Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 376 of 410
Found at i:114603293 original size:138 final size:136
Alignment explanation
Indices: 114603105--114603391 Score: 493
Period size: 138 Copynumber: 2.1 Consensus size: 136
114603095 GAGTAGTCTC
* *
114603105 CCCAAATGGGTTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
114603170 GTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTCTGGCCTAGTACC
66 GTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTG-AAAAGGGCTCTGGCCCAGTACC
114603235 ACTGTTA
130 ACTGTTA
114603242 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
114603307 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATC
65 TGTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
114603372 ACTGTTA
130 ACTGTTA
**
114603379 CCTGAATGGGCTT
1 CCCAAATGGGCTT
114603392 AGACCCAATG
Statistics
Matches: 142, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
137 57 0.40
138 85 0.60
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:114605821 original size:27 final size:28
Alignment explanation
Indices: 114605790--114605852 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
114605780 TAAAAATAAC
*
114605790 AATAATATTCAAAAAAAATGATAAAA-A
1 AATAATATTCAAAAAAAATAATAAAAGA
* * * *
114605817 AATAATGTTCTAATAATATAATAAAAGA
1 AATAATATTCAAAAAAAATAATAAAAGA
114605845 AATAATAT
1 AATAATAT
114605853 ATTTATAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 21 0.72
28 8 0.28
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
AATAATATTCAAAAAAAATAATAAAAGA
Found at i:114606127 original size:3 final size:3
Alignment explanation
Indices: 114606119--114606147 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
114606109 TAATTACAAA
114606119 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
114606148 CATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:114606367 original size:19 final size:20
Alignment explanation
Indices: 114606300--114606367 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 20
114606290 AAATAAAGTA
*
114606300 ATTAATAATA-ATACTATAT
1 ATTAATAATATACACTATAT
*
114606319 ATAAATATATATACA-TATAT
1 ATTAATA-ATATACACTATAT
* *
114606339 AATAAAAATATACACTA-AT
1 ATTAATAATATACACTATAT
114606358 ATTAATAATA
1 ATTAATAATA
114606368 ATAATGATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 23 0.59
20 14 0.36
21 2 0.05
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTAATAATATACACTATAT
Found at i:114606509 original size:139 final size:138
Alignment explanation
Indices: 114606243--114606529 Score: 368
Period size: 139 Copynumber: 2.1 Consensus size: 138
114606233 TAATACTAAC
* * *
114606243 AATAATAATGAAATATAAAAAGCAAATATAATGTAATGATAATATAAAAATAAAGTAATTAATAA
1 AATAATAATGAAATACAAAAAGCAAATATAATATAATGAAAATATAAAAATAAAGTAATTAATAA
* **
114606308 TAATACTATATATAAATATATATACATATATAATAAAAATATACACTAATATTAATAATAATA-A
66 TAATACTATATATAAATATAAATACATATATAATAAAAATATA-ACTAATAAAAATAATAATATA
114606372 TGATAATAGT
130 T-ATAATAGT
* *
114606382 AATAATATTGAAATACAAAAAGCAAATATAATATAAT-AAAGATATTAAAATAAAGTAATTAGA-
1 AATAATAATGAAATACAAAAAGCAAATATAATATAATGAAA-ATATAAAAATAAAGTAATTA-AT
* * *
114606445 AATAATACTATATATAAATATAAATATATATATACATATACATAT-A-TAATAAAAATACACTAA
64 AATAATACTATATATAAATATAAATACATATATA-ATAAAAATATAACTAATAAAAATA-A-TAA
*
114606508 TATATATAATATT
126 TATATATAATAGT
114606521 AATAATAAT
1 AATAATAAT
114606530 AATATAAATA
Statistics
Matches: 129, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
137 9 0.07
138 4 0.03
139 105 0.81
140 11 0.09
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (138 bp):
AATAATAATGAAATACAAAAAGCAAATATAATATAATGAAAATATAAAAATAAAGTAATTAATAA
TAATACTATATATAAATATAAATACATATATAATAAAAATATAACTAATAAAAATAATAATATAT
ATAATAGT
Found at i:114606632 original size:3 final size:3
Alignment explanation
Indices: 114606149--114606615 Score: 137
Period size: 3 Copynumber: 155.0 Consensus size: 3
114606139 GATGATGATC
* * ** *
114606149 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATAA ATA TTA ACG GTGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA AT-A
* ** ** *
114606196 A-A ATTA ATA GA-A ATA ATA ATG ATA ACG ATA AGG ATA ATA ATA CTA
1 ATA A-TA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** * *
114606241 ACA ATA ATA ATG A-A AT- ATA AAA AGC A-A AT- ATA AT- GTA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
114606284 AT- ATA AAA ATA A-A GTA ATTA ATA ATA ATA CT- ATA TATA A-A TATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA -ATA ATA -ATA
* * *
114606328 TATA CATA TATA ATA AAA AT- ATA CACTA ATA TTA ATA ATA ATA ATG
1 -ATA -ATA -ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA
* * * **
114606374 ATA ATA GTA ATA ATA TTG A-A ATA CA-A A-A AGC A-A AT- ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
* * *
114606414 ATA ATA A-A GATA TTA A-A ATA A-A GTA ATTA GA-A ATA ATA CT- ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA A-TA -ATA ATA ATA ATA ATA
*
114606457 TATA A-A TATAA ATA TATA TATA CAT- ATA CATA TATA ATA AAA ATA CACTA
1 -ATA ATA -AT-A ATA -ATA -ATA -ATA ATA -ATA -ATA ATA ATA ATA -A-TA
* *
114606507 AT- ATA TATA ATA TTA ATA ATA ATA AT- ATAA ATA ATA AT- ATA TATGT
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -AT-A
114606553 ATGA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA ATA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
114606598 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
114606616 GGAGTAGTAA
Statistics
Matches: 342, Mismatches: 70, Indels: 104
0.66 0.14 0.20
Matches are distributed among these distances:
2 43 0.13
3 230 0.67
4 63 0.18
5 6 0.02
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:114607716 original size:7 final size:7
Alignment explanation
Indices: 114607704--114607837 Score: 52
Period size: 7 Copynumber: 17.7 Consensus size: 7
114607694 TAAGGAATAG
114607704 TTGGGTT
1 TTGGGTT
*
114607711 TTGGGTA
1 TTGGGTT
114607718 TTGGGTTT
1 TTGGG-TT
*
114607726 TAATGGATT
1 T--TGGGTT
* *
114607735 TAGGGAT
1 TTGGGTT
114607742 TTGGGTT
1 TTGGGTT
* *
114607749 CTGGGTA
1 TTGGGTT
114607756 TTGGGTTT
1 TTGGG-TT
*
114607764 TAATGGATT
1 T--TGGGTT
* *
114607773 TAGGGAT
1 TTGGGTT
*
114607780 TTGGGTA
1 TTGGGTT
114607787 TTGGGTTT
1 TTGGG-TT
* *
114607795 TAATGGATA
1 T--TGGGTT
*
114607804 GTGGGGTT
1 TTG-GGTT
114607812 TTGGGTT
1 TTGGGTT
114607819 TTGGGTT
1 TTGGGTT
*
114607826 TTGGGTA
1 TTGGGTT
114607833 TTGGG
1 TTGGG
114607838 CACTGGCAAT
Statistics
Matches: 90, Mismatches: 27, Indels: 20
0.66 0.20 0.15
Matches are distributed among these distances:
7 64 0.71
8 10 0.11
9 7 0.08
10 9 0.10
ACGTcount: A:0.13, C:0.01, G:0.40, T:0.46
Consensus pattern (7 bp):
TTGGGTT
Found at i:114607725 original size:31 final size:32
Alignment explanation
