Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 350 of 410
Found at i:108059501 original size:38 final size:40
Alignment explanation
Indices: 108059345--108059510 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 40
108059335 CGGGATTTAA
* * * * *
108059345 CCGGATACAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *** * * *
108059385 CCGGATTTGGTAACTTGCACCATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
108059425 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
108059465 CCGGATA-ATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
108059503 CCGGATAT
1 CCGGATAT
108059511 CATTCAAATG
Statistics
Matches: 103, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
38 31 0.30
39 2 0.02
40 70 0.68
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:108067396 original size:40 final size:40
Alignment explanation
Indices: 108067347--108067498 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
108067337 ACAACCACAA
* * *** *
108067347 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
108067387 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
108067427 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
108067467 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
108067499 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:108069798 original size:58 final size:54
Alignment explanation
Indices: 108069710--108069824 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 54
108069700 TTAATCTGAT
* * ** * * *
108069710 AAAGTTGGTGCCAGCCATCGGTGTCTCAAAACCAAAAAAAAGAATTTTGGGACTCGAA
1 AAAGGTGGTGCCAGCCACCAATGTCCCAAAA--AAAAAAAAG--TCTTGGAACTCGAA
108069768 AAAGGTGGTGCCAGCCACCAATGTCCCAAAAAAAAAAAAGTCTTGGAACTCGAA
1 AAAGGTGGTGCCAGCCACCAATGTCCCAAAAAAAAAAAAGTCTTGGAACTCGAA
108069822 AAA
1 AAA
108069825 TGTACTTGGT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 15 0.30
56 9 0.18
58 26 0.52
ACGTcount: A:0.42, C:0.20, G:0.21, T:0.17
Consensus pattern (54 bp):
AAAGGTGGTGCCAGCCACCAATGTCCCAAAAAAAAAAAAGTCTTGGAACTCGAA
Found at i:108073106 original size:23 final size:23
Alignment explanation
Indices: 108073080--108073143 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
108073070 TAAGTGCGCA
*
108073080 AGTGATAGTGGCACTACAATACT
1 AGTGAAAGTGGCACTACAATACT
** *
108073103 AGTGAAAGCAGCACTACGATACT
1 AGTGAAAGTGGCACTACAATACT
108073126 AGTGAAAGTGGCACTACA
1 AGTGAAAGTGGCACTACA
108073144 TTGCAAGTGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (23 bp):
AGTGAAAGTGGCACTACAATACT
Found at i:108075433 original size:105 final size:105
Alignment explanation
Indices: 108075251--108075442 Score: 357
Period size: 105 Copynumber: 1.8 Consensus size: 105
108075241 TACAATAAAA
* *
108075251 TTTTGTTTAAGAGGATTATTAAACCCTCTATCATTCCAAAAAACAAGAATCATGTAGGAATGGAT
1 TTTTGTTTAAGAGGATTATTAAACCCTCTAACATTCCAAAAAACAAGAATAATGTAGGAATGGAT
108075316 GAAAAAGTACCTCCATTGGCAGTCGACCCTGCCAGATTCC
66 GAAAAAGTACCTCCATTGGCAGTCGACCCTGCCAGATTCC
*
108075356 TTTTGTTTAATAGGATTATTAAACCCTCTAACATTCCAAAAAACAAGAATAATGTAGGAATGGAT
1 TTTTGTTTAAGAGGATTATTAAACCCTCTAACATTCCAAAAAACAAGAATAATGTAGGAATGGAT
108075421 GAAAAAGTACCTCCATTGGCAG
66 GAAAAAGTACCTCCATTGGCAG
108075443 GTAACCCTAC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 84 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (105 bp):
TTTTGTTTAAGAGGATTATTAAACCCTCTAACATTCCAAAAAACAAGAATAATGTAGGAATGGAT
GAAAAAGTACCTCCATTGGCAGTCGACCCTGCCAGATTCC
Found at i:108090319 original size:21 final size:21
Alignment explanation
Indices: 108090285--108090402 Score: 103
Period size: 21 Copynumber: 5.7 Consensus size: 21
108090275 ATAAGTGCTA
* *
108090285 AACAGAAACCCATAAGGGTTG
1 AACAAAAACTCATAAGGGTTG
* * *
108090306 ATCAAAAGCTCATAAGAGTTG
1 AACAAAAACTCATAAGGGTTG
*
108090327 AACAAAAACTCATAAGGG-TA
1 AACAAAAACTCATAAGGGTTG
* * * *
108090347 AACAGAAGCTCAAAAGAGTTG
1 AACAAAAACTCATAAGGGTTG
* *
108090368 AACAAAAACCCATTAGGGTTG
1 AACAAAAACTCATAAGGGTTG
**
108090389 AACGGAAACTCATA
1 AACAAAAACTCATA
108090403 TGAGTTAGCA
Statistics
Matches: 72, Mismatches: 24, Indels: 2
0.73 0.24 0.02
Matches are distributed among these distances:
20 15 0.21
21 57 0.79
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (21 bp):
AACAAAAACTCATAAGGGTTG
Found at i:108090341 original size:42 final size:42
Alignment explanation
Indices: 108090264--108090408 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 42
108090254 CCGAAGGCTA
* * * * *
108090264 AACAAAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTG
1 AACAAAAGCTCATAAGAGTTGAACAAAAACCCATAAGGGTTG
* * *
108090306 ATCAAAAGCTCATAAGAGTTGAACAAAAACTCATAAGGG-TA
1 AACAAAAGCTCATAAGAGTTGAACAAAAACCCATAAGGGTTG
* * *
108090347 AACAGAAGCTCAAAAGAGTTGAACAAAAACCCATTAGGGTTG
1 AACAAAAGCTCATAAGAGTTGAACAAAAACCCATAAGGGTTG
* *
108090389 AACGGAAA-CTCATATGAGTT
1 AAC-AAAAGCTCATAAGAGTT
108090409 AGCAAAAGCT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 35 0.42
42 46 0.55
43 2 0.02
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.18
Consensus pattern (42 bp):
AACAAAAGCTCATAAGAGTTGAACAAAAACCCATAAGGGTTG
Found at i:108090368 original size:62 final size:63
Alignment explanation
Indices: 108090264--108090402 Score: 145
Period size: 62 Copynumber: 2.2 Consensus size: 63
108090254 CCGAAGGCTA
* * * * * * *
108090264 AACAAAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGATCAAAAGCTCATAAGAGTTG
1 AACAAAAACTCATAAGTGCTAAACAGAAACCCAAAAGAGTTGAACAAAAACCCATAAGAGTTG
* * * * *
108090327 AACAAAAACTCATAAG-GGTAAACAGAAGCTCAAAAGAGTTGAACAAAAACCCATTAGGGTTG
1 AACAAAAACTCATAAGTGCTAAACAGAAACCCAAAAGAGTTGAACAAAAACCCATAAGAGTTG
**
108090389 AACGGAAACTCATA
1 AACAAAAACTCATA
108090403 TGAGTTAGCA
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
62 48 0.77
63 14 0.23
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (63 bp):
AACAAAAACTCATAAGTGCTAAACAGAAACCCAAAAGAGTTGAACAAAAACCCATAAGAGTTG
Found at i:108091847 original size:46 final size:46
Alignment explanation
Indices: 108091780--108091957 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
108091770 TGTAACCCAC
* * *
108091780 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* * * *
108091826 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * ** *
108091872 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
*
108091919 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
108091958 CCCAAACATC
Statistics
Matches: 104, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
46 71 0.68
47 33 0.32
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:108091901 original size:93 final size:93
Alignment explanation
Indices: 108091788--108091959 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
108091778 ACCCATAAGT
* ***
108091788 GAACTTGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
108091853 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * *
108091881 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
* *
108091946 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
108091960 CAAACATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:108094378 original size:15 final size:15
Alignment explanation
Indices: 108094358--108094398 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
108094348 CAAGAATATC
108094358 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
108094373 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
108094388 GGATAAAGAAA
1 GAATAAAGAAA
108094399 CCCAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:108094407 original size:15 final size:15
Alignment explanation
Indices: 108094360--108094407 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
108094350 AGAATATCGA
108094360 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
108094374 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
108094390 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
108094405 ATA
1 ATA
108094408 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:108097481 original size:93 final size:93
Alignment explanation
Indices: 108097369--108097540 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
108097359 GCCCATAAGT
* *
108097369 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
108097434 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
108097462 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
108097527 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
108097541 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:108097536 original size:46 final size:46
Alignment explanation
Indices: 108097361--108097536 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
108097351 TGTAACCCGC
* * *
108097361 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
108097407 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
108097457 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
108097500 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
108097537 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:108101697 original size:48 final size:49
Alignment explanation
Indices: 108101523--108101703 Score: 174
Period size: 48 Copynumber: 3.7 Consensus size: 49
