTAGGATAATAAACACTCTGACTATCAA
1 AACATCTAGGCAACACTTAGGATAATAAACACTCTAACTATCAA
107398411 GCTAACATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (44 bp):
AACATCTAGGCAACACTTAGGATAATAAACACTCTAACTATCAA
Found at i:107401764 original size:13 final size:13
Alignment explanation
Indices: 107401723--107401757 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
107401713 CATCAAGAAT
*
107401723 AAATTAAGA-ATA
1 AAATTAAAATATA
107401735 AAATTAAAATATA
1 AAATTAAAATATA
107401748 AAATTAAAAT
1 AAATTAAAAT
107401758 TGTAAATCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 8 0.38
13 13 0.62
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AAATTAAAATATA
Found at i:107401790 original size:72 final size:72
Alignment explanation
Indices: 107401670--107401814 Score: 218
Period size: 72 Copynumber: 2.0 Consensus size: 72
107401660 AATAATATTT
* * * * *
107401670 AATATAAAATTAGAACTATAAATTAGGATTTATCATATCAAATCATCAAGAATAAATTAAGAATA
1 AATATAAAATTAAAACTATAAATCAGGATGTATCATATCAAATAATCAAGAATAAATTAAGAACA
107401735 AAATTAA
66 AAATTAA
* * *
107401742 AATATAAAATTAAAATTGTAAATCAGGATGTATCATGTCAAATAATCAAGAATAAATTAAGAACA
1 AATATAAAATTAAAACTATAAATCAGGATGTATCATATCAAATAATCAAGAATAAATTAAGAACA
107401807 AAATTAA
66 AAATTAA
107401814 A
1 A
107401815 TGCGGAAACA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (72 bp):
AATATAAAATTAAAACTATAAATCAGGATGTATCATATCAAATAATCAAGAATAAATTAAGAACA
AAATTAA
Found at i:107402575 original size:22 final size:22
Alignment explanation
Indices: 107402550--107402603 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
107402540 TGAATAAACC
107402550 AAATAAACTTTATTTCTACAGA
1 AAATAAACTTTATTTCTACAGA
107402572 AAATAAACTTTATTTCTACAGA
1 AAATAAACTTTATTTCTACAGA
107402594 AAATAAACTT
1 AAATAAACTT
107402604 AATATCCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (22 bp):
AAATAAACTTTATTTCTACAGA
Found at i:107408958 original size:30 final size:30
Alignment explanation
Indices: 107408863--107408959 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
107408853 AGCTCACTCC
*
107408863 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
107408893 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
107408923 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
107408953 TAGCTCA
1 TAGCTCA
107408960 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:107411919 original size:43 final size:42
Alignment explanation
Indices: 107411841--107411954 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
107411831 ACTAAGATTA
* * *
107411841 CGTGTAAGATCATATCTGAGATATGGCATCGATACGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCAATACGAGACTT
* * *
107411883 CGTGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGATTT
1 CGTGTAAGACCATATCTGGGATA-TGGCATCAATACGAGACTT
* *
107411926 CATGTAAGACCATATCTGGGATATAGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
107411955 TGATATGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 24 0.39
43 37 0.61
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCAATACGAGACTT
Found at i:107419782 original size:11 final size:11
Alignment explanation
Indices: 107419766--107419790 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
107419756 AAAAATGTAA
107419766 AAACTAATATT
1 AAACTAATATT
107419777 AAACTAATATT
1 AAACTAATATT
107419788 AAA
1 AAA
107419791 AGAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:107421304 original size:333 final size:333
Alignment explanation
Indices: 107420698--107421360 Score: 1245
Period size: 333 Copynumber: 2.0 Consensus size: 333
107420688 ACCAAGGCAA
*
107420698 AACTGGACCGTTCCAGGATTGTCGAAGTTTGTCATGATGTTGCGTGATATTCGTGACAGGTTTTA
1 AACTGGACCGTTCCAGGATCGTCGAAGTTTGTCATGATGTTGCGTGATATTCGTGACAGGTTTTA
*
107420763 AATATTTATAATGAATCATTCTTGAAACTAACTATTATCACGATAAAGGCAAGTGTACTTATCGA
66 AATATTTATAATGAATCATTCTTGAAACTAACTATTATCACGATAAAGGCAAGTGTACTTATCAA
107420828 ACAATAGTATAATTTTAGCAACACCGGATTGTCAAACCCAAAGAAACTAAAAGCACTAGTAATAA
131 ACAATAGTATAATTTTAGCAACACCGGATTGTCAAACCCAAAGAAACTAAAAGCACTAGTAATAA
107420893 CTTTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTGTATTAACTAACTAATTAACTAAACTA
196 CTTTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTGTATTAACTAACTAATTAACTAAACTA
107420958 AGAAATTACAGAAAATAGAATTGGGGAATTACTTTTCGGAAAAATAATTGAATCAAGACAATACC
261 AGAAATTACAGAAAATAGAATTGGGGAATTACTTTTCGGAAAAATAATTGAATCAAGACAATACC
107421023 TAAGGCGG
326 TAAGGCGG
107421031 AACTGGACCGTTCCAGGATCGTCGAAGTTTGTCATGATGTTGCGTGATATTCGTGACAGGTTTTA
1 AACTGGACCGTTCCAGGATCGTCGAAGTTTGTCATGATGTTGCGTGATATTCGTGACAGGTTTTA
* * *
107421096 AATATTTATAATGAATCGTTCTTGAAACTAACTATTATCATGATGAAGGCAAGTGTACTTATCAA
66 AATATTTATAATGAATCATTCTTGAAACTAACTATTATCACGATAAAGGCAAGTGTACTTATCAA
* * *
107421161 ACAATAGTATAATTTTAGCAACATCGGATTGTCGAACCCAAAGAAACTAAAAGCATTAGTAATAA
131 ACAATAGTATAATTTTAGCAACACCGGATTGTCAAACCCAAAGAAACTAAAAGCACTAGTAATAA
107421226 CTTTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTGTATTAACTAACTAATTAACTAAACTA
196 CTTTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTGTATTAACTAACTAATTAACTAAACTA
*
107421291 AGAAATTACAGAAAATAGAATTGGGGAATTACTTTTCGGAAAAATGATTGAATCAAGACAATACC
261 AGAAATTACAGAAAATAGAATTGGGGAATTACTTTTCGGAAAAATAATTGAATCAAGACAATACC
107421356 TAAGG
326 TAAGG
107421361 AAAAAATCCA
Statistics
Matches: 321, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
333 321 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (333 bp):
AACTGGACCGTTCCAGGATCGTCGAAGTTTGTCATGATGTTGCGTGATATTCGTGACAGGTTTTA
AATATTTATAATGAATCATTCTTGAAACTAACTATTATCACGATAAAGGCAAGTGTACTTATCAA
ACAATAGTATAATTTTAGCAACACCGGATTGTCAAACCCAAAGAAACTAAAAGCACTAGTAATAA
CTTTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTGTATTAACTAACTAATTAACTAAACTA
AGAAATTACAGAAAATAGAATTGGGGAATTACTTTTCGGAAAAATAATTGAATCAAGACAATACC
TAAGGCGG
Found at i:107426305 original size:55 final size:53
Alignment explanation
Indices: 107426171--107426310 Score: 147
Period size: 55 Copynumber: 2.6 Consensus size: 53
107426161 TCGCTTCTCC
* * * **
107426171 CACGCCCGTGTTGTTTTGGCAGTTTCGCCCATGGTTGCTTGGTACGGGTGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCG-CCACGGTT-CTTGGCACGGGCATGTCG
** **
107426226 CACGCCCGTGTTAATTTGATAGGTTCAGCCACGGTT-TTAAGGCACGGGCATGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTC-GCCACGGTTCTT--GGCACGGGCATGTCG
107426281 CACGCCCGTGTTGTTTTGGCAGGTTCGCCA
1 CACGCCCGTGTTGTTTTGGCAGGTTCGCCA
107426311 AAGGCCATGT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
53 2 0.03
54 4 0.06
55 62 0.90
56 1 0.01
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.31
Consensus pattern (53 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGCCACGGTTCTTGGCACGGGCATGTCG
Found at i:107447351 original size:2 final size:2
Alignment explanation
Indices: 107447340--107447373 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
107447330 TGTTGGTAAG