Indices: 114607692--114607827 Score: 143
Period size: 38 Copynumber: 4.1 Consensus size: 32
114607682 GTGTTTTAGG
114607692 TTTAA-GGAATAGTTGGGTTTTGGGTATTGGGT
1 TTTAATGG-ATAGTTGGGTTTTGGGTATTGGGT
*
114607724 TTTAATGGATTTAGGGATTTGGGTTCTGGGTATTGGGT
1 TTTAATGGA--TA--G--TTGGGTTTTGGGTATTGGGT
*
114607762 TTTAATGGAT--TTAGGGATTTGGGTATTGGGT
1 TTTAATGGATAGTT-GGGTTTTGGGTATTGGGT
* *
114607793 TTTAATGGATAGTGGGGTTTTGGGTTTTGGGT
1 TTTAATGGATAGTTGGGTTTTGGGTATTGGGT
114607825 TTT
1 TTT
114607828 GGGTATTGGG
Statistics
Matches: 88, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
30 2 0.02
31 26 0.30
32 25 0.28
33 3 0.03
34 2 0.02
36 2 0.02
38 28 0.32
ACGTcount: A:0.16, C:0.01, G:0.37, T:0.46
Consensus pattern (32 bp):
TTTAATGGATAGTTGGGTTTTGGGTATTGGGT
Found at i:114607792 original size:38 final size:37
Alignment explanation
Indices: 114607704--114607792 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 37
114607694 TAAGGAATAG
114607704 TTGGGTTTTGGGTATTGGGTTTTAATGGATTTAGGGAT
1 TTGGG-TTTGGGTATTGGGTTTTAATGGATTTAGGGAT
114607742 TTGGGTTCTGGGTATTGGGTTTTAATGGATTTAGGGAT
1 TTGGGTT-TGGGTATTGGGTTTTAATGGATTTAGGGAT
114607780 TTGGGTATTGGGT
1 TTGGGT-TTGGGT
114607793 TTTAATGGAT
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
37 2 0.04
38 46 0.94
39 1 0.02
ACGTcount: A:0.15, C:0.01, G:0.38, T:0.46
Consensus pattern (37 bp):
TTGGGTTTGGGTATTGGGTTTTAATGGATTTAGGGAT
Found at i:114608560 original size:79 final size:78
Alignment explanation
Indices: 114608421--114608640 Score: 334
Period size: 79 Copynumber: 2.8 Consensus size: 78
114608411 AGAGACTAAA
* ** * * * *
114608421 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTAAAAAAAACATAAATTGAAAATATCT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAA-TAAAAATATCT
*
114608486 CAGCGTGTGTCCCG
65 CAGCGTGTGACCCG
*
114608500 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAACTAAAAATACCT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAA-TAAAAATATCT
114608565 CAGCGTGTGACCCG
65 CAGCGTGTGACCCG
114608579 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTG-AAAAAATAGAAATAAAAATATC
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAATAAAAATATC
114608641 AGGATACCAA
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
77 9 0.07
78 12 0.09
79 109 0.84
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAATAAAAATATCTC
AGCGTGTGACCCG
Found at i:114620107 original size:30 final size:30
Alignment explanation
Indices: 114620071--114620138 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
114620061 GGATCAATAA
114620071 TTTTATTTTTTTATTTTTAGGAATTTAGTT
1 TTTTATTTTTTTATTTTTAGGAATTTAGTT
114620101 TTTTATTTTTTTATTTTTAGGAATTTAGTT
1 TTTTATTTTTTTATTTTTAGGAATTTAGTT
114620131 TTTT-TTTT
1 TTTTATTTT
114620139 CAAATTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (30 bp):
TTTTATTTTTTTATTTTTAGGAATTTAGTT
Found at i:114627204 original size:26 final size:26
Alignment explanation
Indices: 114627146--114627252 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
114627136 TGGTACAAAT
114627146 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
114627171 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
114627197 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
114627223 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
114627249 TGAT
1 TGAT
114627253 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 21 0.28
26 55 0.72
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:114634228 original size:26 final size:26
Alignment explanation
Indices: 114634199--114634306 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
114634189 TGGTACAAAT
114634199 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
114634225 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
114634251 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
114634277 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
114634303 TGAT
1 TGAT
114634307 GGGCATTTGT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:114637390 original size:10 final size:10
Alignment explanation
Indices: 114637371--114637420 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
114637361 TTAAATTCTA
114637371 AAAGATAAAT
1 AAAGATAAAT
114637381 ACAA-ATAAAT
1 A-AAGATAAAT
*
114637391 AAAGATAATT
1 AAAGATAAAT
114637401 AAAGATAAAT
1 AAAGATAAAT
*
114637411 AAAAATAAAT
1 AAAGATAAAT
114637421 CGTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:114638829 original size:21 final size:22
Alignment explanation
Indices: 114638805--114638845 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
114638795 GAATGGAAAA
114638805 TAAAAAAAAAT-AAAGGAAAGT
1 TAAAAAAAAATAAAAGGAAAGT
* *
114638826 TAAAAGAATATAAAAGGAAA
1 TAAAAAAAAATAAAAGGAAA
114638846 AAATTAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (22 bp):
TAAAAAAAAATAAAAGGAAAGT
Found at i:114639131 original size:15 final size:15
Alignment explanation
Indices: 114639111--114639148 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
114639101 TTTATACTAC
114639111 AAAATATTTATTATT
1 AAAATATTTATTATT
114639126 AAAATATTTATTATT
1 AAAATATTTATTATT
114639141 AAAATATT
1 AAAATATT
114639149 AATATTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:114639297 original size:26 final size:26
Alignment explanation
Indices: 114639268--114639319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
114639258 TATGATTAAA
114639268 TATAA-ATGTTTAATAATATTAAAAAT
1 TATAATAT-TTTAATAATATTAAAAAT
*
114639294 TATAATATTTTAATAATTTTAAAAAT
1 TATAATATTTTAATAATATTAAAAAT
114639320 AAAAATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
TATAATATTTTAATAATATTAAAAAT
Found at i:114639326 original size:26 final size:26
Alignment explanation
Indices: 114639276--114639326 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
114639266 AATATAAATG
* *
114639276 TTTAATAATATTAAAAATTATAATAT
1 TTTAATAATATTAAAAATAAAAATAT
*
114639302 TTTAATAATTTTAAAAATAAAAATA
1 TTTAATAATATTAAAAATAAAAATA
114639327 AATTTTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
TTTAATAATATTAAAAATAAAAATAT
Found at i:114642063 original size:38 final size:38
Alignment explanation
Indices: 114642012--114642100 Score: 142
Period size: 38 Copynumber: 2.3 Consensus size: 38
114642002 ACCCATTAAA
* *
114642012 ACCCAATACCCAAATCCTTAAATCCATTAAAACCCAAT
1 ACCCAAAACCCAAATCCCTAAATCCATTAAAACCCAAT
* *
114642050 ACCCAGAACCCAAATCCCTAAATCCATTAAAACCTAAT
1 ACCCAAAACCCAAATCCCTAAATCCATTAAAACCCAAT
114642088 ACCCAAAACCCAA
1 ACCCAAAACCCAA
114642101 CTATCCCTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (38 bp):
ACCCAAAACCCAAATCCCTAAATCCATTAAAACCCAAT
Found at i:114643227 original size:18 final size:18
Alignment explanation
Indices: 114643179--114643837 Score: 79
Period size: 18 Copynumber: 34.9 Consensus size: 18
