Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 375 of 410
Found at i:114424956 original size:88 final size:88
Alignment explanation
Indices: 114424802--114424966 Score: 251
Period size: 88 Copynumber: 1.9 Consensus size: 88
114424792 GTGAATTATA
* *
114424802 GATCTTGTCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGATCCTTAACCCCCTAAATAGT
1 GATCTTGCCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAATAGT
*
114424867 AGGGTAATAGGCCGAAGATTGTT
66 AGGGTAACAGGCCGAAGATTGTT
* * * *
114424890 GATCTTGCCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCTCCTAAGA-AG
1 GATCTTGCCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAA-ATAG
114424954 TAGGGTAACAGGC
65 TAGGGTAACAGGC
114424967 TGAAAATTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
88 68 0.99
89 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (88 bp):
GATCTTGCCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAATAGT
AGGGTAACAGGCCGAAGATTGTT
Found at i:114424990 original size:88 final size:88
Alignment explanation
Indices: 114424801--114424991 Score: 233
Period size: 88 Copynumber: 2.2 Consensus size: 88
114424791 GGTGAATTAT
*
114424801 AGATCTTGTCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGATCCTTAACCCCCTAAATAG
1 AGATCTTGTCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAATAG
* * **
114424866 TAGGGTAATAGGCCGAAGATTGT
66 TAGGGTAACAGGCCGAAAATTCA
* * * * * *
114424889 TGATCTTGCCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGCCTTAACCTCCTAAGA-A
1 AGATCTTGTCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAA-ATA
*
114424953 GTAGGGTAACAGGCTGAAAATTACA
65 GTAGGGTAACAGGCCGAAAATT-CA
*
114424978 AG-TCTTATCTCCCT
1 AGATCTTGTCTCCCT
114424992 GAAGTTGCAA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
88 84 0.98
89 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (88 bp):
AGATCTTGTCTCCCTAAACAATAGTGGAGCAAATCGAAGACAGTGAGCCTTAACCCCCTAAATAG
TAGGGTAACAGGCCGAAAATTCA
Found at i:114425031 original size:45 final size:43
Alignment explanation
Indices: 114424975--114425086 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 43
114424965 GCTGAAAATT
*
114424975 ACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAAA-CTAAAGTT
1 ACAA-TCTTATCTCCCTGAAGTTGCAATGGAGCAAATC-AAAGTC
* * * *
114425019 AGCAGATCTTATCTCCCCGAAGTTGTAGTGGAGCAGATCAAAGTC
1 A-CA-ATCTTATCTCCCTGAAGTTGCAATGGAGCAAATCAAAGTC
*
114425064 ACAATCCTTATCTCTCTGAAGTT
1 ACAAT-CTTATCTCCCTGAAGTT
114425087 ACACGAACCA
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
43 2 0.04
44 18 0.32
45 35 0.61
46 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
ACAATCTTATCTCCCTGAAGTTGCAATGGAGCAAATCAAAGTC
Found at i:114427823 original size:130 final size:130
Alignment explanation
Indices: 114427578--114427904 Score: 441
Period size: 130 Copynumber: 2.5 Consensus size: 130
114427568 ATTCATTTAA
* * *
114427578 AAAATTCTTTAAAACGAAGGCAATGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGC
1 AAAATTCTTTAAAACGAAGGCAATGTTCGAAGTTTGGAAATTCGGGG-ATCGTGCCCTATCGTGC
* * **
114427643 TGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCGGTCATGTCTT-
65 TGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCACTCATGTCTTC
114427707 T
130 T
* *
114427708 AAGAATTCTTTAAAACGAAGGCAATGTTCGAAGTTTGGAAATCCGGGGATAGTGCCCTATCGTGC
1 AA-AATTCTTTAAAACGAAGGCAATGTTCGAAGTTTGGAAATTCGGGGATCGTGCCCTATCGTGC
* *
114427773 TGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATTTCC-TTAGAATTTCACTTATGTTTT
65 TGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATA-TTCCTTTAGAATTTCACTCATGTCTT
114427837 CT
129 CT
* * *
114427839 AAAA--CTTTAAAAC-AAGGTAATGTTC-AATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTG
1 AAAATTCTTTAAAACGAAGGCAATGTTCGAA-GTTTGGAAATTCG-GGGATCGTGCCCTATCGTG
114427900 CTGGG
64 CTGGG
114427905 CTTCGGTTTC
Statistics
Matches: 176, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
126 2 0.01
127 23 0.13
128 30 0.17
130 73 0.41
131 48 0.27
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (130 bp):
AAAATTCTTTAAAACGAAGGCAATGTTCGAAGTTTGGAAATTCGGGGATCGTGCCCTATCGTGCT
GGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCACTCATGTCTTCT
Found at i:114433627 original size:24 final size:24
Alignment explanation
Indices: 114433600--114433645 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
114433590 CATCTAGTTA
114433600 AGAGCATTTGATTCATTCTAAACT
1 AGAGCATTTGATTCATTCTAAACT
114433624 AGAGCATTTGATTCATTCTAAA
1 AGAGCATTTGATTCATTCTAAA
114433646 TCATGACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (24 bp):
AGAGCATTTGATTCATTCTAAACT
Found at i:114433847 original size:51 final size:48
Alignment explanation
Indices: 114433742--114434139 Score: 260
Period size: 45 Copynumber: 8.4 Consensus size: 48
114433732 TCGATTGAAG
* * *
114433742 CTCCCTGAAGTTGCAGTGGAGTAGACTGAAG----ATAGCGAATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTAAAATA-CAAACCTTAT
*
114433787 CTCCTTGAAGTTGCAGTGGAGTAGATTGAAGCTAAAAATCACAAACCTTAT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-T-AAAAT-ACAAACCTTAT
* * **
114433838 CTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGT----TACAAGTCTTAT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTAAAATACAAACCTTAT
* * * * * *
114433882 CTCCCTGAAGTCGCAGTGGAGTAGACTGAAG-ATAGT--GAATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTAAAATACAAACCTTAT
* * **
114433927 CTCCCTGAAGTTGTAGCGGAACAGATTGAAGCTAGAAATCACAAACCTTAT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-TA-AAAT-ACAAACCTTAT
* * ** *
114433978 CTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT----TACAAGTCTTGT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTAAAATACAAACCTTAT
* * ** *
114434022 CTCCCTGAAGTTGTAGTGGAGCAGGCTGAAG----ATAGCAAATCTTAT
1 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTAAAATA-CAAACCTTAT
* *
114434067 CTCCCTAAAGTTGCAGTAGAAGTAGATTGAAGCTAGAAATCACAAACCTTAT
1 CTCCCTGAAGTTGCAGT-GGAGTAGATTGAAG-TA-AAAT-ACAAACCTTAT
*
114434119 CTCCCT-AATGTTGTAGTGGAG
1 CTCCCTGAA-GTTGCAGTGGAG
114434140 CAAGTTGAAG
Statistics
Matches: 280, Mismatches: 45, Indels: 50
0.75 0.12 0.13
Matches are distributed among these distances:
44 75 0.27
45 86 0.31
46 10 0.04
47 2 0.01
48 2 0.01
50 2 0.01
51 77 0.28
52 25 0.09
53 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (48 bp):
CTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTAAAATACAAACCTTAT
Found at i:114433898 original size:44 final size:44
Alignment explanation
Indices: 114433827--114434247 Score: 261
Period size: 44 Copynumber: 9.2 Consensus size: 44
114433817 GCTAAAAATC
* * * *
114433827 ACAAACCTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
* * * * *
114433871 ACAAGTCTTATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
** * * *
114433915 AGTGAATCTTATCTCCCTGAAGTTGTAGCGGAACAGATTGAAGCTAGAAAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-----T
* *
114433966 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
1 -ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
* * * ** *
114434011 ACAAGTCTTGTCTCCCTGAAGTTGTAGTGGAGCAGGCTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
* * *
114434055 AGCAAATCTTATCTCCCTAAAGTTGCAGTAGAAGTAGATTGAAGCTAGAAAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAG-T-----T
* * *
114434107 CACAAACCTTATCTCCCT-AATGTTGTAGTGGAGCA-AGTTGAAGCT
1 -ACAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGA-TTGAAGTT
* * * * * *
114434152 ACAAGTCTTATCTCCCTAAAGTTGTAGTCGAGCAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
* * * * * ** * *
114434196 AGTAGATCTTATTTCTCTGAAGTTGCAGTAGAATAGATTAAAGAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
114434241 ACAAATC
1 ACAAATC
114434248 ATAAATCTTG
Statistics
Matches: 292, Mismatches: 63, Indels: 44
0.73 0.16 0.11
Matches are distributed among these distances:
44 116 0.40
45 92 0.32
46 10 0.03
50 2 0.01
51 47 0.16
52 24 0.08
53 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTT
Found at i:114433994 original size:140 final size:140
Alignment explanation
Indices: 114433742--114434248 Score: 694
Period size: 140 Copynumber: 3.6 Consensus size: 140
114433732 TCGATTGAAG
* *
114433742 CTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAATCTTATCTCCTTGAAGTTGCAGTGGA
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGA
* * * *
114433807 GTAGATTGAAGCTAAAAATCACAAACCTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGTTA
66 ATAGATTGAAGCTAGAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
114433872 CAAGTCTTAT
131 CAAGTCTTAT
* * * * *
114433882 CTCCCTGAAGTCGCAGTGGAGTAGACTGAAGATAGTGAATCTTATCTCCCTGAAGTTGTAGCGGA
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGA
*
114433947 ACAGATTGAAGCTAGAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
66 ATAGATTGAAGCTAGAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
*
114434012 CAAGTCTTGT
131 CAAGTCTTAT
* * * * *
114434022 CTCCCTGAAGTTGTAGTGGAGCAGGCTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTAGA
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGA
* * *
114434087 AGTAGATTGAAGCTAGAAATCACAAACCTTATCTCCCT-AATGTTGTAGTGGAGCAAGTTGAAGC
66 A-TAGATTGAAGCTAGAAATCACAAACCTTATCTCCCTGAA-GTTGCAGTGGAGCAGGTTGAAGT
114434151 TACAAGTCTTAT
129 TACAAGTCTTAT
* * * * * * *
114434163 CTCCCTAAAGTTGTAGTCGAGCAGACTGAAGATAG-TAGATCTTATTTCTCTGAAGTTGCAGTAG
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGA-ATCTTATCTCCCTGAAGTTGCAGTGG
* * *
114434227 AATAGATTAAAGATACAAATCA
65 AATAGATTGAAGCTAGAAATCA
114434249 TAAATCTTGT
Statistics
Matches: 328, Mismatches: 36, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
140 205 0.62
141 123 0.38
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (140 bp):
CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGA
ATAGATTGAAGCTAGAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
CAAGTCTTAT
Found at i:114434062 original size:96 final size:95
Alignment explanation
Indices: 114433877--114434062 Score: 230
Period size: 96 Copynumber: 1.9 Consensus size: 95
114433867 AGTTACAAGT
* *
114433877 CTTATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAGATAGTGAATCTTATCTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGATAG-CAATCTTATCTCCCTGAAGTTGTA
* *
114433942 GCGGAACAGATTGAAGCTAGAAATCACAAAC
65 GCGGAACAGACTGAAGATAGAAATCACAAAC
* ** * *
114433973 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTGTCTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGATAGCAA-TCTTATCTCCCTGAAGTTGTA
* * *
114434037 GTGGAGCAGGCTGAAGATAGCAAATC
65 GCGGAACAGACTGAAGATAG-AAATC
114434063 TTATCTCCCT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 2 0.03
95 35 0.46
96 39 0.51
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (95 bp):
CTTATCTCCCTGAAGTCGCAGTGGAGCAGACTGAAGATAGCAATCTTATCTCCCTGAAGTTGTAG
CGGAACAGACTGAAGATAGAAATCACAAAC
Found at i:114434275 original size:281 final size:280