107447340 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107447374 TATGTTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107450192 original size:19 final size:21
Alignment explanation
Indices: 107450163--107450206 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
107450153 TTATGTTATG
**
107450163 TTAACAATTAACTAAT-TTTT
1 TTAACAATTAAAAAATATTTT
107450183 TTAA-AATTAAAAAATATTTT
1 TTAACAATTAAAAAATATTTT
107450203 TTAA
1 TTAA
107450207 TCTTTAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAACAATTAAAAAATATTTT
Found at i:107451096 original size:30 final size:30
Alignment explanation
Indices: 107451060--107451126 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
107451050 ATAGGGCAGA
*
107451060 CCGTGTGTCACATACGGTCTAGATACAAGC
1 CCGTGTGTCACATACGGTCTAGACACAAGC
* *
107451090 CTGTGTGTCACATACGGTCTAGACACACGC
1 CCGTGTGTCACATACGGTCTAGACACAAGC
107451120 CCGTGTG
1 CCGTGTG
107451127 CCTACCCGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.24
Consensus pattern (30 bp):
CCGTGTGTCACATACGGTCTAGACACAAGC
Found at i:107457802 original size:13 final size:13
Alignment explanation
Indices: 107457784--107457810 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
107457774 CGCATAAAAC
107457784 AAACAATTTTATA
1 AAACAATTTTATA
107457797 AAACAATTTTATA
1 AAACAATTTTATA
107457810 A
1 A
107457811 GTGCGGCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
AAACAATTTTATA
Found at i:107461361 original size:42 final size:43
Alignment explanation
Indices: 107461282--107461373 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
107461272 TCCCGAACGT
* *
107461282 GGTCTTACATGTAATTCAATATCGATGCCTTTGTCCCAGACAG
1 GGTCTTACATGAAATTCAATATCGATGCCTATGTCCCAGACAG
*
107461325 GGTCTTACATGAAATT-AGATA-CGATG-CTGATGTCCCAGACAT
1 GGTCTTACATGAAATTCA-ATATCGATGCCT-ATGTCCCAGACAG
107461367 GGTCTTA
1 GGTCTTA
107461374 TACGTAAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
41 2 0.05
42 24 0.55
43 18 0.41
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (43 bp):
GGTCTTACATGAAATTCAATATCGATGCCTATGTCCCAGACAG
Found at i:107466048 original size:19 final size:19
Alignment explanation
Indices: 107466026--107466088 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
107466016 ACACATAAGT
*
107466026 GCTAAACGGAAGCCCGGAG
1 GCTAAACGGAAGCCCGAAG
* **
107466045 GCT-AACTGAAGCACATAAG
1 GCTAAACGGAAGC-CCGAAG
107466064 TGCTAAACGGAAGCCCGAAG
1 -GCTAAACGGAAGCCCGAAG
107466084 GCTAA
1 GCTAA
107466089 CTGAAGCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 8 0.24
19 11 0.32
20 7 0.21
21 8 0.24
ACGTcount: A:0.37, C:0.24, G:0.29, T:0.11
Consensus pattern (19 bp):
GCTAAACGGAAGCCCGAAG
Found at i:107466070 original size:39 final size:39
Alignment explanation
Indices: 107465969--107466095 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
107465959 AGCACGACAT
* *
107465969 CTAACTGAAGCACATAAGTGCTAAACAGAAGCCTGGAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGG
* *
107466008 CTAA-AGAAACACATAAGTGCTAAACGGAAGCCCGGAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGG
*
107466046 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGG
107466085 CTAACTGAAGC
1 CTAACTGAAGC
107466096 TCATCAAAGC
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 34 0.43
39 46 0.57
ACGTcount: A:0.39, C:0.22, G:0.25, T:0.13
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGG
Found at i:107468635 original size:37 final size:37
Alignment explanation
Indices: 107468537--107468654 Score: 152
Period size: 36 Copynumber: 3.2 Consensus size: 37
107468527 ATTCCAACTG
*
107468537 AAACACACTAGATGCTCATAAGAGCTAATCCATCC-A
1 AAACACACTAGATGCTCATAAGAGCTAGTCCATCCGA
*
107468573 AAACACACTAGATGCTCATACGAGCTAGTCCATCCGA
1 AAACACACTAGATGCTCATAAGAGCTAGTCCATCCGA
* * *
107468610 TAACACACTA-ATGGCTCCA-AAGAGCTAGTCTAACCGA
1 AAACACACTAGAT-GCT-CATAAGAGCTAGTCCATCCGA
107468647 AAACACAC
1 AAACACAC
107468655 CAAAACAAAG
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
36 35 0.49
37 35 0.49
38 2 0.03
ACGTcount: A:0.40, C:0.29, G:0.14, T:0.18
Consensus pattern (37 bp):
AAACACACTAGATGCTCATAAGAGCTAGTCCATCCGA
Found at i:107471368 original size:12 final size:12
Alignment explanation
Indices: 107471347--107471381 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
107471337 TGAATCTGTT
*
107471347 ATCTGAATCTGG
1 ATCTGTATCTGG
*
107471359 ATCTGTATCTGT
1 ATCTGTATCTGG
107471371 ATCTGTATCTG
1 ATCTGTATCTG
107471382 ACTGTGTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (12 bp):
ATCTGTATCTGG
Found at i:107471369 original size:18 final size:19
Alignment explanation
Indices: 107471333--107471381 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
107471323 GCATATCGTA
107471333 AATCTGAATCTGTTATCTG
1 AATCTGAATCTGTTATCTG
*
107471352 AATCTGGATCTG-TATCTG
1 AATCTGAATCTGTTATCTG
* *
107471370 TATCTGTATCTG
1 AATCTGAATCTG
107471382 ACTGTGTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 16 0.59
19 11 0.41
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (19 bp):
AATCTGAATCTGTTATCTG
Found at i:107479151 original size:34 final size:34
Alignment explanation
Indices: 107479099--107479209 Score: 150
Period size: 34 Copynumber: 3.3 Consensus size: 34
107479089 GAAGTAAATA
* *
107479099 AATATATAAGTATGGCTTGGCATAATCGAAGGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
* * *
107479133 ATTATATATGTATAGCTTGGTATAATCGAAAGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
* * *
107479167 AATATATATGTATGGTTTGATATAACCGAAGGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
107479201 AATATATAT
1 AATATATAT
107479210 ACATTTTTTT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (34 bp):
AATATATATGTATGGCTTGGTATAATCGAAGGTG
Found at i:107486308 original size:34 final size:34
Alignment explanation
Indices: 107486268--107486378 Score: 168
Period size: 34 Copynumber: 3.3 Consensus size: 34
107486258 GAAGTACATA
*
107486268 AATATATATGTATGGCTTGGCATAATCGAAGGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
* * *
107486302 ATTATATATGTATAGCTTGGTATAATCGAAAGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
* *
107486336 AATATATATGTATGGTTTGATATAATCGAAGGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
107486370 AATATATAT
1 AATATATAT
107486379 ATATACATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (34 bp):
AATATATATGTATGGCTTGGTATAATCGAAGGTG
Found at i:107489281 original size:63 final size:63
Alignment explanation
Indices: 107489201--107489327 Score: 191
Period size: 63 Copynumber: 2.0 Consensus size: 63
107489191 TATTTATGAA
* * * *
107489201 TTGGGGTCACATAGGCTAGGGACATGAGCGTGTGTCCAAGTCGTGTAACTCATTATTTGTATT
1 TTGGGGTCACACAGGCTAGGGACATGAGCGTGTGTCCAAGCCGTGTAACTCACTATTTGGATT
* * *
107489264 TTGGGGTCACACGGGCTAGGGATATGAGCGTGTGTCCAGGCCGTGTAACTCACTATTTGGATT
1 TTGGGGTCACACAGGCTAGGGACATGAGCGTGTGTCCAAGCCGTGTAACTCACTATTTGGATT
107489327 T
1 T