114643169 ACTACCCTAT
*
114643179 TATTATTATTATTTTTTCA
1 TATTATTATTATTATTT-A
*
114643198 TACATATATATTATTATTTA
1 TA-TTAT-TATTATTATTTA
114643218 TATTATTATTATTAATATTA
1 TATTATTATTATT-AT-TTA
*
114643238 TATATATTAGTGTATT-TTTT
1 TAT-TATTA-T-TATTATTTA
*
114643258 TATATATGTA-TATGTATATA
1 TAT-TAT-TATTAT-TATTTA
*
114643278 TATTTATATATAGTATTATTTT
1 TA-TTAT-TAT--TATTATTTA
* *
114643300 TAGTTACT-TTATT-TTAA
1 TA-TTATTATTATTATTTA
114643317 TATCT-TTATTA-TA-TTA
1 TAT-TATTATTATTATTTA
114643333 TATTTACTT-TT-TGTATTTCAA
1 TA-TTA-TTATTAT-TATTT--A
*
114643354 TATTATTACTATTATCATTA
1 TATTATTATTATTAT--TTA
* *
114643374 TTATTATTAATATTAGTGTA
1 -TATTATTATTATTA-TTTA
* *
114643394 TATTTTTATTATTATGTA
1 TATTATTATTATTATTTA
114643412 TATATATGTA-TATATATTTA
1 TAT-TAT-TATTAT-TATTTA
*
114643432 TA-TA-TAGTATTATTTTA
1 TATTATTATTATTA-TTTA
*
114643449 TATGTATATATATATTTATGTA
1 TAT-TAT-TAT-TA-TTATTTA
* *
114643471 TAGTATCATT-TTATATGTA
1 TATTATTATTATTAT-T-TA
*
114643490 TA-TA-TATT-TATATATA
1 TATTATTATTAT-TATTTA
*
114643506 GTATTATTTTTAATTACTTTA
1 -TATTATTATT-ATTA-TTTA
* * *
114643527 TTTTAATATTTTTA-TTA
1 TATTATTATTATTATTTA
* * *
114643544 CATT-TTCTTTTTGCATTTCAA
1 TATTATTATTATT--ATTT--A
*
114643565 TATTATTAATATTATCATTA
1 TATTATTATTATTAT--TTA
* * *
114643585 TTATTATTAATACTAGTGTA
1 -TATTATTATTATTA-TTTA
* * *
114643605 TATTTTTAATATATATCTA
1 TATTATTATTAT-TATTTA
*
114643624 TA-TA-T-TTA-TATATA
1 TATTATTATTATTATTTA
114643638 GTATTATTATTAATTACTTTA
1 -TATTATTATT-ATTA-TTTA
114643659 T-TT-TTA-TATTATCATTA
1 TATTATTATTATTAT--TTA
* *
114643676 CATTA-TATT-TGCTTTTTA
1 TATTATTATTAT--TATTTA
*
114643694 TATT-TCATTATTATTGT-
1 TATTATTATTATTATT-TA
* **
114643711 TAGTATTATTA-TCCTTA
1 TATTATTATTATTATTTA
* ** *
114643728 TCGTTATCGTTATTATTTC
1 T-ATTATTATTATTATTTA
* ** *
114643747 TATTATTTTTCATTGCTAA
1 TATTATTATT-ATTATTTA
*
114643766 TATTTATTACTATTATTGT-
1 TA-TTATTATTATTATT-TA
*
114643785 TACTATTATTATTA-TTA
1 TATTATTATTATTATTTA
114643802 TTATTATTATTATTA-TTA
1 -TATTATTATTATTATTTA
*
114643820 TTATTATTATTATCATTT
1 -TATTATTATTATTATTT
114643838 TGTAATTACT
Statistics
Matches: 467, Mismatches: 84, Indels: 178
0.64 0.12 0.24
Matches are distributed among these distances:
14 5 0.01
15 3 0.01
16 30 0.06
17 51 0.11
18 113 0.24
19 82 0.18
20 79 0.17
21 66 0.14
22 28 0.06
23 10 0.02
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (18 bp):
TATTATTATTATTATTTA
Found at i:114643245 original size:15 final size:14
Alignment explanation
Indices: 114643205--114643246 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
114643195 TCATACATAT
114643205 ATATTATTAT-TT-
1 ATATTATTATATTA
114643217 ATATTATTATTATTA
1 ATATTATTA-TATTA
114643232 ATATTATATATATTA
1 ATATTAT-TATATTA
114643247 GTGTATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.35
13 1 0.04
14 2 0.08
15 12 0.46
16 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATATTATTATATTA
Found at i:114643296 original size:12 final size:12
Alignment explanation
Indices: 114643201--114643512 Score: 77
Period size: 12 Copynumber: 26.2 Consensus size: 12
114643191 TTTTTCATAC
114643201 ATATATATTATT
1 ATATATATTATT
*
114643213 ATTTATATTATT
1 ATATATATTATT
*
114643225 AT-TATTAATATT
1 ATATA-TATTATT
*
114643237 ATATATATTAGT
1 ATATATATTATT
* *
114643249 GTAT-T-TTTTT
1 ATATATATTATT
*
114643259 ATATATGTATATGT
1 ATATATAT-TAT-T
114643273 ATATATA-T-TT
1 ATATATATTATT
*
114643283 ATATATAGTATT
1 ATATATATTATT
114643295 AT-T-T-TTAGTT
1 ATATATATTA-TT
114643305 ACT-T-TATT-TT
1 A-TATATATTATT
*
114643315 A-ATATCTTTATT
1 ATATAT-ATTATT
114643327 ATAT-TA-TATT
1 ATATATATTATT
* *
114643337 -TACTTTTTGTATT
1 ATA-TATAT-TATT
114643350 -TCA-ATATTATT
1 AT-ATATATTATT
114643361 ACTATTATCATTATT
1 A-TA-TAT-ATTATT
*
114643376 AT-TATTAATATT
1 ATATA-TATTATT
*
114643388 AGTGTATATT-TT
1 A-TATATATTATT
114643400 -TAT-TATTATGT
1 ATATATATTAT-T
114643411 ATATATATGTA-T
1 ATATATAT-TATT
114643423 ATATAT-TTA-T
1 ATATATATTATT
114643433 ATATAGTATTATT
1 ATATA-TATTATT
114643446 -T-TATATGTA-T
1 ATATATAT-TATT
114643456 ATATATATTTATGT
1 ATATATA-TTAT-T
114643470 ATAGTATCATT-TT
1 ATA-TAT-ATTATT
114643483 ATATGTATATATATTT
1 ATA--TATAT-TA-TT
*
114643499 ATATATAGTATT
1 ATATATATTATT
114643511 AT
1 AT
114643513 TTTTAATTAC
Statistics
Matches: 231, Mismatches: 20, Indels: 98
0.66 0.06 0.28
Matches are distributed among these distances:
9 9 0.04
10 42 0.18
11 25 0.11
12 78 0.34
13 30 0.13
14 29 0.13
15 12 0.05
16 6 0.03
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.58
Consensus pattern (12 bp):
ATATATATTATT
Found at i:114643405 original size:28 final size:28
Alignment explanation
Indices: 114643371--114643424 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
114643361 ACTATTATCA
114643371 TTATTATTAT-TA-ATATTAGTGTATATTT
1 TTATTATTATGTATATA-TA-TGTATATTT
114643399 TTATTATTATGTATATATATGTATAT
1 TTATTATTATGTATATATATGTATAT
114643425 ATATTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 17 0.71
29 4 0.17
30 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.59
Consensus pattern (28 bp):
TTATTATTATGTATATATATGTATATTT
Found at i:114643417 original size:2 final size:2
Alignment explanation
Indices: 114643410--114643505 Score: 63
Period size: 2 Copynumber: 48.0 Consensus size: 2
114643400 TATTATTATG
* * *
114643410 TA TA TA TA TG TA TA TA TA TT TA TA TA TA GTA T- TA T- TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * * * *
114643451 TG TA TA TA TA TA TT TA TG TA TA GTA TCA T- TT TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA
*
114643494 TA TT TA TA TA TA
1 TA TA TA TA TA TA
114643506 GTATTATTTT
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
1 3 0.04
2 63 0.88
3 6 0.08
ACGTcount: A:0.38, C:0.01, G:0.06, T:0.55
Consensus pattern (2 bp):
TA
Found at i:114643421 original size:10 final size:10
Alignment explanation
Indices: 114643406--114643509 Score: 78
Period size: 10 Copynumber: 10.7 Consensus size: 10
114643396 TTTTTATTAT
114643406 TATGTATATA
1 TATGTATATA
114643416 TATGTATATA
1 TATGTATATA
*
114643426 TATTTATATA
1 TATGTATATA
114643436 TA-GTAT-TA
1 TATGTATATA
*
114643444 T-TTTATATGTA
1 TATGTATA--TA
* *
114643455 TATATATATT
1 TATGTATATA
114643465 TATGTATAGTA
1 TATGTATA-TA
114643476 TCAT-T-T-TA
1 T-ATGTATATA
114643484 TATGTATATA
1 TATGTATATA
*
114643494 TATTTATATA
1 TATGTATATA
114643504 TA-GTAT
1 TATGTAT
114643510 TATTTTTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
7 2 0.03
8 10 0.13
9 7 0.09
10 43 0.57
11 6 0.08
12 7 0.09
ACGTcount: A:0.37, C:0.01, G:0.08, T:0.55
Consensus pattern (10 bp):
TATGTATATA
Found at i:114643459 original size:35 final size:33
Alignment explanation
Indices: 114643414--114643515 Score: 168
Period size: 33 Copynumber: 3.0 Consensus size: 33
114643404 ATTATGTATA