Alignment explanation
Indices: 114433742--114434248 Score: 730
Period size: 281 Copynumber: 1.8 Consensus size: 280
114433732 TCGATTGAAG
* * * * *
114433742 CTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAATCTTATCTCCTTGAAGTTGCAGTGGA
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGAA
* * * *
114433807 GTAGATTGAAGCTAAAAATCACAAACCTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTGAAGTTA
66 GTAGATTGAAGCTAAAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGCTA
* * *
114433872 CAAGTCTTATCTCCCTGAAGTCGCAGTGGAGTAGACTGAAGATAGTGAATCTTATCTCCCTGAAG
131 CAAGTCTTATCTCCCTAAAGTCGCAGTCGAGCAGACTGAAGATAGTGAATCTTATCTCCCTGAAG
* * * * *
114433937 TTGTAGCGGAACAGATTGAAGCTAGAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
196 TTGCAGCAGAACAGATTAAAGATACAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
114434002 GTTGAAGTTACAAGTCTTGT
261 GTTGAAGTTACAAGTCTTGT
* *
114434022 CTCCCTGAAGTTGTAGTGGAGCAGGCTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTAGA
1 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGT-GA
* *
114434087 AGTAGATTGAAGCTAGAAATCACAAACCTTATCTCCCT-AATGTTGTAGTGGAGCAAGTTGAAGC
65 AGTAGATTGAAGCTAAAAATCACAAACCTTATCTCCCTGAA-GTTGCAGTGGAGCAAGTTGAAGC
* * * *
114434151 TACAAGTCTTATCTCCCTAAAGTTGTAGTCGAGCAGACTGAAGATAGT-AGATCTTATTTCTCTG
129 TACAAGTCTTATCTCCCTAAAGTCGCAGTCGAGCAGACTGAAGATAGTGA-ATCTTATCTCCCTG
* *
114434215 AAGTTGCAGTAGAATAGATTAAAGATACAAATCA
193 AAGTTGCAGCAGAACAGATTAAAGATACAAATCA
114434249 TAAATCTTGT
Statistics
Matches: 197, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
280 59 0.30
281 138 0.70
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (280 bp):
CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGAA
GTAGATTGAAGCTAAAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGCTA
CAAGTCTTATCTCCCTAAAGTCGCAGTCGAGCAGACTGAAGATAGTGAATCTTATCTCCCTGAAG
TTGCAGCAGAACAGATTAAAGATACAAATCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
GTTGAAGTTACAAGTCTTGT
Found at i:114435663 original size:3 final size:3
Alignment explanation
Indices: 114435657--114435695 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
114435647 CAACAACAAC
114435657 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
114435696 TTTGGCTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:114435949 original size:28 final size:28
Alignment explanation
Indices: 114435885--114435964 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 28
114435875 TTTAAAAATA
114435885 TTAAAAATATATTTTATAATTTTTATACT
1 TTAAAAATA-ATTTTATAATTTTTATACT
* *
114435914 TCT--TAATAATTTTAATGATTTTTA-ACT
1 T-TAAAAATAATTTT-ATAATTTTTATACT
114435941 TTAAAAATAATTTTTTATAATTTT
1 TTAAAAATAA--TTTTATAATTTT
114435965 AAAAAATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
26 1 0.02
27 9 0.22
28 18 0.44
29 8 0.20
30 5 0.12
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (28 bp):
TTAAAAATAATTTTATAATTTTTATACT
Found at i:114437314 original size:23 final size:23
Alignment explanation
Indices: 114437288--114437338 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
114437278 CCGTCGACGA
* *
114437288 GACACTCAACGTCCCGACGATGT
1 GACACGCAACGTCCCGACGAGGT
** *
114437311 GACACGGGACGTCTCGACGAGGT
1 GACACGCAACGTCCCGACGAGGT
114437334 GACAC
1 GACAC
114437339 ACGACATCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.14
Consensus pattern (23 bp):
GACACGCAACGTCCCGACGAGGT
Found at i:114437926 original size:15 final size:15
Alignment explanation
Indices: 114437902--114437941 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
114437892 TTTTAAATAT
114437902 ATAATAAATTTTAAA
1 ATAATAAATTTTAAA
*
114437917 ATAATTAA-TTTAAA
1 ATAATAAATTTTAAA
*
114437931 AAAATAAATTT
1 ATAATAAATTT
114437942 ATATAGAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAATAAATTTTAAA
Found at i:114440127 original size:31 final size:31
Alignment explanation
Indices: 114440081--114440139 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
114440071 GTGGGGATAG
*
114440081 AATCGACCCACCCAACCCTACACACCAAGTA
1 AATCAACCCACCCAACCCTACACACCAAGTA
*
114440112 AATCAACCCATCCAACCCTACACACCAA
1 AATCAACCCACCCAACCCTACACACCAA
114440140 CTGGTACCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.46, G:0.03, T:0.10
Consensus pattern (31 bp):
AATCAACCCACCCAACCCTACACACCAAGTA
Found at i:114441169 original size:19 final size:19
Alignment explanation
Indices: 114441142--114441184 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
114441132 ACAACTAATC
*
114441142 GAAGTAGAA-GAAAAATGAA
1 GAAGAAGAAGGAAAAA-GAA
114441161 GAAGAAGAAGGAAAAAGAA
1 GAAGAAGAAGGAAAAAGAA
114441180 GAAGA
1 GAAGA
114441185 GAATTTTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (19 bp):
GAAGAAGAAGGAAAAAGAA
Found at i:114450087 original size:48 final size:48
Alignment explanation
Indices: 114450032--114450127 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
114450022 GACTATCAAA
*
114450032 TCAACTTGGAATTAAAGTATATTCTTCTACTTGTTAATAGATACTGAT
1 TCAACTTGGAATTAAAGTATATTCTTCTACTTGTCAATAGATACTGAT
* *
114450080 TCAACTTGGAATTAAAGTATGTTCTTTTACTTGTCAATAGATACTGAT
1 TCAACTTGGAATTAAAGTATATTCTTCTACTTGTCAATAGATACTGAT
114450128 CCACCGTCCC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (48 bp):
TCAACTTGGAATTAAAGTATATTCTTCTACTTGTCAATAGATACTGAT
Found at i:114451269 original size:20 final size:22
Alignment explanation
Indices: 114451244--114451286 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
114451234 GCTTTTTTAC
114451244 TTTAATTTT-TTTC-AATTTTT
1 TTTAATTTTATTTCTAATTTTT
114451264 TTTAATTTTAATTTCTAATTTTT
1 TTTAATTTT-ATTTCTAATTTTT
114451287 ATTTTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
22 4 0.20
23 7 0.35
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTAATTTTATTTCTAATTTTT
Found at i:114451434 original size:23 final size:26
Alignment explanation
Indices: 114451378--114451442 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
114451368 ATAACTCCAT
*
114451378 TATTTATATAAATAAATAATAAATATG
1 TATTTATATAATTAAATAATAAATA-G
*
114451405 TAATTATATAATTAAA-AA-AAATA-
1 TATTTATATAATTAAATAATAAATAG
114451428 TATTTATATATATTA
1 TATTTATATA-ATTA
114451443 TTATGTTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 9 0.26
24 4 0.12
25 5 0.15
26 2 0.06
27 14 0.41
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
TATTTATATAATTAAATAATAAATAG
Found at i:114452110 original size:28 final size:28
Alignment explanation
Indices: 114452079--114452165 Score: 72
Period size: 32 Copynumber: 3.0 Consensus size: 28
114452069 TTAAAAATAT
*
114452079 GAATTAAAATAAAATTAAAAACTTGAAA
1 GAATTAAAATAAAAATAAAAACTTGAAA
* *
114452107 GAATTAAATTAATTAAAAGTAAAAA-TT-AGA
1 GAATT-AA--AA-TAAAAATAAAAACTTGAAA
114452137 -AATTAAAATAAAAAAATAAAAACTTGAAA
1 GAATTAAAAT--AAAAATAAAAACTTGAAA
114452166 CAAAACAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 10 0.21
28 9 0.19
29 8 0.17
30 2 0.04
31 4 0.09
32 11 0.23
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (28 bp):
GAATTAAAATAAAAATAAAAACTTGAAA
Found at i:114452269 original size:21 final size:21
Alignment explanation
Indices: 114452244--114452292 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
114452234 TTCTCTTTCA
*
114452244 GATTTCGGATTTTGAA-TTTTG
1 GATTTCAGATTTT-AAGTTTTG
*
114452265 GATTTAAGATTTTAAGTTTTG
1 GATTTCAGATTTTAAGTTTTG
*
114452286 AATTTCA
1 GATTTCA
114452293 AGTTTTGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (21 bp):
GATTTCAGATTTTAAGTTTTG
Found at i:114452290 original size:14 final size:14
Alignment explanation
Indices: 114452273--114452312 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
114452263 TGGATTTAAG
114452273 ATTTTAAGTTTTGA
1 ATTTTAAGTTTTGA
*
114452287 ATTTCAAGTTTTGA
1 ATTTTAAGTTTTGA
* *
114452301 TTTTTTAGTTTT
1 ATTTTAAGTTTT
114452313 AGAGTTTTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (14 bp):
ATTTTAAGTTTTGA
Found at i:114453697 original size:11 final size:11
Alignment explanation
Indices: 114453683--114453712 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
114453673 TTAGCCCATC
114453683 ATTAATTAGAA
1 ATTAATTAGAA
114453694 ATTAATTAGAA
1 ATTAATTAGAA
*
114453705 ATCAATTA
1 ATTAATTA
114453713 CTTGGATGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (11 bp):
ATTAATTAGAA
Found at i:114464320 original size:6 final size:6
Alignment explanation
Indices: 114464309--114464366 Score: 64
Period size: 6 Copynumber: 9.5 Consensus size: 6
114464299 TTTGAGTCCC
* * *
114464309 TTTATT TTTATT TTTATT TTTATT TTTA-T TTAAAT TTTATT TTCTCTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT-TATT
114464357 CTTTATT TTT
1 -TTTATT TTT
114464367 GAAGACATAC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
5 4 0.09
6 32 0.73
7 6 0.14
8 2 0.05
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:114464332 original size:18 final size:18
Alignment explanation
Indices: 114464309--114464366 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
114464299 TTTGAGTCCC
114464309 TTTATTTTTATTTTTATT
1 TTTATTTTTATTTTTATT
* *
114464327 TTTATTTTTA-TTTAAAT
1 TTTATTTTTATTTTTATT
*
114464344 TTTATTTTCTCTTCTTTATT
1 TTTATTTT-TATT-TTTATT
114464364 TTT
1 TTT
114464367 GAAGACATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
17 13 0.41
18 11 0.34
19 1 0.03
20 7 0.22
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTATTTTTATTTTTATT
Found at i:114465372 original size:4 final size:4
Alignment explanation
Indices: 114465355--114465399 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
114465345 TTTTAAAAAA
*
114465355 ACAT ACAA ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
114465400 TAGGTAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.22
Consensus pattern (4 bp):
ACAT
Found at i:114472766 original size:21 final size:21
Alignment explanation
Indices: 114472740--114472781 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
114472730 CCTTTGAGTC
114472740 ATTTGATATTTCGTACACTAA
1 ATTTGATATTTCGTACACTAA
114472761 ATTTGATATTTCGTACACTAA
1 ATTTGATATTTCGTACACTAA
114472782 GTGTCATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (21 bp):
ATTTGATATTTCGTACACTAA
Found at i:114472807 original size:28 final size:28
Alignment explanation
Indices: 114472766--114472844 Score: 122
Period size: 28 Copynumber: 2.8 Consensus size: 28
114472756 ACTAAATTTG
*
114472766 ATATTTCGTACACTAAGTGTCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
* *
114472794 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
*
114472822 ATATTTCGTACACTGAGTGCCAT
1 ATATTTCGTACACTAAGTGCCAT
114472845 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (28 bp):
ATATTTCGTACACTAAGTGCCATTCTCA
Found at i:114476991 original size:20 final size:20
Alignment explanation
Indices: 114476966--114477003 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
114476956 GTTTATTCGC
*