108101513 GTATGATGCT
** * *
108101523 GATACCATGTCCCAGACATGGTCTTACACTGGCTA--TCGAAATCGATGCC
1 GATACCATGTCCCAGACATGGTCTTACACTAAC-ACCTCCATATCG-TGCC
* * * **
108101572 GACACCATGT-CCAGACATGGTCTTACACTAGC-TCTCACATATTCGTGTA
1 GATACCATGTCCCAGACATGGTCTTACACTAACACCTC-CATA-TCGTGCC
* *
108101621 GATACCATATCCCAGACATGGTCTTACACTAACACCTCTATAT-GTGCC
1 GATACCATGTCCCAGACATGGTCTTACACTAACACCTCCATATCGTGCC
* *
108101669 GATGCCATGTCCCAGACATGGTCTTACACTGACAC
1 GATACCATGTCCCAGACATGGTCTTACACTAACAC
108101704 ATCTCGTAGC
Statistics
Matches: 110, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
48 58 0.53
49 22 0.20
50 27 0.25
51 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (49 bp):
GATACCATGTCCCAGACATGGTCTTACACTAACACCTCCATATCGTGCC
Found at i:108101752 original size:46 final size:44
Alignment explanation
Indices: 108101630--108101788 Score: 160
Period size: 46 Copynumber: 3.5 Consensus size: 44
108101620 AGATACCATA
* *
108101630 TCCCAGACATGGTCTTACACTAACACCTCT-ATATGTGCCGATGCCATG
1 TCCCAGACAT-GTCTTACACTGACACATCTCA-A-G-GCCGATG-CATG
*
108101678 TCCCAGACATGGTCTTACACTGACACATCTCGTA-GCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGACACATCTC-AAGGCCGATGCATG
* * * *
108101723 TCTCAGACATGCCTTACACTGGCTTACATCTCAAGGCCAATGCATG
1 TCCCAGACATGTCTTACACTGAC--ACATCTCAAGGCCGATGCATG
108101769 TCCCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
108101789 AGCTCTCGTC
Statistics
Matches: 96, Mismatches: 10, Indels: 12
0.81 0.08 0.10
Matches are distributed among these distances:
44 11 0.11
45 14 0.15
46 42 0.44
48 28 0.29
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTGACACATCTCAAGGCCGATGCATG
Found at i:108101801 original size:46 final size:46
Alignment explanation
Indices: 108101674--108101885 Score: 164
Period size: 46 Copynumber: 4.6 Consensus size: 46
108101664 GTGCCGATGC
* * * *
108101674 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTC-AAGGCCAATG
* * *
108101719 CATGTCTCAGACATGCCTTACACTGGCT-TACATCTCAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCCAATG
* ***
108101765 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCATTACCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCAATG
* * * * ** **
108101811 TCATGTCCTAGACATGGTCTTACATTGGCTCTCATAAT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAAGGCCAATG
108101859 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
108101886 ACACGAATAA
Statistics
Matches: 133, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 60 0.45
47 27 0.20
48 21 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCAATG
Found at i:108109246 original size:26 final size:26
Alignment explanation
Indices: 108109210--108109319 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
108109200 TGATACAAAT
*
108109210 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
108109236 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
108109262 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
108109288 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
108109314 TGATAA
1 TGATAA
108109320 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:108124804 original size:102 final size:102
Alignment explanation
Indices: 108124628--108124831 Score: 354
Period size: 102 Copynumber: 2.0 Consensus size: 102
108124618 TTTCGCTCGG
*
108124628 AGTACGTTTTCTAGATTCAGTCACTGCAGTAGGTGGAGGTGCAATCGACGGCTCTATAGGTGGTA
1 AGTACGTTTTCTAGATTCAGTCACTACAGTAGGTGGAGGTGCAATCGACGGCTCTATAGGTGGTA
*
108124693 TAATAGGAGGAAGAGGTTGTTGAGCCATATTTCTCTC
66 TAATAGGAGGAAGAGATTGTTGAGCCATATTTCTCTC
* *
108124730 AGTACGTTTTCTAGATTTAGTCACTACAGTAGGTGGAGGTGCAATCGGCGGCTCTATAGGTGGTA
1 AGTACGTTTTCTAGATTCAGTCACTACAGTAGGTGGAGGTGCAATCGACGGCTCTATAGGTGGTA
* *
108124795 TAATAGGAGGATGAGATTGTTGAGCCATATTTTTCTC
66 TAATAGGAGGAAGAGATTGTTGAGCCATATTTCTCTC
108124832 TTACATGAAT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 96 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (102 bp):
AGTACGTTTTCTAGATTCAGTCACTACAGTAGGTGGAGGTGCAATCGACGGCTCTATAGGTGGTA
TAATAGGAGGAAGAGATTGTTGAGCCATATTTCTCTC
Found at i:108127872 original size:25 final size:25
Alignment explanation
Indices: 108127838--108127918 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
108127828 CATACGAGCG
108127838 ATAATCGGTAAGCTTCTTCGAGCTGA
1 ATAA-CGGTAAGCTTCTTCGAGCTGA
* *
108127864 ATAACGGTAAGCTTATGT-GAGCTAA
1 ATAACGGTAAGCTTCT-TCGAGCTGA
* * * *
108127889 ATATCGGTAAGCTTCTCCGAGTTGG
1 ATAACGGTAAGCTTCTTCGAGCTGA
108127914 ATAAC
1 ATAAC
108127919 AATAAGCTCA
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
25 39 0.89
26 5 0.11
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (25 bp):
ATAACGGTAAGCTTCTTCGAGCTGA
Found at i:108127918 original size:50 final size:50
Alignment explanation
Indices: 108127841--108127936 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
108127831 ACGAGCGATA
* ** * *
108127841 ATCGGTAAGCTTCTTCGAGCTGAATAACGGTAAGCTTATGTGAGCTAAAT
1 ATCGGTAAGCTTCTCCGAGCTGAATAACAATAAGCTCATGCGAGCTAAAT
* *
108127891 ATCGGTAAGCTTCTCCGAGTTGGATAACAATAAGCTCATGCGAGCT
1 ATCGGTAAGCTTCTCCGAGCTGAATAACAATAAGCTCATGCGAGCT
108127937 GTGGTGAGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (50 bp):
ATCGGTAAGCTTCTCCGAGCTGAATAACAATAAGCTCATGCGAGCTAAAT
Found at i:108129939 original size:42 final size:42
Alignment explanation
Indices: 108129846--108129970 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 42
108129836 TCCGAAGGCT
* * * *
108129846 AAACAAAAGCACATAAGTGCTAAACAGAAACCC-TAAAGGGTT
1 AAACAGAAGCTCATAAGAGCTAAACAGAAACCCAT-AAGGGTC
* * * *
108129888 GATCGGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGTC
1 AAACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTC
* * * *
108129930 AAACAGAAGCTCAAAAGAGCTGAATAGAAACCCATTAGGGT
1 AAACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGT
108129971 TGAACGAAAA
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 65 0.98
43 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.14
Consensus pattern (42 bp):
AAACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTC
Found at i:108139030 original size:30 final size:30
Alignment explanation
Indices: 108138990--108139049 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
108138980 GTAACAAATC
108138990 GATAACATTAATTACCATATCATAACTTTT
1 GATAACATTAATTACCATATCATAACTTTT
* * *
108139020 GATAATATTAATTATCATATCATAATTTTT
1 GATAACATTAATTACCATATCATAACTTTT
108139050 TAAAATTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (30 bp):
GATAACATTAATTACCATATCATAACTTTT
Found at i:108139088 original size:17 final size:18
Alignment explanation
Indices: 108139066--108139102 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
108139056 TTAGTGATCG
*
108139066 AAATATAATTTAAA-CTA
1 AAATATAACTTAAACCTA
108139083 AAATATAACTTAAACCTA
1 AAATATAACTTAAACCTA
108139101 AA
1 AA
108139103 TGTAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATATAACTTAAACCTA
Found at i:108139103 original size:17 final size:17
Alignment explanation
Indices: 108139066--108139113 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
108139056 TTAGTGATCG
*
108139066 AAATATAATTTAAACTA
1 AAATATAAATTAAACTA
*
108139083 AAATATAACTTAAACCT-
1 AAATATAAATTAAA-CTA
*
108139100 AAATGTAAATTAAA
1 AAATATAAATTAAA
108139114 AAGTGAGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.31
Consensus pattern (17 bp):
AAATATAAATTAAACTA
Found at i:108142610 original size:2 final size:2
Alignment explanation
Indices: 108142603--108142627 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
108142593 TAGTTCAACT
108142603 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
108142628 TGGAATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:108145649 original size:14 final size:14
Alignment explanation
Indices: 108145622--108145660 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
108145612 AATTTAACTC
108145622 AATTT-TTAAAAAT
1 AATTTATTAAAAAT
*
108145635 AATTTATTAATAAT
1 AATTTATTAAAAAT
108145649 AATTTATTAAAA
1 AATTTATTAAAA
108145661 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AATTTATTAAAAAT
Found at i:108147687 original size:2 final size:2
Alignment explanation
Indices: 108147680--108147706 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
108147670 ATTGGATTGT
108147680 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
108147707 TAAAGTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108149634 original size:2 final size:2
Alignment explanation
Indices: 108149627--108149658 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
108149617 TCTTAAACTC
108149627 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108149659 TTCAGTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108155202 original size:13 final size:14
Alignment explanation
Indices: 108155184--108155212 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
108155174 ATTGTAAAAT
108155184 ATTTATA-ATTTTA
1 ATTTATATATTTTA
108155197 ATTTATATATTTTA
1 ATTTATATATTTTA
108155211 AT
1 AT
108155213 AGATTCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTATATATTTTA
Found at i:108162838 original size:30 final size:30
Alignment explanation
Indices: 108162733--108162828 Score: 138
Period size: 30 Copynumber: 3.2 Consensus size: 30
108162723 CTAGGACCAC
*
108162733 CACCAGCTTTTGGAGGAGGTGGTGGAGGAG
1 CACCAGCTTTAGGAGGAGGTGGTGGAGGAG
* * * *
108162763 CGCCAGCTTTAGAAGGAGGTGGCGGAGGGG
1 CACCAGCTTTAGGAGGAGGTGGTGGAGGAG
*
108162793 CACCAGCTTTCGGAGGAGGTGGTGGAGGAG
1 CACCAGCTTTAGGAGGAGGTGGTGGAGGAG
108162823 CACCAG
1 CACCAG
108162829 GAGGTGGAGG
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.21, C:0.18, G:0.46, T:0.16
Consensus pattern (30 bp):
CACCAGCTTTAGGAGGAGGTGGTGGAGGAG
Found at i:108166323 original size:1 final size:1
Alignment explanation
Indices: 108166319--108166348 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
108166309 TATGGGCCCT
*
108166319 GGGGGGGGGGGGGGGGGGGGGGGAGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
108166349 CGGTTCACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.97, T:0.00
Consensus pattern (1 bp):
G
Found at i:108167885 original size:12 final size:11
Alignment explanation
Indices: 108167863--108167890 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
108167853 AAACAACTTT
108167863 AAAAAATAAAA
1 AAAAAATAAAA
108167874 AAAAAATAAAA
1 AAAAAATAAAA
108167885 AAAAAA
1 AAAAAA
108167891 CTTATCGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAATAAAA
Found at i:108180877 original size:26 final size:26
Alignment explanation
Indices: 108180844--108180979 Score: 220
Period size: 26 Copynumber: 5.2 Consensus size: 26
108180834 TGATACAAAT
108180844 TGATAATGGGTTAGGTAAAT-TTTCCA
1 TGATAATGGGTTAGGTAAATGTTT-CA
* * * *
108180870 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
108180896 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
108180922 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
108180948 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
108180974 TGATAA
1 TGATAA
108180980 GAATTACATG
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 100 0.98
27 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:108187901 original size:16 final size:16
Alignment explanation
Indices: 108187880--108187939 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
108187870 TTATAAATGT
108187880 TTATTCCATTCCTACC
1 TTATTCCATTCCTACC
* * **
108187896 TTATTCCAATCAATAAT
1 TTATTCCATTC-CTACC
*
108187913 TTGTTCCATTCCTACC
1 TTATTCCATTCCTACC
*
108187929 CTATTCCATTC
1 TTATTCCATTC
108187940 AATGAACCAA
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
16 21 0.66
17 11 0.34
ACGTcount: A:0.23, C:0.32, G:0.02, T:0.43
Consensus pattern (16 bp):
TTATTCCATTCCTACC
Found at i:108188298 original size:201 final size:201
Alignment explanation
Indices: 108187953--108188356 Score: 808
Period size: 201 Copynumber: 2.0 Consensus size: 201
108187943 GAACCAAAAG
108187953 TTCAAATATTCAACACAATGTCTCGAGACGTGGTTTATTTCCTCAAGACATAGGTACTAAGGTCT
1 TTCAAATATTCAACACAATGTCTCGAGACGTGGTTTATTTCCTCAAGACATAGGTACTAAGGTCT
108188018 CAAGACTTCAAACTTCGAAGTTGAAATAGCAAAAATAGGGGAAGTATGTCTTGAAAAATGGCCTT
66 CAAGACTTCAAACTTCGAAGTTGAAATAGCAAAAATAGGGGAAGTATGTCTTGAAAAATGGCCTT
108188083 ACATGTCTATTATATGTGGGCCTATTTGAGTTCATTTAACACTTGTAATGACTTTTAATTGAAAT
131 ACATGTCTATTATATGTGGGCCTATTTGAGTTCATTTAACACTTGTAATGACTTTTAATTGAAAT
108188148 ATCTCA
196 ATCTCA
108188154 TTCAAATATTCAACACAATGTCTCGAGACGTGGTTTATTTCCTCAAGACATAGGTACTAAGGTCT
1 TTCAAATATTCAACACAATGTCTCGAGACGTGGTTTATTTCCTCAAGACATAGGTACTAAGGTCT
108188219 CAAGACTTCAAACTTCGAAGTTGAAATAGCAAAAATAGGGGAAGTATGTCTTGAAAAATGGCCTT
66 CAAGACTTCAAACTTCGAAGTTGAAATAGCAAAAATAGGGGAAGTATGTCTTGAAAAATGGCCTT
108188284 ACATGTCTATTATATGTGGGCCTATTTGAGTTCATTTAACACTTGTAATGACTTTTAATTGAAAT
131 ACATGTCTATTATATGTGGGCCTATTTGAGTTCATTTAACACTTGTAATGACTTTTAATTGAAAT
108188349 ATCTCA
196 ATCTCA
108188355 TT
1 TT
108188357 TATCTCATGT
Statistics
Matches: 203, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 203 1.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (201 bp):
TTCAAATATTCAACACAATGTCTCGAGACGTGGTTTATTTCCTCAAGACATAGGTACTAAGGTCT
CAAGACTTCAAACTTCGAAGTTGAAATAGCAAAAATAGGGGAAGTATGTCTTGAAAAATGGCCTT
ACATGTCTATTATATGTGGGCCTATTTGAGTTCATTTAACACTTGTAATGACTTTTAATTGAAAT
ATCTCA
Found at i:108196973 original size:2 final size:2
Alignment explanation
Indices: 108196962--108197012 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
108196952 ACAAAGGTAA
108196962 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108197003 AT AT AT AT AT
1 AT AT AT AT AT
108197013 GAGATACCTG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:108199338 original size:41 final size:41
Alignment explanation
Indices: 108199276--108199358 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
108199266 TAATGGTGGA
*
108199276 TTGATTTAAATTTTGTTAAGTTACTTATTATTGAAATTTAT
1 TTGACTTAAATTTTGTTAAGTTACTTATTATTGAAATTTAT
108199317 TTGACTTAAATTTTGTTAAGTTACTTATTATTGAAATTTAT
1 TTGACTTAAATTTTGTTAAGTTACTTATTATTGAAATTTAT
108199358 T
1 T
108199359 GGTTCTTATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (41 bp):
TTGACTTAAATTTTGTTAAGTTACTTATTATTGAAATTTAT
Found at i:108200126 original size:6 final size:6
Alignment explanation
Indices: 108200110--108200140 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
108200100 TTAAAATCAG
108200110 ATTTATA ATTTTA ATTTTA ATTTTA ATTTTA
1 ATTT-TA ATTTTA ATTTTA ATTTTA ATTTTA
108200141 TTATGTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTTA
Found at i:108205259 original size:54 final size:56
Alignment explanation
Indices: 108205159--108205263 Score: 153
Period size: 54 Copynumber: 1.9 Consensus size: 56
108205149 TTGTGCTATT
* *
108205159 CTGGTGTGTTTTGGATGGATTATATTATTTGGTGTGTTTGGGAGGATTATATGATA
1 CTGGTGTGTTTGGGATGGATTATATTATCTGGTGTGTTTGGGAGGATTATATGATA
*
108205215 CTGGTGTGTTTGGGA-GGATTATGA-TA-CTGGTGTGTTTTGGAGGATTATA
1 CTGGTGTGTTTGGGATGGATTAT-ATTATCTGGTGTGTTTGGGAGGATTATA
108205264 CTGGTGTGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
54 21 0.47
55 9 0.20
56 15 0.33
ACGTcount: A:0.19, C:0.03, G:0.34, T:0.44
Consensus pattern (56 bp):
CTGGTGTGTTTGGGATGGATTATATTATCTGGTGTGTTTGGGAGGATTATATGATA
Found at i:108205268 original size:23 final size:26
Alignment explanation
Indices: 108205159--108205277 Score: 138
Period size: 28 Copynumber: 4.5 Consensus size: 26
108205149 TTGTGCTATT
108205159 CTGGTGTGTTTTGGATGGATTAT-ATTA
1 CTGGTGTGTTTTGGA-GGATTATGA-TA
* *
108205186 TTTGGTGTGTTTGGGAGGATTATATGATA
1 -CTGGTGTGTTTTGGAGGA-T-TATGATA
*
108205215 CTGGTGTGTTTGGGAGGATTATGATA
1 CTGGTGTGTTTTGGAGGATTATGATA
108205241 CTGGTGTGTTTTGGAGGA-T-T-ATA
1 CTGGTGTGTTTTGGAGGATTATGATA
108205264 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
108205278 TTGGACATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
23 17 0.20
24 1 0.01
25 1 0.01
26 24 0.29
27 4 0.05
28 31 0.37
29 5 0.06
30 1 0.01
ACGTcount: A:0.17, C:0.03, G:0.35, T:0.45
Consensus pattern (26 bp):
CTGGTGTGTTTTGGAGGATTATGATA
Found at i:108205506 original size:22 final size:22
Alignment explanation
Indices: 108205466--108205550 Score: 88
Period size: 20 Copynumber: 4.0 Consensus size: 22
108205456 GCTTTACTGA
108205466 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCGTATT
* *
108205489 TCAGGCACTTGTGTGTCGCA--
1 TCAGGCACTTATGTGTCGTATT
* * *
108205509 GCAGGCACCTGTGTGTCG--TT
1 TCAGGCACTTATGTGTCGTATT
108205529 TCAGGCACTTATGTGTCGTATT
1 TCAGGCACTTATGTGTCGTATT
108205551 CTGATCAGGT
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
20 31 0.61
22 12 0.24
23 8 0.16
ACGTcount: A:0.15, C:0.21, G:0.27, T:0.36
Consensus pattern (22 bp):
TCAGGCACTTATGTGTCGTATT
Found at i:108212432 original size:19 final size:19
Alignment explanation
Indices: 108212380--108212442 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
108212370 CTTTAATAGT
* *
108212380 TAAAAATATATTTTAAATT-
1 TAAAAATA-ATATTATATTA
*
108212399 TAAAAATAATTTTAT-TTA
1 TAAAAATAATATTATATTA
108212417 TAAAATATAATATTATATTA
1 TAAAA-ATAATATTATATTA
108212437 TAAAAA
1 TAAAAA
108212443 ACAGTACTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 2 0.05
18 11 0.28
19 18 0.46
20 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAAAATAATATTATATTA
Found at i:108213314 original size:11 final size:11
Alignment explanation
Indices: 108213300--108213338 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
108213290 TTTCAATATT
108213300 CTCTCAAATTC
1 CTCTCAAATTC
108213311 CTCTCAAA-T-
1 CTCTCAAATTC
*
108213320 CTCTTAAATTC
1 CTCTCAAATTC
108213331 CTCTCAAA
1 CTCTCAAA
108213339 ACTCTCGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 7 0.29
10 2 0.08
11 15 0.62
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.36
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:108213328 original size:20 final size:20
Alignment explanation
Indices: 108213299--108213344 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
108213289 CTTTCAATAT
108213299 TCTCTCAAATTCCTCTCAAA
1 TCTCTCAAATTCCTCTCAAA
*
108213319 TCTCTTAAATTCCTCTCAAA
1 TCTCTCAAATTCCTCTCAAA
*
108213339 ACTCTC
1 TCTCTC
108213345 GTTAATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.37