114643414 TATATGTATATATATTTATATATAGTATTATTT
1 TATATGTATATATATTTATATATAGTATTATTT
* *
114643447 TATATGTATATATATATTTATGTATAGTATCATTT
1 TATATG--TATATATATTTATATATAGTATTATTT
114643482 TATATGTATATATATTTATATATAGTATTATTT
1 TATATGTATATATATTTATATATAGTATTATTT
114643515 T
1 T
114643516 TAATTACTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
33 32 0.51
35 31 0.49
ACGTcount: A:0.35, C:0.01, G:0.07, T:0.57
Consensus pattern (33 bp):
TATATGTATATATATTTATATATAGTATTATTT
Found at i:114643498 original size:148 final size:141
Alignment explanation
Indices: 114643221--114643481 Score: 318
Period size: 142 Copynumber: 1.8 Consensus size: 141
114643211 TTATTTATAT
* *
114643221 TATTATTATTAATATTATATATATTAGTGTATTTTTTTATATATGTATATGTATATATATTTATA
1 TATTATCATTAATATTATATATATTAGTGTATTTTTTTATATATATATATGTATATATATTTATA
* * * * *
114643286 TATAGTATTATTTTTAGTTACTTTATTTTAATATCTTTATTATATTATATTTACTTTTTGTATTT
66 TATAGTATTATTTTTAG-TACTGTATTATAATATATTTATTATAGTATATTTACTTTTTATATTT
114643351 CAATATTATTAC
130 CAATATTATTAC
*
114643363 TATTATCATTATTATTAT-TAATATTAGTGTATATTTTTATTATTATGTATATATATGTATATAT
1 TATTATCATTAATATTATAT-ATATTAGTG--TATTTTT-TTA-TA--TATATATATGTATATAT
114643427 ATTTATATATAGTATTA-TTTTA-TA-TGTA-TAT-ATATATTTATGTATAGTATCATTT
59 ATTTATATATAGTATTATTTTTAGTACTGTATTATAATATATTTAT-TATAGTAT-ATTT
114643482 TATATGTATA
Statistics
Matches: 103, Mismatches: 7, Indels: 16
0.82 0.06 0.13
Matches are distributed among these distances:
141 1 0.01
142 34 0.33
143 9 0.09
144 14 0.14
145 5 0.05
146 2 0.02
147 5 0.05
148 33 0.32
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.59
Consensus pattern (141 bp):
TATTATCATTAATATTATATATATTAGTGTATTTTTTTATATATATATATGTATATATATTTATA
TATAGTATTATTTTTAGTACTGTATTATAATATATTTATTATAGTATATTTACTTTTTATATTTC
AATATTATTAC
Found at i:114643648 original size:19 final size:19
Alignment explanation
Indices: 114643586--114643648 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
114643576 TTATCATTAT
*
114643586 TATTA-TTAATACTAGTGTA
1 TATTATTTAATA-TAGTATA
*
114643605 TATT-TTTAATATA-TATC
1 TATTATTTAATATAGTATA
114643622 TATATATTTATATATAGTAT-
1 TAT-TATTTA-ATATAGTATA
114643642 TATTATT
1 TATTATT
114643649 AATTACTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 5 0.14
18 3 0.08
19 18 0.49
20 8 0.22
21 3 0.08
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.56
Consensus pattern (19 bp):
TATTATTTAATATAGTATA
Found at i:114643794 original size:3 final size:3
Alignment explanation
Indices: 114643769--114643832 Score: 101
Period size: 3 Copynumber: 21.3 Consensus size: 3
114643759 TTGCTAATAT
* * *
114643769 TTA TTA CTA TTA TTG TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
114643817 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
114643833 CATTTTGTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:114643907 original size:25 final size:23
Alignment explanation
Indices: 114643879--114643924 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
114643869 TTATTATATT
114643879 TCATCTATAATTATTTTCTTATCAC
1 TCATCTATAA-TA-TTTCTTATCAC
*
114643904 TCATCTATTATATTTCTTATC
1 TCATCTATAATATTTCTTATC
114643925 TATTTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 2 0.10
25 9 0.45
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (23 bp):
TCATCTATAATATTTCTTATCAC
Found at i:114643933 original size:17 final size:19
Alignment explanation
Indices: 114643906--114643951 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
114643896 CTTATCACTC
114643906 ATCTA-TTATATT-TC-TT
1 ATCTATTTATATTGTCATT
114643922 ATCTATTTATATTGTCATT
1 ATCTATTTATATTGTCATT
114643941 AT-TATTT-TATT
1 ATCTATTTATATT
114643952 ATATCTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.19
17 11 0.41
18 7 0.26
19 4 0.15
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (19 bp):
ATCTATTTATATTGTCATT
Found at i:114656136 original size:79 final size:78
Alignment explanation
Indices: 114656024--114656244 Score: 295
Period size: 79 Copynumber: 2.8 Consensus size: 78
114656014 TTGGTATCCT
114656024 GATATTTTTATTTCTA-TTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCG
1 GATATTTTTATTTCTATTTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCG
*
114656088 GGTCACACGCTGA
66 GGACACACGCTGA
114656101 -AGTATTTTTAGTTTCTATTTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 GA-TATTTTTA-TTTCTATTTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
*
114656165 TGGGACACACGCTGA
64 CGGGACACACGCTGA
* * ** * * *
114656180 GATATTTTCAATTT-TATGTTTTTTTAAAAAAAGTTGACTCGTATTGCAAGAGGTGAGTTGAGCC
1 GATATTTT-TATTTCTAT-TTTTTTCAAAAAAA-TCAACTCATATTACGAGAGGTGAGTTGAGCC
114656244 T
63 T
114656245 TTTAGTCTCT
Statistics
Matches: 128, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
76 1 0.01
77 8 0.06
78 9 0.07
79 81 0.63
80 29 0.23
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (78 bp):
GATATTTTTATTTCTATTTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCG
GGACACACGCTGA
Found at i:114656910 original size:38 final size:38
Alignment explanation
Indices: 114656831--114656964 Score: 214
Period size: 38 Copynumber: 3.5 Consensus size: 38
114656821 TTTGCCAGGG
* * *
114656831 CCCAATACCCAAAACCCAAAACCCCACTATCCATTAAAA
1 CCCAATACCCAAAACCCAAATCCCTA-AATCCATTAAAA
*
114656870 CCCAATACCCAATACCCAAATCCCTAAATCCATTAAAA
1 CCCAATACCCAAAACCCAAATCCCTAAATCCATTAAAA
*
114656908 CCCAATACCCAGAACCCAAATCCCTAAATCCATTAAAA
1 CCCAATACCCAAAACCCAAATCCCTAAATCCATTAAAA
114656946 CCCAATACCCAAAACCCAA
1 CCCAATACCCAAAACCCAA
114656965 CTATCCCTTA
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 65 0.74
39 23 0.26
ACGTcount: A:0.46, C:0.40, G:0.01, T:0.14
Consensus pattern (38 bp):
CCCAATACCCAAAACCCAAATCCCTAAATCCATTAAAA
Found at i:114658063 original size:6 final size:6
Alignment explanation
Indices: 114658054--114658670 Score: 127
Period size: 6 Copynumber: 101.5 Consensus size: 6
114658044 TTACTACTCC
*
114658054 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTCA- TACATAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATT-AT TA-TTAT
*
114658103 ATATTAT TATT-T ATATTAT TATTAT TATTAA TATTA- TATATAT TAGTGTAT
1 -TATTAT TATTAT -TATTAT TATTAT TATTAT TATTAT TAT-TAT TA-T-TAT
*
114658154 TTTTAT T-TTA- TATGTA- TATGTAT ATATATAT T-TATAT T-TATAT
1 TATTAT TATTAT TAT-TAT TAT-TAT -TAT-TAT TAT-TAT TAT-TAT
* * *
114658197 ATAGTAT TATT-T CTAATTAC T-TTATT TAATAT CT-TTAT TA-TAT TA-TAT
1 -TATTAT TATTAT -T-ATTAT TATTA-T TATTAT -TATTAT TATTAT TATTAT
** * * * *
114658245 T-TGCT T-TT-T GTATT-T CAATAT TATTAC TATTAT CATTAT TATTAT
1 TATTAT TATTAT -TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
* *
114658290 TAATAT TAGTGTA- TATTTT TATTAT ATATGTA- TATATAT GTA-TAT
1 TATTAT TA-T-TAT TATTAT TATTAT -TAT-TAT TAT-TAT -TATTAT
* * * *
114658335 ATATT-T ATATATAT TATTAT TTTTAAT TACT-T TATT-T TAATAT T-TTTT