107489328 AAGGTCACAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.31
Consensus pattern (63 bp):
TTGGGGTCACACAGGCTAGGGACATGAGCGTGTGTCCAAGCCGTGTAACTCACTATTTGGATT
Found at i:107491683 original size:27 final size:27
Alignment explanation
Indices: 107491630--107491683 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
107491620 TGTACAGGGC
* *
107491630 TTAGGCCCACCTGATTCTGTTAATGAG
1 TTAGGCCCAACTGATTCTGATAATGAG
*
107491657 TTAGGCCCAACTG-TTACTGATATTGAG
1 TTAGGCCCAACTGATT-CTGATAATGAG
107491684 AATGGGCTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (27 bp):
TTAGGCCCAACTGATTCTGATAATGAG
Found at i:107493764 original size:22 final size:22
Alignment explanation
Indices: 107493723--107493764 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
107493713 TCAAGAACAT
* *
107493723 GAAATTAAAAGCATTCAACAAA
1 GAAATTAAAAGCAATAAACAAA
*
107493745 GAAATTTAAAGCAATAAACA
1 GAAATTAAAAGCAATAAACA
107493765 TAAAAGAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.19
Consensus pattern (22 bp):
GAAATTAAAAGCAATAAACAAA
Found at i:107493839 original size:32 final size:32
Alignment explanation
Indices: 107493803--107493866 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
107493793 AGTCGAAGAA
* *
107493803 ATTGAAATACATTAAATTAAAACTAAAATGTC
1 ATTGAAATAAATTAAACTAAAACTAAAATGTC
107493835 ATTGAAATAAATTAAACTAAAACTAAAATGTC
1 ATTGAAATAAATTAAACTAAAACTAAAATGTC
107493867 TTTCAACCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (32 bp):
ATTGAAATAAATTAAACTAAAACTAAAATGTC
Found at i:107494050 original size:29 final size:29
Alignment explanation
Indices: 107494018--107494075 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
107494008 TGAAAACCCT
107494018 AGAAAAAATACAGAAAAAAAAAACTAAAA
1 AGAAAAAATACAGAAAAAAAAAACTAAAA
** **
107494047 AGAAAACCTACAGAAAACTAAAACTAAAA
1 AGAAAAAATACAGAAAAAAAAAACTAAAA
107494076 TTAAGCTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.72, C:0.12, G:0.07, T:0.09
Consensus pattern (29 bp):
AGAAAAAATACAGAAAAAAAAAACTAAAA
Found at i:107495241 original size:21 final size:20
Alignment explanation
Indices: 107495215--107495253 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
107495205 GATTATTTTG
107495215 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
107495236 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
107495254 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:107495992 original size:101 final size:102
Alignment explanation
Indices: 107495814--107496012 Score: 310
Period size: 101 Copynumber: 2.0 Consensus size: 102
107495804 AGGTGAATTG
*
107495814 AACGTAAGACCATGGTTGAACCATGGAAGTATTTATATGTAAGACCATAGCTGGGCTATGGCATT
1 AACGTAAGACCATGGTTGAACCATGGAAGTATTTATATGTAAGACCATAGCTGAGCTATGGCATT
*
107495879 TTAATGAAAAGACCATAACTAGG-TTATGGCACCTTA
66 CTAATGAAAAGACCATAACTAGGTTTATGGCACCTTA
* * **
107495915 AACGTAAGATCATGGTTGGACCATGGCGGTATTTATATGTAAGACCATAGCTGAGCTATGGCATT
1 AACGTAAGACCATGGTTGAACCATGGAAGTATTTATATGTAAGACCATAGCTGAGCTATGGCATT
* * *
107495980 CTGATGATAAGACCATAACTGGGTTTATGGCAC
66 CTAATGAAAAGACCATAACTAGGTTTATGGCAC
107496013 TATGAATGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
101 79 0.90
102 9 0.10
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (102 bp):
AACGTAAGACCATGGTTGAACCATGGAAGTATTTATATGTAAGACCATAGCTGAGCTATGGCATT
CTAATGAAAAGACCATAACTAGGTTTATGGCACCTTA
Found at i:107496025 original size:34 final size:32
Alignment explanation
Indices: 107495951--107496025 Score: 78
Period size: 34 Copynumber: 2.2 Consensus size: 32
107495941 CGGTATTTAT
* * *
107495951 ATGTAAGACCATAGCTGAGCTATGGCATTCTG
1 ATGTAAGACCATAACTGAGCTATGGCACTATG
* *
107495983 ATGATAAGACCATAACTGGGTTTATGGCACTATG
1 ATG-TAAGACCATAACTGAG-CTATGGCACTATG
107496017 AATGTAAGA
1 -ATGTAAGA
107496026 ACATGGCAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 3 0.09
33 14 0.40
34 15 0.43
35 3 0.09
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (32 bp):
ATGTAAGACCATAACTGAGCTATGGCACTATG
Found at i:107496828 original size:2 final size:2
Alignment explanation
Indices: 107496821--107496864 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
107496811 ATTAGAGAAG
107496821 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107496863 AT
1 AT
107496865 GTAAATTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107498846 original size:17 final size:17
Alignment explanation
Indices: 107498824--107498856 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
107498814 TCAAAAAAAT
107498824 ATATTTTGTTAT-TTAAA
1 ATATTTT-TTATGTTAAA
107498841 ATATTTTTTATGTTAA
1 ATATTTTTTATGTTAA
107498857 TATCGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (17 bp):
ATATTTTTTATGTTAAA
Found at i:107499316 original size:11 final size:12
Alignment explanation
Indices: 107499285--107499317 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
107499275 CCATTGATTC
107499285 ATTTAAATCAAAT
1 ATTTAAAT-AAAT
107499298 ATTTAAATAAAT
1 ATTTAAATAAAT
107499310 A-TTAAATA
1 ATTTAAATA
107499318 TAGCGAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.35
12 5 0.25
13 8 0.40
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
ATTTAAATAAAT
Found at i:107503587 original size:20 final size:20
Alignment explanation
Indices: 107503564--107503601 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
107503554 TAATATTAAT
107503564 TTTTTAAAAAGATAAAATAA
1 TTTTTAAAAAGATAAAATAA
107503584 TTTTTAAAAAGATAAAAT
1 TTTTTAAAAAGATAAAAT
107503602 GAATGATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TTTTTAAAAAGATAAAATAA
Found at i:107503613 original size:21 final size:20
Alignment explanation
Indices: 107503569--107503613 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
107503559 TTAATTTTTT
** *
107503569 AAAAAGATAAAATAATTTTT
1 AAAAAGATAAAATAATGATC
107503589 AAAAAGATAAAATGAATGATC
1 AAAAAGATAAAAT-AATGATC
107503610 AAAA
1 AAAA
107503614 TAAAAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.24
Consensus pattern (20 bp):
AAAAAGATAAAATAATGATC
Found at i:107505408 original size:3 final size:3
Alignment explanation
Indices: 107505400--107505448 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
107505390 CGATCCAAAG
107505400 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
107505448 T
1 T
107505449 AGTAATAAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:107517663 original size:51 final size:51
Alignment explanation
Indices: 107517608--107517705 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
107517598 ACCTTATAAC
* * *
107517608 ATGTAACACATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGTTAT
1 ATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCTCGGATGTTAT
**** *
107517659 ATGTATTGTATCCATGATAAACTCGGACCACTCAACGAGCTCGGATG
1 ATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCTCGGATG
107517706 CTACATATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (51 bp):
ATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCTCGGATGTTAT
Found at i:107517790 original size:43 final size:42
Alignment explanation
Indices: 107517677--107517790 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
107517667 TATCCATGAT
*
107517677 AAACTCGGACCACTCAACGAGCTCGGATGCTACATATATAAC
1 AAACTCGGACCACTCAACGAGCTCGGATTCTACATATATAAC
* * * * *
107517719 GAACTTGGACCACTCAACAAGTTCGGATTCTCACATATATCAC
1 AAACTCGGACCACTCAACGAGCTCGGATTCT-ACATATATAAC
* *
107517762 AAACTCAGACCACTCAACGAGCTAGGATT
1 AAACTCGGACCACTCAACGAGCTCGGATT
107517791 TTTTAATTCC
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (42 bp):
AAACTCGGACCACTCAACGAGCTCGGATTCTACATATATAAC
Found at i:107525428 original size:35 final size:35
Alignment explanation
Indices: 107525389--107525460 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
107525379 TTTTTTCCTT
107525389 TGTTGGTATGTCATTTCTCAATGAATTATTCCACA
1 TGTTGGTATGTCATTTCTCAATGAATTATTCCACA
107525424 TGTTGGTATGTCATTTCTCAATGAATTATTCCACA
1 TGTTGGTATGTCATTTCTCAATGAATTATTCCACA
107525459 TG
1 TG
107525461 CAAGATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (35 bp):
TGTTGGTATGTCATTTCTCAATGAATTATTCCACA
Found at i:107530069 original size:21 final size:20
Alignment explanation
Indices: 107530032--107530072 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
107530022 TGAAATAGAT
107530032 TTTAGCAAAATTAAACATAA
1 TTTAGCAAAATTAAACATAA
107530052 TTTA-CAACAATTATAACATAA
1 TTTAGCAA-AATTA-AACATAA
107530073 ATAAACTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 9 0.47
21 7 0.37
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (20 bp):
TTTAGCAAAATTAAACATAA
Found at i:107532723 original size:11 final size:11
Alignment explanation
Indices: 107532707--107532731 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
107532697 GAAGTTTTCC
107532707 TTAGTAATAAT
1 TTAGTAATAAT
107532718 TTAGTAATAAT
1 TTAGTAATAAT
107532729 TTA
1 TTA
107532732 ATCATGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (11 bp):
TTAGTAATAAT
Found at i:107533682 original size:44 final size:44
Alignment explanation
Indices: 107533633--107533717 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
107533623 TACATCACAC
* ** *
107533633 CAAAGAGCACCGTAGTGTTAAACAGATAGCACAAAAGTGCTGAT
1 CAAAGAGCACCGAAGTACTAAACAGAAAGCACAAAAGTGCTGAT
* * *
107533677 CAAAGAGTACCGAAGTACTAAATAGAAAGCACAGAAGTGCT
1 CAAAGAGCACCGAAGTACTAAACAGAAAGCACAAAAGTGCT
107533718 AAACCCATAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (44 bp):
CAAAGAGCACCGAAGTACTAAACAGAAAGCACAAAAGTGCTGAT
Found at i:107539514 original size:43 final size:43
Alignment explanation
Indices: 107539453--107539543 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
107539443 GTTACATGTA
* ** *
107539453 TCACATCCATTATGAACTC-GGACCACTCAACGAGCTCGGATGC
1 TCACATCCATAACAAACTCAGG-CCACTCAACGAGCTCGAATGC
*
107539496 TCACATCCATAACAAACTCAGGCCACTCAATGAGCTCGAATGC
1 TCACATCCATAACAAACTCAGGCCACTCAACGAGCTCGAATGC
107539539 -CACAT
1 TCACAT
107539544 ATATCATGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 5 0.12
43 35 0.83
44 2 0.05
ACGTcount: A:0.32, C:0.33, G:0.15, T:0.20
Consensus pattern (43 bp):
TCACATCCATAACAAACTCAGGCCACTCAACGAGCTCGAATGC
Found at i:107542976 original size:46 final size:46
Alignment explanation
Indices: 107542909--107543124 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
107542899 GGCAACCTGA
107542909 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
107542955 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
107543001 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
107543047 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
107543093 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
107543125 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:107543104 original size:138 final size:130
Alignment explanation
Indices: 107542859--107543124 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
107542849 AGTGTGCTCT
*
107542859 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
107542924 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
107542989 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
107543054 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
107543119 ATGGCA
123 ATGGCA
107543125 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:107548269 original size:46 final size:46
Alignment explanation
Indices: 107548202--107548417 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
107548192 GGCAACCTGA
107548202 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
107548248 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
107548294 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
107548340 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
107548386 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
107548418 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:107548397 original size:138 final size:130
Alignment explanation
Indices: 107548152--107548417 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
107548142 AGTGTGCTCT
*
107548152 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
107548217 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
107548282 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
107548347 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
107548412 ATGGCA
123 ATGGCA
107548418 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:107549391 original size:23 final size:23
Alignment explanation
Indices: 107549365--107549430 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
107549355 GATAGCCATA
* **
107549365 TATCAGGAAGTTCA-AGCGAGCAC
1 TATCAGGAAGCTCACAAAGAGC-C
*
107549388 TATCGGGAAGCTCACAAAGAGCC
1 TATCAGGAAGCTCACAAAGAGCC
*
107549411 TATCAGGAAGCTCACGAAGA
1 TATCAGGAAGCTCACAAAGA
107549431 ACCATATATC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
23 31 0.86
24 5 0.14
ACGTcount: A:0.36, C:0.23, G:0.26, T:0.15
Consensus pattern (23 bp):
TATCAGGAAGCTCACAAAGAGCC
Found at i:107551467 original size:20 final size:20
Alignment explanation
Indices: 107551442--107551485 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
107551432 TAATTAATAA
*
107551442 TAAAATAAAAAATATCTCAT
1 TAAAATAAAAAATATCTAAT
* *
107551462 TAAAATAATATATATCTAAT
1 TAAAATAAAAAATATCTAAT
107551482 TAAA
1 TAAA
107551486 TAATCATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAAATAAAAAATATCTAAT
Found at i:107555684 original size:27 final size:27
Alignment explanation
Indices: 107555646--107555714 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
107555636 TGAAACCCGA
* *
107555646 GTAGGATAAAATGACCGTAATGCCCTT
1 GTAGGATAAAATGACCGTAATACCCCT
107555673 GTAGGATAAAATGACCGTAATACCCCT
1 GTAGGATAAAATGACCGTAATACCCCT
107555700 GTATGG-TAAAATGAC
1 GTA-GGATAAAATGAC