114476966 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
114476986 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
114477004 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:114477542 original size:13 final size:13
Alignment explanation
Indices: 114477524--114477548 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114477514 CTTAGGGTTG
114477524 TTTTTCCTCTCTT
1 TTTTTCCTCTCTT
114477537 TTTTTCCTCTCT
1 TTTTTCCTCTCT
114477549 AGCCGAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTCCTCTCTT
Found at i:114478665 original size:28 final size:28
Alignment explanation
Indices: 114478633--114478701 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
114478623 GCGTAGATCA
114478633 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
114478661 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
114478689 CGATA-TACCCCTA
1 CGAAATTACCCCTA
114478702 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:114482527 original size:25 final size:24
Alignment explanation
Indices: 114482487--114482536 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
114482477 AAGTTGTAAA
114482487 TAAAAAAATCTCTAGA-AATTTTC
1 TAAAAAAATCTCTAGAGAATTTTC
*
114482510 TAAAATAATATCTTTAGAGAATTTTC
1 TAAAA-AA-ATCTCTAGAGAATTTTC
114482536 T
1 T
114482537 CTTTACAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 5 0.22
24 2 0.09
25 8 0.35
26 8 0.35
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAAAAAATCTCTAGAGAATTTTC
Found at i:114482793 original size:17 final size:16
Alignment explanation
Indices: 114482750--114482795 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
114482740 TAATCACTTT
114482750 AATATTAAATTAATAAA
1 AATATTAAATTAA-AAA
*
114482767 AATACT--ATTAAAATA
1 AATATTAAATTAAAA-A
114482782 AATATTAAATTAAA
1 AATATTAAATTAAA
114482796 CTTAGTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 2 0.08
15 11 0.46
17 11 0.46
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATTAAATTAAAAA
Found at i:114483531 original size:10 final size:10
Alignment explanation
Indices: 114483516--114483564 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
114483506 AATTTTAGCT
114483516 TTTATCTTTA
1 TTTATCTTTA
114483526 TTTATCTTTA
1 TTTATCTTTA
*
114483536 ATTATCTTTA
1 TTTATCTTTA
*
114483546 ATTAT-TTGTA
1 TTTATCTT-TA
114483556 TTTATCTTT
1 TTTATCTTT
114483565 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:114483734 original size:20 final size:20
Alignment explanation
Indices: 114483709--114483754 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
114483699 ATAAAAAATC
114483709 CATTTTCCTTACATTTATTT
1 CATTTTCCTTACATTTATTT
*
114483729 CATTTTCCTTATATTTATTT
1 CATTTTCCTTACATTTATTT
114483749 CATTTT
1 CATTTT
114483755 TCCCAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (20 bp):
CATTTTCCTTACATTTATTT
Found at i:114484812 original size:60 final size:59
Alignment explanation
Indices: 114484685--114484823 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 59
114484675 TTTAGTGTTA
* * *
114484685 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGT-ACAGAGTAT
* *
114484746 ACTGGGCCTAGCCCATATCAGTATCAATATGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATATGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
114484806 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
114484824 TAACACAGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 3 0.04
60 50 0.74
61 12 0.18
62 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:114484841 original size:20 final size:20
Alignment explanation
Indices: 114484816--114484855 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
114484806 ATTGGGCCTT
114484816 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
114484836 GCCCATTTTAATACAGTTGG
1 GCCCATATTAACACAGTTGG
114484856 CCTATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:114490171 original size:31 final size:32
Alignment explanation
Indices: 114490136--114490218 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 32
114490126 ACAATATTAA
*
114490136 AGACATTATCACATAATGCAAG-CAGTACTAC
1 AGACATTATCACATAAAGCAAGACAGTACTAC
*
114490167 AGACATTATCACATAAAGC-AGATAGTACTAC
1 AGACATTATCACATAAAGCAAGACAGTACTAC
*
114490198 AGACATTATTACATAAAGCAA
1 AGACATTATCACATAAAGCAA
114490219 TTGAGCATGA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
30 2 0.04
31 44 0.94
32 1 0.02
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23
Consensus pattern (32 bp):
AGACATTATCACATAAAGCAAGACAGTACTAC
Found at i:114501583 original size:23 final size:23
Alignment explanation
Indices: 114501545--114501592 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
114501535 TAAGTAAATA
114501545 TATATATATATATATTACAATTG
1 TATATATATATATATTACAATTG
* * *
114501568 TATATATGTATTTATTACACTTG
1 TATATATATATATATTACAATTG
114501591 TA
1 TA
114501593 CATTTTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (23 bp):
TATATATATATATATTACAATTG
Found at i:114502255 original size:34 final size:35
Alignment explanation
Indices: 114502198--114502268 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 35
114502188 AGGGAAGAAA
*
114502198 TATACTCAGAAAGAAAAAAAGGTGATTTATTCATT
1 TATACTCAAAAAGAAAAAAAGGTGATTTATTCATT
114502233 TATACTCAAAAAG-AAAAAAGGTGATTTATTCATT
1 TATACTCAAAAAGAAAAAAAGGTGATTTATTCATT
114502267 TA
1 TA
114502269 GTTCATGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 23 0.66
35 12 0.34
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.32
Consensus pattern (35 bp):
TATACTCAAAAAGAAAAAAAGGTGATTTATTCATT
Found at i:114509210 original size:7 final size:7
Alignment explanation
Indices: 114509198--114509231 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
114509188 CTTGAGACCT
114509198 TAAAAAA
1 TAAAAAA
114509205 T-AAAAA
1 TAAAAAA
114509211 T-AAAAA
1 TAAAAAA
114509217 TAAAAAA
1 TAAAAAA
114509224 TAAAAAA
1 TAAAAAA
114509231 T
1 T
114509232 CAAGGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAAAAA
Found at i:114509215 original size:5 final size:6
Alignment explanation
Indices: 114509200--114509229 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
114509190 TGAGACCTTA
114509200 AAAAAT AAAAAT AAAAAT AAAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA
114509230 ATCAAGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:114509216 original size:13 final size:12
Alignment explanation
Indices: 114509200--114509229 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
114509190 TGAGACCTTA
114509200 AAAAATAAAAAT
1 AAAAATAAAAAT
114509212 AAAAATAAAAAAT
1 AAAAAT-AAAAAT
114509225 AAAAA
1 AAAAA
114509230 ATCAAGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:114510444 original size:14 final size:14
Alignment explanation
Indices: 114510422--114510451 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
114510412 GTACAAACAT
*
114510422 AAACTAAATAAATA
1 AAACCAAATAAATA
114510436 AAACCAAATAAATA
1 AAACCAAATAAATA
114510450 AA
1 AA
114510452 CAGTTCATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCAAATAAATA
Found at i:114510545 original size:17 final size:16
Alignment explanation
Indices: 114510525--114510579 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
114510515 TTTTCAAAGG
114510525 CCCAAACTAAACCCAAA
1 CCCAAA-TAAACCCAAA
*
114510542 CCCAATATAAGCCCAAA
1 CCCAA-ATAAACCCAAA
*
114510559 -TCAAATAAA-CCAAGA
1 CCCAAATAAACCCAA-A
114510574 CCCAAA
1 CCCAAA
114510580 ATTTCATCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 4 0.13
15 5 0.16
16 7 0.23
17 14 0.45
18 1 0.03
ACGTcount: A:0.53, C:0.35, G:0.04, T:0.09
Consensus pattern (16 bp):
CCCAAATAAACCCAAA
Found at i:114512278 original size:27 final size:28
Alignment explanation
Indices: 114512240--114512380 Score: 168
Period size: 27 Copynumber: 5.2 Consensus size: 28
114512230 CAGCATGGCT
* *
114512240 ACCAGA-ACAGATA-ATGTGACAGAGTC
1 ACCAGATACAGATATATGTGGCAGAGCC
114512266 ACCAGATACAGATA-ATCGTGGCAGAGCC
1 ACCAGATACAGATATAT-GTGGCAGAGCC
*
114512294 ACCAGA-ATAGATATATGTGGCAGAGCC
1 ACCAGATACAGATATATGTGGCAGAGCC
* *
114512321 ACCAGAT-CAAATATTTGTGGCAGAGCC
1 ACCAGATACAGATATATGTGGCAGAGCC
* *
114512348 ACCAGAT-CAGATATTTGTGGCATAGCC
1 ACCAGATACAGATATATGTGGCAGAGCC
114512375 ACCAGA
1 ACCAGA
114512381 ACGCTTCCTC
Statistics
Matches: 103, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 17 0.17
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.18
Consensus pattern (28 bp):
ACCAGATACAGATATATGTGGCAGAGCC
Found at i:114514026 original size:26 final size:26
Alignment explanation
Indices: 114513990--114514073 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
114513980 CATGAAATTC
114513990 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
114514016 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114514042 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114514068 TTATCA
1 TTATCA
114514074 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114518048 original size:27 final size:28
Alignment explanation
Indices: 114518011--114518150 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
114518001 AGCATGGCTG
* *
114518011 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
114518037 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
114518065 CCAGA-ATAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
114518092 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
114518119 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
114518146 CCAGA
1 CCAGA
114518151 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:114519791 original size:26 final size:26
Alignment explanation
Indices: 114519755--114519838 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
114519745 CATGAAATTC
114519755 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
114519781 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114519807 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114519833 TTATCA
1 TTATCA
114519839 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114521501 original size:24 final size:23
Alignment explanation
Indices: 114521474--114521518 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
114521464 TTAGTTATAC
*
114521474 TTAATTATTGGTTTTGTTAATTTG
1 TTAATTATTAG-TTTGTTAATTTG
114521498 TTAATTATTAGTTTGTTAATT
1 TTAATTATTAGTTTGTTAATT
114521519 GGTATTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (23 bp):
TTAATTATTAGTTTGTTAATTTG
Found at i:114521529 original size:23 final size:23
Alignment explanation
Indices: 114521475--114521522 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
114521465 TAGTTATACT
* *
114521475 TAATTATTGGTTTTGTTAATTTGT
1 TAATTATTAG-TTTGTTAATTTGG
114521499 TAATTATTAGTTTGTTAA-TTGG
1 TAATTATTAGTTTGTTAATTTGG
114521521 TA
1 TA
114521523 TTGTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
23 8 0.36
24 9 0.41
ACGTcount: A:0.25, C:0.00, G:0.17, T:0.58