Consensus pattern (20 bp):
TCTCTCAAATTCCTCTCAAA
Found at i:108215064 original size:30 final size:30
Alignment explanation
Indices: 108215023--108215088 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
108215013 CGACGACGCA
* *
108215023 GGCCCATCAACAGCCCCCACACAATCACCC
1 GGCCCAGCAACAGCACCCACACAATCACCC
* * * *
108215053 GGCCCAGCAACAGGACCTACACAGTCACCG
1 GGCCCAGCAACAGCACCCACACAATCACCC
108215083 GGCCCA
1 GGCCCA
108215089 ATAGTTCAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.47, G:0.18, T:0.06
Consensus pattern (30 bp):
GGCCCAGCAACAGCACCCACACAATCACCC
Found at i:108215165 original size:18 final size:18
Alignment explanation
Indices: 108215142--108215184 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
108215132 TGCCAGGTAC
*
108215142 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
108215160 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
108215178 GTTTCCT
1 GTATCCT
108215185 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:108215773 original size:116 final size:115
Alignment explanation
Indices: 108215569--108215834 Score: 435
Period size: 116 Copynumber: 2.3 Consensus size: 115
108215559 TATTTGTACA
* *
108215569 AACATTTTGAATC-TTTTTATATTATTTATATAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAA-CATTTTTATATTATTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * *
108215633 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTTAAATAAGGC
65 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTA-TTTTAAATAAAGC
108215685 AACATTTTGAACATTTTTATATTATTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATT
1 AACATTTTGAACATTTTTATATTATTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATT
108215750 ATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 ATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
* *
108215800 AACATTCTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAACATTTTTATATTA-TTCATGTAAT
108215835 AAAATATAAA
Statistics
Matches: 141, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
115 35 0.25
116 106 0.75
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.47
Consensus pattern (115 bp):
AACATTTTGAACATTTTTATATTATTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATT
ATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
Found at i:108215839 original size:55 final size:55
Alignment explanation
Indices: 108215665--108215839 Score: 126
Period size: 55 Copynumber: 3.1 Consensus size: 55
108215655 AATAAAATGG
* * *
108215665 AAATTATTTTTAAATAAGGCAACATTTTGAACATTTTTATATTA-TTCATGTAATTAGATA
1 AAATTA-TTTTAAATAAAGCAACATTATGAATATTTTTATATTATTTCATG----TA-ATA
* * * * **
108215725 AAAGGTTGTTTTAAATAAAG-TA-ATTAT-AATTTACTTTTATATT-TTTAATAAAATGA
1 AAA--TTATTTTAAATAAAGCAACATTATGAA--TATTTTTATATTATTTCATGTAAT-A
*
108215781 AAATTATTTTAAATAAAGCAACATTCTGAATATTTTTATATTATTTCATGTAATA
1 AAATTATTTTAAATAAAGCAACATTATGAATATTTTTATATTATTTCATGTAATA
108215836 AAAT
1 AAAT
108215840 ATAAATAATA
Statistics
Matches: 89, Mismatches: 16, Indels: 25
0.68 0.12 0.19
Matches are distributed among these distances:
54 14 0.16
55 19 0.21
56 17 0.19
57 2 0.02
58 2 0.02
59 4 0.04
60 18 0.20
61 11 0.12
62 2 0.02
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (55 bp):
AAATTATTTTAAATAAAGCAACATTATGAATATTTTTATATTATTTCATGTAATA
Found at i:108219393 original size:126 final size:126
Alignment explanation
Indices: 108218847--108219385 Score: 729
Period size: 126 Copynumber: 4.3 Consensus size: 126
108218837 GCCCAAGTTA
* * * *
108218847 TTTCAGAAACCACTGTAGCAAAAGAGCTTCCACGTGGGAGATTATTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * ** *
108218912 TGCACCCTGTTTGAAGCGTTTTTGACACTATTTATGCAGACACATCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * *
108218973 TTTCAGAGACCACTATAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * *
108219038 TGTATCCTGCTTGAAGCATTTTT-ACCACTATTTGCGCAGACACGTCTTCTTAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * * * * *
108219099 TTTCAGAGACTACTGTAGTAAAAGAGCGCCCACGTAGAAGCTTCTTTTAGTACTTTTGCTGACAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * **
108219164 TTCATCCTGCTTGAAGCGTTTTTTACACTATTTGCATAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * *
108219225 TTTCAGATACAACTGTAGCAAAATAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * * *
108219290 TGCATCTTGCTTGAAGCGTTTTCGACACTATTTGTGCAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* *
108219351 TTTCAGAGACTACTGTAGCAAAAGAGCGTCTACGT
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGT
108219386 AGAAGCTTTT
Statistics
Matches: 359, Mismatches: 52, Indels: 4
0.87 0.13 0.01
Matches are distributed among these distances:
125 1 0.00
126 357 0.99
127 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:108219489 original size:15 final size:15
Alignment explanation
Indices: 108219469--108219497 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
108219459 TTCTTAAATG
108219469 CCCTAAAATCCTAAA
1 CCCTAAAATCCTAAA
108219484 CCCTAAAATCCTAA
1 CCCTAAAATCCTAA
108219498 TCTATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAAATCCTAAA
Found at i:108220144 original size:17 final size:16
Alignment explanation
Indices: 108220115--108220148 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
108220105 AGGAATATAG
108220115 TAAAATTTAAAAAAAA
1 TAAAATTTAAAAAAAA
108220131 TAAATATTTTAAAAAAAA
1 TAAA-A-TTTAAAAAAAA
108220149 GAAACACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 1 0.06
18 11 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAAATTTAAAAAAAA
Found at i:108220651 original size:15 final size:16
Alignment explanation
Indices: 108220625--108220654 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
108220615 AACAAACCAA
108220625 CAAAACCAAAATAAAG
1 CAAAACCAAAATAAAG
108220641 CAAAA-CAAAATAAA
1 CAAAACCAAAATAAA
108220655 AAATATCTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.17, G:0.03, T:0.07
Consensus pattern (16 bp):
CAAAACCAAAATAAAG
Found at i:108223196 original size:49 final size:49
Alignment explanation
Indices: 108223124--108223217 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
108223114 TGCTATACAA
*
108223124 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCACTATTTATATAT
1 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATATAT
*
108223173 TGCTAAACTTAGTCTTCCACTGTCTACATTCTTATCACTATTTAT
1 TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
108223218 CCCTTATTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.44
Consensus pattern (49 bp):
TGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATATAT
Found at i:108224552 original size:43 final size:43
Alignment explanation
Indices: 108224502--108224587 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
108224492 TCATATCTCA
108224502 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
* * *
108224545 TTTCTCATCTCATATTCATTTCTCATCTTTGCCGTTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
108224588 CAATCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.24, G:0.03, T:0.50
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:108228409 original size:52 final size:52
Alignment explanation
Indices: 108228311--108228409 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
108228301 ACATGTGAAG
* *
108228311 CATCCGAGCTCGTTGAGTTGGTTCGAGTTCATAATGGATACGATACAAGTGA
1 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATACAATACAAGTGA
* * *
108228363 CATCCGAGCTCGTTGAGTTGGTCCGATTTCATTATGGATGCAATACA
1 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATACAATACA
108228410 TGTAATTAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (52 bp):
CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATACAATACAAGTGA
Found at i:108232549 original size:9 final size:9
Alignment explanation
Indices: 108232537--108232687 Score: 60
Period size: 10 Copynumber: 16.1 Consensus size: 9
108232527 AAAATTAGAA
108232537 AAAAATTAT
1 AAAAATTAT
108232546 AAAAA--AT
1 AAAAATTAT
* *
108232553 TAAAATCAAT
1 AAAAAT-TAT
**
108232563 AAAAGCTAT
1 AAAAATTAT
*
108232572 AAATATTATT
1 AAAAATTA-T
**
108232582 AAATTTTAAT
1 AAAAATT-AT
108232592 AAAAAATTATT
1 A-AAAATTA-T
108232603 AAAAA-TAT
1 AAAAATTAT
*
108232611 AAAAAATTGT
1 -AAAAATTAT
*
108232621 AAAATTTTAT
1 AAAA-ATTAT
*
108232631 AAAAATCAT
1 AAAAATTAT
108232640 AAAAA-TATT
1 AAAAATTA-T
108232649 ATAAAATATAT
1 A-AAAAT-TAT
* *
108232660 AGAAATATAA
1 AAAAAT-TAT
108232670 AAAAATTAT
1 AAAAATTAT
108232679 -AAAATTAT
1 AAAAATTAT
108232687 A
1 A
108232688 TTAAGTCTTA
Statistics
Matches: 106, Mismatches: 21, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
7 6 0.06
8 10 0.09
9 35 0.33
10 44 0.42
11 9 0.08
12 2 0.02
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:108232623 original size:29 final size:27
Alignment explanation
Indices: 108232591--108232687 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
108232581 TAAATTTTAA
108232591 TAAAAAATTATTAAAAATATAAAAAATT
1 TAAAAAATTA-TAAAAATATAAAAAATT
**
108232619 GTAAAATTTTATAAAAATCAT-AAAAATAT
1 -TAAAAAATTATAAAAAT-ATAAAAAAT-T
* * *
108232648 TATAAAATATATAGAAATATAAAAAAAT
