Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 364 of 410
Found at i:111826653 original size:7 final size:7
Alignment explanation
Indices: 111826641--111826697 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
111826631 CATATTAACT
111826641 CATAAAC
1 CATAAAC
111826648 CATAAACC
1 CATAAA-C
*
111826656 CCTAAAC
1 CATAAAC
111826663 CATAAAC
1 CATAAAC
*
111826670 CCTAAAC
1 CATAAAC
*
111826677 CTATAATC
1 C-ATAAAC
111826685 CATAAAC
1 CATAAAC
*
111826692 CTTAAA
1 CATAAA
111826698 ATATTAACTC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
7 30 0.73
8 11 0.27
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (7 bp):
CATAAAC
Found at i:111826663 original size:15 final size:14
Alignment explanation
Indices: 111826643--111826697 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
111826633 TATTAACTCA
111826643 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
111826658 TAAACCATAAACCC
1 TAAACCATAAACCC
* *
111826672 TAAACCTATAATCCA
1 TAAACC-ATAAACCC
*
111826687 TAAACCTTAAA
1 TAAACCATAAA
111826698 ATATTAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.34
15 23 0.66
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:111826913 original size:30 final size:31
Alignment explanation
Indices: 111826879--111826945 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 31
111826869 TTTAAAATTA
*
111826879 TTTTAAATGATAGTA-TTTTA-AT-TTTTTCAT
1 TTTTAAATCATA-TATTTTTATATGTTTTT-AT
111826909 TTTT--ATCATATATTTTTATATGTTTTTAT
1 TTTTAAATCATATATTTTTATATGTTTTTAT
111826938 TTTTAAAT
1 TTTTAAAT
111826946 TTTTTCTACG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
27 2 0.06
28 10 0.32
29 8 0.26
30 9 0.29
31 2 0.06
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.64
Consensus pattern (31 bp):
TTTTAAATCATATATTTTTATATGTTTTTAT
Found at i:111827244 original size:40 final size:40
Alignment explanation
Indices: 111827195--111827273 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
111827185 GAGAATTAGC
* *
111827195 GGCGCTTTTTGAAAAA-TACCGCTAATGTTCGATCTATAGT
1 GGCGCTTTTT-AAAAAGCACCGCTAATGCTCGATCTATAGT
*
111827235 GGCGTTTTTTAAAAAGCACCGCTAATGCTCGATCTATAG
1 GGCGCTTTTTAAAAAGCACCGCTAATGCTCGATCTATAG
111827274 CGATGCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 5 0.14
40 30 0.86
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (40 bp):
GGCGCTTTTTAAAAAGCACCGCTAATGCTCGATCTATAGT
Found at i:111829722 original size:3 final size:3
Alignment explanation
Indices: 111829714--111829753 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
111829704 AGCAAACACA
111829714 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT G
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT G
111829754 TAAAACTCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.33
Consensus pattern (3 bp):
GGT
Found at i:111833182 original size:18 final size:18
Alignment explanation
Indices: 111833146--111833185 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
111833136 AAGTAATTTC
*
111833146 AAAATATAAATAAATATA
1 AAAATATAAATAAAAATA
111833164 AAAATA-AAATAAAAAATA
1 AAAATATAAAT-AAAAATA
111833182 AAAA
1 AAAA
111833186 CAAATAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAATATAAATAAAAATA
Found at i:111834012 original size:46 final size:45
Alignment explanation
Indices: 111833952--111834217 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
111833942 TTTGACATGA
* * * * * *
111833952 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
111833998 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
111834044 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
111834090 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
111834136 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
111834174 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
111834218 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:111834181 original size:38 final size:38
Alignment explanation
Indices: 111834130--111834205 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
111834120 ACATTTTATA
111834130 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
111834168 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
111834206 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:111836301 original size:11 final size:11
Alignment explanation
Indices: 111836285--111836336 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
111836275 TATACTAAAT
111836285 AAATAATAATA
1 AAATAATAATA
*
111836296 AAATAAT-ATT
1 AAATAATAATA
* *
111836306 AAATATCTTATA
1 AAATA-ATAATA
*
111836318 AAATATTAATA
1 AAATAATAATA
111836329 AAATAATA
1 AAATAATA
111836337 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
AAATAATAATA
Found at i:111838777 original size:14 final size:14
Alignment explanation
Indices: 111838755--111838814 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 14
111838745 ACTCATAACT
111838755 TATATTA-TATACA
1 TATATTATTATACA
111838768 TATAATTA-TATACA
1 TAT-ATTATTATACA
*
111838782 TTTTATTATTATAACA
1 -TATATTATTAT-ACA
111838798 TATATATATTATACA
1 TATAT-TATTATACA
111838813 TA
1 TA
111838815 ATAAATAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
13 3 0.08
14 14 0.35
15 14 0.35
16 9 0.22
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
TATATTATTATACA
Found at i:111841518 original size:13 final size:14
Alignment explanation
Indices: 111841497--111841525 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
111841487 TGAAAAATGG
111841497 ATTAGAAAATATTT
1 ATTAGAAAATATTT
111841511 ATTA-AAAATATTT
1 ATTAGAAAATATTT
111841524 AT
1 AT
111841526 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:111842138 original size:24 final size:23
Alignment explanation
Indices: 111842094--111842138 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
111842084 GAAAAGAAAA
*
111842094 ACAAGTGTATAAAAATGTTTGGT
1 ACAAGTGTATAAAAATATTTGGT
111842117 ACAAGTGT-TAAATAAATATTTG
1 ACAAGTGTAT-AA-AAATATTTG
111842139 TTATTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 1 0.05
23 10 0.53
24 8 0.42
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (23 bp):
ACAAGTGTATAAAAATATTTGGT
Found at i:111842811 original size:51 final size:51
Alignment explanation
Indices: 111842714--111842815 Score: 125
Period size: 51 Copynumber: 2.0 Consensus size: 51
111842704 AGAACTAAGT
* * * * * *
111842714 TATCCGGATGAAATATGAAGCTCTTGTTGAAACTAGAGCAATAAAGTAATA
1 TATCCGAATGAAATATAAAGCTCTTGATGAAACCAGAACAACAAAGTAATA
*
111842765 TATCCGAATGAAATATAAAGTTCTTGAT-AAAGCCAGAACAACAAAGTAATA
1 TATCCGAATGAAATATAAAGCTCTTGATGAAA-CCAGAACAACAAAGTAATA
111842816 ATTCCGGATA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 3 0.07
51 40 0.93
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (51 bp):
TATCCGAATGAAATATAAAGCTCTTGATGAAACCAGAACAACAAAGTAATA
Found at i:111843176 original size:15 final size:15
Alignment explanation
Indices: 111843153--111843200 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
111843143 TATCAAACTT
111843153 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
111843168 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
111843183 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
111843197 ATAT
1 ATAT
111843201 ATTATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:111843857 original size:18 final size:19
Alignment explanation
Indices: 111843836--111843876 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
111843826 AATGAAATGA
111843836 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
111843854 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
111843873 GAAA
1 GAAA
111843877 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:111852565 original size:136 final size:135
Alignment explanation
Indices: 111852381--111852647 Score: 414
Period size: 136 Copynumber: 2.0 Consensus size: 135
111852371 GCAAACAAAT
*
111852381 GTTACTAGCCAAGAATTTAATTGTTTGACGAAGCTTATTCAAGGATCATACAAATTGATCTTATA
1 GTTACTAGCAAAGAATTTAATTGTTTGACGAAGCTTATTCAAGGATCATACAAATTGATCTTATA
* * * *
111852446 TTTCAAGCA-ACTAAACAAAATAAACAAATAATATATTTTTTTCCTTTTACGGGAAAAATTCCAA
66 TTTCAAG-AGACTAAACAAAATAAAC-AATAATATA-GTTTTTCCTTTTACAGAAAAAACTCCAA
111852510 TTCCTTAC
128 TTCCTTAC
**
111852518 GTTACTAGCAAAGAA-TTAATTGTTTGAC-AATGCTTATTCAAGGATCATATGAATTGATCTTAT
1 GTTACTAGCAAAGAATTTAATTGTTTGACGAA-GCTTATTCAAGGATCATACAAATTGATCTTAT
111852581 ATTTCAAGAGACTAAACAAAATAAACAATAATATAGTTTTTCCTTTTACAGAAAAAACTCCAATT
65 ATTTCAAGAGACTAAACAAAATAAACAATAATATAGTTTTTCCTTTTACAGAAAAAACTCCAATT
111852646 CC
130 CC
111852648 GTGATTGAAT
Statistics
Matches: 121, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