1 -TATTAT -TAT-TAT TATTAT TATT-AT TATTAT TATTAT TATTAT TATTAT
** * * * *
114658383 TATTA- TATT-T GCTTTT TGCAGTTCAA TATTAT TACTAT TATCAT TATTAT
1 TATTAT TATTAT TATTAT T--A-TT-AT TATTAT TATTAT TATTAT TATTAT
* * *
114658433 TATTAA TATTAGT GTA-TAT TTTTAA TATATAT CTATATAT T-TATAT
1 TATTAT TATTA-T -TATTAT TATTAT TAT-TAT -TAT-TAT TAT-TAT
* * * * *
114658479 ATAGTAT TATTAT TAATTAC T-TTAT TTTTA- TATTAT CATTA- CATTA-
1 -TATTAT TATTAT T-ATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
** * * * * * **
114658525 TATT-T GCTTTT TA-TAT T-TCAT TATTGT TGTTAG TATTAT TATCCT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
** * * **** *
114658570 TATCGT TATCAT TATTAT T-TCTAT TAATAT TCACCGC TAATACT TATTAT
1 TATTAT TATTAT TATTAT TAT-TAT TATTAT T-ATTAT TATTA-T TATTAT
*
114658620 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATGAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
114658668 TAT
1 TAT
114658671 CATCATCATC
Statistics
Matches: 458, Mismatches: 90, Indels: 126
0.68 0.13 0.19
Matches are distributed among these distances:
4 2 0.00
5 72 0.16
6 294 0.64
7 57 0.12
8 30 0.07
9 2 0.00
10 1 0.00
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (6 bp):
TATTAT
Found at i:114658155 original size:41 final size:38
Alignment explanation
Indices: 114658066--114658207 Score: 123
Period size: 39 Copynumber: 3.7 Consensus size: 38
114658056 TTATTATTAT
*
114658066 TATTATTA-TTATTATTATTATTATTATTCATACATATA
1 TATTATTATTTA-TATTATTATTATTATTAATACATATA
*
114658104 TATTATTATTTATATTATTATTATTATTAATATTATATA
1 TATTATTATTTATATTATTATTATTATTAATA-CATATA
* * *
114658143 TATTAGTGTATTTTTATT-TTA-TATGTA-TATGTATATATA
1 TATTA-T-TATTTATATTATTATTAT-TATTA-ATACATATA
*
114658182 TATT-TATATTTATATATAGTATTATT
1 TATTAT-TATTTATAT-TATTATTATT
114658208 TCTAATTACT
Statistics
Matches: 88, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
37 9 0.10
38 28 0.32
39 31 0.35
40 11 0.12
41 9 0.10
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (38 bp):
TATTATTATTTATATTATTATTATTATTAATACATATA
Found at i:114658325 original size:10 final size:10
Alignment explanation
Indices: 114658312--114658348 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
114658302 ATATTTTTAT
114658312 TATATATGTA
1 TATATATGTA
114658322 TATATATGTA
1 TATATATGTA
*
114658332 TATATATTTA
1 TATATATGTA
114658342 TATATAT
1 TATATAT
114658349 TATTATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (10 bp):
TATATATGTA
Found at i:114658349 original size:10 final size:10
Alignment explanation
Indices: 114658301--114658349 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
114658291 AATATTAGTG
*
114658301 TATATTTTTA
1 TATATATTTA
*
114658311 TTATATATGTA
1 -TATATATTTA
*
114658322 TATATATGTA
1 TATATATTTA
114658332 TATATATTTA
1 TATATATTTA
114658342 TATATATT
1 TATATATT
114658350 ATTATTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
10 27 0.77
11 8 0.23
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (10 bp):
TATATATTTA
Found at i:114658408 original size:146 final size:147
Alignment explanation
Indices: 114658116--114658481 Score: 521
Period size: 146 Copynumber: 2.5 Consensus size: 147
114658106 TTATTATTTA
* * * *
114658116 TATTATTATTATTATTAATATTA-TATATATTAGTG--TATTTTTATTTTATATGTATATGTATA
1 TATTACTATTATCATTATTATTATTA-ATATTAGTGTATATTTTTATTATATATGTATA--TATA
114658178 TATATATTTATATTTATATATAGTATTATTTCTAATTACTTTATTTAATATCTTTATTATATTAT
63 T-TATA--TATATTTATATATAGTATTATTTCTAATTACTTTATTTAATATCTTTATTATATTAT
* *
114658243 ATTTGCTTTTTGTATTTCAATAT
125 ATTTGCTTTTTGCAGTTCAATAT
114658266 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATATATGT
1 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATATAT-T
* *
114658331 ATATATATTTATATATATTATTATTTTTAATTACTTTATTTTAATAT-TTT-TT-TATTATATTT
65 ATATATATTTATATATAGTATTATTTCTAATTACTTTA-TTTAATATCTTTATTATATTATATTT
114658393 GCTTTTTGCAGTTCAATAT
129 GCTTTTTGCAGTTCAATAT
* *
114658412 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTAATATATATCTATATAT-TTA
1 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATATATTA
114658476 TATATA
66 TATATA
114658482 GTATTATTAT
Statistics
Matches: 201, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
144 8 0.04
145 1 0.00
146 86 0.43
147 2 0.01
148 36 0.18
149 8 0.04
150 38 0.19
151 2 0.01
152 20 0.10
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (147 bp):
TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATATATTA
TATATATTTATATATAGTATTATTTCTAATTACTTTATTTAATATCTTTATTATATTATATTTGC
TTTTTGCAGTTCAATAT
Found at i:114658492 original size:19 final size:20
Alignment explanation
Indices: 114658430--114658492 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 20
114658420 TTATCATTAT
* *
114658430 TATTATTAATAT-TAGTGTA
1 TATTATTTATATATAGTATA
*
114658449 TATT-TTTA-ATATA-TATC
1 TATTATTTATATATAGTATA
114658466 TATATATTTATATATAGTAT-
1 TAT-TATTTATATATAGTATA
114658486 TATTATT
1 TATTATT
114658493 AATTACTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
17 7 0.19
18 6 0.17
19 12 0.33
20 8 0.22
21 3 0.08
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
TATTATTTATATATAGTATA
Found at i:114658562 original size:146 final size:144
Alignment explanation
Indices: 114658116--114658542 Score: 400
Period size: 146 Copynumber: 2.9 Consensus size: 144
114658106 TTATTATTTA
* * * * * * * *
114658116 TATTATTATTATTATTAATATTA-TATATATTAGTGTATTTTTATTTTATATGTATATGTATATA
1 TATTACTATTATCATTATTATTATTA-ATATTAGTGTA-TATT-TTTAATATATATCTATATATA
* * * * * * *
114658180 TATATTTATATTTATATATAGTATTATTTCTAATTACTTTA-TTTAATATCTTTATTATATTATA
63 TGTATATATATTTATATATATTATTATTTTTAATTACATTACATTAATA--TTTCTT-TATTATA
* * *
114658244 TTTGCTTTTTGTATTTCAATAT
125 TTTGC-TTAT-TAGTTCAATAG
* *
114658266 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATATATGT
1 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTAATATATATCTATATATATGT
* ** *
114658331 ATATATATTTATATATATTATTATTTTTAATTACTTTATTTTAATATTTTTTTATTATATTTGCT
66 ATATATATTTATATATATTATTATTTTTAATTACATTACATTAATATTTCTTTATTATATTTGCT
* *
114658396 TTTTGCAGTTCAATAT
131 TATT--AGTTCAATAG
114658412 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTAATATATATCTATATAT-T-T
1 TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTAATATATATCTATATATATGT
114658475 ATATATAGTATTAT-TATTAATTACTTTATTTTTATATTATCATTACATT-ATATTTGCTTT-TT
66 ATATATA-T-TTATATA-T-ATTA--TTATTTTTA-ATTA-CATTACATTAATATTT-CTTTATT
114658537 ATATTT
122 ATATTT
114658543 CATTATTGTT
Statistics
Matches: 243, Mismatches: 21, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
144 9 0.04
145 8 0.03
146 85 0.35
147 9 0.04
148 53 0.22
149 19 0.08
150 49 0.20
151 11 0.05
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (144 bp):
TATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTAATATATATCTATATATATGT
ATATATATTTATATATATTATTATTTTTAATTACATTACATTAATATTTCTTTATTATATTTGCT
TATTAGTTCAATAG
Found at i:114658786 original size:17 final size:18
Alignment explanation
Indices: 114658759--114658805 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
114658749 CTTATCACTC
114658759 ATCTA-TTATATTTC-TT
1 ATCTATTTATATTTCATT
114658775 ATCTATTTATATTGTCATT
1 ATCTATTTATATT-TCATT
114658794 AT-TATTT-TATTT
1 ATCTATTTATATTT
114658806 TAAGTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.21
17 11 0.39
18 7 0.25
19 4 0.14
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (18 bp):
ATCTATTTATATTTCATT
Found at i:114663884 original size:98 final size:96
Alignment explanation
Indices: 114663730--114663931 Score: 264
Period size: 98 Copynumber: 2.1 Consensus size: 96
114663720 AATTTTACTT
* * *
114663730 TATATTTTTAATTCATAACTCCATTATTTATATAAATAAATAATAAATATGTAATTATATAATTA
1 TATATTTTTAATTAATAACTCCATTATTTATAGAAAAAAATAATAAATATGTAATTATATAATTA
* *
114663795 AAAAATATAGATTTATATATTTTATTATGTTAAA
66 AAAAATAT---TTTATATATATCATTATGTTAAA
* * * *
114663829 TATATTTTTAATTAATATCTCC-TT-TTTATAGAAACAAAATAATGACTTTGTAATTATATAATT
1 TATATTTTTAATTAATAACTCCATTATTTATAGAAA-AAAATAATAAATATGTAATTATATAATT
*
114663892 AAAAAATATTTTTTATATATCATTATGTTAAA
65 AAAAAATATTTTATATATATCATTATGTTAAA
114663924 TATATTTT
1 TATATTTT
114663932 ATTTTTTAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
95 28 0.30
97 9 0.10
98 35 0.38
99 20 0.22
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (96 bp):
TATATTTTTAATTAATAACTCCATTATTTATAGAAAAAAATAATAAATATGTAATTATATAATTA
AAAAATATTTTATATATATCATTATGTTAAA
Found at i:114664391 original size:29 final size:28
Alignment explanation
Indices: 114664359--114664414 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
114664349 TATAAATAAA
*
114664359 ATAACTATTTAT-TGAAAAATATGTTTAAC
1 ATAACTATATATAT-AAAAATAT-TTTAAC
*
114664388 ATAATTATATATATAAAAATATTTTAA
1 ATAACTATATATATAAAAATATTTTAA
114664415 TTATATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 18 0.75
30 1 0.04
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (28 bp):
ATAACTATATATATAAAAATATTTTAAC
Found at i:114664553 original size:21 final size:21
Alignment explanation
Indices: 114664510--114664553 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
114664500 AATTAAAAGT
*
114664510 AAAAATTAGAAATTAAAATAA
1 AAAAATTAGAAATTAAAACAA
*
114664531 AAAAATTA-AAACTTGAAACAA
1 AAAAATTAGAAA-TTAAAACAA
114664552 AA
1 AA
114664554 TTAAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAAATTAGAAATTAAAACAA
Found at i:114664636 original size:21 final size:21
Alignment explanation
Indices: 114664611--114664659 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
114664601 TTGCCTTTCA
*
114664611 GATTTCGGATTTTGAA-TTTTG
1 GATTTCAGATTTT-AAGTTTTG
*
114664632 GATTTAAGATTTTAAGTTTTG
1 GATTTCAGATTTTAAGTTTTG
*
114664653 AATTTCA
1 GATTTCA
114664660 AGTTTCGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (21 bp):
GATTTCAGATTTTAAGTTTTG
Found at i:114670191 original size:25 final size:27
Alignment explanation
Indices: 114670154--114670207 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
114670144 TCAAACATGC
114670154 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
114670180 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
114670206 AT
1 AT
114670208 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:114671732 original size:26 final size:26
Alignment explanation
Indices: 114671694--114671747 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
114671684 CATGATATTC
114671694 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
114671720 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
114671746 TT
1 TT
114671748 GTCAATTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:114675207 original size:2 final size:2
Alignment explanation
Indices: 114675200--114675238 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
114675190 AAGATAATAG
114675200 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
114675239 GTATTTATCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:114675686 original size:101 final size:99
Alignment explanation
Indices: 114675564--114675752 Score: 342
Period size: 101 Copynumber: 1.9 Consensus size: 99
114675554 GCACATGTAT
114675564 TATTATTAACTTTCATTTGGGCCAATCAATATTAACATAACTTAAGTTACATGCACACAACCTTT
1 TATTATTAACTTTCATTTGGGCCAATCAATATTAACATAACTTAAGTTACATGCACACAACCTTT
114675629 TATATTTTAAAACAAAATAATTTATTCAATGTGCAA
66 TATA-TTTAAAA-AAAATAATTTATTCAATGTGCAA
* *
114675665 TATTATTAACTTTCATTTGGGCCAATCAATATTAACATAACTTATGTTACATGCACACAATCTTT
1 TATTATTAACTTTCATTTGGGCCAATCAATATTAACATAACTTAAGTTACATGCACACAACCTTT
114675730 TATATTTAAAAAAAATAATTTAT
66 TATATTTAAAAAAAATAATTTAT
114675753 ACAAAAAAAA
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
99 12 0.14
100 7 0.08
101 67 0.78
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (99 bp):
TATTATTAACTTTCATTTGGGCCAATCAATATTAACATAACTTAAGTTACATGCACACAACCTTT
TATATTTAAAAAAAATAATTTATTCAATGTGCAA
Found at i:114675985 original size:24 final size:24
Alignment explanation
Indices: 114675958--114676006 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
114675948 GAAATAAAGA
114675958 ATGTGAAATGATCTGTATGTAATG
1 ATGTGAAATGATCTGTATGTAATG
*
114675982 ATGTGAAATGATTTGTATGTAATG
1 ATGTGAAATGATCTGTATGTAATG
114676006 A
1 A
114676007 AACGGAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.39
Consensus pattern (24 bp):
ATGTGAAATGATCTGTATGTAATG
Found at i:114677120 original size:25 final size:25
Alignment explanation
Indices: 114677079--114677129 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
114677069 AAGTTGTAAA
114677079 TAAAAAAAATCTCTAGA-AATTTTC
1 TAAAAAAAATCTCTAGAGAATTTTC
* *
114677103 TAAAATAATATCTTTAGAGAATTTTC
1 TAAAA-AAAATCTCTAGAGAATTTTC
114677129 T
1 T
114677130 CTTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 10 0.43
26 8 0.35
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.39
Consensus pattern (25 bp):
TAAAAAAAATCTCTAGAGAATTTTC
Found at i:114677247 original size:16 final size:16
Alignment explanation
Indices: 114677236--114677296 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
114677226 TTAATTACTT
114677236 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* * *
114677252 TAATATT-TATCAAAA
1 TAATATTAAATTAATA
* *
114677267 TAAATATTAGATTAAATT
1 T-AATATTAAATT-AATA
114677285 TAATATTAAATT
1 TAATATTAAATT
114677297 TATTAAAGTA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
15 6 0.18
16 13 0.38
17 12 0.35
18 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:114677298 original size:38 final size:36
Alignment explanation