107555715 GATTATGCCC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGGATAAAATGACCGTAATACCCCT
Found at i:107556139 original size:33 final size:33
Alignment explanation
Indices: 107556089--107556189 Score: 132
Period size: 33 Copynumber: 3.1 Consensus size: 33
107556079 GGGCTTGGGC
*
107556089 CTACTCTGCTACT-TATAGGGCTAAAGCCTAGA
1 CTACTCTGTTACTGTATAGGGCTAAAGCCTAGA
* *
107556121 CTGCTCTGTTACTGTATAGGGCTAAAGCCCAGA
1 CTACTCTGTTACTGTATAGGGCTAAAGCCTAGA
* * **
107556154 CTACTCTGTTACTGAATAAGGCTACGGCCTAGA
1 CTACTCTGTTACTGTATAGGGCTAAAGCCTAGA
107556187 CTA
1 CTA
107556190 TTTTGCATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
32 11 0.19
33 48 0.81
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (33 bp):
CTACTCTGTTACTGTATAGGGCTAAAGCCTAGA
Found at i:107582485 original size:17 final size:17
Alignment explanation
Indices: 107582463--107582496 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
107582453 TAATTTATTT
*
107582463 AATAATAATAAATTATC
1 AATAATAAAAAATTATC
107582480 AATAATAAAAAATTATC
1 AATAATAAAAAATTATC
107582497 TTATATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
AATAATAAAAAATTATC
Found at i:107587411 original size:4 final size:4
Alignment explanation
Indices: 107587402--107587427 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
107587392 AAAAAAACCA
107587402 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
107587428 TAATAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:107593433 original size:3 final size:3
Alignment explanation
Indices: 107593427--107593489 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
107593417 ATAGTAGTAG
107593427 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
107593475 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
107593490 AAGGAAATCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:107595920 original size:17 final size:18
Alignment explanation
Indices: 107595889--107595924 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
107595879 GATAAAAGTA
107595889 ATTATTGATTTTTAAAAT
1 ATTATTGATTTTTAAAAT
*
107595907 ATTATTGATTTTAAAAAT
1 ATTATTGATTTTTAAAAT
107595925 TTTAATCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
ATTATTGATTTTTAAAAT
Found at i:107597830 original size:9 final size:9
Alignment explanation
Indices: 107597816--107597942 Score: 139
Period size: 9 Copynumber: 14.1 Consensus size: 9
107597806 CCTGGCATTA
107597816 GTGGGATTT
1 GTGGGATTT
*
107597825 GTGGGACTT
1 GTGGGATTT
*
107597834 GTGGGATCT
1 GTGGGATTT
*
107597843 GTGGGACTT
1 GTGGGATTT
*
107597852 GTGGGATCT
1 GTGGGATTT
*
107597861 GTGGGATTA
1 GTGGGATTT
*
107597870 GTGGAATTT
1 GTGGGATTT
107597879 GTGGGATTT
1 GTGGGATTT
*
107597888 GTGGGATCT
1 GTGGGATTT
107597897 GTGGGATTT
1 GTGGGATTT
107597906 GTGGGATTT
1 GTGGGATTT
* *
107597915 CTGGAATTCT
1 GTGGGATT-T
107597925 -TGGGATTT
1 GTGGGATTT
* *
107597933 CTGGAATTT
1 GTGGGATTT
107597942 G
1 G
107597943 AGGAAATGGT
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
8 1 0.01
9 95 0.98
10 1 0.01
ACGTcount: A:0.14, C:0.06, G:0.40, T:0.39
Consensus pattern (9 bp):
GTGGGATTT
Found at i:107599779 original size:8 final size:7
Alignment explanation
Indices: 107599755--107599883 Score: 59
Period size: 7 Copynumber: 17.4 Consensus size: 7
107599745 ATTTTTATAC
*
107599755 TAATAAT
1 TAATAAA
107599762 TAATAAA
1 TAATAAA
107599769 TAATGAAA
1 TAAT-AAA
107599777 TAATATATA
1 TAATA-A-A
107599786 TAATAAA
1 TAATAAA
**
107599793 -AGGAAGA
1 TAATAA-A
107599800 TAATATAGA
1 TAATA-A-A
*
107599809 GAAT-AA
1 TAATAAA
107599815 T-ATATAA
1 TAATA-AA
*
107599822 TAATATA
1 TAATAAA
* *
107599829 TGATAAG
1 TAATAAA
107599836 TAATAAAA
1 TAAT-AAA
107599844 TATATAAA
1 TA-ATAAA
*
107599852 TAATATA
1 TAATAAA
107599859 TAATGAAA
1 TAAT-AAA
107599867 T-ATAAA
1 TAATAAA
107599873 TAATACAA
1 TAATA-AA
107599881 TAA
1 TAA
107599884 ATATAAAAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
5 2 0.02
6 8 0.09
7 38 0.41
8 31 0.33
9 14 0.15
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:107599825 original size:10 final size:10
Alignment explanation
Indices: 107599810--107599877 Score: 70
Period size: 10 Copynumber: 6.7 Consensus size: 10
107599800 TAATATAGAG
107599810 AATAATATAT
1 AATAATATAT
107599820 AATAATATAT
1 AATAATATAT
*
107599830 GATAAGTA-AT
1 AATAA-TATAT
107599840 AA-AATATAT
1 AATAATATAT
107599849 AAATAATATAT
1 -AATAATATAT
107599860 AATGAA-ATAT
1 AAT-AATATAT
107599870 AAATAATA
1 -AATAATA
107599878 CAATAAATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
8 2 0.04
9 4 0.08
10 28 0.57
11 15 0.31
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (10 bp):
AATAATATAT
Found at i:107599869 original size:21 final size:20
Alignment explanation
Indices: 107599810--107599898 Score: 80
Period size: 20 Copynumber: 4.5 Consensus size: 20
107599800 TAATATAGAG
107599810 AATAATATATAAT-AATATA
1 AATAATATATAATAAATATA
*
107599829 TGATAAGTA-ATAA-AATATATA
1 -AATAA-TATATAATAA-ATATA
107599850 AATAATATATAATGAAATATA
1 AATAATATATAAT-AAATATA
*
107599871 AAT-A-ATACAATAAATATA
1 AATAATATATAATAAATATA
*
107599889 AAAAATATAT
1 AATAATATAT
107599899 CCATGGTATT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
18 9 0.16
19 9 0.16
20 21 0.38
21 15 0.27
22 2 0.04
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAATATATAATAAATATA
Found at i:107599872 original size:30 final size:29
Alignment explanation
Indices: 107599813--107599897 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
107599803 TATAGAGAAT
* *
107599813 AATATAT-AATAATATATGATAAGTAATAA
1 AATATATAAATAATATATAATAAAT-ATAA
107599842 AATATATAAATAATATATAATGAAATAT-A
1 AATATATAAATAATATATAAT-AAATATAA
*
107599871 AATA-ATACAATAA-ATATAAAAAATATA
1 AATATATA-AATAATATATAATAAATATA
107599898 TCCATGGTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
27 6 0.12
28 9 0.18
29 17 0.35
30 14 0.29
31 3 0.06
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.32
Consensus pattern (29 bp):
AATATATAAATAATATATAATAAATATAA
Found at i:107599877 original size:37 final size:41
Alignment explanation
Indices: 107599801--107599898 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 41
107599791 AAAGGAAGAT
*
107599801 AATATAGAGAATAATATATAATAATATATGATAAGTAATA-A
1 AATATATA-AATAATATATAATAATATATGATAAGTAATACA
107599842 AATATATAAATAATATATAATGAA-ATAT-A-AA-TAATACA
1 AATATATAAATAATATATAAT-AATATATGATAAGTAATACA
* *
107599880 ATAAATATAAAAAATATAT
1 A-ATATATAAATAATATAT
107599899 CCATGGTATT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
37 5 0.10
38 4 0.08
39 16 0.31
40 17 0.33
41 9 0.18
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (41 bp):
AATATATAAATAATATATAATAATATATGATAAGTAATACA
Found at i:107599885 original size:18 final size:19
Alignment explanation
Indices: 107599845--107599895 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
107599835 GTAATAAAAT
*