134 28 0.23
135 12 0.10
136 67 0.55
137 14 0.12
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.34
Consensus pattern (135 bp):
GTTACTAGCAAAGAATTTAATTGTTTGACGAAGCTTATTCAAGGATCATACAAATTGATCTTATA
TTTCAAGAGACTAAACAAAATAAACAATAATATAGTTTTTCCTTTTACAGAAAAAACTCCAATTC
CTTAC
Found at i:111854619 original size:9 final size:9
Alignment explanation
Indices: 111854598--111854639 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
111854588 AATTTTAAAA
111854598 ATTAAACAT
1 ATTAAACAT
111854607 -TTAAACAT
1 ATTAAACAT
*
111854615 ATTAAAAAT
1 ATTAAACAT
111854624 ATTTAAACAT
1 A-TTAAACAT
*
111854634 TTTAAA
1 ATTAAA
111854640 ATTTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 8 0.29
9 13 0.46
10 7 0.25
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (9 bp):
ATTAAACAT
Found at i:111854646 original size:27 final size:24
Alignment explanation
Indices: 111854588--111854652 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 24
111854578 GTATATATAT
111854588 AATTTT-AAAAATTAAACATTTAA
1 AATTTTAAAAAATTAAACATTTAA
*
111854611 ACATATTAAAAATATTTAAACATTTTAA
1 A-ATTTTAAAAA-A-TTAAACA-TTTAA
111854639 AATTTTAATAAAAT
1 AATTTTAA-AAAAT
111854653 ATATATTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
23 1 0.03
24 4 0.12
25 4 0.12
26 2 0.06
27 14 0.41
28 9 0.26
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (24 bp):
AATTTTAAAAAATTAAACATTTAA
Found at i:111854898 original size:29 final size:29
Alignment explanation
Indices: 111854865--111854923 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
111854855 GACTAGAGTT
111854865 AGACTGGTAATCGTATTGATTAGGTATTG
1 AGACTGGTAATCGTATTGATTAGGTATTG
111854894 AGACTGGTAATCGTATTGATTAGGTATTG
1 AGACTGGTAATCGTATTGATTAGGTATTG
111854923 A
1 A
111854924 TCAAGGCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.37
Consensus pattern (29 bp):
AGACTGGTAATCGTATTGATTAGGTATTG
Found at i:111857046 original size:22 final size:23
Alignment explanation
Indices: 111857021--111857064 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
111857011 ATATTTGAAA
*
111857021 TTTTATATATAAATAT-ATAAAT
1 TTTTAAATATAAATATGATAAAT
*
111857043 TTTTAAATATAATTATGATAAA
1 TTTTAAATATAAATATGATAAA
111857065 ATATATAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTTAAATATAAATATGATAAAT
Found at i:111865159 original size:14 final size:14
Alignment explanation
Indices: 111865140--111865166 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
111865130 TTGGATTTAG
111865140 TTCTTATGTTAAAA
1 TTCTTATGTTAAAA
111865154 TTCTTATGTTAAA
1 TTCTTATGTTAAA
111865167 TTTATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCTTATGTTAAAA
Found at i:111865208 original size:14 final size:14
Alignment explanation
Indices: 111865186--111865215 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
111865176 ATGACATTCT
*
111865186 AAAATTAAAAACAA
1 AAAAATAAAAACAA
111865200 AAAAATAAAAACAA
1 AAAAATAAAAACAA
111865214 AA
1 AA
111865216 TCCTCACTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAATAAAAACAA
Found at i:111883680 original size:37 final size:38
Alignment explanation
Indices: 111883576--111883681 Score: 99
Period size: 37 Copynumber: 2.8 Consensus size: 38
111883566 ACACACTAGT
* * *
111883576 TTGGCACCCAGTGCCTTATCGAATAATTTGAAGTAATAAA
1 TTGGCACCCAGTGCCTTCTCGAATAAATCGAAG--ATAAA
* * * *
111883616 TTGTCACCCAATG-TTTCATCGATTAAATCGAAG-TAAA
1 TTGGCACCCAGTGCCTTC-TCGAATAAATCGAAGATAAA
*
111883653 TTGGCACCCAGTGCCTGCTCGAATAAATC
1 TTGGCACCCAGTGCCTTCTCGAATAAATC
111883682 CAAAGTGATA
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
37 25 0.48
38 2 0.04
39 2 0.04
40 23 0.44
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (38 bp):
TTGGCACCCAGTGCCTTCTCGAATAAATCGAAGATAAA
Found at i:111884627 original size:10 final size:10
Alignment explanation
Indices: 111884607--111884677 Score: 72
Period size: 10 Copynumber: 6.7 Consensus size: 10
111884597 CTCCCTTTTC
111884607 TTTCTTT-TT
1 TTTCTTTCTT
111884616 TTTCTTTCTT
1 TTTCTTTCTT
111884626 TTTCTTTCTGT
1 TTTCTTTCT-T
* *
111884637 TTTGTTTTGGTT
1 TTT-CTTT-CTT
111884649 TTTCTATTCCTT
1 TTTCT-TT-CTT
111884661 TTTCTTTCTT
1 TTTCTTTCTT
111884671 TTTCTTT
1 TTTCTTT
111884678 TATTTATTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
9 7 0.13
10 21 0.40
11 7 0.13
12 16 0.31
13 1 0.02
ACGTcount: A:0.01, C:0.15, G:0.06, T:0.77
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:111884628 original size:23 final size:23
Alignment explanation
Indices: 111884602--111884677 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
111884592 TCTTTCTCCC
111884602 TTTTCTTTCTTTTTTTTCTTTCT
1 TTTTCTTTCTTTTTTTTCTTTCT
* **
111884625 TTTTCTTTCTGTTTTGTT-TTGGT
1 TTTTCTTTCT-TTTTTTTCTTTCT
*
111884648 TTTTCTATTC--CTTTTTCTTTCT
1 TTTTCT-TTCTTTTTTTTCTTTCT
111884670 TTTTCTTT
1 TTTTCTTT
111884678 TATTTATTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 6 0.14
22 9 0.21
23 19 0.44
24 9 0.21
ACGTcount: A:0.01, C:0.16, G:0.05, T:0.78
Consensus pattern (23 bp):
TTTTCTTTCTTTTTTTTCTTTCT
Found at i:111889216 original size:2 final size:2
Alignment explanation
Indices: 111889204--111889237 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
111889194 CTTTTTACTT
*
111889204 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
111889238 CGTTTCAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:111889554 original size:10 final size:9
Alignment explanation
Indices: 111889529--111889762 Score: 67
Period size: 10 Copynumber: 24.9 Consensus size: 9
111889519 CATTACAAAT
*
111889529 TTATATAAAC
1 TTATA-AAAA
111889539 TTATAAAAA
1 TTATAAAAA
111889548 TTCATAAAAA
1 TT-ATAAAAA
111889558 CTTATAAAAAAA
1 -TTAT--AAAAA
*
111889570 TTCTAATAAA
1 TTATAA-AAA
111889580 TTATAAAAA
1 TTATAAAAA
*
111889589 -GATAAAAA
1 TTATAAAAA
111889597 -TA-AAACATA
1 TTATAAA-A-A
*
111889606 TT-T-GAAA
1 TTATAAAAA
* *
111889613 TT-TGAAAT
1 TTATAAAAA
*
111889621 TTCTATAAAA
1 TTATA-AAAA
111889631 TTATAAAAA
1 TTATAAAAA
111889640 TTTATAATAAAA
1 -TTAT-A-AAAA
* *
111889652 TTCATACAAC
1 TT-ATAAAAA
* *
111889662 TTTTAAATA
1 TTATAAAAA
111889671 TTATAATAAA
1 TTATAA-AAA
111889681 TTAT-AAAA
1 TTATAAAAA
*
111889689 -TATCAATAA
1 TTAT-AAAAA
**
111889698 TTATAAACC
1 TTATAAAAA
111889707 TTAT-AAAA
1 TTATAAAAA
111889715 TTCA-AAACAA
1 TT-ATAAA-AA
*
111889725 GTTCTAATAAA
1 -TTATAA-AAA
111889736 TTATAAAATA
1 TTATAAAA-A
111889746 TTATAAAATA
1 TTATAAAA-A
111889756 TTA-AAAA
1 TTATAAAA
111889763 TATATAATGA
Statistics
Matches: 170, Mismatches: 27, Indels: 55
0.67 0.11 0.22
Matches are distributed among these distances:
7 10 0.06
8 21 0.12
9 44 0.26
10 68 0.40
11 15 0.09
12 12 0.07
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:111889764 original size:9 final size:10
Alignment explanation
Indices: 111889735--111889769 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
111889725 GTTCTAATAA
111889735 ATTATAAAAT
1 ATTATAAAAT
111889745 ATTATAAAAT
1 ATTATAAAAT
111889755 ATTA-AAAAT
1 ATTATAAAAT
111889764 A-TATAA
1 ATTATAA
111889770 TGATCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 2 0.08
9 8 0.33
10 14 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTATAAAAT
Found at i:111890229 original size:30 final size:30
Alignment explanation
Indices: 111890176--111890259 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 30
111890166 ATTTATTACG
* ** *
111890176 ATTTTATGATTTAAATGACTTTTTTTAAAA
1 ATTTTATAATTTATTTGAATTTTTTTAAAA
* *
111890206 ATTTTATAATTTATTTGAA-TTTTTTATAT
1 ATTTTATAATTTATTTGAATTTTTTTAAAA
* *
111890235 TTTTTATAAGTTATTATGAATTTTT
1 ATTTTATAATTTATT-TGAATTTTT
111890260 ATAAGTTATT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
29 21 0.48
30 19 0.43
31 4 0.09
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.61
Consensus pattern (30 bp):
ATTTTATAATTTATTTGAATTTTTTTAAAA
Found at i:111890854 original size:7 final size:8
Alignment explanation
Indices: 111890840--111890870 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
111890830 ACAGCCTAAA
111890840 ATTTTTTT
1 ATTTTTTT
111890848 ATTTTTTT
1 ATTTTTTT
111890856 ATTTTTTTT
1 A-TTTTTTT
111890865 ATTTTT
1 ATTTTT
111890871 GTCAAGGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
ATTTTTTT
Found at i:111890855 original size:9 final size:9
Alignment explanation
Indices: 111890841--111890870 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
111890831 CAGCCTAAAA
111890841 TTTTTTTA-
1 TTTTTTTAT
111890849 TTTTTTTAT
1 TTTTTTTAT
111890858 TTTTTTTAT
1 TTTTTTTAT
111890867 TTTT
1 TTTT
111890871 GTCAAGGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:111896388 original size:24 final size:24
Alignment explanation