Consensus pattern (23 bp):
TAATTATTAGTTTGTTAATTTGG
Found at i:114522571 original size:88 final size:87
Alignment explanation
Indices: 114522457--114523192 Score: 437
Period size: 88 Copynumber: 8.3 Consensus size: 87
114522447 GAAGATGGCG
* * * *
114522457 AATCTTATCTTCCCGATGTAGTAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGATAG
* *
114522522 TAAGAGAGCAGGTTGAATATTGT
66 -AAGAGAGCAGATTGAAAATTGT
* ** * ** * * *
114522545 AGTCTTATCTTCCAAAGGTAGCAAGGAAGCAGACTGAAG--ATTGAAGATCTTATTTCCCTGAGA
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACT--AG-CCTTATCTCCCTGAGA
* * * * * * *
114522608 TAGCAGTGGAGTAGATCGAATATGGCG
63 TAGAAG-AGAGCAGATTGAAAATTG-T
* * * * * * *
114522635 AATCTTATCTTCCCGAGGTATCAGGGGAGCAGA-TTTAGCCACCAGCCTTATCTCTCTGAGGTGG
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGATAG
* *
114522699 CAAGAGAGCAGGTTGAAGATTGT
66 -AAGAGAGCAGATTGAAAATTGT
** * * * ** * *
114522722 AATCTTATCTTCTTGAGGTAGTAAGGAAGCAAACTGAAG--ATTGAAGATCTTATCTCCCTGAGA
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACT--AG-CCTTATCTCCCTGAGA
* * * * ** *
114522785 TAGCAGTGGGATAGATAAAAAATGGT
63 TAGAAGAGAG-CAGATTGAAAATTGT
* * ** * * *
114522811 GAATCTTATCTTCCCGAGGTAGC-AGGGAGCAGATTTTGGTTACCATCCTTATCTCTCTGAGATA
1 -AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGATA
* *
114522875 GCAAGAGAGTAGGTTGAAAATTGT
65 G-AAGAGAGCAGATTGAAAATTGT
* * * ** **** * *
114522899 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGTTTTTAGATCTTATCTCCCTAAG-TA
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAG-CCTTATCTCCCTGAGATA
* * * * *
114522963 GTAGTGGAGCAGATCG-AAGTTGGCG
65 GAAG-AGAGCAGATTGAAAATT-G-T
* * *
114522988 AATCTTATCTTCTCGAGGTAGCAGGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGATAG
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGATAG
*
114523053 CAAGAGAGCAGGTTGAAAATTGT
66 -AAGAGAGCAGATTGAAAATTGT
* * * * * * *
114523076 ATTCTTATTTTCCCGAGGTAGTAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAG
1 AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGATAG
* *
114523141 AAAAGGAGCAGACT-AAAGATTGT
66 AAGA-GAGCAGATTGAAA-ATTGT
* **
114523164 AGTCTTATCTTCCTAAGGTAGCAAGGAAG
1 AATCTTATCTTCCCGAGGTAGCAAGGAAG
114523193 TAGACTAAAG
Statistics
Matches: 476, Mismatches: 145, Indels: 54
0.71 0.21 0.08
Matches are distributed among these distances:
86 3 0.01
87 58 0.12
88 228 0.48
89 133 0.28
90 52 0.11
91 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (87 bp):
AATCTTATCTTCCCGAGGTAGCAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGATAG
AAGAGAGCAGATTGAAAATTGT
Found at i:114522711 original size:177 final size:178
Alignment explanation
Indices: 114522411--114523096 Score: 869
Period size: 177 Copynumber: 3.9 Consensus size: 178
114522401 GTGAATTCAC
* * * * ** * * *
114522411 AGATCTTATCTCCATAAGGTAGCAATAAAGTAGAACGAAGATGGCGAATCTTATCTTCCCGATGT
1 AGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAATATGGCGAATCTTATCTTCCCGAGGT
* * * * * *
114522476 AGTAAGGAAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAATA
66 AGCAGGGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAAA
**
114522541 TTGTAGTCTTATCTTCCAAAGGTAGCAAGGAAGCAGACTGAAGATTGA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
*
114522589 AGATCTTATTTCCCTGAGATAGCAGTGGAGTAGATCGAATATGGCGAATCTTATCTTCCCGAGGT
1 AGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAATATGGCGAATCTTATCTTCCCGAGGT
* * * * *
114522654 ATCAGGGGAGCAGA-TTTAGCCACCAGCCTTATCTCTCTGAGGTGGCAAGAGAGCAGGTTGAAGA
66 AGCAGGGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAAA
* * * *
114522718 TTGTAATCTTATCTTCTTGAGGTAGTAAGGAAGCAAACTGAAGATTGA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
** * *
114522766 AGATCTTATCTCCCTGAGATAGCAGTGG-GATAGATAAAAAATGGTGAATCTTATCTTCCCGAGG
1 AGATCTTATCTCCCTGAGATAGCAGTGGAG-TAGATCGAATATGGCGAATCTTATCTTCCCGAGG
* ** * *
114522830 TAGCAGGG-AGCAGATTTTGGTTACCATCCTTATCTCTCTGAGATAGCAAGAGAGTAGGTTGAAA
65 TAGCAGGGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAA
* * **
114522894 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGTTTTT
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * *
114522943 AGATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGT-TGGCGAATCTTATCTTCTCGAGG
1 AGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAA-TATGGCGAATCTTATCTTCCCGAGG
* * *
114523006 TAGCAGGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGATAGCAAGAGAGCAGGTTGAAA
65 TAGCAGGGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAA
* * *
114523071 ATTGTATTCTTATTTTCCCGAGGTAG
130 ATTGTAGTCTTATCTTCCTGAGGTAG
114523097 TAGGGGAGCA
Statistics
Matches: 438, Mismatches: 65, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
176 50 0.11
177 323 0.74
178 65 0.15
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (178 bp):
AGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAATATGGCGAATCTTATCTTCCCGAGGT
AGCAGGGAAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGAAAA
TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:114523171 original size:44 final size:45
Alignment explanation
Indices: 114523123--114523229 Score: 137
Period size: 44 Copynumber: 2.4 Consensus size: 45
114523113 AGCCACCAGC
114523123 CTTATCTCCCTGAGGTAGAAAAGG-AGCAGACTAAAGATTGTAG-T
1 CTTATCTCCCTGAGGTAG-AAAGGAAGCAGACTAAAGATTGTAGAT
* * * * *
114523167 CTTATCTTCCTAAGGTAGCAAGGAAGTAGACTAAAGTTTGTAGAT
1 CTTATCTCCCTGAGGTAGAAAGGAAGCAGACTAAAGATTGTAGAT
*
114523212 CTTATCTCCATGAGGTAG
1 CTTATCTCCCTGAGGTAG
114523230 CAATAGAGCA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 4 0.08
44 33 0.62
45 16 0.30
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAGGTAGAAAGGAAGCAGACTAAAGATTGTAGAT
Found at i:114523219 original size:354 final size:354
Alignment explanation
Indices: 114522503--114523186 Score: 831
Period size: 354 Copynumber: 1.9 Consensus size: 354
114522493 TAGCCACTAG
* *
114522503 CCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAATATTGTAGTCTTATCTTCCAAAGGTAGCA
1 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATTGTAGTCTTATCTTCCAAAGGTAGCA
* * * *
114522568 AGGAAGCAGACTGAAGATTGAAGATCTTATTTCCCTGAGATAGCAGTGGAGTAGATCGAATATGG
66 AGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCGAATATGG
* * * * * *
114522633 CGAATCTTATCTTCCCGAGGTATCAGGGGAGCAGATTTAGCCACCAGCCTTATCTCTCTGAGGTG
131 CGAATCTTATCTTCCCGAGGTAGCAGGGAAGCAGATTTAGCCACCAGCCTTATCTCCCTAAGATA
* ** *
114522698 GCAAGAGAGCAGGTTGAAGATTGTAATCTTATCTTCTTGAGGTAGTAAGGAAGCAAACTGAAGAT
196 GCAAGAGAGCAGGTTGAAAATTGTAATCTTATCTTCCCGAGGTAGTAAGGAAGCAAACTGAAGAC
** * * ** * *
114522763 TGAAGATCTTATCTCCCTGAGATAGCAGTGGGATAGATAAAAAATGGTGAATCTTATCTTCCCGA
261 ACAAGACCTTATCTCCCTGAGATAGAAAAGGGACAGATAAAAAATGGTGAATCTTATCTTCCCAA
* *
114522828 GGTAGCAGGGAGCAGATTTTGGTTACCAT
326 GGTAGCAGGGAGCAAAGTTTGGTTACCAT
* * **
114522857 CCTTATCTCTCTGAGATAGCAAGAGAGTAGGTTGAAAATTGTAGTCTTATCTTCCTGAGGTAGCA
1 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATTGTAGTCTTATCTTCCAAAGGTAGCA
* ** *
114522922 AGGAAGCAGACTAAAGTTTTTAGATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGT-TG
66 AGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCGAA-TATG
* *
114522985 GCGAATCTTATCTTCTCGAGGTAGCAGGGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGA
130 GCGAATCTTATCTTCCCGAGGTAGCAGGGAAGCAGA-TTTAGCCACCAGCCTTATCTCCCTAAGA
* * * * * * **
114523050 TAGCAAGAGAGCAGGTTGAAAATTGTATTCTTATTTTCCCGAGGTAGTAGGGGAGCAGATTTTAG
194 TAGCAAGAGAGCAGGTTGAAAATTGTAATCTTATCTTCCCGAGGTAGTAAGGAAGCAAACTGAAG
* * * * * *
114523115 CCACCAG-CCTTATCTCCCTGAGGTAGAAAA-GGAGCAGACT-AAAGATTGT-AGTCTTATCTTC
259 ACACAAGACCTTATCTCCCTGAGATAGAAAAGGGA-CAGA-TAAAAAATGGTGAATCTTATCTTC
*
114523176 CTAAGGTAGCA
322 CCAAGGTAGCA
114523187 AGGAAGTAGA
Statistics
Matches: 277, Mismatches: 49, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
352 23 0.08
353 81 0.29
354 173 0.62
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (354 bp):
CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATTGTAGTCTTATCTTCCAAAGGTAGCA
AGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGATAGCAGTGGAGCAGATCGAATATGG
CGAATCTTATCTTCCCGAGGTAGCAGGGAAGCAGATTTAGCCACCAGCCTTATCTCCCTAAGATA
GCAAGAGAGCAGGTTGAAAATTGTAATCTTATCTTCCCGAGGTAGTAAGGAAGCAAACTGAAGAC
ACAAGACCTTATCTCCCTGAGATAGAAAAGGGACAGATAAAAAATGGTGAATCTTATCTTCCCAA
GGTAGCAGGGAGCAAAGTTTGGTTACCAT
Found at i:114523230 original size:45 final size:42
Alignment explanation
Indices: 114523123--114523241 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 42
114523113 AGCCACCAGC
*
114523123 CTTATCTCCCTGAGGTAGAAAAGGAGCAGACTAAAGATTGTAGT
1 CTTATCT-CCTGAGGTAG-CAAGGAGCAGACTAAAGATTGTAGT
* * *
114523167 CTTATCTTCCTAAGGTAGCAAGGAAGTAGACTAAAGTTTGTAGAT
1 CTTATC-TCCTGAGGTAGCAAGG-AGCAGACTAAAGATTGTAG-T
*
114523212 CTTATCTCCATGAGGTAGCAATAGAGCAGA
1 CTTATCTCC-TGAGGTAGCAA-GGAGCAGA
114523242 TCGAAGATGG
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
43 4 0.06
44 35 0.56
45 23 0.37
46 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (42 bp):
CTTATCTCCTGAGGTAGCAAGGAGCAGACTAAAGATTGTAGT
Found at i:114523259 original size:45 final size:44
Alignment explanation
Indices: 114523210--114523464 Score: 213
Period size: 45 Copynumber: 5.9 Consensus size: 44
114523200 AAGTTTGTAG
* *
114523210 ATCTTATCTCCATGAGGTAGCAATAGAGCAGATCGAAGATGGCGA
1 ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAGATGG-GA
* * *
114523255 ATCTTATCTCCAT---G-AG---TGGAGAAGATTGAA-ATTTGTA
1 ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAGA-TGGGA
* *
114523292 GATTTTATCTCCATGCGGTAGCAATGGAGCAGATTGAAGATGGCGA
1 -ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAGATGG-GA
* * * * *
114523338 ATCTTATCTCCATGA-GTTGCAGTGGAGCAGATTGAAGTTTGTA
1 ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAGATGGGA
* * * * *
114523381 GATCTTATCTCCATGAGGTAGTAATGGAGTAGATCGAATATGGAAA
1 -ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAGATGG-GA
* * *
114523427 ATCTTATCTCCATGAGGTGGCAATAGCGCAGATTGAAG
1 ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAG
114523465 CCACTAGCCT
Statistics
Matches: 164, Mismatches: 32, Indels: 28
0.73 0.14 0.12
Matches are distributed among these distances:
37 2 0.01
38 25 0.15
41 3 0.02
42 3 0.02
43 1 0.01
44 37 0.23
45 90 0.55
46 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCATGAGGTAGCAATGGAGCAGATTGAAGATGGGA
Found at i:114523401 original size:89 final size:87
Alignment explanation
Indices: 114523200--114523442 Score: 341
Period size: 89 Copynumber: 2.8 Consensus size: 87
114523190 AAGTAGACTA
*
114523200 AAGTTTGTAGATCTTATCTCCATGAGGTAGCAATAGAGCAGATCGAAGATGGCGAATCTTATCTC
1 AAGTTTGTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGATGGCGAATCTTATCTC
114523265 C---A-TGAGTGGAGAAGATTG
66 CATGAGTGAGTGGAGAAGATTG
* * * *
114523283 AAATTTGTAGATTTTATCTCCATGCGGTAGCAATGGAGCAGATTGAAGATGGCGAATCTTATCTC