1 TAAAAAAT-TATAAAAATATAAAAAATT
*
108232676 TATAAAATTATA
1 TAAAAAATTATA
108232688 TTAAGTCTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
27 4 0.07
28 29 0.51
29 24 0.42
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAAAATTATAAAAATATAAAAAATT
Found at i:108232634 original size:28 final size:28
Alignment explanation
Indices: 108232594--108232688 Score: 122
Period size: 29 Copynumber: 3.4 Consensus size: 28
108232584 ATTTTAATAA
*
108232594 AAAATTAT-TAAAAATATAAAAAATTGT
1 AAAATTATATAAAAATATAAAAAATTAT
*
108232621 AAAATTTTATAAAAATCATAAAAATATTAT
1 AAAATTATATAAAAAT-ATAAAAA-ATTAT
*
108232651 AAAA-TATATAGAAATATAAAAAAATTAT
1 AAAATTATATAAAAATAT-AAAAAATTAT
108232679 AAAATTATAT
1 AAAATTATAT
108232689 TAAGTCTTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.12
28 18 0.31
29 26 0.44
30 8 0.14
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (28 bp):
AAAATTATATAAAAATATAAAAAATTAT
Found at i:108232656 original size:10 final size:10
Alignment explanation
Indices: 108232572--108232683 Score: 74
Period size: 10 Copynumber: 11.4 Consensus size: 10
108232562 TAAAAGCTAT
*
108232572 AAATATTATT
1 AAATATTATA
*
108232582 AAATTTTAATA
1 AAATATT-ATA
*
108232593 AAAAATTATTA
1 AAATATTA-TA
108232604 AAA-A-TATA
1 AAATATTATA
* *
108232612 AAAAATTGTA
1 AAATATTATA
*
108232622 AAATTTTATA
1 AAATATTATA
*
108232632 AAA-ATCATAA
1 AAATATTAT-A
108232642 AAATATTATA
1 AAATATTATA
108232652 AAATA-TATA
1 AAATATTATA
108232661 GAAATA-TA-A
1 -AAATATTATA
*
108232670 AAAAATTATA
1 AAATATTATA
108232680 AAAT
1 AAAT
108232684 TATATTAAGT
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
8 9 0.11
9 13 0.16
10 42 0.52
11 16 0.20
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (10 bp):
AAATATTATA
Found at i:108232967 original size:10 final size:10
Alignment explanation
Indices: 108232952--108233008 Score: 64
Period size: 10 Copynumber: 5.9 Consensus size: 10
108232942 AAAAAAATTC
108232952 TAATTTTTAA
1 TAATTTTTAA
*
108232962 TAATTTTTTA
1 TAATTTTTAA
108232972 -AATTTTTAA
1 TAATTTTTAA
*
108232981 -AATTTTTAT
1 TAATTTTTAA
**
108232990 TAAAATTTAA
1 TAATTTTTAA
108233000 TAATTTTTA
1 TAATTTTTA
108233009 TAAAATTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
9 16 0.42
10 22 0.58
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:108232975 original size:9 final size:9
Alignment explanation
Indices: 108232953--108232988 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
108232943 AAAAAATTCT
108232953 AATTTTTAA
1 AATTTTTAA
*
108232962 TAATTTTTTA
1 -AATTTTTAA
108232972 AATTTTTAA
1 AATTTTTAA
108232981 AATTTTTA
1 AATTTTTA
108232989 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
AATTTTTAA
Found at i:108233013 original size:19 final size:19
Alignment explanation
Indices: 108232957--108233046 Score: 87
Period size: 19 Copynumber: 4.7 Consensus size: 19
108232947 AATTCTAATT
*
108232957 TTTAATAATTTTT-TAAATT
1 TTTAATAATTTTTATAAA-A
108232976 TTTAA-AATTTTTATTAAAA
1 TTTAATAATTTTTA-TAAAA
108232995 TTTAATAATTTTTATAAAA
1 TTTAATAATTTTTATAAAA
* *
108233014 TTT-ATTATTTGTTATAAAT
1 TTTAATAATTT-TTATAAAA
**
108233033 TTTTCTAATTTTTA
1 TTTAATAATTTTTA
108233047 ATATTAGCAT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
18 13 0.21
19 31 0.51
20 17 0.28
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (19 bp):
TTTAATAATTTTTATAAAA
Found at i:108233046 original size:29 final size:28
Alignment explanation
Indices: 108232952--108233051 Score: 78
Period size: 29 Copynumber: 3.5 Consensus size: 28
108232942 AAAAAAATTC
*
108232952 TAATTTTTAATAATTTTT-TAAATTTTTA
1 TAATTTTT-ATTATTTTTATAAATTTTTA
* **
108232980 AAATTTTTATTAAAATTTA-ATAATTTTTA
1 TAATTTTTATT-ATTTTTATA-AATTTTTA
** *
108233009 TAAAATTTATTATTTGTTATAAATTTTTC
1 TAATTTTTATTATTT-TTATAAATTTTTA
*
108233038 TAATTTTTAATATT
1 TAATTTTTATTATT
108233052 AGCATGGGCT
Statistics
Matches: 54, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
27 2 0.04
28 14 0.26
29 37 0.69
30 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (28 bp):
TAATTTTTATTATTTTTATAAATTTTTA
Found at i:108244127 original size:6 final size:6
Alignment explanation
Indices: 108244116--108244153 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
108244106 TAGTACAAAT
*
108244116 AATAAA AATAAA AATAAA AATAAA AATAAA AACAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AA
108244154 AATAAGAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AATAAA
Found at i:108244137 original size:18 final size:18
Alignment explanation
Indices: 108244110--108244153 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
108244100 AAAAACTAGT
108244110 ACAAATAATAAAAATAAAA
1 ACAAA-AATAAAAATAAAA
*
108244129 ATAAAAATAAAAATAAAA
1 ACAAAAATAAAAATAAAA
108244147 ACAAAAA
1 ACAAAAA
108244154 AATAAGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAAAAATAAAAATAAAA
Found at i:108244154 original size:26 final size:26
Alignment explanation
Indices: 108244112--108244196 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 26
108244102 AAACTAGTAC
108244112 AAATAATAAA-AATAAAAATAAAAATAA
1 AAATAA-AAACAA-AAAAATAAAAATAA
*
108244139 AAATAAAAACAAAAAAATAAGAATAA
1 AAATAAAAACAAAAAAATAAAAATAA
* * * * *
108244165 GAATAAATAC-CAAAAAGAAAGAT-A
1 AAATAAAAACAAAAAAATAAAAATAA
108244189 AAATAAAA
1 AAATAAAA
108244197 TAAATCAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
24 7 0.15
25 9 0.19
26 24 0.50
27 8 0.17
ACGTcount: A:0.78, C:0.04, G:0.05, T:0.14
Consensus pattern (26 bp):
AAATAAAAACAAAAAAATAAAAATAA
Found at i:108248421 original size:14 final size:14
Alignment explanation
Indices: 108248402--108248428 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
108248392 GCAAACAAAA
108248402 TAAAAATTAAATTG
1 TAAAAATTAAATTG
108248416 TAAAAATTAAATT
1 TAAAAATTAAATT
108248429 AAAACAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
TAAAAATTAAATTG
Found at i:108248427 original size:25 final size:25
Alignment explanation
Indices: 108248398--108248456 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
108248388 AGAAGCAAAC
** * *
108248398 AAAATAAAAATTAAATTGTAAAAAT
1 AAAATAAAAACAAAAATATAAAAAT
* *
108248423 TAAATTAAAACAAAAATATAAAAAT
1 AAAATAAAAACAAAAATATAAAAAT
108248448 AAAATAAAA
1 AAAATAAAA
108248457 TAAAATTACT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (25 bp):
AAAATAAAAACAAAAATATAAAAAT
Found at i:108249969 original size:56 final size:56
Alignment explanation
Indices: 108249883--108249999 Score: 234
Period size: 56 Copynumber: 2.1 Consensus size: 56
108249873 CCTGATAGCC
108249883 AAACAATAGTGGTTACCCAAGAAGGAATAGTTAAATTGACGAACAAAATTCACTTA
1 AAACAATAGTGGTTACCCAAGAAGGAATAGTTAAATTGACGAACAAAATTCACTTA
108249939 AAACAATAGTGGTTACCCAAGAAGGAATAGTTAAATTGACGAACAAAATTCACTTA
1 AAACAATAGTGGTTACCCAAGAAGGAATAGTTAAATTGACGAACAAAATTCACTTA
108249995 AAACA
1 AAACA
108250000 CGTTCTTTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (56 bp):
AAACAATAGTGGTTACCCAAGAAGGAATAGTTAAATTGACGAACAAAATTCACTTA
Found at i:108253139 original size:56 final size:56
Alignment explanation
Indices: 108253050--108253203 Score: 229
Period size: 56 Copynumber: 2.8 Consensus size: 56
108253040 GGAATGTTAG
* * *
108253050 GATATTATTATGAGATATTATCTTTTAGTAATTTGATTCCTAATGGGATGTTATAA
1 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAA
* ** *
108253106 GATATTATTATTG-GATATTCTCTCCTAGCAATTTGATTCCTAATGAGATATTATAT
1 GATATTATTA-TGAGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAA
108253162 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTA
1 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTA
108253204 TACATCTCCT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 2 0.02
56 82 0.95
57 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (56 bp):
GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAA
Found at i:108253811 original size:15 final size:16
Alignment explanation
Indices: 108253784--108253816 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
108253774 TGAAATTTTC
*
108253784 TTAAAAAATCCAATAT
1 TTAAAAAATCCAAAAT
108253800 TTAAAAAA-CCAAAAT
1 TTAAAAAATCCAAAAT
108253815 TT
1 TT
108253817 TCATATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAAAAAATCCAAAAT
Found at i:108262218 original size:54 final size:55
Alignment explanation
Indices: 108262097--108262218 Score: 133
Period size: 54 Copynumber: 2.2 Consensus size: 55
108262087 AAAATCTAAG
* *
108262097 ATAGTTGGGTGACAAAAAAAAATCGAATAGTTGAATGAACATATTGTAACTTTTT
1 ATAGTTGGGTGACAAAAAAAAATCGAATAATTGAATGAACATATTATAACTTTTT
** * * * *
108262152 ATAGTTAAGTGACAAAAAAATA-CTAATAATTGAGT-AACCATTTTATAACTTTTCT
1 ATAGTTGGGTGACAAAAAAAAATCGAATAATTGAATGAA-CATATTATAACTTTT-T
108262207 -TAGTTGGGTGAC
1 ATAGTTGGGTGAC
108262219 TACTAATGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 2 0.04
54 33 0.60
55 20 0.36
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.34
Consensus pattern (55 bp):
ATAGTTGGGTGACAAAAAAAAATCGAATAATTGAATGAACATATTATAACTTTTT
Found at i:108263084 original size:15 final size:15
Alignment explanation
Indices: 108263064--108263115 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