Indices: 111896356--111896409 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
111896346 TTTTAGCGAA
111896356 AAATTTGGAGTTAAAGAGTTGACT
1 AAATTTGGAGTTAAAGAGTTGACT
111896380 AAATTTGGAGTTAAAGAGTTGACT
1 AAATTTGGAGTTAAAGAGTTGACT
111896404 AAATTT
1 AAATTT
111896410 ACAAAACAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (24 bp):
AAATTTGGAGTTAAAGAGTTGACT
Found at i:111896666 original size:28 final size:28
Alignment explanation
Indices: 111896635--111896689 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
111896625 AAATTAAAAA
111896635 AAATTATGA-TAAAAACAAAATTCAAACT
1 AAATTATGAGTAAAAA-AAAATTCAAACT
* * *
111896663 AAATTTTGAGTAAAGAAAAATTTAAAC
1 AAATTATGAGTAAAAAAAAATTCAAAC
111896690 ATATAAATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.27
Consensus pattern (28 bp):
AAATTATGAGTAAAAAAAAATTCAAACT
Found at i:111904791 original size:172 final size:172
Alignment explanation
Indices: 111904499--111904832 Score: 533
Period size: 172 Copynumber: 1.9 Consensus size: 172
111904489 CAAAGCACCC
* * * * *
111904499 AAGAATTTAGGCAAATATACACACAAATTCCTAGATGTACAAAGCATTAGCAAGATACTCCAACA
1 AAGAAATTAGGCAAATATAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAGATACTCCAAAA
* * * *
111904564 TATTATAGTAAAGACTAGCGAGACATCAGACTAAAGAAGAAATTTGATAAGGTTAAAAGAAACAA
66 TATTATAGTAAAGACTAGAGAGACATCAGACCAAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
111904629 TTGAAGGGATAAAAATATAGAAGAATCAAAAATATACTAGAA
131 TTGAAGGGATAAAAATATAGAAGAATCAAAAATATACTAGAA
* *
111904671 AAGAAATTAGGCAAATGTAAACACAAATCCCTAGAAGTACAAAGCATTAGGAAGATACTCCAAAA
1 AAGAAATTAGGCAAATATAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAGATACTCCAAAA
* * * *
111904736 TATTATAGTAGAGACTAGATAGACATCAGACCGAAGAAGAAACTTGACAAGGTTAAACGAAACAA
66 TATTATAGTAAAGACTAGAGAGACATCAGACCAAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
111904801 TTGAAGGGATAAAAATATAGAAGAATCAAAAA
131 TTGAAGGGATAAAAATATAGAAGAATCAAAAA
111904833 CCACAATTTA
Statistics
Matches: 147, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
172 147 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.20
Consensus pattern (172 bp):
AAGAAATTAGGCAAATATAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAGATACTCCAAAA
TATTATAGTAAAGACTAGAGAGACATCAGACCAAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
TTGAAGGGATAAAAATATAGAAGAATCAAAAATATACTAGAA
Found at i:111908409 original size:11 final size:11
Alignment explanation
Indices: 111908395--111908434 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
111908385 ATTTTCTCCT
111908395 TATTTTGCTAC
1 TATTTTGCTAC
* *
111908406 TATTTTACTAT
1 TATTTTGCTAC
*
111908417 TATGTTGCTAC
1 TATTTTGCTAC
111908428 TATTTTG
1 TATTTTG
111908435 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:111908505 original size:30 final size:30
Alignment explanation
Indices: 111908471--111908533 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
111908461 ATTTATTTTA
111908471 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
111908501 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
111908531 TTG
1 TTG
111908534 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:111909823 original size:23 final size:23
Alignment explanation
Indices: 111909779--111909823 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
111909769 AATTTGAAAT
111909779 AATTTTATTTTTAATTAAAATAAA
1 AATTTTATTTTT-ATTAAAATAAA
111909803 AATTTTAATTTTT-TTAAAATA
1 AATTTT-ATTTTTATTAAAATA
111909824 TTTAATCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 8 0.40
24 6 0.30
25 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AATTTTATTTTTATTAAAATAAA
Found at i:111915233 original size:41 final size:40
Alignment explanation
Indices: 111915179--111915264 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
111915169 TATAATCATT
*
111915179 TTTTATTATATTTTCAATTTGTGTATTGCTTTAAGAATTG
1 TTTTAGTATATTTTCAATTTGTGTATTGCTTTAAGAATTG
** * * * *
111915219 TTTTAGTATCATTTTTTATTTGTTTATTGTTTTAATATTTG
1 TTTTAGTAT-ATTTTCAATTTGTGTATTGCTTTAAGAATTG
111915260 TTTTA
1 TTTTA
111915265 AATGTATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.22, C:0.03, G:0.10, T:0.64
Consensus pattern (40 bp):
TTTTAGTATATTTTCAATTTGTGTATTGCTTTAAGAATTG
Found at i:111917799 original size:2 final size:2
Alignment explanation
Indices: 111917792--111917822 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
111917782 ACATGCGTAA
111917792 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
111917823 ATCATATTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:111918018 original size:228 final size:228
Alignment explanation
Indices: 111917614--111918032 Score: 786
Period size: 228 Copynumber: 1.8 Consensus size: 228
111917604 TTAATTTTAA
*
111917614 TAATACGTACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
1 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
*
111917679 TAAAATTATAAAACAATATGTTATTTGGAAAATAACAATTATTGTAATGAGATACATGTTTTACT
66 TAAAATTATAAAACAATATGTTATTTGAAAAATAACAATTATTGTAATGAGATACATGTTTTACT
111917744 AGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAATATATATATATATATA
131 AGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAATATATATATATATATA
111917809 TATATATATATATAATCATATTACTGAATCTAC
196 TATATATATATATAATCATATTACTGAATCTAC
111917842 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
1 TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
* *
111917907 TAAAATTATAAAACAATATGTTATTTGAAAAATAACTATTATTGTAATGAGATACATGTTTTATT
66 TAAAATTATAAAACAATATGTTATTTGAAAAATAACAATTATTGTAATGAGATACATGTTTTACT
111917972 AGGTATAAGTATTTAAAATTTTGTTTTTGTT-ATGTGATACATGCGTAAATATATATATATA
131 AGGTATAAGTATTTAAAATTTTGTTTTT-TTAATGTGATACATGCGTAAATATATATATATA
111918033 ATCATATTAG
Statistics
Matches: 186, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
228 184 0.99
229 2 0.01
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (228 bp):
TAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAA
TAAAATTATAAAACAATATGTTATTTGAAAAATAACAATTATTGTAATGAGATACATGTTTTACT
AGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAATATATATATATATATA
TATATATATATATAATCATATTACTGAATCTAC
Found at i:111923748 original size:138 final size:138
Alignment explanation
Indices: 111923496--111923864 Score: 495
Period size: 138 Copynumber: 2.6 Consensus size: 138
111923486 GTGTGCTCTC
*** * * * * * * *
111923496 TGATATGAAATTTGTAAGACCATAGTTGAAAGATACCATGACAACTTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
**
111923561 CCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAAACCATGATTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGAATAAAACCATGATTGAAAGATACCA
111923626 TGGCAACG
131 TGGCAACG
* *
111923634 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAAAAGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
* * *
111923699 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGAATAAAACCATGATTGAAAGATACCA
111923764 TGGCAACG
131 TGGCAACG
* * *
111923772 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATGAGT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-TAAA--AA-GAGT
* * *
111923837 AAGACCATAGTTGAAAGACACTATGGCA
62 AAGACCATGGTTGAAAGATACCATGGCA
111923865 TCATGTCAAA
Statistics
Matches: 203, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
138 170 0.84
139 3 0.01
141 2 0.01
142 28 0.14
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (138 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
CCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGAATAAAACCATGATTGAAAGATACCA
TGGCAACG
Found at i:111923822 original size:46 final size:46
Alignment explanation
Indices: 111923496--111923816 Score: 462
Period size: 46 Copynumber: 7.0 Consensus size: 46
111923486 GTGTGCTCTC
*** * * *
111923496 TGATATGAAATTTGTAAGACCATAGTTGAAAGATACCATGACAACT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
** *
111923542 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* ** * *
111923588 TAATATGAAATGTGTAAAACCATGATTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
111923634 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* * * *
111923680 TGACATAAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
111923726 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
111923772 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
111923817 ATGACAGAAA
Statistics
Matches: 252, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 252 1.00
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:111923829 original size:92 final size:92
Alignment explanation
Indices: 111923510--111923864 Score: 478
Period size: 92 Copynumber: 3.8 Consensus size: 92