Indices: 114677240--114677325 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 36
114677230 TTACTTTAAT
*
114677240 ATTAAA-TTAATATAATATTTATCAAAATAAATATTAG
1 ATTAAATTTAATATAATATTTATCAAAAT-AATA-GAG
* *
114677277 ATTAAATTTAATATTAA-ATTTATTAAAGTAATAGAG
1 ATTAAATTTAATA-TAATATTTATCAAAATAATAGAG
*
114677313 ATTAAATATAATA
1 ATTAAATTTAATA
114677326 CTAAGATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
36 14 0.33
37 10 0.23
38 16 0.37
39 3 0.07
ACGTcount: A:0.53, C:0.01, G:0.05, T:0.41
Consensus pattern (36 bp):
ATTAAATTTAATATAATATTTATCAAAATAATAGAG
Found at i:114677387 original size:37 final size:37
Alignment explanation
Indices: 114677340--114677416 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
114677330 GATAATCACT
114677340 TTAATATTAAA-TTAATAAAAATACTATTAAAATAAATA
1 TTAATATTAAATTTAATAAAAA-ACTATTAAAAT-AATA
* **
114677378 TTAAT-TTAAATTTAGTATTAAACTATTAAAATAATA
1 TTAATATTAAATTTAATAAAAAACTATTAAAATAATA
114677414 TTA
1 TTA
114677417 TTTTTGAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 7 0.20
37 16 0.46
38 12 0.34
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (37 bp):
TTAATATTAAATTTAATAAAAAACTATTAAAATAATA
Found at i:114683613 original size:8 final size:8
Alignment explanation
Indices: 114683600--114683640 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
114683590 TTTGTTTATA
114683600 ATAATAAT
1 ATAATAAT
114683608 ATAATAAT
1 ATAATAAT
114683616 ATAATATAT
1 ATAATA-AT
114683625 ATAAGTAA-
1 ATAA-TAAT
114683633 ATAATAAT
1 ATAATAAT
114683641 TACTAGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
7 3 0.10
8 18 0.60
9 7 0.23
10 2 0.07
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
ATAATAAT
Found at i:114686546 original size:19 final size:20
Alignment explanation
Indices: 114686518--114686555 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
114686508 AAATTTGAAT
*
114686518 TTAAATTATTTT-TATTATA
1 TTAAAATATTTTATATTATA
114686537 TTAAAATATTTTATATTAT
1 TTAAAATATTTTATATTAT
114686556 CAAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAAAATATTTTATATTATA
Found at i:114688521 original size:11 final size:11
Alignment explanation
Indices: 114688505--114688549 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
114688495 CACACAATAG
114688505 TTCTCTC-ACAA
1 TTCTCTCTA-AA
114688516 TTCTCTCTAAA
1 TTCTCTCTAAA
*
114688527 TTCTTTCTAAA
1 TTCTCTCTAAA
114688538 TTCTCTC-AAA
1 TTCTCTCTAAA
114688548 TT
1 TT
114688550 TCTTTCAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 5 0.16
11 25 0.81
12 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (11 bp):
TTCTCTCTAAA
Found at i:114688539 original size:22 final size:22
Alignment explanation
Indices: 114688514--114688555 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
114688504 GTTCTCTCAC
114688514 AATTCTCTCTAAA-TTCTTTCTA
1 AATTCTCTC-AAATTTCTTTCTA
114688536 AATTCTCTCAAATTTCTTTC
1 AATTCTCTCAAATTTCTTTC
114688556 AATTTTTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (22 bp):
AATTCTCTCAAATTTCTTTCTA
Found at i:114690394 original size:18 final size:18
Alignment explanation
Indices: 114690371--114690414 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
114690361 ATGCCAAGTG
*
114690371 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
*
114690389 TGTATCCTAACCCTTTTA
1 TGTATCCTAACCCTTATA
*
114690407 TGTTTCCT
1 TGTATCCT
114690415 TTTCTCAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:114690696 original size:21 final size:22
Alignment explanation
Indices: 114690662--114690705 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
114690652 CCTCAACCAG
*
114690662 ATCCCCTACCGGAGGAACCACA
1 ATCCCCTACCGGAGCAACCACA
*
114690684 ATCCCC-ACTGGAGCAACCACA
1 ATCCCCTACCGGAGCAACCACA
114690705 A
1 A
114690706 CTCTCGCCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.34, C:0.41, G:0.16, T:0.09
Consensus pattern (22 bp):
ATCCCCTACCGGAGCAACCACA
Found at i:114691080 original size:128 final size:128
Alignment explanation
Indices: 114690819--114691319 Score: 837
Period size: 128 Copynumber: 3.9 Consensus size: 128
114690809 TTGAAGAAAC
* * *
114690819 TTTTTTATATAG-TTTCATATAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTT
1 TTTTTTATATAGTTTTAAT-TAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACCTTACTT
* *
114690883 TTTTAATTTTATTAAAATAAATCTTCTTTTAAATTAGCCAACATTTTTATTATTTTTATATTTA
65 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
114690947 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACCTTACTTT
1 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACCTTAC-TT
114691012 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
65 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
* *
114691076 -TTTTTATATAGTTTTAATTAATAAAATAAAAGTTCTTTTTAATATTTTAATTGTACTTTACTTT
1 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACCTTACTTT
* *
114691140 TTTAATTTTATTAAATTAAATGTTCTTTTAAATTAGCCAATATCTTTATTATTTTTATATTTA
66 TTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
*
114691203 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTATA-CTCTACTT
1 TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACCT-TACTT
* *
114691267 TTTTAATTTTAATACAATAAATGTTCTTTTAAATTAGCCAATAATTTTTATTA
65 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAAT-ATTTTTATTA
114691320 AAATAAATGT
Statistics
Matches: 352, Mismatches: 16, Indels: 9
0.93 0.04 0.02
Matches are distributed among these distances:
127 65 0.18
128 209 0.59
129 78 0.22
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (128 bp):
TTTTTTATATAGTTTTAATTAATAAAATAAAAGTTATTTTTAATATTTTAATTGTACCTTACTTT
TTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTATTATTTTTATATTTA
Found at i:114693321 original size:41 final size:41
Alignment explanation
Indices: 114693263--114693344 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
114693253 TAACACGTTG
*
114693263 TAGTTAATCCCGATCATGATGCTATGTTGTTTCAATGCAGC
1 TAGTTAACCCCGATCATGATGCTATGTTGTTTCAATGCAGC
*
114693304 TAGTTAACCCCGTTCATGATGCTATGTTGTTTCAATGCAGC
1 TAGTTAACCCCGATCATGATGCTATGTTGTTTCAATGCAGC
114693345 AAGAAAACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (41 bp):
TAGTTAACCCCGATCATGATGCTATGTTGTTTCAATGCAGC
Found at i:114694617 original size:16 final size:16
Alignment explanation
Indices: 114694594--114694639 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
114694584 TACATCTTAG
*
114694594 AAAA-ATAAAGAATAC
1 AAAACATAAAGAAAAC
114694609 AAAACATAAAGAAAAC
1 AAAACATAAAGAAAAC
114694625 AAAACATAAA-AAAAC
1 AAAACATAAAGAAAAC
114694640 CCAAAACTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 9 0.31
16 20 0.69
ACGTcount: A:0.76, C:0.11, G:0.04, T:0.09
Consensus pattern (16 bp):
AAAACATAAAGAAAAC
Found at i:114702414 original size:24 final size:24
Alignment explanation