1 AAGTTTGTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGATGGCGAATCTTATCTC
*
114523348 CATGAGTTGCAGTGGAGCAGATTG
66 CATGAG-TG-AGTGGAGAAGATTG
* * * **
114523372 AAGTTTGTAGATCTTATCTCCATGAGGTAGTAATGGAGTAGATCGAATATGGAAAATCTTATCTC
1 AAGTTTGTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGATGGCGAATCTTATCTC
114523437 CATGAG
66 CATGAG
114523443 GTGGCAATAG
Statistics
Matches: 139, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
83 61 0.44
86 1 0.01
88 2 0.01
89 75 0.54
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (87 bp):
AAGTTTGTAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGATGGCGAATCTTATCTC
CATGAGTGAGTGGAGAAGATTG
Found at i:114529759 original size:19 final size:20
Alignment explanation
Indices: 114529731--114529768 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
114529721 AAACTTGAAT
*
114529731 TTAAATTATTTT-TATTATA
1 TTAAAATATTTTATATTATA
114529750 TTAAAATATTTTATATTAT
1 TTAAAATATTTTATATTAT
114529769 CGAAATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAAAATATTTTATATTATA
Found at i:114534865 original size:128 final size:132
Alignment explanation
Indices: 114534551--114534968 Score: 390
Period size: 130 Copynumber: 3.2 Consensus size: 132
114534541 AAACATTGAA
* * * **
114534551 TATCATCTTCGTTTTTAAGG-TTTTTAATAA-ACATGAATGTAAA-CCT-AAAGGAATATTCGAT
1 TATCACCTTCGTTTTAAAGGATTTTTAA-AAGACATGAGTG-AAATTTTGAAAGG-ATATTCGAT
* * * * ** * * ** * *
114534612 TGTTTTAGACAAACGAGGAATCACAACCCAACACGATAAGGCATGATTCC-TGAATTGTCAAATA
63 TATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATA
* *
114534676 CCGAG
128 TCGCG
* * * * *
114534681 TGTTACCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTGAAAGGATATTTGATTAT
1 TATCACCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAAGGATATTCGATTAT
**
114534746 TTTAAAC-AA-TTGAAATTGCAACCCAACACGTTAGGGCACAATTCCACTG-ATTGCCAAATATC
66 TTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACAATTCCAC-GAATTGCCAAATATC
114534808 GCG
130 GCG
*
114534811 TATCACCTTCG-TTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTTG-AAGTGATATTCGATTA
1 TATCACCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAAG-GATATTCGATTA
* * * *
114534873 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATC
65 TTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATC
*
114534938 GCA
130 GCG
* * * *
114534941 CATCGCCTCCGTTTTAAAGAATTTTTAA
1 TATCACCTTCGTTTTAAAGGATTTTTAA
114534969 TAATTGTGAA
Statistics
Matches: 233, Mismatches: 43, Indels: 22
0.78 0.14 0.07
Matches are distributed among these distances:
127 3 0.01
128 41 0.18
129 38 0.16
130 102 0.44
131 38 0.16
132 11 0.05
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (132 bp):
TATCACCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAAGGATATTCGATTAT
TTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCG
CG
Found at i:114535335 original size:2 final size:2
Alignment explanation
Indices: 114535328--114535352 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114535318 AATAAGCTAG
114535328 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
114535353 GGTTGACAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114537837 original size:44 final size:44
Alignment explanation
Indices: 114537775--114537911 Score: 193
Period size: 44 Copynumber: 3.1 Consensus size: 44
114537765 CAGGAACACC
* * * *
114537775 AATCTGTTATTTTTGATCTGCTCTCTGCCAAAACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
* * *
114537819 AATCTGCTGTCTTCGATCTGCCCTCTGACAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
* *
114537863 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
114537907 AATCT
1 AATCT
114537912 ACAGGATTTG
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 81 1.00
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
Found at i:114549750 original size:130 final size:128
Alignment explanation
Indices: 114549501--114549800 Score: 307
Period size: 130 Copynumber: 2.3 Consensus size: 128
114549491 TTATTTTGGG
* * *
114549501 CAAACGAAAAAGCGCAACCCAACACGATAGGGCTCGATTCTCAAATCACCAAACATCAAACATCG
1 CAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAACATCAAACATCG
* ** * * * *
114549566 CCTTGATTTTGAAAGATTTTAGAAAATGTGAATAAAGTTCCGAAGGGATCTTCAATTGTTTCGGA
66 CCTTCATTTTGAAAGATTTTAGAAAACATGAATAAA--TCCAAAGGAATATTCAATTGTTTCAGA
* * * * **
114549631 CCAATGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTTAAATCGCCAAACATTGAACATCG
1 CAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAACATCAAACATCG
* * * *
114549696 TCTTCATTTTTAAGGATTTTA-ATAAACATGAATGTAAA-CCTAAAGGAATATTCAATTGTTTTA
66 CCTTCATTTTGAAAGATTTTAGA-AAACATGAA--TAAATCC-AAAGGAATATTCAATTGTTTCA
114549759 GA
127 GA
** * * *
114549761 CAAACGAGGAATCACAACCCAGCACGATAAGGCATGATTC
1 CAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTC
114549801 CCGAATTGTC
Statistics
Matches: 139, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
129 3 0.02
130 132 0.95
132 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.24
Consensus pattern (128 bp):
CAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAACATCAAACATCG
CCTTCATTTTGAAAGATTTTAGAAAACATGAATAAATCCAAAGGAATATTCAATTGTTTCAGA
Found at i:114549930 original size:129 final size:130
Alignment explanation
Indices: 114549743--114550073 Score: 346
Period size: 130 Copynumber: 2.6 Consensus size: 130
114549733 ACCTAAAGGA
* * * * * ** * * * *
114549743 ATATTCAATTGTTTTAGACAAACGAGGAATCACAACCCAGCACGATAAGGCATGATTCC-CGAAT
1 ATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAAT
* * * * *
114549807 TGTCAAACACCGAGTGTTACCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTGAAA
66 TGCCAAACACCGAGTATCACCTTCG-TTTAAAGGA-TTTTAAAAGACATGAGTGAAATTTTG-AA
114549872 G-G
128 GTG
* * *
114549874 ATATTTGATTATTTTAAAC-AA-TCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACTAAT
1 ATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAAT
* * ** * *
114549937 TGCCAAATATCTTGTATCGCCTTCGTTTAAGGGATTTTAAAAGACATGAGTGAAATTTTGAAGTG
66 TGCCAAACACCGAGTATCACCTTCGTTTAAAGGATTTTAAAAGACATGAGTGAAATTTTGAAGTG
* * * *
114550002 ATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGACT
1 ATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAAT
114550067 TGCCAAA
66 TGCCAAA
114550074 TATTGCACAT
Statistics
Matches: 164, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
127 3 0.02
128 41 0.25
129 37 0.23
130 68 0.41
131 15 0.09
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (130 bp):
ATATTCGATTATTTTAAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAAT
TGCCAAACACCGAGTATCACCTTCGTTTAAAGGATTTTAAAAGACATGAGTGAAATTTTGAAGTG
Found at i:114549997 original size:128 final size:132
Alignment explanation
Indices: 114549826--114550108 Score: 373
Period size: 130 Copynumber: 2.2 Consensus size: 132
114549816 CCGAGTGTTA
* * *
114549826 CCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTGAAAG-GATATTTGATTATTTTA
1 CCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTG-AAGTGATATTCGATTATTTTA
* *
114549890 AAC-AA-TCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACTAATTGCCAAATATCTTGTA
65 AACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCTTGTA
114549953 TCG
130 TCG
* *
114549956 CCTTCG-TTTAAGGGA-TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTGA
1 CCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTAA
* * * *
114550019 GCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGACTTGCCAAATA--TTGCAC
66 ACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCTTG--T
114550082 ATCG
129 ATCG
* *
114550086 CCTCCGTTTTAAAGAATTTTTAA
1 CCTTCGTTTTAAAGGATTTTTAA
114550109 TAATTGTGAA
Statistics
Matches: 132, Mismatches: 14, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
127 3 0.02
128 44 0.33
129 10 0.08
130 62 0.47
131 7 0.05
132 6 0.05
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (132 bp):
CCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTAA
ACAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCTTGTAT
CG
Found at i:114553498 original size:15 final size:16
Alignment explanation
Indices: 114553478--114553510 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
114553468 ATATATTTTT
114553478 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
114553493 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
114553510 T
1 T
114553511 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:114553596 original size:22 final size:22
Alignment explanation
Indices: 114553557--114553615 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
114553547 GTTTTAAGAA
*
114553557 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
114553578 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
114553600 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
114553616 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:114553632 original size:26 final size:24
Alignment explanation
Indices: 114553586--114553645 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
114553576 ATTTGTTTTA
*
114553586 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
114553610 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
114553636 TTTTTTATTT
1 ATATTTATTT
114553646 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:114555495 original size:51 final size:51
Alignment explanation
Indices: 114555417--114555528 Score: 161
Period size: 51 Copynumber: 2.2 Consensus size: 51
114555407 TATCCAGATA
*
114555417 AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAATAATTATTCCGAATG
1 AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAATAATAATTCCGAATG
* * ** *
114555468 AAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAATTCCGGATG
1 AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAATAATAATTCCGAATG
*
114555519 AAGTATGAAG
1 AAATATGAAG
114555529 TAAGTTTGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.27
Consensus pattern (51 bp):
AAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAATAATAATTCCGAATG
Found at i:114558398 original size:11 final size:11
Alignment explanation
Indices: 114558382--114558413 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
114558372 TATATGATGC
114558382 GAAAATTAATT
1 GAAAATTAATT
114558393 GAAAATTAATT
1 GAAAATTAATT
114558404 GAAAATTAAT
1 GAAAATTAAT
114558414 ACAAATGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.34
Consensus pattern (11 bp):
GAAAATTAATT
Found at i:114562048 original size:26 final size:26
Alignment explanation
Indices: 114562015--114562123 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
114562005 TGATACAAAT
114562015 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
114562041 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
114562067 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
114562093 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
114562119 TGATA
1 TGATA