111923500 ATGAAATTTG
* * * **
111923510 TAAGACCATAGTTGAAAGATACCATGACAACTTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
* * * * **
111923575 TACCATGGCAACCTAATATGAAATGTG
66 TACCATGGCAACGTGACATGAAAAGAA
* * *
111923602 TAAAACCATGATTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
*
111923667 TACCATGGCAACGTGACATAAAAAGAA
66 TACCATGGCAACGTGACATGAAAAGAA
*
111923694 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
111923759 TACCATGGCAACGTGACATGAAAAGAA
66 TACCATGGCAACGTGACATGAAAAGAA
* *
111923786 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGAGTAAGACCATAGTTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATG-A--A-TAAGACCATGGTTG
* *
111923850 AAAGACACTATGGCA
61 AAAGATACCATGGCA
111923865 TCATGTCAAA
Statistics
Matches: 235, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
91 1 0.00
92 206 0.88
93 1 0.00
95 1 0.00
96 26 0.11
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACGTGACATGAAAAGAA
Found at i:111930132 original size:13 final size:15
Alignment explanation
Indices: 111930102--111930133 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
111930092 TCATTTCATG
111930102 CATTTCATCAATAAT
1 CATTTCATCAATAAT
111930117 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
111930130 CATT
1 CATT
111930134 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:111930364 original size:12 final size:13
Alignment explanation
Indices: 111930346--111930377 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
111930336 TCGATATCTC
111930346 AATTTCAATTCAT
1 AATTTCAATTCAT
111930359 -ATTTCAATTCAT
1 AATTTCAATTCAT
111930371 AATTTCA
1 AATTTCA
111930378 CTTTCTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTTCAATTCAT
Found at i:111930790 original size:21 final size:21
Alignment explanation
Indices: 111930726--111930790 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
111930716 CAGGAGCAGT
*
111930726 ATACGACACATAAAGTGCTTG
1 ATACGACACATAAAGTGCCTG
* * *
111930747 AAACGACACACAAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
111930768 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
111930789 AT
1 AT
111930791 TGGCAAAGCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.18
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:111932000 original size:15 final size:15
Alignment explanation
Indices: 111931976--111932014 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
111931966 CTCAATTTTC
* *
111931976 CCTTTATCTTTCTTT
1 CCTTTTTCTTTCCTT
111931991 CCTTTTTCTTTCCTT
1 CCTTTTTCTTTCCTT
111932006 CCTATTTTC
1 CCT-TTTTC
111932015 GTTTGCTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (15 bp):
CCTTTTTCTTTCCTT
Found at i:111932220 original size:3 final size:3
Alignment explanation
Indices: 111932212--111932247 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
111932202 TCTTTAATTT
111932212 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
111932248 CCAATGTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:111932566 original size:20 final size:18
Alignment explanation
Indices: 111932541--111932577 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
111932531 ACTATTTGAT
111932541 TTATTTCATAATATAATATC
1 TTATTT-ATAAT-TAATATC
111932561 TTATTTATAATTAATAT
1 TTATTTATAATTAATAT
111932578 AAATACAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTTATAATTAATATC
Found at i:111932612 original size:20 final size:20
Alignment explanation
Indices: 111932565--111932624 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 20
111932555 AATATCTTAT
111932565 TTATAATTAATATAA-ATACAATA
1 TTATAATTAA-ATAATATAC---A
111932588 TTATAA-TATAATAATATACA
1 TTATAATTA-AATAATATACA
111932608 TTATAATTAAATAATAT
1 TTATAATTAAATAATAT
111932625 TTAATTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
20 15 0.44
21 2 0.06
22 6 0.18
23 11 0.32
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TTATAATTAAATAATATACA
Found at i:111932621 original size:23 final size:22
Alignment explanation
Indices: 111932565--111932623 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
111932555 AATATCTTAT
111932565 TTATAATT-AAT-ATAAATACA
1 TTATAATTAAATAATAAATACA
* *
111932585 ATATTA-TAATATAATAATATACA
1 TTATAATTAA-ATAATAA-ATACA
111932608 TTATAATTAAATAATA
1 TTATAATTAAATAATA
111932624 TTTAATTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
19 1 0.03
20 5 0.17
21 2 0.07
22 4 0.13
23 15 0.50
24 3 0.10
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (22 bp):
TTATAATTAAATAATAAATACA
Found at i:111933880 original size:13 final size:13
Alignment explanation
Indices: 111933862--111933889 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
111933852 GTATGTTAGT
111933862 TTATATTTGAAGA
1 TTATATTTGAAGA
111933875 TTATATTTGAAGA
1 TTATATTTGAAGA
111933888 TT
1 TT
111933890 GATCGTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
TTATATTTGAAGA
Found at i:111934387 original size:7 final size:7
Alignment explanation
Indices: 111934375--111934412 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
111934365 AATTACATCT
111934375 ACTGTTC
1 ACTGTTC
111934382 ACTGTTC
1 ACTGTTC
111934389 ACTGTTC
1 ACTGTTC
111934396 ACTGTTC
1 ACTGTTC
111934403 ACTGTTC
1 ACTGTTC
111934410 ACT
1 ACT
111934413 TTGTTGTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (7 bp):
ACTGTTC
Found at i:111935104 original size:23 final size:24
Alignment explanation
Indices: 111935050--111935114 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 24
111935040 TATAACATTT
*
111935050 TATATAAAAATAAAT-T-TAAAAAA
1 TATAT-AAAATAAATATATTAAAAA
*
111935073 TATAATAAATTAAATATATTAAAAA
1 TAT-ATAAAATAAATATATTAAAAA
111935098 TAT-TAAAATAAATATAT
1 TATATAAAATAAATATAT
111935115 ACTAAAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 24 0.67
24 3 0.08
25 9 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
TATATAAAATAAATATATTAAAAA
Found at i:111935114 original size:25 final size:25
Alignment explanation
Indices: 111935068--111935121 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
111935058 AATAAATTTA
* *
111935068 AAAAATATAATAAATTAAATATATT
1 AAAAATATAATAAATAAAATATACT
*
111935093 AAAAATATTA-AAATAAATATATACT
1 AAAAATATAATAAATAAA-ATATACT
111935118 AAAA
1 AAAA
111935122 TAATTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAATATAATAAATAAAATATACT
Found at i:111935122 original size:16 final size:16
Alignment explanation
Indices: 111935101--111935131 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
111935091 TTAAAAATAT
111935101 TAAAATAAATATATAC
1 TAAAATAAATATATAC
*
111935117 TAAAATAATTATATA
1 TAAAATAAATATATA
111935132 ATATCTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAATAAATATATAC
Found at i:111944234 original size:6 final size:6
Alignment explanation
Indices: 111944223--111944250 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
111944213 TATATTTCTG
111944223 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
111944251 TGAATTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:111946400 original size:2 final size:2
Alignment explanation
Indices: 111946395--111946420 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
111946385 CCAGGAGAGA
111946395 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
111946421 TTGAAGCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111953576 original size:21 final size:23
Alignment explanation
Indices: 111953529--111953582 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
111953519 CATTCAAGAT
**
111953529 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
111953552 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
111953573 AAAAT-ATATA
1 AAAATAATATA
111953583 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:111953812 original size:21 final size:24
Alignment explanation
Indices: 111953760--111953874 Score: 92
Period size: 21 Copynumber: 5.2 Consensus size: 24
111953750 ATAAGAAAAA
*
111953760 AGTAAT-AAT-GAAA-ATAATATT
1 AGTAATAAATAGAAATATAATAAT
111953781 AGTATATAAATAGAAATA-AA-AAT
1 AGTA-ATAAATAGAAATATAATAAT
111953804 A-TAATAAATAGAAATATAATAAT
1 AGTAATAAATAGAAATATAATAAT
* *
111953827 AGTAA-AAATATAAATA-GATAAT
1 AGTAATAAATAGAAATATAATAAT
111953849 --TAA-AAATTAGATAA-ATAATAAT
1 AGTAATAAA-TAGA-AATATAATAAT
111953871 AGTA
1 AGTA
111953875 TTAGAATAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
20 6 0.08
21 21 0.27
22 18 0.23
23 20 0.26
24 11 0.14
25 1 0.01
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.30
Consensus pattern (24 bp):
AGTAATAAATAGAAATATAATAAT
Found at i:111953818 original size:15 final size:15
Alignment explanation
Indices: 111953794--111953869 Score: 63