107599845 ATATAAATAATATATAATGAA
1 ATATAAAT-A-ATACAATGAA
107599866 ATATAAATAATACAAT-AA
1 ATATAAATAATACAATGAA
*
107599884 ATATAAAAAATA
1 ATATAAATAATA
107599896 TATCCATGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 13 0.46
19 6 0.21
20 1 0.04
21 8 0.29
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
ATATAAATAATACAATGAA
Found at i:107599889 original size:14 final size:13
Alignment explanation
Indices: 107599810--107599895 Score: 54
Period size: 14 Copynumber: 6.3 Consensus size: 13
107599800 TAATATAGAG
107599810 AATAATATATAAT-
1 AATAA-ATATAATA
*
107599823 AATATATGATAAGT-
1 AATAAAT-ATAA-TA
107599837 AATAAA-ATATATA
1 AATAAATATA-ATA
107599850 AATAATATATAATGA
1 AATAA-ATATAAT-A
107599865 AATATAA-ATAATA
1 AATA-AATATAATA
*
107599878 CAATAAATATAAAA
1 -AATAAATATAATA
107599892 AATA
1 AATA
107599896 TATCCATGGT
Statistics
Matches: 60, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
12 6 0.10
13 21 0.35
14 23 0.38
15 9 0.15
16 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (13 bp):
AATAAATATAATA
Found at i:107601678 original size:15 final size:16
Alignment explanation
Indices: 107601649--107601682 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
107601639 AACAGAGAAG
107601649 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
107601665 CCAA-AATAAAGAAAT
1 CCAAGAATAAAGAAAT
107601680 CCA
1 CCA
107601683 TGATACGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.62, C:0.18, G:0.09, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:107604520 original size:51 final size:50
Alignment explanation
Indices: 107604393--107604526 Score: 178
Period size: 50 Copynumber: 2.7 Consensus size: 50
107604383 AAGCTATCTA
* * *
107604393 GTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAACCATCGG
* * * * **
107604443 ATACACGTAGCAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-CCATCGG
107604494 GTACACATAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
107604527 TGCGACCTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 37 0.52
51 34 0.48
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAACCATCGG
Found at i:107607324 original size:15 final size:15
Alignment explanation
Indices: 107607301--107607339 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
107607291 AACAGAGAAG
107607301 CCAAGAATAAAGAAAT
1 CCAA-AATAAAGAAAT
107607317 CCAAAATAAAGAAAT
1 CCAAAATAAAGAAAT
*
107607332 CCATAATA
1 CCAAAATA
107607340 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.62, C:0.15, G:0.08, T:0.15
Consensus pattern (15 bp):
CCAAAATAAAGAAAT
Found at i:107609501 original size:49 final size:49
Alignment explanation
Indices: 107609445--107609640 Score: 216
Period size: 50 Copynumber: 3.9 Consensus size: 49
107609435 TAGCCAAAGC
* *
107609445 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
107609494 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGTGACC-AAT
* * * * * *
107609544 CATCTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * *
107609595 TATC-GAGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACC
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
107609641 TTACAATAGA
Statistics
Matches: 122, Mismatches: 19, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
49 41 0.34
50 46 0.38
51 35 0.29
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:107609641 original size:101 final size:99
Alignment explanation
Indices: 107609458--107609641 Score: 246
Period size: 101 Copynumber: 1.8 Consensus size: 99
107609448 CTGGTACGCA
* * *
107609458 TAGTAGCCTGCACTTAGTACTACACATGAGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGAGACCAATTATCTGGTACACATAGTAACCTGCACTTA
*
107609523 GTACTACACACTTGACCTAACCATCTGATACACG
66 GTACTACACACTCGACCTAACCATCTGATACACG
* * * *
107609557 TAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGTTATC-GAGTACGCATAGTAACCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGAGA-CCAA-TTATCTG-GTACACATAGTAACCTGCAC
107609621 TTAGTACTACACA-TGCGACCT
63 TTAGTACTACACACT-CGACCT
107609642 TACAATAGAT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
99 28 0.38
100 5 0.07
101 40 0.55
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGAGACCAATTATCTGGTACACATAGTAACCTGCACTTA
GTACTACACACTCGACCTAACCATCTGATACACG
Found at i:107617351 original size:21 final size:20
Alignment explanation
Indices: 107617310--107617348 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
107617300 TCGATTGAAC
107617310 TAATTTTTTAAATAAAATTA
1 TAATTTTTTAAATAAAATTA
**
107617330 TAATTTTTTTTATAAAATT
1 TAATTTTTTAAATAAAATT
107617349 TATTTAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATTTTTTAAATAAAATTA
Found at i:107618183 original size:31 final size:31
Alignment explanation
Indices: 107618130--107618189 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
107618120 TTGGCCACTA
*
107618130 AACTATTTGAAAATTTTCATTTAAGTCACCG
1 AACTATTTCAAAATTTTCATTTAAGTCACCG
*
107618161 AACTA-TTCAAAAGTTTTTATTTAAGTCAC
1 AACTATTTCAAAA-TTTTCATTTAAGTCAC
107618190 TAGGCTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (31 bp):
AACTATTTCAAAATTTTCATTTAAGTCACCG
Found at i:107620177 original size:19 final size:19
Alignment explanation
Indices: 107620133--107620180 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
107620123 ATGGTGTTTT
*
107620133 ATTAGTAGAACTGTGTCTG
1 ATTAGTGGAACTGTGTCTG
*
107620152 ATTAGTGGAACTGTGTGTG
1 ATTAGTGGAACTGTGTCTG
107620171 ATTAGTGGAA
1 ATTAGTGGAA
107620181 TCTTATGTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.27, C:0.06, G:0.31, T:0.35
Consensus pattern (19 bp):
ATTAGTGGAACTGTGTCTG
Found at i:107620189 original size:19 final size:19
Alignment explanation
Indices: 107620133--107620189 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
107620123 ATGGTGTTTT
* * *
107620133 ATTAGTAGAACTGTGTCTG
1 ATTAGTGGAACTGTATGTG
*
107620152 ATTAGTGGAACTGTGTGTG
1 ATTAGTGGAACTGTATGTG
107620171 ATTAGTGGAATCT-TATGTG
1 ATTAGTGGAA-CTGTATGTG
107620190 CATGAAGAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 32 0.94
20 2 0.06
ACGTcount: A:0.25, C:0.07, G:0.30, T:0.39
Consensus pattern (19 bp):
ATTAGTGGAACTGTATGTG
Found at i:107622849 original size:25 final size:25
Alignment explanation
Indices: 107622820--107622867 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
107622810 TTATAACATG
* * *
107622820 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTATTATACCCCTAGGTA
107622845 AAAATGACTATTATACCCCTAGG
1 AAAATGACTATTATACCCCTAGG
107622868 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACTATTATACCCCTAGGTA
Found at i:107622970 original size:20 final size:20
Alignment explanation
Indices: 107622913--107622970 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
107622903 AACATGGTAC
*
107622913 GTATGATATGCACATGACAT
1 GTATGATATGCACATGATAT
*
107622933 GTATGATATGCACCTGATAT
1 GTATGATATGCACATGATAT
*