108263054 ACTACAAAAC
108263064 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
108263079 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
108263098 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
108263113 ATT
1 ATT
108263116 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:108263252 original size:16 final size:15
Alignment explanation
Indices: 108263226--108263256 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
108263216 TTTTAATAAA
108263226 TAATATTTATTATAT
1 TAATATTTATTATAT
108263241 TAATAGTTTATTATAT
1 TAATA-TTTATTATAT
108263257 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TAATATTTATTATAT
Found at i:108263760 original size:31 final size:32
Alignment explanation
Indices: 108263722--108263795 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 32
108263712 TTTTATTTGA
* *
108263722 TCAATTTTAGTCCTTATA-TTTTTCGAATTGG
1 TCAATTTTAGTCATTATACTTTTTCAAATTGG
* *
108263753 TCAATTTTAGTCATTGTACTTTTTCAAATTTG
1 TCAATTTTAGTCATTATACTTTTTCAAATTGG
*
108263785 -AAATTTTAGTC
1 TCAATTTTAGTC
108263796 TTGACCCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 26 0.70
32 11 0.30
ACGTcount: A:0.26, C:0.12, G:0.11, T:0.51
Consensus pattern (32 bp):
TCAATTTTAGTCATTATACTTTTTCAAATTGG
Found at i:108269794 original size:46 final size:46
Alignment explanation
Indices: 108269742--108270104 Score: 502
Period size: 46 Copynumber: 8.0 Consensus size: 46
108269732 GCTATCTGAA
** *
108269742 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
108269788 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-ACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
108269833 ATGAAATGTGTAAGACCATGGTT-AAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
108269878 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
108269923 -TGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 AT-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
108269969 ATAAAATGAATAAGACCATGATTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
108270015 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
108270061 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
108270105 TCAAAGATAA
Statistics
Matches: 291, Mismatches: 20, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
44 29 0.10
45 67 0.23
46 194 0.67
47 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:108278789 original size:29 final size:29
Alignment explanation
Indices: 108278746--108278807 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
108278736 ACCCAGAGTA
* *
108278746 TGTCTTATATGGTCTAGCATATGGTCGTG
1 TGTCTTATATGGTCTAGCATACGGCCGTG
*
108278775 TGTCTTATACT-GTCTAGTATACGGCCGTG
1 TGTCTTATA-TGGTCTAGCATACGGCCGTG
108278804 TGTC
1 TGTC
108278808 ACACATGGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 28 0.97
30 1 0.03
ACGTcount: A:0.16, C:0.18, G:0.26, T:0.40
Consensus pattern (29 bp):
TGTCTTATATGGTCTAGCATACGGCCGTG
Found at i:108280063 original size:29 final size:29
Alignment explanation
Indices: 108280018--108280082 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
108280008 GAACCAGACA
* *
108280018 GTGTGTCTTACATGGTCTAGCACATGGCC
1 GTGTGTCTTACACGGTCTAGCACACGGCC
* * *
108280047 GTGTGTCTTATACGGTCTAGTATACGGCC
1 GTGTGTCTTACACGGTCTAGCACACGGCC
108280076 GTGTGTC
1 GTGTGTC
108280083 ACACATAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.15, C:0.22, G:0.29, T:0.34
Consensus pattern (29 bp):
GTGTGTCTTACACGGTCTAGCACACGGCC
Found at i:108285466 original size:27 final size:27
Alignment explanation
Indices: 108285426--108285478 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
108285416 ATATAAAAGA
* * *
108285426 TAATAATAGTTTCGATTGAACGCTCGC
1 TAATAATAGATTCGATCGAACCCTCGC
*
108285453 TAATAATGGATTCGATCGAACCCTCG
1 TAATAATAGATTCGATCGAACCCTCG
108285479 TGAGTATATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (27 bp):
TAATAATAGATTCGATCGAACCCTCGC
Found at i:108286895 original size:2 final size:2
Alignment explanation
Indices: 108286888--108286920 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
108286878 AATACTTCAG
108286888 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108286921 TTATTGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108292449 original size:30 final size:30
Alignment explanation
Indices: 108292413--108292474 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
108292403 AATTTAACAA
108292413 AAATGTCTCTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
*
108292443 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
108292473 AA
1 AA
108292475 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAC
Found at i:108292529 original size:22 final size:22
Alignment explanation
Indices: 108292504--108292546 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
108292494 TATCCAAACA
108292504 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
108292526 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
108292547 AGTAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:108294715 original size:16 final size:16
Alignment explanation
Indices: 108294691--108294741 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
108294681 GGTTCACTGA
*
108294691 AATGGAATAGGGTTGT
1 AATGGAATAGAGTTGT
* *
108294707 AATGTAATAGAGATGT
1 AATGGAATAGAGTTGT
108294723 AATGGAATAGAGTTGT
1 AATGGAATAGAGTTGT
108294739 AAT
1 AAT
108294742 CAATAATTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.31
Consensus pattern (16 bp):
AATGGAATAGAGTTGT
Found at i:108302640 original size:40 final size:40
Alignment explanation
Indices: 108302596--108302723 Score: 193
Period size: 40 Copynumber: 3.1 Consensus size: 40
108302586 TTAAGTCCGG
* * * *
108302596 ATATAGTACCATCACTAAGCCTGTGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
108302638 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
108302678 ATATATTACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
108302718 ATATAT
1 ATATAT
108302724 ATTATATCGA
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 47 0.58
42 34 0.42
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:108302658 original size:42 final size:42
Alignment explanation
Indices: 108302596--108302727 Score: 205
Period size: 42 Copynumber: 3.2 Consensus size: 42
108302586 TTAAGTCCGG
* * * *
108302596 ATATAGTACCATCACTAAGCCTGTGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
108302638 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
108302678 ATATATTACCAGCACGAAGCCTGCGAGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
108302720 ATATATTA
1 ATATATTA
108302728 TATCGAGAGC
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
40 39 0.47
42 44 0.53
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:108305843 original size:24 final size:24
Alignment explanation
Indices: 108305816--108305865 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
108305806 ATATATAAGT
108305816 AGATTTATCATGTTAGAAATATTG
1 AGATTTATCATGTTAGAAATATTG
108305840 AGATTTATCATGTTAGAAATATTG
1 AGATTTATCATGTTAGAAATATTG
108305864 AG
1 AG
108305866 CTTGATTACG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (24 bp):
AGATTTATCATGTTAGAAATATTG
Found at i:108314488 original size:5 final size:5
Alignment explanation
Indices: 108314478--108314506 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
108314468 TAGTAATAAT
108314478 AATTA AATTA AATTA AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATT
108314507 GCAAGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATTA
Found at i:108329921 original size:25 final size:24
Alignment explanation
Indices: 108329893--108329942 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
108329883 ACCTTTCTCA
*
108329893 TCTCTTCACTTCTC-TCTCATTTTTC
1 TCTCTTCA-TTCCCTTCT-ATTTTTC
108329918 TCTCTTCATTCCCTTCTATTTTTC
1 TCTCTTCATTCCCTTCTATTTTTC
108329942 T
1 T
108329943 TCATTCTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.08, C:0.34, G:0.00, T:0.58
Consensus pattern (24 bp):
TCTCTTCATTCCCTTCTATTTTTC
Found at i:108331639 original size:16 final size:16
Alignment explanation
Indices: 108331618--108331652 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
108331608 GTTTGATACA
* *
108331618 GGCTGGGTTGGGCTTG
1 GGCTGGGTTAGGCTCG
108331634 GGCTGGGTTAGGCTCG
1 GGCTGGGTTAGGCTCG
108331650 GGC
1 GGC
108331653 GTAGCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.17, G:0.54, T:0.26
Consensus pattern (16 bp):
GGCTGGGTTAGGCTCG
Found at i:108333865 original size:80 final size:81
Alignment explanation
Indices: 108333770--108333919 Score: 221
Period size: 80 Copynumber: 1.9 Consensus size: 81
108333760 GCCCCTATTT
* * * * **
108333770 TTTTTTTGCACTCAATTGGGTACTTAAACTGCCAAAATGCAT-AAAAAGACCCTTAACTTAAAAA
1 TTTTTTGGAACTCAATTAGGTACTTAAACTGCCAAAATACATCAAAAAGACCCCAAACTTAAAAA
108333834 AAAAATTAAACCCTAC
66 AAAAATTAAACCCTAC
* *
108333850 TTTTTTGGAACTCAATTAGGTACTTGAACTGCCAAAATACATCAAAAAGCCCCCAAACTTAAAAA
1 TTTTTTGGAACTCAATTAGGTACTTAAACTGCCAAAATACATCAAAAAGACCCCAAACTTAAAAA
108333915 AAAAA
66 AAAAA
108333920 CAAAAAACAA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