Period size: 15 Copynumber: 5.1 Consensus size: 15
111953784 ATATAAATAG
*
111953794 AAATAAAAATATAAT
1 AAATAGAAATATAAT
111953809 AAATAGAAATATAAT
1 AAATAGAAATATAAT
*
111953824 -AATAGTAAAAAT-AT
1 AAATAG-AAATATAAT
111953838 AAATAGATAAT-TAA-
1 AAATAGA-AATATAAT
111953852 AAATTAGATAA-ATAAT
1 AAA-TAGA-AATATAAT
111953868 AA
1 AA
111953870 TAGTATTAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
14 12 0.24
15 37 0.73
16 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:111953842 original size:44 final size:45
Alignment explanation
Indices: 111953757--111953875 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 45
111953747 TATATAAGAA
* *
111953757 AAAAGTAAT-AAT-GAAAATAATATTAGTATATAAATAGAAATA-
1 AAAATTAATAAATAGAAAATAATAATAGTATATAAATAGAAATAG
*
111953799 AAAATATAATAAATAGAAATATAATAATAGTA-A-AAATATAAATAG
1 AAAAT-TAATAAATAGAAA-ATAATAATAGTATATAAATAGAAATAG
*
111953844 ATAATTAA-AAATTAGATAAATAATAATAGTAT
1 AAAATTAATAAA-TAGA-AAATAATAATAGTAT
111953876 TAGAATAACA
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
42 4 0.06
43 7 0.11
44 32 0.49
45 11 0.17
46 11 0.17
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (45 bp):
AAAATTAATAAATAGAAAATAATAATAGTATATAAATAGAAATAG
Found at i:111953866 original size:19 final size:20
Alignment explanation
Indices: 111953788--111953867 Score: 65
Period size: 23 Copynumber: 3.9 Consensus size: 20
111953778 ATTAGTATAT
*
111953788 AAATAGAAATAAA-AATATAA
1 AAATATAAATAAATAAT-TAA
*
111953808 TAAATAGAAATATAATAATAGTAA
1 -AAATATAAATA-AATAAT--TAA
*
111953832 AAATATAAATAGATAATTAA
1 AAATATAAATAAATAATTAA
*
111953852 AAAT-TAGATAAATAAT
1 AAATATAAATAAATAAT
111953868 AATAGTATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
19 10 0.20
20 7 0.14
21 11 0.22
22 7 0.14
23 13 0.25
24 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (20 bp):
AAATATAAATAAATAATTAA
Found at i:111959190 original size:18 final size:17
Alignment explanation
Indices: 111959167--111959206 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
111959157 TGTTTGATTT
111959167 AAATAAATAAATTATTGA
1 AAATAAATAAATTATT-A
111959185 AAAT-AA-AAATTATTA
1 AAATAAATAAATTATTA
111959200 AAA-AAAT
1 AAATAAAT
111959207 TATTGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
15 6 0.30
16 8 0.40
17 2 0.10
18 4 0.20
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
AAATAAATAAATTATTA
Found at i:111962521 original size:46 final size:46
Alignment explanation
Indices: 111962469--111962686 Score: 312
Period size: 46 Copynumber: 4.7 Consensus size: 46
111962459 TGCCACAGTG
* * * * *
111962469 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
111962515 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
111962561 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
111962607 TCTTTCAACCATAGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
111962653 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
111962687 AGAGCACACT
Statistics
Matches: 156, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 152 0.97
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:111966550 original size:82 final size:79
Alignment explanation
Indices: 111966417--111966629 Score: 266
Period size: 80 Copynumber: 2.6 Consensus size: 79
111966407 ATAACACACT
* * **
111966417 GAAACAAAGCCTGCTAGGCACAGAG-TCTAATATAAATCATCGACACAAAGCTTGCTAGGCACAG
1 GAAA-AAAGCCTGCTAGGCACAGAGCT-TGATATAAATCATCG-TATGAAGCTTGCTAGGCAC--
* *
111966481 AGCCAGATATAAATTATCG
61 AGCCAGATATAAATCACCG
* *
111966500 GCAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGTATGAAGCTTGCTAGGCACAGCC
1 GAAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCATC-GTATGAAGCTTGCTAGGCACAGCC
*
111966565 TGATATAAATCACCG
65 AGATATAAATCACCG
*
111966580 GAAAAAAGCCTGCTAGACACAGAGCTTGATATAAATCATCGGTATGAAGC
1 GAAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCATC-GTATGAAGC
111966630 ATACTAGACT
Statistics
Matches: 115, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
80 62 0.54
82 48 0.42
83 5 0.04
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.20
Consensus pattern (79 bp):
GAAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCATCGTATGAAGCTTGCTAGGCACAGCCA
GATATAAATCACCG
Found at i:111966638 original size:41 final size:41
Alignment explanation
Indices: 111966422--111966623 Score: 210
Period size: 41 Copynumber: 5.0 Consensus size: 41
111966412 ACACTGAAAC
* * * ** *
111966422 AAAGCCTGCTAGGCACAGAGTCTAATATAAATCATCGACAC
1 AAAGCCTGCTAGGCACAGAGCCTGATATAAATCACCGGTAA
* * * * *
111966463 AAAGCTTGCTAGGCACAGAGCCAGATATAAATTATCGGCAA
1 AAAGCCTGCTAGGCACAGAGCCTGATATAAATCACCGGTAA
* * *
111966504 AAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGTAT
1 AAAGCCTGCTAGGCACAGAGCCTGATATAAATCACCGGTAA
* * *
111966545 GAAGCTTGCTAGGCAC--AGCCTGATATAAATCACCGGAAA
1 AAAGCCTGCTAGGCACAGAGCCTGATATAAATCACCGGTAA
* * *
111966584 AAAGCCTGCTAGACACAGAGCTTGATATAAATCATCGGTA
1 AAAGCCTGCTAGGCACAGAGCCTGATATAAATCACCGGTA
111966624 TGAAGCATAC
Statistics
Matches: 132, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 32 0.24
41 100 0.76
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (41 bp):
AAAGCCTGCTAGGCACAGAGCCTGATATAAATCACCGGTAA
Found at i:111969332 original size:15 final size:15
Alignment explanation
Indices: 111969312--111969342 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
111969302 AAGATGATGG
111969312 AAGAGTCGGAATCTA
1 AAGAGTCGGAATCTA
111969327 AAGAGTCGGAATCTA
1 AAGAGTCGGAATCTA
111969342 A
1 A
111969343 GTCCGATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (15 bp):
AAGAGTCGGAATCTA
Found at i:111974506 original size:20 final size:20
Alignment explanation
Indices: 111974469--111974506 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
111974459 TGATGGGGAG
*
111974469 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
111974489 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
111974507 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:111976457 original size:46 final size:46
Alignment explanation
Indices: 111976405--111976632 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
111976395 AGTGTGCTCT
*
111976405 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
111976451 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
111976497 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
111976543 GTGATATGAAATGAACAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
111976589 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
111976633 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 166 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:111979077 original size:24 final size:24
Alignment explanation
Indices: 111979021--111979077 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
111979011 ATAAAAATGG
* *
111979021 TTTATAAATAAAAATAAAATAATAT
1 TTTA-AAATTAAAATAAAATAAAAT
*
111979046 TTT-TAATTAAAATAAAATAAAAT
1 TTTAAAATTAAAATAAAATAAAAT
111979069 TTTAAAATT
1 TTTAAAATT
111979078 TCTTGAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 20 0.74
24 4 0.15
25 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TTTAAAATTAAAATAAAATAAAAT
Found at i:111984643 original size:22 final size:20
Alignment explanation
Indices: 111984617--111984658 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
111984607 AATAAGAGAG
111984617 TTAAAAATAAAATATATATTAA
1 TTAAAAATAAAA-ATA-ATTAA
111984639 TTAAAAATAAAAATAATTAA
1 TTAAAAATAAAAATAATTAA
111984659 AAAATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TTAAAAATAAAAATAATTAA
Found at i:111984647 original size:17 final size:17
Alignment explanation
Indices: 111984625--111984665 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
111984615 AGTTAAAAAT
*
111984625 AAAATATATATTAATTA
1 AAAATATATAATAATTA
*
111984642 AAAATA-AAAATAATTA
1 AAAATATATAATAATTA
111984658 AAAA-ATAT
1 AAAATATAT
111984666 TATCAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 1 0.05
16 13 0.65
17 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATATATAATAATTA
Found at i:111984951 original size:140 final size:140
Alignment explanation
Indices: 111984824--111985169 Score: 366
Period size: 140 Copynumber: 2.5 Consensus size: 140
111984814 AAATTTAAAA
* * * * * * *
111984824 AAAAAACTTAAAGCAACATGAAAT-AAAAATACAAATGTGAGTGGTAGATG-AATTGAATTTGAG
1 AAAAAACTTAAAGCAACATAAAATAAAAAATACAAATATAAGTAGAAGA-GAAATTGAACTCGAG
* *
111984887 ATTCAATG-ATGTAATTACAACTATCCAA-CATTTAACT-AAAGAACTAATATGTTAAAAAACAT
65 ACTCAA-GAATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATATGTTAAAAAACAT
111984949 TAATTAAAAATTT
129 TAA-TAAAAATTT
* * * *