114562124 GGAATTTCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:114565269 original size:27 final size:27
Alignment explanation
Indices: 114565193--114565282 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
114565183 TTTAGTTTAC
* *
114565193 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
114565220 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
114565247 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
114565274 TAAAATTAC
1 TAAAATTAC
114565283 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:114565292 original size:54 final size:54
Alignment explanation
Indices: 114565193--114565299 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
114565183 TTTAGTTTAC
* * *
114565193 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
114565247 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
114565300 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:114565307 original size:27 final size:27
Alignment explanation
Indices: 114565277--114565337 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
114565267 CGACTTGTAA
114565277 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
* **** *
114565304 AATTATCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
114565331 AATTACC
1 AATTACC
114565338 GTTTTACCCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:114565335 original size:81 final size:81
Alignment explanation
Indices: 114565234--114565536 Score: 225
Period size: 81 Copynumber: 3.7 Consensus size: 81
114565224 AATACTGAAA
** * *
114565234 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCTTCGATTTGTAAAATTACCAAATTACCCCCGATT
114565299 TACAGAATTATCGTTT
66 TACAGAATTATCGTTT
* * * *** * ** * * *** * *
114565315 TACCCCCGATTTACATAATTACCGTTTTACC-CCTGATTTACATAATTATCGTTTTACCCTCGAC
1 TACCCTCGATTTACAAAATTACTGAAATACCTTC-GATTTGTAAAATTACCAAATTACCCCCGAT
114565379 TTACAGAATTATCGTTT
65 TTACAGAATTATCGTTT
* * *** * * * * ** **
114565396 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCTTCGATTTGTAAAATTACCAAATTACCCCCGATT
*
114565461 TACAGAATTA-CTATTT
66 TACAGAATTATC-GTTT
* * *
114565477 TACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCC
1 TACCCTCGATTTACAAAATTACTGAAATA-CCTTCGATTTGTAAAATTACCAAATTACCCC
114565537 TAGTTTGTAA
Statistics
Matches: 171, Mismatches: 47, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
80 2 0.01
81 164 0.96
82 5 0.03
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGAAATACCTTCGATTTGTAAAATTACCAAATTACCCCCGATT
TACAGAATTATCGTTT
Found at i:114565340 original size:27 final size:27
Alignment explanation
Indices: 114565288--114565498 Score: 262
Period size: 27 Copynumber: 7.8 Consensus size: 27
114565278 ATTACCAAAG
* *
114565288 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
114565315 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
114565342 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
114565369 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
114565396 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
114565423 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
114565450 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
114565477 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
114565499 TAAAATACCC
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 165 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:114565507 original size:27 final size:27
Alignment explanation
Indices: 114565396--114565700 Score: 113
Period size: 27 Copynumber: 11.2 Consensus size: 27
114565386 ATTATCGTTT
* ***
114565396 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
114565423 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
114565450 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
114565477 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
114565504 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
114565531 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * *** *
114565558 TACCCTTGGTTTGTGAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
114565585 TACCGTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
114565612 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
114565639 TACCCTTGACTTT-CTAAAAATT-GTAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
114565668 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
114565695 TACCCT
1 TACCCT
114565701 TGGTTTGTAG
Statistics
Matches: 227, Mismatches: 36, Indels: 30
0.77 0.12 0.10
Matches are distributed among these distances:
26 3 0.01
27 198 0.87
28 8 0.04
29 18 0.08
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:114565535 original size:54 final size:54
Alignment explanation
Indices: 114565477--114565616 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
114565467 ATTACTATTT
* **
114565477 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * *
114565531 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCAAAA
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
* *
114565585 TACCGTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACTAAAATACCC
114565617 CTGATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:114565640 original size:81 final size:81
Alignment explanation
Indices: 114565492--114565646 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
114565482 TCGATTTACA
* * * *
114565492 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAAA
114565557 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
114565573 AAATTACCAAAATACCGTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTATCA
114565635 GAAATACCCTTG
64 -AAATACCCTTG
114565647 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAAA
ATACCCTTGGTTTGTG
Found at i:114565703 original size:27 final size:27
Alignment explanation
Indices: 114565450--114565706 Score: 135
Period size: 27 Copynumber: 9.4 Consensus size: 27
114565440 ATTACTATTT
* * ***
114565450 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
114565477 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* ** *
114565504 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * **
114565531 TACCCCTAGTTTGTAAAATTA-TCAAAA
1 TACCCTTGGTTTACAAAATTACT-AAAA
*** *
114565558 TACCCTTGGTTTGTGAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *** ** *
114565585 TACCGTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
114565612 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
* *
114565639 TACCCTTGACTTT-CTAAAAATT-GTAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
114565668 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
114565695 TACCCTTGGTTT
1 TACCCTTGGTTT
114565707 GTAGATTTAC
Statistics
Matches: 183, Mismatches: 38, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
26 1 0.01
27 157 0.86
28 7 0.04
29 18 0.10
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:114565824 original size:27 final size:27
Alignment explanation
Indices: 114565747--114565824 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
114565737 AAATGACTAA
*
114565747 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
114565774 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
114565801 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
114565825 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:114567053 original size:9 final size:9
Alignment explanation
Indices: 114567041--114567097 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
114567031 TTTGATAAAC
114567041 ATGATATGT
1 ATGATATGT
*
114567050 ATGATATGCAC
1 ATGATATG--T
*
114567061 ATGACATGT
1 ATGATATGT
*
114567070 ATGATATGCAC
1 ATGATATG--T
114567081 ATGATATGT
1 ATGATATGT
114567090 ATGATATG
1 ATGATATG
114567098 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:114567064 original size:20 final size:20
Alignment explanation
Indices: 114567039--114567109 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
114567029 ATTTTGATAA
114567039 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
114567059 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
114567079 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
114567099 ACATGAGATGT
1 ACATGATATGT
114567110 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:114567086 original size:11 final size:11
Alignment explanation
Indices: 114567050--114567104 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
114567040 CATGATATGT
114567050 ATGATATGCAC
1 ATGATATGCAC
* *
114567061 ATGACATG--T
1 ATGATATGCAC
114567070 ATGATATGCAC
1 ATGATATGCAC
*
114567081 ATGATATG--T
1 ATGATATGCAC
114567090 ATGATATGCAC
1 ATGATATGCAC
114567101 ATGA
1 ATGA
114567105 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:114567186 original size:23 final size:23
Alignment explanation
Indices: 114567156--114567298 Score: 241
Period size: 23 Copynumber: 6.1 Consensus size: 23
114567146 AGGAAGTGCA
114567156 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
114567179 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
114567203 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
114567226 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
114567249 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
114567272 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
114567296 AAA
1 AAA
114567299 AGAGGCTAGG
Statistics
Matches: 113, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
23 69 0.61
24 44 0.39
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:114567223 original size:47 final size:47
Alignment explanation
Indices: 114567154--114567319 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
114567144 GGAGGAAGTG
114567154 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
114567201 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
114567248 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* *
114567295 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
114567320 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
46 23 0.21
47 66 0.61
48 9 0.08
49 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:114567269 original size:70 final size:70
Alignment explanation
Indices: 114567156--114567298 Score: 259
Period size: 70 Copynumber: 2.0 Consensus size: 70
114567146 AGGAAGTGCA
*
114567156 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
114567221 TTATT
66 TTATT
* *
114567226 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAG
1 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
114567291 TTATT
66 TTATT
114567296 AAA
1 AAA
114567299 AGAGGCTAGG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (70 bp):
AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATT
Found at i:114567545 original size:30 final size:31
Alignment explanation
Indices: 114567511--114567573 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
114567501 CATTTACAGT
114567511 AAAGGCTTCGGCCCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
114567541 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
114567572 AA
1 AA
114567574 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:114570307 original size:54 final size:54
Alignment explanation
Indices: 114570243--114570366 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
114570233 AATACTTTAG
* *
114570243 TTTACTAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGA
1 TTTA-TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATAC-CAAAGTACCCTCGA
* * * *
114570298 TTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCTCGA
1 TTTATAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAGTACCCTCGA
*
114570352 TTTATATAATTACCG
1 TTTATAAAATTACCG
114570367 TTTTACCCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
53 8 0.14
54 47 0.81
55 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAGTACCCTCGA
Found at i:114570324 original size:27 final size:27
Alignment explanation
Indices: 114570248--114570364 Score: 130
Period size: 27 Copynumber: 4.3 Consensus size: 27
114570238 TTTAGTTTAC
* *
114570248 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
*
114570275 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
114570302 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
114570329 TAAAATTAC-CAAAGTACCCTCGATTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
*
114570356 TATAATTAC
1 TAAAATTAC
114570365 CGTTTTACCC
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.04
27 73 0.95
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:114570373 original size:27 final size:27
Alignment explanation
Indices: 114570343--114570526 Score: 235
Period size: 27 Copynumber: 6.8 Consensus size: 27
114570333 ATTACCAAAG
* *
114570343 TACCCTCGATTTATATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
114570370 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
114570397 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
114570424 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
114570451 TACCTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
114570478 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
114570505 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
114570527 TAAAATACCT
Statistics
Matches: 141, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:114570406 original size:81 final size:81
Alignment explanation
Indices: 114570316--114570526 Score: 192
Period size: 81 Copynumber: 2.6 Consensus size: 81
114570306 ATTACTGAAA
* ** * * *
114570316 TACCTTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATATAATTACCGTTTTACCC-CTGAT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACAGTTTTACCCTC-GAT
*
114570380 TTACATAATTATCGTTT
65 TTACAGAATTATCGTTT
* **** *
114570397 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTTTACCTTCGATT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACAGTTTTACCCTCGATT
*
114570462 TACAGAATTA-CTATTT
66 TACAGAATTATC-GTTT
* * * * *** *
114570478 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTAC
114570527 TAAAATACCT
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.01
81 107 0.98
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAGAATTACAGTTTTACCCTCGATT
TACAGAATTATCGTTT
Found at i:114570535 original size:27 final size:27
Alignment explanation
Indices: 114570424--114570725 Score: 107
Period size: 27 Copynumber: 11.1 Consensus size: 27
114570414 ATTACCGTTT
* ***
114570424 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
114570451 TACCTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
114570478 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
114570505 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
114570532 TACCTTAG-TTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* **
114570558 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * *** **
114570585 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
114570612 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
114570639 TACCC-CTAATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
114570666 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
114570695 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
114570722 TACC
1 TACC
114570726 TTGGTTTGTA
Statistics
Matches: 223, Mismatches: 37, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
26 21 0.09
27 175 0.78
28 8 0.04
29 19 0.09
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:114570614 original size:54 final size:53
Alignment explanation
Indices: 114570505--114570643 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 53
114570495 ATTACTATTT
* **
114570505 TACCCTCGATTTACAAAATTACTAAAATA-CCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTAC-AAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
114570558 TACCC-CTAGTTTGTAAAATTATCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTA-CAAAATACCCTTAGTTTGTAAAATTACCAAAA
114570612 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTA-CAAAATACCC
114570644 CTAATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.01
53 21 0.29
54 50 0.68
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:114570666 original size:54 final size:54
Alignment explanation
Indices: 114570505--114570671 Score: 137
Period size: 54 Copynumber: 3.1 Consensus size: 54
114570495 ATTACTATTT
* ** * * *
114570505 TACCCTCGATTTACAAAATTACTAAAATA-CCTTAGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTG-ACAAATTA-CAGAAA
* * * ** ** *
114570558 TACCC-CTAGTTTGTAAAATTATCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTGACAAATTACAGAAA
114570612 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTT-ACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGACAAA-TTACAGAAA
114570666 TACCCT
1 TACCCT
114570672 TGACTTTCTA
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 25 0.27
54 64 0.70
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGACAAATTACAGAAA
Found at i:114570729 original size:26 final size:27
Alignment explanation
Indices: 114570682--114570732 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
114570672 TGACTTTCTA
114570682 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
114570709 AAAATTACT-GAAATACC-TTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
114570733 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:114570849 original size:27 final size:27
Alignment explanation
Indices: 114570772--114570849 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
114570762 AAATGACTAA
*
114570772 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
114570799 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
114570826 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
114570850 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:114572062 original size:9 final size:9
Alignment explanation
Indices: 114572050--114572108 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
114572040 TTTGATAAAC
114572050 ATGATATGT
1 ATGATATGT
*
114572059 ATGATATGCAC
1 ATGATATG--T
*
114572070 ATGACATGT
1 ATGATATGT
*
114572079 ATGATATGCAC
1 ATGATATG--T
114572090 ATGATATGT
1 ATGATATGT
114572099 ATGATATGT
1 ATGATATGT
114572108 A
1 A
114572109 CATGAGATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 25 0.62
11 15 0.38
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (9 bp):
ATGATATGT
Found at i:114572073 original size:20 final size:20
Alignment explanation
Indices: 114572048--114572118 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
114572038 ATTTTGATAA
114572048 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
114572068 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
114572088 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
*
114572108 ACATGAGATGT
1 ACATGATATGT
114572119 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:114572193 original size:23 final size:23
Alignment explanation
Indices: 114572163--114572305 Score: 250
Period size: 23 Copynumber: 6.1 Consensus size: 23
114572153 AGGAAGTGCA
114572163 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
114572186 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
114572210 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
114572233 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
114572256 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
114572279 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
114572303 AAA
1 AAA
114572306 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
23 71 0.62
24 44 0.38
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:114572230 original size:47 final size:47
Alignment explanation
Indices: 114572161--114572325 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
114572151 GGAGGAAGTG
114572161 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
114572208 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
114572255 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* * *
114572302 TAAAAGAGGC-TAGGCTCCAGTTAT
1 CAAAAG-GGCTTATGCCCCAGTTAT
114572326 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
46 23 0.21
47 68 0.62
48 16 0.15
49 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:114572276 original size:70 final size:70
Alignment explanation
Indices: 114572163--114572305 Score: 268
Period size: 70 Copynumber: 2.0 Consensus size: 70
114572153 AGGAAGTGCA
114572163 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
114572228 TTATT
66 TTATT
* *
114572233 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
114572298 TTATT
66 TTATT
114572303 AAA
1 AAA
114572306 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (70 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATT
Found at i:114573813 original size:10 final size:11
Alignment explanation
Indices: 114573797--114573822 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
114573787 GAATGGAAAT
114573797 TTTTTTTTACG
1 TTTTTTTTACG
114573808 TTTTTTTTACG
1 TTTTTTTTACG
114573819 TTTT
1 TTTT
114573823 CCATTCACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTTTTTACG
Found at i:114582696 original size:53 final size:53
Alignment explanation
Indices: 114582570--114582720 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
114582560 ATAAGTGCGC
* **
114582570 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
114582623 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
** *
114582676 CCGTATAAGACCAT-GTCTGGGAGATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
114582721 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:114584271 original size:12 final size:12
Alignment explanation
Indices: 114584254--114584296 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
114584244 AGTACTACCT
114584254 CGGCCTCGACCA
1 CGGCCTCGACCA
114584266 CGGCCTCGACCA
1 CGGCCTCGACCA