107622953 GTATGATATGCACGTGAT
1 GTATGATATGCACATGAT
107622971 GTAATCATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:107623076 original size:24 final size:24
Alignment explanation
Indices: 107623020--107623124 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 24
107623010 GAGGAAGTGA
107623020 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
107623043 TAAAGGGCTTGTGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
107623067 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
107623091 AAAAGGGCTTACGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
107623115 AAAAGGGCTT
1 AAAAGGGCTT
107623125 TTTTCCAAGC
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
23 21 0.29
24 52 0.71
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:107625498 original size:28 final size:29
Alignment explanation
Indices: 107625434--107625498 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
107625424 TTTTCATTTA
* *
107625434 TTTCACAATTTAATCCCTCAATTTACACT
1 TTTCTCAATTTAATCCCTCAATTGACACT
*
107625463 TTTCTCAATTTAA--CCTCTAATTGACATT
1 TTTCTCAATTTAATCCCTC-AATTGACACT
*
107625491 TTTGTCAA
1 TTTCTCAA
107625499 AAATCACTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 4 0.13
28 15 0.48
29 12 0.39
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (29 bp):
TTTCTCAATTTAATCCCTCAATTGACACT
Found at i:107629884 original size:20 final size:21
Alignment explanation
Indices: 107629856--107629896 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
107629846 GAATATGCTG
* *
107629856 TAAATTGAAAG-TTTTTAATA
1 TAAAATGAAAGATTATTAATA
107629876 TAAAATGAAAGATTATTAATA
1 TAAAATGAAAGATTATTAATA
107629897 GATAAACCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (21 bp):
TAAAATGAAAGATTATTAATA
Found at i:107630626 original size:32 final size:33
Alignment explanation
Indices: 107630585--107630698 Score: 99
Period size: 33 Copynumber: 3.5 Consensus size: 33
107630575 TACCCAAATG
*
107630585 GTACAACTT-GAAAGGGTTATGTACACTTTGTGT
1 GTACAACTTGGAAA-GGTTAGGTACACTTTGTGT
*
107630618 GTAC-ACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACAACTTGGAAAGGTTAGGTACACTTTGTGT
* * * ** * *
107630650 ATACCA-TATGAAAAGGAAAGGTATATTTTGTGT
1 GTACAACT-TGGAAAGGTTAGGTACACTTTGTGT
*
107630683 GTACCACTTGGAAAGG
1 GTACAACTTGGAAAGG
107630699 AATGTACACC
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
32 25 0.37
33 42 0.62
34 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (33 bp):
GTACAACTTGGAAAGGTTAGGTACACTTTGTGT
Found at i:107630699 original size:33 final size:33
Alignment explanation
Indices: 107630609--107630700 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
107630599 GGTTATGTAC
**
107630609 ACTTTGTGTGTA-CACTTGGAAAGGTTAGGTAT
1 ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
* *
107630641 ACTTTGTGTATACCA-TATGAAAAGGAAAGGTAT
1 ACTTTGTGTGTACCACT-TGGAAAGGAAAGGTAT
*
107630674 ATTTTGTGTGTACCACTTGGAAAGGAA
1 ACTTTGTGTGTACCACTTGGAAAGGAA
107630701 TGTACACCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
32 12 0.24
33 37 0.74
34 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.34
Consensus pattern (33 bp):
ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
Found at i:107635672 original size:28 final size:29
Alignment explanation
Indices: 107635608--107635672 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
107635598 TTTTCATTTC
* *
107635608 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
107635637 TTTCTCAATTTAACCCCT-AATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
107635665 TTTGTCAA
1 TTTCTCAA
107635673 AAATCACTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 15 0.47
29 17 0.53
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:107636254 original size:21 final size:21
Alignment explanation
Indices: 107636193--107636247 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
107636183 TAAATAGTTG
*
107636193 TAAAGTTTCGTCAAGAAATTT
1 TAAAGTTTCGTTAAGAAATTT
107636214 TAAAGTTTCGTTAAGAAATTT
1 TAAAGTTTCGTTAAGAAATTT
107636235 TAAAGTTTCGTTA
1 TAAAGTTTCGTTA
107636248 GTTAATTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (21 bp):
TAAAGTTTCGTTAAGAAATTT
Found at i:107637828 original size:51 final size:51
Alignment explanation
Indices: 107637752--107637919 Score: 273
Period size: 51 Copynumber: 3.3 Consensus size: 51
107637742 ACTTCAGATT
107637752 AGTGACAAGTGATAAGTGGTAGCCTCAGTTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGTTACACTTATCTGATCAGTGACA
* *
107637803 AGTGATAAGTGATAAGTGGTAGCCTCAGTTACACTTATCTTATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGTTACACTTATCTGATCAGTGACA
* * * **
107637854 AGTGTCAAGTGATAAGTGGTAGCTTTAGCAACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCCTCAGTTACACTTATCTGATCAGTGACA
107637905 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
107637920 ATGTGATCCG
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 107 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCCTCAGTTACACTTATCTGATCAGTGACA
Found at i:107647031 original size:17 final size:17
Alignment explanation
Indices: 107647004--107647102 Score: 119
Period size: 17 Copynumber: 5.9 Consensus size: 17
107646994 TGACAATGTA
*
107647004 CGAGCTCTGTTTATATG
1 CGAGCTGTGTTTATATG
*
107647021 CTAGCTGTGTTTATATG
1 CGAGCTGTGTTTATATG
107647038 CGAGCTGTGTTTATATG
1 CGAGCTGTGTTTATATG
** * *
107647055 TTAGTTGCG-TTATATG
1 CGAGCTGTGTTTATATG
* *
107647071 CGAGTTGTGTTTATATA
1 CGAGCTGTGTTTATATG
107647088 CGAGCTGTGTTTATA
1 CGAGCTGTGTTTATA
107647103 AGTGAACTGT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
16 13 0.19
17 56 0.81
ACGTcount: A:0.19, C:0.11, G:0.25, T:0.44
Consensus pattern (17 bp):
CGAGCTGTGTTTATATG
Found at i:107647073 original size:33 final size:34
Alignment explanation
Indices: 107647004--107647102 Score: 119
Period size: 33 Copynumber: 2.9 Consensus size: 34
107646994 TGACAATGTA
* *
107647004 CGAGCTCTGTTTATATGCTAGCTGTGTTTATATG
1 CGAGCTGTGTTTATATGCTAGCTGCGTTTATATG
* *
107647038 CGAGCTGTGTTTATATGTTAGTTGCG-TTATATG
1 CGAGCTGTGTTTATATGCTAGCTGCGTTTATATG
* * * *
107647071 CGAGTTGTGTTTATATACGAGCTGTGTTTATA
1 CGAGCTGTGTTTATATGCTAGCTGCGTTTATA
107647103 AGTGAACTGT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
33 27 0.50
34 27 0.50
ACGTcount: A:0.19, C:0.11, G:0.25, T:0.44
Consensus pattern (34 bp):
CGAGCTGTGTTTATATGCTAGCTGCGTTTATATG
Found at i:107647322 original size:27 final size:27
Alignment explanation
Indices: 107647284--107647348 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
107647274 GTGTGGGCTC
107647284 TCTATAAAGTATCTAAGTGCGAGCTGG
1 TCTATAAAGTATCTAAGTGCGAGCTGG
* **
107647311 TCTATAAAGTATTTAAGTTTGAGCTGG
1 TCTATAAAGTATCTAAGTGCGAGCTGG
*
107647338 TCTGTAAAGTA
1 TCTATAAAGTA
107647349 ATAATATGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTATAAAGTATCTAAGTGCGAGCTGG
Found at i:107649093 original size:38 final size:38