111984962 AAAAAGCTTAAAGCAACGTAAAATAAAAAAATATAAATATAAGTAGAAGAGAAATTTAACTCGAG
1 AAAAAACTTAAAGCAACATAAAAT-AAAAAATACAAATATAAGTAGAAGAGAAATTGAACTCGAG
* * *
111985027 ACTCAAGAATGTAATTGCAACTATCTAACCATCTAACTAAAAGAACTAATATGTT-AAAAA-TTT
65 ACTCAAGAATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATATGTTAAAAAACATT
111985090 AATTAAAAATTT
130 AA-TAAAAATTT
* * * * * * ** *
111985102 AAAAAGCTTAAAGTAACATAAAATAAAAAA-ATAAATATGAGTAGGAGAGGAATCAAACTCAAGA
1 AAAAAACTTAAAGCAACATAAAATAAAAAATACAAATATAAGTAGAAGAGAAATTGAACTCGAGA
111985166 CTCA
66 CTCA
111985170 TAAATAAAAA
Statistics
Matches: 178, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
138 53 0.30
139 8 0.04
140 88 0.49
141 13 0.07
142 16 0.09
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.26
Consensus pattern (140 bp):
AAAAAACTTAAAGCAACATAAAATAAAAAATACAAATATAAGTAGAAGAGAAATTGAACTCGAGA
CTCAAGAATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATATGTTAAAAAACATTA
ATAAAAATTT
Found at i:111986833 original size:29 final size:30
Alignment explanation
Indices: 111986801--111986865 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
111986791 AATTAGTGCC
* *
111986801 TTAAATTC-TTAAAATTTTAAAA-TTTCTTA
1 TTAAATCCTTTAAAATTTTAAAACTTT-TAA
*
111986830 TTAAA-CCTTTACAATTTTAAAACTTTTAA
1 TTAAATCCTTTAAAATTTTAAAACTTTTAA
111986859 TTAAATC
1 TTAAATC
111986866 TCCAATTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 1 0.03
29 25 0.83
30 4 0.13
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.48
Consensus pattern (30 bp):
TTAAATCCTTTAAAATTTTAAAACTTTTAA
Found at i:111986909 original size:30 final size:30
Alignment explanation
Indices: 111986875--111986931 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
111986865 CTCCAATTAA
* *
111986875 TTTTGGAATTTTCATTAAACCTATAAACAT
1 TTTTGAAATTTTAATTAAACCTATAAACAT
* *
111986905 TTTTGAAATTTTAATTAACCCTCTAAA
1 TTTTGAAATTTTAATTAAACCTATAAA
111986932 TTTATTGCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (30 bp):
TTTTGAAATTTTAATTAAACCTATAAACAT
Found at i:111987120 original size:12 final size:13
Alignment explanation
Indices: 111987088--111987112 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
111987078 AAGTATAATA
111987088 AAATATTAAAAAT
1 AAATATTAAAAAT
111987101 AAATATTAAAAA
1 AAATATTAAAAA
111987113 ACATATTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATATTAAAAAT
Found at i:111988569 original size:21 final size:20
Alignment explanation
Indices: 111988530--111988576 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
111988520 TTTATTTTAT
* *
111988530 TTATTTAATGTAAATAATAA
1 TTATTTAAAGTAAAAAATAA
111988550 TTATTTAAAGATAAAAAATAA
1 TTATTTAAAG-TAAAAAATAA
111988571 TTATTT
1 TTATTT
111988577 TATTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TTATTTAAAGTAAAAAATAA
Found at i:111994311 original size:18 final size:17
Alignment explanation
Indices: 111994279--111994324 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
111994269 AAAAAAACTG
*
111994279 AATTTATTATTATTTTTA
1 AATTT-TTATAATTTTTA
111994297 ATATTTTTATAATTTTTA
1 A-ATTTTTATAATTTTTA
111994315 AATTATTTAT
1 AATT-TTTAT
111994325 TGACATGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 3 0.12
18 18 0.72
19 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
AATTTTTATAATTTTTA
Found at i:111999413 original size:3 final size:3
Alignment explanation
Indices: 111999407--111999445 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
111999397 AGAAGATGCT
*
111999407 AAG AAG AAG AAG AAG AAG AAG AAG GAG AA- AAG AA- AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
111999446 AATATTATGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:112001048 original size:16 final size:16
Alignment explanation
Indices: 112001016--112001049 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
112001006 AATTTATTAA
* *
112001016 TATATTTTTTTATTTT
1 TATATATTTTTACTTT
112001032 TATATATTTTTACTTT
1 TATATATTTTTACTTT
112001048 TA
1 TA
112001050 ACAATACTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TATATATTTTTACTTT
Found at i:112004705 original size:2 final size:2
Alignment explanation
Indices: 112004700--112004731 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
112004690 TATATATATA
112004700 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
112004732 AATGAGATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:112004916 original size:15 final size:15
Alignment explanation
Indices: 112004887--112004942 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
112004877 TATCTGTTTT
*
112004887 ATTGAATTTA-ATTG
1 ATTGAAATTATATTG
*
112004901 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
*
112004916 ATTGAATTTATATTG
1 ATTGAAATTATATTG
112004931 ATTG-AATTATAT
1 ATTGAAATTATAT
112004943 AATATATATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
14 16 0.44
15 20 0.56
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:112004924 original size:29 final size:28
Alignment explanation
Indices: 112004883--112004940 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 28
112004873 TGAATATCTG
112004883 TTTTATTGAATTTA-ATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
112004911 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
112004940 T
1 T
112004941 ATAATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 4 0.14
29 16 0.57
30 8 0.29
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:112005257 original size:23 final size:23
Alignment explanation
Indices: 112005227--112005313 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
112005217 GCTTTATCGA
* *
112005227 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
112005250 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
112005271 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
112005293 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
112005314 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:112005495 original size:18 final size:19
Alignment explanation
Indices: 112005474--112005514 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
112005464 AATGAAATGA
112005474 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
112005492 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
112005511 GAAA
1 GAAA
112005515 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:112009180 original size:16 final size:18
Alignment explanation
Indices: 112009161--112009198 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
112009151 TTAGTAATGT
112009161 TTTTGTAT-T-AAAAATA
1 TTTTGTATCTCAAAAATA
*
112009177 TTTTTTATCTCAAAAATA
1 TTTTGTATCTCAAAAATA
112009195 TTTT
1 TTTT
112009199 TTAAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTGTATCTCAAAAATA
Found at i:112016877 original size:10 final size:11
Alignment explanation
Indices: 112016857--112016890 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
112016847 CTTCATCAGT
112016857 AAAAATATTAA
1 AAAAATATTAA
112016868 AAAAAT-TTAA
1 AAAAATATTAA
112016878 AATAAATATTAA
1 AA-AAATATTAA
112016890 A
1 A
112016891 TATAAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.29
11 10 0.48
12 5 0.24
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAAATATTAA
Found at i:112021916 original size:14 final size:15
Alignment explanation
Indices: 112021892--112021921 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
112021882 TTCACTGCCC
112021892 AAAAGAAAAAAAAAG
1 AAAAGAAAAAAAAAG
112021907 AAAA-AAAAAAAAAG
1 AAAAGAAAAAAAAAG
112021921 A
1 A
112021922 GAGGATAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAAAAG
Found at i:112031305 original size:18 final size:19
Alignment explanation
Indices: 112031282--112031320 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
112031272 TCATTTGGGG
*
112031282 AAGAAAGGAGAGAA-AAGA
1 AAGAAAGAAGAGAAGAAGA
112031300 AAGAAAGAAGAGAAGAAGA
1 AAGAAAGAAGAGAAGAAGA
112031319 AA
1 AA
112031321 AAGGAGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAGAAGAAGA
Found at i:112031363 original size:6 final size:6
Alignment explanation
Indices: 112031352--112031376 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
112031342 GAAGGGAAGA
112031352 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
112031377 GAAGGAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:112031390 original size:20 final size:19
Alignment explanation
Indices: 112031347--112031390 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
112031337 TGAGGGAAGG
112031347 GAAGAAAAAAGAAAAAGAA
1 GAAGAAAAAAGAAAAAGAA
* **
112031366 AAAGAAAAAGAGAAGGAGAA
1 GAAGAAAAA-AGAAAAAGAA
112031386 GAAGA
1 GAAGA
112031391 GGGAGGGAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (19 bp):