* *
114584278 TGGCTTCGACCA
1 CGGCCTCGACCA
*
114584290 TGGCCTC
1 CGGCCTC
114584297 TTCTTCGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.14, C:0.44, G:0.26, T:0.16
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:114586445 original size:31 final size:31
Alignment explanation
Indices: 114586407--114586516 Score: 211
Period size: 31 Copynumber: 3.5 Consensus size: 31
114586397 TTTAACGATT
114586407 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
114586438 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
114586469 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
114586500 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
114586517 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 78 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:114586593 original size:42 final size:42
Alignment explanation
Indices: 114586540--114586630 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
114586530 TGGCCCATAG
* ** *
114586540 GCCCA-TTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
114586581 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
114586623 GCCCATTT
1 GCCCATTT
114586631 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 5 0.11
42 39 0.89
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:114586828 original size:26 final size:27
Alignment explanation
Indices: 114586798--114586898 Score: 163
Period size: 26 Copynumber: 3.9 Consensus size: 27
114586788 GCTCTTTCGG
114586798 TAAACTGGGGCA-AAGCCCTTTTTCAA
1 TAAACTGGGGCATAAGCCCTTTTTCAA
**
114586824 TAAACTGGGGCATAAGCCC-TTTTCGG
1 TAAACTGGGGCATAAGCCCTTTTTCAA
114586850 TAAACTGGGGCATAAGCCC-TTTTCAA
1 TAAACTGGGGCATAAGCCCTTTTTCAA
114586876 TAAACTGGGGCATAAGCCCTTTT
1 TAAACTGGGGCATAAGCCCTTTT
114586899 GCACTTCATC
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
26 60 0.87
27 9 0.13
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (27 bp):
TAAACTGGGGCATAAGCCCTTTTTCAA
Found at i:114586853 original size:52 final size:52
Alignment explanation
Indices: 114586763--114586898 Score: 210
Period size: 52 Copynumber: 2.7 Consensus size: 52
114586753 CTGGAGGCCT
*
114586763 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCTC-TTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
114586811 AGCCCTTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCC-TTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
114586864 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
114586899 GCACTTCATC
Statistics
Matches: 81, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
47 1 0.01
48 8 0.10
49 3 0.04
50 10 0.12
51 5 0.06
52 48 0.59
53 6 0.07
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:114586973 original size:20 final size:20
Alignment explanation
Indices: 114586948--114587014 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
114586938 TTATGAATAC
114586948 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
**
114586968 ATCATGTGCATTTTGTACAT
1 ATCATGTGCATTTCATACAT
*
114586988 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
114587008 ATCATGT
1 ATCATGT
114587015 ATATCATATC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 39 0.95
21 2 0.05
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:114587888 original size:27 final size:27
Alignment explanation
Indices: 114587820--114587997 Score: 148
Period size: 27 Copynumber: 6.6 Consensus size: 27
114587810 CATCCTACAA
* * * *
114587820 GGGTGTTTTGGTAAATCTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAG
* **
114587847 GGGTATTTCT-ATAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAATCAG
*
114587874 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAATTTTACAAATCAG
* * *
114587900 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAG
* *
114587928 TGGTATTTTGGTAATTTTACTAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
*
114587955 GGGTGTTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AG
* *
114587982 GGGTACTGTGGTAATT
1 GGGTATTTTGGTAATT
114587998 CTATCCTACA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 116 0.96
28 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:114587914 original size:81 final size:81
Alignment explanation
Indices: 114587819--114587977 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
114587809 TCATCCTACA
* * *
114587819 AGGGTGTTTTGGTAAATCT-ACAAATCAAG-GGTATTTCT-ATAATTTT-GTAAATCAGGGGTAT
1 AGGGTATTTCGGT-AATCTCACAAA-CAAGTGGTATTT-TGATAATTTTACTAAAT-AGGGGTAT
114587880 TTTGGTAATTTTACAAATTG
62 TTTGGTAATTTTACAAATTG
* * * * *
114587900 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACTAACTAGGGGTGTTTTG
1 AGGGTATTTCGGTAATCTCACAAACAAGTGGTATTTTGATAATTTTACTAAATAGGGGTATTTTG
114587965 GTAATTTTACAAA
66 GTAATTTTACAAA
114587978 CTAGGGGTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
80 8 0.12
81 54 0.82
82 4 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTCGGTAATCTCACAAACAAGTGGTATTTTGATAATTTTACTAAATAGGGGTATTTTG
GTAATTTTACAAATTG
Found at i:114587942 original size:54 final size:53
Alignment explanation
Indices: 114587820--114587997 Score: 167
Period size: 54 Copynumber: 3.3 Consensus size: 53
114587810 CATCCTACAA
* * * * ** ** *
114587820 GGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTCTATAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAAT-TAGGGTATTTCGGTAATTTTACAAACCAG
*
114587874 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATT-AGGGTATTTCGGTAATTTTACAAACCAG
* * * * * *
114587928 TGGTATTTTGGTAATTTTACTAACTAGGGGTGTTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAATTA-GGGTATTTCGGTAATTTTACAAACCAG
* *
114587982 GGGTACTGTGGTAATT
1 GGGTATTTTGGTAATT
114587998 CTATCCTACA
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.01
54 101 0.99
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATTAGGGTATTTCGGTAATTTTACAAACCAG
Found at i:114588011 original size:54 final size:54
Alignment explanation
Indices: 114587871--114588030 Score: 146
Period size: 54 Copynumber: 3.0 Consensus size: 54
114587861 TTTTGTAAAT
* * * * *
114587871 CAGGGGTATTTTGGTAATTTTAC-AAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAGGGGTACTGTGGTAATTTTACTAACTAG-GGGTATTTCGGTAATTTAACAAAC
* * * * * *
114587925 CAGTGGTATTTTGGTAATTTTACTAACTAGGGGTGTTTTGGTAATTTTACAAAC
1 CAGGGGTACTGTGGTAATTTTACTAACTAGGGGTATTTCGGTAATTTAACAAAC
* * *
114587979 TAGGGGTACTGTGGTAATTCTATCCT-AC-AGGGGTATTTCAGTAATTTAACAA
1 CAGGGGTACTGTGGTAATT-T-TACTAACTAGGGGTATTTCGGTAATTTAACAA
114588031 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
54 78 0.89
55 7 0.08
56 3 0.03
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (54 bp):
CAGGGGTACTGTGGTAATTTTACTAACTAGGGGTATTTCGGTAATTTAACAAAC
Found at i:114588146 original size:81 final size:81
Alignment explanation
Indices: 114588029--114588226 Score: 290
Period size: 81 Copynumber: 2.4 Consensus size: 81
114588019 GTAATTTAAC
* * * * *
114588029 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATAGTAATTTTGTAAATCGAGGGT
* *
114588093 AAAACGGTAATTTTGTA
65 AAAACGGTAATTCTATA
*
114588110 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
114588175 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* *
114588191 AATCGAGGGTAAAATGGTAATTCTACAAATTGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
114588227 CATTTCAGTA
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 105 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:114588220 original size:27 final size:27
Alignment explanation
Indices: 114588029--114588212 Score: 262
Period size: 27 Copynumber: 6.8 Consensus size: 27
114588019 GTAATTTAAC
* *
114588029 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
114588056 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
*
114588083 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
114588110 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
114588137 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
114588164 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
114588191 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
114588213 CTACAAATTG
Statistics
Matches: 139, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 137 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:114591562 original size:5 final size:5
Alignment explanation
Indices: 114591554--114591606 Score: 58
Period size: 5 Copynumber: 11.0 Consensus size: 5
114591544 TTGTTTTATT
* *
114591554 TAAAA T-AAA TCAAA TAAAA -AAAGA -GAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAA-A TAAAA TAAAA TAAAA TAAAA TAAAA
114591602 TAAAA
1 TAAAA
114591607 ATACAAGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 8 0.19
5 34 0.81
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (5 bp):
TAAAA
Found at i:114592212 original size:31 final size:31
Alignment explanation
Indices: 114592177--114592242 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
114592167 ATAGAATGAC
114592177 TCCAATTACAGTTCTATTCTATTCCAGTGAA
1 TCCAATTACAGTTCTATTCTATTCCAGTGAA
114592208 TCCAATTACAGTTCTATTCTATTCCAGTGAA
1 TCCAATTACAGTTCTATTCTATTCCAGTGAA
114592239 -CCAA
1 TCCAA
114592243 ACGCGTCGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.36
Consensus pattern (31 bp):
TCCAATTACAGTTCTATTCTATTCCAGTGAA
Found at i:114597611 original size:52 final size:49
Alignment explanation
Indices: 114597535--114597694 Score: 148
Period size: 52 Copynumber: 3.2 Consensus size: 49
114597525 CCATGGCAGC
* * *
114597535 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAG
1 ATGTGATATGTG--TTCCGTATAAGACCATAGCTGGGATATGGCATCGGAG
* *
114597586 AAATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATC--AG
1 --ATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGATATGGCATCGGAG
* * * * * *
114597636 -TGTGATATGTGATCCGTGTAAGACCATGGCTGGGGTATGGCCTCGG-T
1 ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGATATGGCATCGGAG
114597683 ATGTGATATGTG
1 ATGTGATATGTG
114597695 ACTATGTGCA
Statistics
Matches: 90, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
46 26 0.29
47 11 0.12
48 11 0.12
50 2 0.02
52 29 0.32
53 11 0.12
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGATATGGCATCGGAG
Found at i:114601193 original size:26 final size:26
Alignment explanation
Indices: 114601157--114601318 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
114601147 TGATACAAAT
*
114601157 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
114601183 TGATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
114601209 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
114601235 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
114601261 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
114601287 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
114601313 TGATAA
1 TGATAA
114601319 GAATATCATG
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Done.