80 37 0.61
81 24 0.39
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (81 bp):
TTTTTTGGAACTCAATTAGGTACTTAAACTGCCAAAATACATCAAAAAGACCCCAAACTTAAAAA
AAAAATTAAACCCTAC
Found at i:108334358 original size:34 final size:34
Alignment explanation
Indices: 108334320--108334391 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
108334310 CATCTTCTTT
* * *
108334320 CTCTCTTTCTTTCTTTCTCAGGCAAATCTCATTC
1 CTCTCTTTCTGTCTTTCCCAGACAAATCTCATTC
108334354 CTCTCTTTCTGTCTTTCCCAGACAAATCTCATTC
1 CTCTCTTTCTGTCTTTCCCAGACAAATCTCATTC
108334388 CTCT
1 CTCT
108334392 TCATAGGGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.15, C:0.35, G:0.06, T:0.44
Consensus pattern (34 bp):
CTCTCTTTCTGTCTTTCCCAGACAAATCTCATTC
Found at i:108335033 original size:2 final size:2
Alignment explanation
Indices: 108335026--108335067 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
108335016 ATTAACTTGC
108335026 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108335068 GCCTCAACCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108337505 original size:2 final size:2
Alignment explanation
Indices: 108337498--108337529 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
108337488 ATAAATTTAT
108337498 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
108337530 ATAAACTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:108337689 original size:19 final size:19
Alignment explanation
Indices: 108337665--108337702 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
108337655 TATCCAAACA
108337665 CTAGAAAAGTAAATCATTT
1 CTAGAAAAGTAAATCATTT
108337684 CTAGAAAAGTAAATCATTT
1 CTAGAAAAGTAAATCATTT
108337703 TCCAGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (19 bp):
CTAGAAAAGTAAATCATTT
Found at i:108337709 original size:20 final size:19
Alignment explanation
Indices: 108337667--108337711 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
108337657 TCCAAACACT
*
108337667 AGAAAAGTAAATCATTTCT
1 AGAAAAGTAAATCATTTCC
108337686 AGAAAAGTAAATCATTTTCC
1 AGAAAAGTAAATCA-TTTCC
108337706 AGAAAA
1 AGAAAA
108337712 TATTTTTCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTCC
Found at i:108338005 original size:20 final size:20
Alignment explanation
Indices: 108337976--108338019 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
108337966 CCTTTGGCCT
108337976 TTAACCTTAACAATTGACTA
1 TTAACCTTAACAATTGACTA
*
108337996 TTAACTTTAACAATTGACTA
1 TTAACCTTAACAATTGACTA
108338016 TTAA
1 TTAA
108338020 AGTTAACGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (20 bp):
TTAACCTTAACAATTGACTA
Found at i:108338025 original size:20 final size:20
Alignment explanation
Indices: 108337982--108338026 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
108337972 GCCTTTAACC
**
108337982 TTAACAATTGACTATTAACT
1 TTAACAATTGACTATTAAAG
108338002 TTAACAATTGACTATTAAAG
1 TTAACAATTGACTATTAAAG
108338022 TTAAC
1 TTAAC
108338027 GGCCTAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (20 bp):
TTAACAATTGACTATTAAAG
Found at i:108339207 original size:55 final size:55
Alignment explanation
Indices: 108339123--108339233 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
108339113 AGGAATTAGT
*
108339123 TATAATCACCAAAGCGAGCTAATCACCGATGTCTAGATTTGATTAATTTTATAAA
1 TATAATCACCAAAGCGAGCTAATCACCGATGTCTAGATTTGATTAATTTTACAAA
*
108339178 TATAATCACCAAAGCGAGCTAATCACCGATGTCTAGATTTGTTTAATTTTACAAA
1 TATAATCACCAAAGCGAGCTAATCACCGATGTCTAGATTTGATTAATTTTACAAA
108339233 T
1 T
108339234 TAAGTGTTCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (55 bp):
TATAATCACCAAAGCGAGCTAATCACCGATGTCTAGATTTGATTAATTTTACAAA
Found at i:108339614 original size:8 final size:9
Alignment explanation
Indices: 108339600--108339711 Score: 73
Period size: 9 Copynumber: 11.7 Consensus size: 9
108339590 GATAAAACAA
108339600 ATAAAAATT
1 ATAAAAATT
108339609 ATAAAAATT
1 ATAAAAATT
**
108339618 ATTAAATTTT
1 A-TAAAAATT
*
108339628 AATAAAAATC
1 -ATAAAAATT
* *
108339638 GTATAAATT
1 ATAAAAATT
108339647 ATTAAAAATT
1 A-TAAAAATT
*
108339657 GTAAAAATT
1 ATAAAAATT
108339666 ATAAAAAATT
1 AT-AAAAATT
108339676 GAT-AAAATAT
1 -ATAAAAAT-T
*
108339686 ATAGAAATAT
1 ATAAAAAT-T
*
108339696 AGAAAAAATT
1 A-TAAAAATT
108339706 ATAAAA
1 ATAAAA
108339712 TCGTATTATA
Statistics
Matches: 79, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
9 36 0.46
10 35 0.44
11 8 0.10
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:108339675 original size:29 final size:29
Alignment explanation
Indices: 108339599--108339672 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
108339589 AGATAAAACA
**
108339599 AATAAAAATTATAAAAATTATTAAATTTT
1 AATAAAAATTATAAAAATTATTAAAAATT
** *
108339628 AATAAAAATCGTATAAATTATTAAAAATT
1 AATAAAAATTATAAAAATTATTAAAAATT
*
108339657 -GTAAAAATTATAAAAA
1 AATAAAAATTATAAAAA
108339673 ATTGATAAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
28 12 0.33
29 24 0.67
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (29 bp):
AATAAAAATTATAAAAATTATTAAAAATT
Found at i:108339683 original size:19 final size:19
Alignment explanation
Indices: 108339603--108339711 Score: 73
Period size: 19 Copynumber: 5.6 Consensus size: 19
108339593 AAAACAAATA
108339603 AAAATTAT-AAAAATT-AT
1 AAAATTATAAAAAATTGAT
* * *
108339620 TAAATTTTAATAAAAATCG-T
1 AAAATTAT-A-AAAAATTGAT
*
108339640 ATAAATTATTAAAAATTG-T
1 A-AAATTATAAAAAATTGAT
108339659 AAAAATTATAAAAAATTGAT
1 -AAAATTATAAAAAATTGAT
* * *
108339679 AAAATATATAGAAATATAGAA
1 AAAAT-TATA-AAAAATTGAT
108339700 AAAATTATAAAA
1 AAAATTATAAAA
108339712 TCGTATTATA
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
17 6 0.08
19 31 0.43
20 17 0.24
21 18 0.25
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAATTATAAAAAATTGAT
Found at i:108340675 original size:24 final size:24
Alignment explanation
Indices: 108340622--108340675 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
108340612 TTAGTAATAT
* *
108340622 TTTTTTCTCTGTCTTTTGACACGC
1 TTTTCTCTCTGTCTTTTAACACGC
* * *
108340646 TCTTCTCTCTGTTTTTTAACAGGC
1 TTTTCTCTCTGTCTTTTAACACGC
108340670 TTTTCT
1 TTTTCT
108340676 GCTTGTTAGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.09, C:0.24, G:0.11, T:0.56
Consensus pattern (24 bp):
TTTTCTCTCTGTCTTTTAACACGC
Found at i:108351040 original size:22 final size:22
Alignment explanation
Indices: 108350994--108351040 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
108350984 ATTAAGACTT
* *
108350994 TTTTATTTTTAATTTTATCTTA
1 TTTTATTTTAAATTTTATCTAA
108351016 TTTTATTTTAAAATTTTAT-TAA
1 TTTTATTTT-AAATTTTATCTAA
108351038 TTT
1 TTT
108351041 AGATTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTATTTTAAATTTTATCTAA
Found at i:108352382 original size:132 final size:131
Alignment explanation
Indices: 108352231--108352533 Score: 335
Period size: 131 Copynumber: 2.3 Consensus size: 131
108352221 CAAGAAATCA
* * * ** * *
108352231 CAACCCAGCACGATGGGGCATGATT-TTCGAATTG-TCAAATGCCAAATATTGCCTTCGTTTTAA
1 CAACCCAACACGTTAGGGCATGATTCCGCGAATTGCT-AAATACCAAATATCGCCTTCGTTTTAA
* * * * * *
108352294 ATTATTTTTAGAAGATATGAAAG-GAAATTTTGAAGGGATACTCGATTATTTTGAGCAAACGCAA
65 A-GAATATTAAAAGACATG--AGTGAAATTTTAAAGGGATACTCGATTATTTTGAGCAAACGCAA
108352358 AATTG
127 AATTG
* * * * *
108352363 CAACCCAACACGTTAGGGCATGATTCCGCGAATTGCTAAATATCGAATCTCGTCTTCGTTTTGAA
1 CAACCCAACACGTTAGGGCATGATTCCGCGAATTGCTAAATACCAAATATCGCCTTCGTTTTAAA
* * *
108352428 GAATATTAAAAGACATGAGTGAAATTTTAAAGTGATATTCGATTATTTTGAGCAAACGTAAAATT
66 GAATATTAAAAGACATGAGTGAAATTTTAAAGGGATACTCGATTATTTTGAGCAAACGCAAAATT
108352493 G
131 G
*
108352494 CAACCCAACACGTTAGGGCACT-ATTTCGCGAATTGCTAAA
1 CAACCCAACACGTTAGGGCA-TGATTCCGCGAATTGCTAAA
108352534 GATCGAATCT
Statistics
Matches: 145, Mismatches: 22, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
130 2 0.01
131 79 0.54
132 35 0.24
133 28 0.19
134 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (131 bp):
CAACCCAACACGTTAGGGCATGATTCCGCGAATTGCTAAATACCAAATATCGCCTTCGTTTTAAA
GAATATTAAAAGACATGAGTGAAATTTTAAAGGGATACTCGATTATTTTGAGCAAACGCAAAATT
G
Found at i:108352485 original size:131 final size:131
Alignment explanation
Indices: 108352317--108352562 Score: 395
Period size: 131 Copynumber: 1.9 Consensus size: 131
108352307 GATATGAAAG
*
108352317 GAAATTTTGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGC
1 GAAATTTTAAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGC
* * * *
108352382 A-TGATTCCGCGAATTGCTAAATATCGAATCTCGTCTTCGTTTTGAAGAATATTAAAAGACATGA
66 ACT-ATTCCGCGAATTGCTAAAGATCGAATCTCATCTTCATTTTAAAGAATATTAAAAGACATGA
108352446 GT
130 GT
* * *
108352448 GAAATTTTAAAGTGATATTCGATTATTTTGAGCAAACGTAAAATTGCAACCCAACACGTTAGGGC
1 GAAATTTTAAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGC
*
108352513 ACTATTTCGCGAATTGCTAAAGATCGAATCTCATCTTCATTTTAAAGAAT
66 ACTATTCCGCGAATTGCTAAAGATCGAATCTCATCTTCATTTTAAAGAAT
108352563 TCTTAACCGA
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
131 104 0.99
132 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (131 bp):
GAAATTTTAAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGC
ACTATTCCGCGAATTGCTAAAGATCGAATCTCATCTTCATTTTAAAGAATATTAAAAGACATGAG