GAAGAAAAAAGAAAAAGAA
Found at i:112031858 original size:17 final size:16
Alignment explanation
Indices: 112031835--112031880 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
112031825 TATATTAATG
*
112031835 AAAAAATAAAATACGA
1 AAAAAATAGAATACGA
*
112031851 AAAGAAATAGAATATGA
1 AAA-AAATAGAATACGA
112031868 AAAAAATAGAATA
1 AAAAAATAGAATA
112031881 AAATACGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.15
Consensus pattern (16 bp):
AAAAAATAGAATACGA
Found at i:112031876 original size:16 final size:16
Alignment explanation
Indices: 112031814--112031880 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
112031804 TAAAAAAGAA
* *
112031814 AATATGAAAAATATAT
1 AATATGAAAAAAATAG
* *
112031830 TA-ATG-AAAAAATAA
1 AATATGAAAAAAATAG
*
112031844 AATACGAAAAGAAATAG
1 AATATGAAAA-AAATAG
112031861 AATATGAAAAAAATAG
1 AATATGAAAAAAATAG
112031877 AATA
1 AATA
112031881 AAATACGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
14 8 0.20
15 5 0.12
16 14 0.34
17 14 0.34
ACGTcount: A:0.67, C:0.01, G:0.10, T:0.21
Consensus pattern (16 bp):
AATATGAAAAAAATAG
Found at i:112032269 original size:138 final size:138
Alignment explanation
Indices: 112031900--112032521 Score: 921
Period size: 138 Copynumber: 4.5 Consensus size: 138
112031890 AAATAGTATA
* * * * *
112031900 AAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAAAATTTTAA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
* * *
112031965 AAATATAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACATTAAAATAATATATTTGAAACAT
66 AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
112032030 TATGTACTGT
131 TATGTAC--T
*
112032040 ACAAAATAAGAT-AAAAATAAAATACGAAAATAGTATA-TTTAAAAAATAAAATACGAATA-TTT
1 --AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTT
* * *
112032102 TAGAAATACAAACAAATGAACAAAATTAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAA
64 TA-AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAA
*
112032167 CTTTATGTACT
128 CATTATGTACT
112032178 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
*
112032243 AAATACAAACAAAGGGACAAAATTAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
66 AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
112032308 TATGTACT
131 TATGTACT
* * * *
112032316 AAAATAAGATAAAAAATAAAATACTAAAATAGTTTATTTTAAAAATTAAAATCCAAATA-TTTTA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
* * * * *
112032380 GAAATACAAATAAAGAGACAAAATCAAGGTTATTTTAAAAATACTAAAATAATACATTTGAAACA
66 -AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACA
112032445 TTATGTACT
130 TTATGTACT
* * *
112032454 AAAATAAGATAAAAAATAAAATACGAAAATAGTATA-TTTAAAAAATAGAATCCGAAAATTTTAA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
112032518 AAAT
66 AAAT
112032522 TTTAGAAATA
Statistics
Matches: 440, Mismatches: 34, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
136 10 0.02
137 52 0.12
138 252 0.57
139 9 0.02
140 84 0.19
141 24 0.05
142 9 0.02
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (138 bp):
AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
TATGTACT
Found at i:112032479 original size:276 final size:276
Alignment explanation
Indices: 112031900--112032521 Score: 982
Period size: 278 Copynumber: 2.2 Consensus size: 276
112031890 AAATAGTATA
* * *
112031900 AAAATAATATAAAAAATAAAATACAAAAATAGTATATTTTAAAAAATAAAATCTGAAAATTTTAA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATTTTAA
* * *
112031965 AAATATAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACATTAAAATAATATATTTGAAACAT
66 AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
*
112032030 TATGTACTGTACAAAATAAGATAAAAATAAAATACGAAAATAGTATATTTAAAAAATAAAATACG
131 TATGTAC-GTA-AAAATAAGATAAAAATAAAATACGAAAATAGTATATTTAAAAAATAAAATACA
* *
112032095 AATATTTTAGAAATACAAACAAATGAACAAAATTAGGGTTATTTAAAAAACACTAAAATAATACA
194 AATATTTTAGAAATACAAACAAATGAACAAAATCAAGGTTATTTAAAAAACACTAAAATAATACA
*
112032160 TTTGAAACTTTATGTACT
259 TTTGAAACATTATGTACT
* *
112032178 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTTA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATTTTAA
*
112032243 AAATACAAACAAAGGGACAAAATTAGGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
66 AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
* * * *
112032308 TATGTAC-T-AAAATAAGATAAAAAATAAAATACTAAAATAGTTTATTTTAAAAATTAAAATCCA
131 TATGTACGTAAAAATAAGAT-AAAAATAAAATACGAAAATAGTATA-TTTAAAAAATAAAATACA
* * *
112032371 AATATTTTAGAAATACAAATAAA-GAGACAAAATCAAGGTTATTTTAAAAATACTAAAATAATAC
194 AATATTTTAGAAATACAAACAAATGA-ACAAAATCAAGGTTATTTAAAAAACACTAAAATAATAC
112032435 ATTTGAAACATTATGTACT
258 ATTTGAAACATTATGTACT
*
112032454 AAAATAAGATAAAAAATAAAATACGAAAATAGTATA-TTTAAAAAATAGAATCCGAAAATTTTAA
1 AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATTTTAA
112032518 AAAT
66 AAAT
112032522 TTTAGAAATA
Statistics
Matches: 318, Mismatches: 23, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
274 10 0.03
275 54 0.17
276 126 0.40
278 128 0.40
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (276 bp):
AAAATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATTTTAA
AAATACAAACAAAGGGACAAAATTAAGGTTATTTAAAAAACACTAAAATAATACATTTGAAACAT
TATGTACGTAAAAATAAGATAAAAATAAAATACGAAAATAGTATATTTAAAAAATAAAATACAAA
TATTTTAGAAATACAAACAAATGAACAAAATCAAGGTTATTTAAAAAACACTAAAATAATACATT
TGAAACATTATGTACT
Found at i:112034685 original size:72 final size:72
Alignment explanation
Indices: 112034562--112034706 Score: 193
Period size: 72 Copynumber: 2.0 Consensus size: 72
112034552 AGTCTGAGCA
* * * * *
112034562 ATCGTATTCACATTCGGCTAATACTTCTTATCATCCGAATTTTCAGAGTAATGACTATTTACTGG
1 ATCGCATTCACATTCGGCCAATACTTCTTATCATCAGAATTTGCAGAGTAATGACTATTTACCGG
112034627 GCTCGTC
66 GCTCGTC
* * * *
112034634 ATCGCATTCACATTCGGCCGATACTTCTTATCATCTAG-ATTTGCCGGGTAATGACTATTTTCCG
1 ATCGCATTCACATTCGGCCAATACTTCTTATCATC-AGAATTTGCAGAGTAATGACTATTTACCG
112034698 GGCTCGTC
65 GGCTCGTC
112034706 A
1 A
112034707 GAGGGCGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
72 62 0.98
73 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (72 bp):
ATCGCATTCACATTCGGCCAATACTTCTTATCATCAGAATTTGCAGAGTAATGACTATTTACCGG
GCTCGTC
Found at i:112035281 original size:63 final size:63
Alignment explanation
Indices: 112035213--112035359 Score: 276
Period size: 63 Copynumber: 2.3 Consensus size: 63
112035203 CTACTAATAC
*
112035213 AAATTAAATACATTACAACATTAATCTAATTGGAACAAACTTTGCAATATAATTTTTTTATAT
1 AAATTAAATACATTACAACATTAATCAAATTGGAACAAACTTTGCAATATAATTTTTTTATAT
*
112035276 AAATTAAATACATTAAAACATTAATCAAATTGGAACAAACTTTGCAATATAATTTTTTTATAT
1 AAATTAAATACATTACAACATTAATCAAATTGGAACAAACTTTGCAATATAATTTTTTTATAT
112035339 AAATTAAATACATTACAACAT
1 AAATTAAATACATTACAACAT
112035360 AAGCTCAATT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 81 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (63 bp):
AAATTAAATACATTACAACATTAATCAAATTGGAACAAACTTTGCAATATAATTTTTTTATAT
Found at i:112038431 original size:16 final size:16
Alignment explanation
Indices: 112038412--112038444 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
112038402 TTGCTGAAAT
112038412 TTTTTTTCCTTCT-TTC
1 TTTTTTT-CTTCTCTTC
112038428 TTTTTTTCTTCTCTTC
1 TTTTTTTCTTCTCTTC
112038444 T
1 T
112038445 CCCTCCCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTTCTTCTCTTC
Found at i:112041074 original size:14 final size:15
Alignment explanation
Indices: 112041047--112041075 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
112041037 CCAGATGAGG
112041047 AATTTTACAAATTCA
1 AATTTTACAAATTCA
112041062 AATTTTA-AAATTCA
1 AATTTTACAAATTCA
112041076 TGTGATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTTTACAAATTCA
Found at i:112042919 original size:78 final size:78
Alignment explanation
Indices: 112042829--112042984 Score: 258
Period size: 78 Copynumber: 2.0 Consensus size: 78
112042819 TACATCACAT
*
112042829 AATATATCACATTTAAGCATCATTTGCAAATCATCATTAGATTAAGTAGAAATACTTACTCACAA
1 AATATATCACATTTAAGCATCATTTGCAAATCATCATTAGATTAAGTAGAAACACTTACTCACAA
112042894 AACTTAGTATAGG
66 AACTTAGTATAGG
* * * * *
112042907 AATATATTACATTTAAGCATCATTTGCAAATTATCATTAGATTAGGTAGAAACACTTACTCATAT
1 AATATATCACATTTAAGCATCATTTGCAAATCATCATTAGATTAAGTAGAAACACTTACTCACAA
112042972 AACTTAGTATAGG
66 AACTTAGTATAGG
112042985 TGATTAGGCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (78 bp):
AATATATCACATTTAAGCATCATTTGCAAATCATCATTAGATTAAGTAGAAACACTTACTCACAA
AACTTAGTATAGG
Found at i:112048379 original size:7 final size:7
Alignment explanation
Indices: 112048367--112048403 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
112048357 AAGTGAATAT
112048367 TGGTATA
1 TGGTATA