Alignment explanation
Indices: 107649051--107649157 Score: 151
Period size: 38 Copynumber: 2.8 Consensus size: 38
107649041 TGAAATACCA
*
107649051 AATATACTGAATGTTGCTCAATCAAGTAAAATCTACTG
1 AATATACTGAATGTTGCTCAATCAAGCAAAATCTACTG
* * *
107649089 AATATACTGAACGTTTCTCAATCGAGCAAAATCTACTG
1 AATATACTGAATGTTGCTCAATCAAGCAAAATCTACTG
* * *
107649127 AATATACTAAATGTCGCTCAATCGAGCAAAA
1 AATATACTGAATGTTGCTCAATCAAGCAAAA
107649158 GAATTCACTG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (38 bp):
AATATACTGAATGTTGCTCAATCAAGCAAAATCTACTG
Found at i:107651805 original size:32 final size:33
Alignment explanation
Indices: 107651763--107651837 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 33
107651753 CTTGAATTTT
*
107651763 AAAATCTTAAAGAAACTAAATTTCTAAA-A-ATA
1 AAAATATTAAAGAAACTAAATTT-TAAATATATA
107651795 AAAATATT--A-AAACTAAATTTTAAATATATA
1 AAAATATTAAAGAAACTAAATTTTAAATATATA
*
107651825 AAAAAATATAAAG
1 AAAATAT-TAAAG
107651838 GCTCATACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
28 4 0.11
29 12 0.34
30 10 0.29
31 1 0.03
32 7 0.20
33 1 0.03
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (33 bp):
AAAATATTAAAGAAACTAAATTTTAAATATATA
Found at i:107657733 original size:20 final size:21
Alignment explanation
Indices: 107657691--107657748 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 21
107657681 ATAAAATATT
107657691 AAAAATTATAAAAA-ATCAGA
1 AAAAATTATAAAAATATCAGA
107657711 AAAACATTATAAAAATA-CA-A
1 AAAA-ATTATAAAAATATCAGA
107657731 AAATATATT-TAAAAATAT
1 AAA-A-ATTATAAAAATAT
107657749 GAAAATTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 16 0.48
21 16 0.48
22 1 0.03
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAAATTATAAAAATATCAGA
Found at i:107658808 original size:45 final size:46
Alignment explanation
Indices: 107658759--107658850 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 46
107658749 AAGAATTCTA
*
107658759 ATAATTTTTTA-ATTTTAAATA-TTTTAATTAAG-TTTTATTAATTTT
1 ATAATTTATTAGATTTT-AATACTTTTAA-TAAGTTTTTATTAATTTT
* *
107658804 ATAATTTATTAGATTTTTATACTTTTAATAAGTTTTTGTTAATTTT
1 ATAATTTATTAGATTTTAATACTTTTAATAAGTTTTTATTAATTTT
107658850 A
1 A
107658851 ATATTTTACT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
45 17 0.41
46 24 0.59
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (46 bp):
ATAATTTATTAGATTTTAATACTTTTAATAAGTTTTTATTAATTTT
Found at i:107661886 original size:3 final size:3
Alignment explanation
Indices: 107661878--107661948 Score: 74
Period size: 3 Copynumber: 24.0 Consensus size: 3
107661868 ACAATAGAAA
* * * *
107661878 AAT AAT AAT GAT GAT AAT AAT ACT -AT AAC AGA- AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
*
107661922 AAT AAC AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
107661949 TTTAAAAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.03
3 55 0.95
4 1 0.02
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:107663673 original size:45 final size:45
Alignment explanation
Indices: 107663542--107663674 Score: 178
Period size: 45 Copynumber: 3.0 Consensus size: 45
107663532 GGTGGCTAAA
* * * *
107663542 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCACCATCTTTG
1 ATCTGCTCCATAACCGATACATGGAGATAAGATCTGA-AATTTTTG
* *
107663587 ATCTGCTCTATAACCGATACATGGAGATAAGATCTGTAATTTTTG
1 ATCTGCTCCATAACCGATACATGGAGATAAGATCTGAAATTTTTG
* *
107663632 ATCTACTCCATAACCGATATATGGAGATAAGATCTGAAATTTT
1 ATCTGCTCCATAACCGATACATGGAGATAAGATCTGAAATTTT
107663675 CCAGCTTGTT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 75 0.97
46 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (45 bp):
ATCTGCTCCATAACCGATACATGGAGATAAGATCTGAAATTTTTG
Found at i:107663929 original size:177 final size:177
Alignment explanation
Indices: 107663587--107664150 Score: 740
Period size: 177 Copynumber: 3.2 Consensus size: 177
107663577 ACCATCTTTG
* * * ** * * *
107663587 ATCTGCTCTATAACCGATACATGGAGATAAGA-TCTGTAATTTTTGATCTACTCCATAACCGATA
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACT-TGCCATCTTTGATCTGCTCCATAGCCGATA
* * * * *
107663651 TATGGAGATAAGATCTGAAATTTTCCAGCTTGTTACCCTACTGCTTAGGGGGTTAAGACTCGTAT
65 CATGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCTTACTACTTAGGGGGTTAAGACTCGTAT
*
107663716 CTTTAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAA
129 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAA
107663765 ATCTGCTCCATAGCCGATACATAGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGATAC
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGATAC
107663830 ATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCTTACTACTTAGGGGGTTAAGACTCGTATCT
66 ATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCTTACTACTTAGGGGGTTAAGACTCGTATCT
* *
107663895 TCAACCTGCTCTATTGCTACCTCAGAGAGATAAGGTCGTTGGCTAAA
131 TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAA
*
107663942 ATCTGCTCCATAGCCGATACATAGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCTGATAC
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGATAC
* * * * * ** * ** * *
107664007 ATGGAGATAAGATCTATAATTTCCAGTCTACTT-TCTTGTTAGCTCAGGAAGATAAGACTTGTAT
66 ATGGAGATAAGATCTGTAATTTTCAGCCT-GTTACCTTACTA-CTTAGGGGGTTAAGACTCGTAT
* * *
107664071 CTTCAACCTGCTATCTTGCTACCTTAGAGAGATAA-GACTGGTGGCTAAA
129 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTC-GGTGGCTAAA
* *
107664120 ATCTGCTCTATAGGCGATACAT-GAAGATAAG
1 ATCTGCTCCATAGCCGATACATAG-AGATAAG
107664151 TTCTGTAATT
Statistics
Matches: 345, Mismatches: 36, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
177 181 0.52
178 163 0.47
179 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (177 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGACTTGCCATCTTTGATCTGCTCCATAGCCGATAC
ATGGAGATAAGATCTGTAATTTTCAGCCTGTTACCTTACTACTTAGGGGGTTAAGACTCGTATCT
TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCGGTGGCTAAA
Found at i:107670256 original size:25 final size:25
Alignment explanation
Indices: 107670215--107670400 Score: 135
Period size: 25 Copynumber: 7.0 Consensus size: 25
107670205 ACATGATATT
107670215 CTTATCATGAAACATTTACCTAACC
1 CTTATCATGAAACATTTACCTAACC
* *
107670240 CTTATCATGGAATATTTACCTAATCC
1 CTTATCATGAAACATTTACCTAA-CC
* *
107670266 ATTATAATGTTTATCATGGAACATTTACCTAACTC
1 CTTATCATG------A---AACATTTACCTAAC-C
* *
107670301 ATTATCATG-AATA-TTACCTAATCC
1 CTTATCATGAAACATTTACCTAA-CC
* *
107670325 ATTATCATGGAACATTTACCTAACC
1 CTTATCATGAAACATTTACCTAACC
*
107670350 TATTATCATG-AACATTTACCTAACC
1 -CTTATCATGAAACATTTACCTAACC
*
107670375 CATTATCATGGAACATTTACCTAACC
1 C-TTATCATGAAACATTTACCTAACC
107670401 TATTATCAAT
Statistics
Matches: 134, Mismatches: 10, Indels: 33
0.76 0.06 0.19
Matches are distributed among these distances:
24 18 0.13
25 53 0.40
26 41 0.31
34 1 0.01
35 21 0.16
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (25 bp):
CTTATCATGAAACATTTACCTAACC
Done.