T
Found at i:108352997 original size:2 final size:2
Alignment explanation
Indices: 108352992--108353024 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
108352982 AAAAAAGGGG
108352992 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108353025 TGAAATGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108356455 original size:26 final size:26
Alignment explanation
Indices: 108356419--108356553 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
108356409 ACATGAATTC
*
108356419 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
108356445 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
108356471 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
108356497 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
108356523 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
108356548 TTATCA
1 TTATCA
108356554 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.21
26 84 0.79
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:108360705 original size:24 final size:26
Alignment explanation
Indices: 108360669--108360717 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
108360659 TCAAACATGC
108360669 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
108360694 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
108360718 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:108362237 original size:26 final size:26
Alignment explanation
Indices: 108362201--108362334 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
108362191 ACATGAATTC
*
108362201 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
108362227 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
108362253 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
108362279 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
108362305 TTATCATG-AACATTTACCTAA-CTA
1 TTATCATGAAACATTTACCTAACCTA
108362329 TTATCA
1 TTATCA
108362335 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
24 9 0.08
25 13 0.12
26 84 0.79
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:108364695 original size:15 final size:16
Alignment explanation
Indices: 108364663--108364700 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
108364653 TTTAAAATTG
*
108364663 ATATAAACTTATTAAA
1 ATATAAAATTATTAAA
108364679 ATATAAAATTA-TAAA
1 ATATAAAATTATTAAA
108364694 ATA-AAAA
1 ATATAAAA
108364701 AATCTAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 7 0.33
16 10 0.48
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
ATATAAAATTATTAAA
Found at i:108372944 original size:19 final size:18
Alignment explanation
Indices: 108372922--108372976 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
108372912 TTGATATCAA
108372922 TTTTAATACTTTTTTATAT
1 TTTTAATA-TTTTTTATAT
* *
108372941 TTTTTATAATTTTTATGAT
1 TTTTAATATTTTTTAT-AT
*
108372960 TTTAAATATTTTTTATA
1 TTTTAATATTTTTTATA
108372977 CAATTTTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 8 0.27
19 22 0.73
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAATATTTTTTATAT
Found at i:108372953 original size:8 final size:9
Alignment explanation
Indices: 108372895--108373100 Score: 99
Period size: 9 Copynumber: 21.4 Consensus size: 9
108372885 AATGGTTTTA
*
108372895 TTTATAAAT
1 TTTATAATT
108372904 TTTATAAGTT
1 TTTATAA-TT
**
108372914 GATATCAATT
1 TTTAT-AATT
* *
108372924 TTAATACTTT
1 TTTATA-ATT
*
108372934 TTTATATTT
1 TTTATAATT
108372943 TTTATAATT
1 TTTATAATT
*
108372952 TTTATGATT
1 TTTATAATT
* *
108372961 TTAAATATTT
1 TT-TATAATT
108372971 TTTATACAATT
1 TTTAT--AATT
* *
108372982 TTAATTATT
1 TTTATAATT
* *
108372991 TTAAATATGTT
1 TT-TATA-ATT
108373002 TTTATTAA-T
1 TTTA-TAATT
108373011 TTTATAATT
1 TTTATAATT
108373020 TATTATAATT
1 T-TTATAATT
*
108373030 ATTATAATT
1 TTTATAATT
*
108373039 ATTATAATAT
1 TTTATAAT-T
*
108373049 TTTAATTATT
1 TTT-ATAATT
108373059 TTTATAAGTT
1 TTTATAA-TT
*
108373069 TATATCAATT
1 TTTAT-AATT
*
108373079 TTCATAATT
1 TTTATAATT
* *
108373088 TTAATATTT
1 TTTATAATT
108373097 TTTA
1 TTTA
108373101 ATAAATAATA
Statistics
Matches: 151, Mismatches: 31, Indels: 30
0.71 0.15 0.14
Matches are distributed among these distances:
8 3 0.02
9 76 0.50
10 51 0.34
11 21 0.14
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (9 bp):
TTTATAATT
Found at i:108372992 original size:30 final size:29
Alignment explanation
Indices: 108372916--108373014 Score: 112
Period size: 30 Copynumber: 3.4 Consensus size: 29
108372906 TATAAGTTGA
**
108372916 TATCAATTTTAA-TACTTTTTTATATTTTT
1 TATCAATTTTAATTA-TTTTAAATATTTTT
* *
108372945 TAT-AATTTTTATGATTTTAAATATTTTT
1 TATCAATTTTAATTATTTTAAATATTTTT
108372973 TATACAATTTTAATTATTTTAAATATGTTTT
1 TAT-CAATTTTAATTATTTTAAATAT-TTTT
*
108373004 TATTAATTTTA
1 TATCAATTTTA
108373015 TAATTTATTA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
28 22 0.37
29 4 0.07
30 26 0.44
31 7 0.12
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (29 bp):
TATCAATTTTAATTATTTTAAATATTTTT
Found at i:108373016 original size:68 final size:64
Alignment explanation
Indices: 108372942--108373102 Score: 162
Period size: 68 Copynumber: 2.4 Consensus size: 64
108372932 TTTTTATATT
* * * *
108372942 TTTTATAATTTTTATGATTTTAAATATTTTTTATACA-ATTTTAATTATTTTAAATATGTTTTTA
1 TTTTATAATTTTTAT-ATTTT--ATAATTATTATA-ATATTTTAATTATTTT-AATAAGTTTATA
*
108373006 TTAA
61 TCAA
*
108373010 TTTTATAATTTATTATAATTATTATAATTATTATAATATTTTAATTATTTTTATAAGTTTATATC
1 TTTTATAATTT-TTAT-ATT-TTATAATTATTATAATATTTTAATTATTTTAATAAGTTTATATC
108373075 AA
63 AA
* *
108373077 TTTTCATAATTTTAATATTTTTTAAT
1 TTTT-ATAATTTTTATATTTTATAAT
108373103 AAATAATAAC
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
65 6 0.08
66 3 0.04
67 20 0.25
68 42 0.52
69 7 0.09
70 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (64 bp):
TTTTATAATTTTTATATTTTATAATTATTATAATATTTTAATTATTTTAATAAGTTTATATCAA
Found at i:108373101 original size:48 final size:46
Alignment explanation
Indices: 108372971--108373102 Score: 128
Period size: 48 Copynumber: 2.8 Consensus size: 46
108372961 TTAAATATTT
*
108372971 TTTATA-CAATTTTAATTATTTTAAATATGTTTTT-ATTAATTTTATAA
1 TTTATATCAATTTT-ATAATTTT-AATAT-TTTTTAATTAATTTTATAA
* *
108373018 TTTATTAT-AATTATTATAATTATT-ATAATATTTTAATTATTTTTATAA
1 TTTA-TATCAATT-TTATAATT-TTAAT-ATTTTTTAATTAATTTTATAA
108373066 GTTTATATCAATTTTCATAATTTTAATATTTTTTAAT
1 -TTTATATCAATTTT-ATAATTTTAATATTTTTTAAT
108373103 AAATAATAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
47 10 0.14
48 41 0.58
49 20 0.28
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (46 bp):
TTTATATCAATTTTATAATTTTAATATTTTTTAATTAATTTTATAA
Found at i:108375616 original size:24 final size:24
Alignment explanation
Indices: 108375589--108375743 Score: 156
Period size: 24 Copynumber: 6.4 Consensus size: 24
108375579 GAAATGACCT
108375589 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
108375613 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGAA
*
108375637 TAGCACTATGTGTGCGGATTT-ATA
1 TGGCACTATGTGTGCGGATTTGA-A
*
108375661 CGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* ** *
108375685 TCGTCGA-TATGTGTATGGATTATTAA
1 T-GGC-ACTATGTGTGCGGATT-TGAA
* *
108375711 -GGCACTATGTGTGCGG-GTTAACA
1 TGGCACTATGTGTGCGGATTTGA-A
108375734 TGGCACTATG
1 TGGCACTATG
108375744 GGTGTAAATT
Statistics
Matches: 108, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
22 2 0.02
23 3 0.03
24 84 0.78
25 15 0.14
26 4 0.04
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:108381047 original size:18 final size:18
Alignment explanation
Indices: 108380984--108381037 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
108380974 ATGAAAAAAC
108380984 AATGATATTTGAAAT-AT
1 AATGATATTTGAAATAAT
** *
108381001 TTTACATATTTGAAATAAT
1 AAT-GATATTTGAAATAAT
108381020 AATGATATTTGAAATAAT
1 AATGATATTTGAAATAAT
108381038 TATTTGATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 1 0.03
18 25 0.86
19 3 0.10
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.43
Consensus pattern (18 bp):
AATGATATTTGAAATAAT
Found at i:108381951 original size:15 final size:14
Alignment explanation
Indices: 108381917--108381985 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 14
108381907 CTATTAAGAC
108381917 ATTTTATAT-TTTT
1 ATTTTATATATTTT
108381930 AAGTTTTATCATATTTT
1 -A-TTTTAT-ATATTTT
108381947 ATTTTATA-A-TTT
1 ATTTTATATATTTT
108381959 ATTATTATTATTATTATT
1 ATT-TTA-TA-TATT-TT
108381977 ATTTTATAT
1 ATTTTATAT
108381986 TTAGGGAGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 17
0.73 0.00 0.27
Matches are distributed among these distances:
12 6 0.13
13 4 0.09
14 4 0.09
15 13 0.28
16 6 0.13
17 8 0.17
18 5 0.11
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (14 bp):
ATTTTATATATTTT
Found at i:108385969 original size:12 final size:12
Alignment explanation
Indices: 108385952--108385976 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108385942 AAGAATAATC
108385952 GAGAATTCAATT
1 GAGAATTCAATT
108385964 GAGAATTCAATT
1 GAGAATTCAATT
108385976 G
1 G
108385977 GGCACCCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (12 bp):
GAGAATTCAATT
Done.