112048374 TGGTATA
1 TGGTATA
112048381 TGGTATA
1 TGGTATA
112048388 TGGTATA
1 TGGTATA
112048395 TGGTATA
1 TGGTATA
112048402 TG
1 TG
112048404 ATAATTTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (7 bp):
TGGTATA
Found at i:112051319 original size:23 final size:21
Alignment explanation
Indices: 112051293--112051340 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
112051283 ACCCACAAAA
112051293 TAATAAATTATTTGCTTTTACGG
1 TAATAAA--ATTTGCTTTTACGG
*
112051316 TAAT--AATTTGCTTTTATGG
1 TAATAAAATTTGCTTTTACGG
112051335 TAATAA
1 TAATAA
112051341 TTGCATACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
19 17 0.77
21 1 0.05
23 4 0.18
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (21 bp):
TAATAAAATTTGCTTTTACGG
Found at i:112051326 original size:19 final size:19
Alignment explanation
Indices: 112051302--112051342 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
112051292 ATAATAAATT
112051302 ATTTGCTTTTACGGTAATA
1 ATTTGCTTTTACGGTAATA
*
112051321 ATTTGCTTTTATGGTAATA
1 ATTTGCTTTTACGGTAATA
112051340 ATT
1 ATT
112051343 GCATACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (19 bp):
ATTTGCTTTTACGGTAATA
Found at i:112054931 original size:42 final size:42
Alignment explanation
Indices: 112054904--112054994 Score: 155
Period size: 42 Copynumber: 2.1 Consensus size: 42
112054894 TTATATCTTT
*
112054904 TAATCATATCTGCTCTTTTTGATACAATGTCCAGAATAACTTA
1 TAATC-TATCTGCTCTTTTTGATACAATCTCCAGAATAACTTA
*
112054947 TAATCTATCTGCTCTTTTTGATACAATGTCCAGAATAACTTA
1 TAATCTATCTGCTCTTTTTGATACAATCTCCAGAATAACTTA
112054989 TAATCT
1 TAATCT
112054995 CTCCCCCAAC
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 43 0.90
43 5 0.10
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.41
Consensus pattern (42 bp):
TAATCTATCTGCTCTTTTTGATACAATCTCCAGAATAACTTA
Found at i:112056536 original size:6 final size:6
Alignment explanation
Indices: 112056529--112056569 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
112056519 CCAACAGAAA
*
112056529 CAACAA CAACAG CAACAG CAACAG CAACAG CAACAG CAACA
1 CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACA
112056570 AATGCTTCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.54, C:0.34, G:0.12, T:0.00
Consensus pattern (6 bp):
CAACAG
Found at i:112056792 original size:21 final size:21
Alignment explanation
Indices: 112056766--112056805 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
112056756 CACTCCTAAT
112056766 TCACAA-CAACAGCAACAGCCC
1 TCACAATC-ACAGCAACAGCCC
112056787 TCACAATCACAGCAACAGC
1 TCACAATCACAGCAACAGC
112056806 AACAGCAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.42, C:0.40, G:0.10, T:0.07
Consensus pattern (21 bp):
TCACAATCACAGCAACAGCCC
Found at i:112062831 original size:3 final size:3
Alignment explanation
Indices: 112062825--112062860 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
112062815 GATGATGATG
112062825 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
112062861 TACTTTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:112073504 original size:25 final size:25
Alignment explanation
Indices: 112073470--112073518 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
112073460 CTAAACAGAT
112073470 AGATAGATATCTGGGATTTTACAAC
1 AGATAGATATCTGGGATTTTACAAC
112073495 AGATAGATATCTGGGATTTTACAA
1 AGATAGATATCTGGGATTTTACAA
112073519 TAAACCTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (25 bp):
AGATAGATATCTGGGATTTTACAAC
Found at i:112077516 original size:58 final size:59
Alignment explanation
Indices: 112077446--112077557 Score: 199
Period size: 58 Copynumber: 1.9 Consensus size: 59
112077436 AACATAAATA
*
112077446 CCAACTATAACTTTCAATAGCGAAAATATA-AAGCATGCATATAAGCAAAAACCAAAAG
1 CCAACTATAACTTTCAATAGCGAAAATAAAGAAGCATGCATATAAGCAAAAACCAAAAG
*
112077504 CCAACTATAACTTTCAATAGGGAAAATAAAGAAGCATGCATATAAGCAAAAACC
1 CCAACTATAACTTTCAATAGCGAAAATAAAGAAGCATGCATATAAGCAAAAACC
112077558 CTAAACCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
58 28 0.55
59 23 0.45
ACGTcount: A:0.51, C:0.19, G:0.12, T:0.19
Consensus pattern (59 bp):
CCAACTATAACTTTCAATAGCGAAAATAAAGAAGCATGCATATAAGCAAAAACCAAAAG
Found at i:112081976 original size:16 final size:16
Alignment explanation
Indices: 112081954--112082008 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
112081944 GAAAAATTAT
112081954 ATTTTCTATCTTTCCA
1 ATTTTCTATCTTTCCA
* *
112081970 TTTTTCTACCCTTT-CA
1 ATTTTCTA-TCTTTCCA
* *
112081986 ATTCTCTTTCTTTCCA
1 ATTTTCTATCTTTCCA
112082002 ATTTTCT
1 ATTTTCT
112082009 TTCCACTCTA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 4 0.13
16 22 0.73
17 4 0.13
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTCTATCTTTCCA
Found at i:112086241 original size:26 final size:26
Alignment explanation
Indices: 112086182--112086234 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
112086172 CCCAGCCCCC
112086182 ATCCCAGTCCCTTTCTAAAAATTTCT
1 ATCCCAGTCCCTTTCTAAAAATTTCT
112086208 ATCCCAGTCCCTTTCTAAAAATTTCT
1 ATCCCAGTCCCTTTCTAAAAATTTCT
112086234 A
1 A
112086235 CTTCAGTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.38
Consensus pattern (26 bp):
ATCCCAGTCCCTTTCTAAAAATTTCT
Found at i:112088974 original size:4 final size:4
Alignment explanation
Indices: 112088965--112088994 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
112088955 TGTGTTTGGA
112088965 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
112088995 CCGGTTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:112091911 original size:22 final size:24
Alignment explanation
Indices: 112091869--112091912 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
112091859 TAACTAAGTT
112091869 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
112091893 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
112091913 TCTTGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:112096036 original size:60 final size:60
Alignment explanation
Indices: 112095964--112096085 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
112095954 TCTCTAAACT
112095964 ATATAAATTATATTAATAAGATTCTTCTATTATGAATAGTTAATTTAATTATTAAATGAG
1 ATATAAATTATATTAATAAGATTCTTCTATTATGAATAGTTAATTTAATTATTAAATGAG
*
112096024 ATATAGATTATATTAATAAGATTCTTCTATTATGAATAGTTAATTTAATTATTAAATGAG
1 ATATAAATTATATTAATAAGATTCTTCTATTATGAATAGTTAATTTAATTATTAAATGAG
112096084 AT
1 AT
112096086 GTGAAGTCTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (60 bp):
ATATAAATTATATTAATAAGATTCTTCTATTATGAATAGTTAATTTAATTATTAAATGAG
Found at i:112098769 original size:30 final size:32
Alignment explanation
Indices: 112098729--112098787 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
112098719 GACATGATAG
*
112098729 ATATTGATTTACAGTTCTAA-ATTTATATTAA
1 ATATTGATTTACAGTTCTAACATATATATTAA
*
112098760 ATATT-ATTTACGGTTCTAACATATATAT
1 ATATTGATTTACAGTTCTAACATATATAT
112098788 CCTCAAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.47
Consensus pattern (32 bp):
ATATTGATTTACAGTTCTAACATATATATTAA
Found at i:112100378 original size:21 final size:21
Alignment explanation
Indices: 112100354--112100393 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
112100344 AACAGAACTG
112100354 CTGATGTGGCAAGTTAACTAC
1 CTGATGTGGCAAGTTAACTAC
*
112100375 CTGATGTGGCCAGTTAACT
1 CTGATGTGGCAAGTTAACT
112100394 TGCCACGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAC
Found at i:112102299 original size:3 final size:3
Alignment explanation
Indices: 112102293--112102331 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
112102283 TTTTTTATAG
* * *
112102293 TCT TCT TCT GCT GCT GCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
112102332 CTGTTAAGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.33, G:0.08, T:0.59
Consensus pattern (3 bp):
TCT
Found at i:112102534 original size:30 final size:31
Alignment explanation
Indices: 112102467--112102535 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
112102457 ACTGTTAATC
* *
112102467 AGTGACTGTTTTGTCACTTTTTTATAACGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
* *
112102498 AATGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
112102527 GAGTGACTG
1 -AGTGACTG
112102536 AAATGAAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 5 0.16
30 13 0.41
31 14 0.44
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTCATAAAGTT
Found at i:112103307 original size:2 final size:2
Alignment explanation
Indices: 112103300--112103337 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
112103290 TATTGTCTTT
112103300 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
112103338 ATGTTAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.