Indices: 114702387--114702434 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
114702377 AAAGTACAAA
114702387 ATCGATACTTAATAGACAAAACTT
1 ATCGATACTTAATAGACAAAACTT
*
114702411 ATCGATACTTAATAGGCAAAACTT
1 ATCGATACTTAATAGACAAAACTT
114702435 TCATTGGCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (24 bp):
ATCGATACTTAATAGACAAAACTT
Found at i:114702919 original size:126 final size:126
Alignment explanation
Indices: 114702694--114703002 Score: 474
Period size: 126 Copynumber: 2.5 Consensus size: 126
114702684 AGTCTAAGGC
* * * * *
114702694 TTTTTCAGATGCTACTGTAGCAAAAGAGTGTCCACGTGAGAGCTTTTTTCCGTAATTTTGCTGAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTAAC
* *
114702759 AATACATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCATAAACATCTTCTCAAAATTAT
66 AATACATCCTTCTTGAAGCGTATTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
* * * *
114702820 TTTTTTAGATACTACTGTAGCAAAACAGCGTCTACGTGGGAGCTTTTTTTCGTAATTTTACTAAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTAAC
* * *
114702885 AGTGCATTCTTCTTGAAGCGTATTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
66 AATACATCCTTCTTGAAGCGTATTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
* *
114702946 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTTTTTTCCATAATT
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATT
114703003 AATTAATAGT
Statistics
Matches: 163, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 163 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (126 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTAAC
AATACATCCTTCTTGAAGCGTATTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
Found at i:114703151 original size:24 final size:24
Alignment explanation
Indices: 114703124--114703173 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
114703114 TTAATTTTTT
114703124 CCTTAAAAACACTAAAACC-CTAAA
1 CCTTAAAAAC-CTAAAACCACTAAA
*
114703148 CCTTAAAAGCCTAAAACCACTAAA
1 CCTTAAAAACCTAAAACCACTAAA
114703172 CC
1 CC
114703174 CTAATCCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.50, C:0.32, G:0.02, T:0.16
Consensus pattern (24 bp):
CCTTAAAAACCTAAAACCACTAAA
Found at i:114703176 original size:16 final size:17
Alignment explanation
Indices: 114703127--114703177 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
114703117 ATTTTTTCCT
*
114703127 TAAAAACACTAAAACCC
1 TAAAACCACTAAAACCC
* *
114703144 T-AAACC-TTAAAAGCC
1 TAAAACCACTAAAACCC
114703159 TAAAACCACT-AAACCC
1 TAAAACCACTAAAACCC
114703175 TAA
1 TAA
114703178 TCCCAAAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
15 8 0.30
16 17 0.63
17 2 0.07
ACGTcount: A:0.53, C:0.29, G:0.02, T:0.16
Consensus pattern (17 bp):
TAAAACCACTAAAACCC
Found at i:114703274 original size:171 final size:173
Alignment explanation
Indices: 114703027--114703380 Score: 574
Period size: 172 Copynumber: 2.1 Consensus size: 173
114703017 TTAATTAATA
*
114703027 AACCCTAAAAAACCCTAAACCCTAATTTAATTTATTTTTTTAAATTTCATAGTTAATTTAATTAA
1 AACCCT-AAAAACCCTAAACCCTAATTTAATTGATTTTTTTAAATTTCATAGTTAATTTAATTAA
*
114703092 TTAATCCTCAACTCTAATTAAATTAATTTTT-TCCTT-AAAAACACTAAAACCCTAAACCTTAAA
65 TTAACCCTCAACTCTAATTAAATTAATTTTTCT-CTTAAAAAACACTAAAACCCTAAACCTTAAA
* *
114703155 AGCC-TAAAACCACTAAACCCTAATCCC-AAAACAATCAAAAACCCT
129 AACCAT-AAACCACTAAACCCTAA-CCCTAAAACAATAAAAAACCCT
*
114703200 AACCCTAAAAACCCTAAACTCTAATTTAATTGATTTTTTT-AATTTCATAGTTAATTTAATTAAT
1 AACCCTAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAAATTTCATAGTTAATTTAATTAAT
* *
114703264 TAACCCTCAACTCTAATTAAATTAATTTTTCTCTTAAAAAATACTAAAACCCTAAACTTTAAAAA
66 TAACCCTCAACTCTAATTAAATTAATTTTTCTCTTAAAAAACACTAAAACCCTAAACCTTAAAAA
114703329 CCATAAACCACTAAACCCTAACCCTAAAACAATAAAAAACCCT
131 CCATAAACCACTAAACCCTAACCCTAAAACAATAAAAAACCCT
114703372 AACCCTAAA
1 AACCCTAAA
114703381 GAAAAGGGGG
Statistics
Matches: 170, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
171 59 0.35
172 104 0.61
173 7 0.04
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.32
Consensus pattern (173 bp):
AACCCTAAAAACCCTAAACCCTAATTTAATTGATTTTTTTAAATTTCATAGTTAATTTAATTAAT
TAACCCTCAACTCTAATTAAATTAATTTTTCTCTTAAAAAACACTAAAACCCTAAACCTTAAAAA
CCATAAACCACTAAACCCTAACCCTAAAACAATAAAAAACCCT
Found at i:114704448 original size:32 final size:33
Alignment explanation
Indices: 114704412--114704482 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
114704402 TATCTTTTCC
114704412 AAATTTAGT-TATTAC-AATTTT-AACTAATATTT
1 AAATTT-GTATATTACAAATTTTGAA-TAATATTT
114704444 AAATTTGTATATTACAAATTTTGAATAATATTT
1 AAATTTGTATATTACAAATTTTGAATAATATTT
114704477 AAATTT
1 AAATTT
114704483 TAACAATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
31 2 0.06
32 12 0.33
33 20 0.56
34 2 0.06
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (33 bp):
AAATTTGTATATTACAAATTTTGAATAATATTT
Found at i:114717909 original size:48 final size:48
Alignment explanation
Indices: 114717842--114717946 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 48
114717832 ACACGGGTAG
* * *
114717842 ACCACACGCCTGTGTCTATTTAACAGACTGTAACACGACCTAAGCCAC
1 ACCACACGGCTATGTCTATTTAACAGACTCTAACACGACCTAAGCCAC
*
114717890 ACCACACGGCTATGTCTATTTAGCAGACTCTAACACGACCTAAGCCAC
1 ACCACACGGCTATGTCTATTTAACAGACTCTAACACGACCTAAGCCAC
* *
114717938 CCCATACGG
1 ACCACACGG
114717947 GCGTGTCACA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.20
Consensus pattern (48 bp):
ACCACACGGCTATGTCTATTTAACAGACTCTAACACGACCTAAGCCAC
Found at i:114721297 original size:8 final size:8
Alignment explanation
Indices: 114721284--114721327 Score: 79
Period size: 8 Copynumber: 5.5 Consensus size: 8
114721274 CCAGACTTTG
114721284 ACGGATTC
1 ACGGATTC
114721292 ACGGATTC
1 ACGGATTC
114721300 ACGGATTC
1 ACGGATTC
*
114721308 ACAGATTC
1 ACGGATTC
114721316 ACGGATTC
1 ACGGATTC
114721324 ACGG
1 ACGG
114721328 CACATTGTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (8 bp):
ACGGATTC
Found at i:114721403 original size:21 final size:21
Alignment explanation
Indices: 114721367--114721425 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
114721357 TGATCAGTAT
*
114721367 ACGACACATAA-GTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
* *
114721387 ACTACACACAAGGTGCCTGAT
1 ACGACACACAAGGTGCCTGAA
* *
114721408 GCGACACACGAGGTGCCT
1 ACGACACACAAGGTGCCT
114721426 CAAATACGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.15
Consensus pattern (21 bp):
ACGACACACAAGGTGCCTGAA
Found at i:114724618 original size:26 final size:26
Alignment explanation
Indices: 114724580--114724663 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
114724570 CATGAAATTC
* *
114724580 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
114724606 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
114724632 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
114724658 TTATCA
1 TTATCA
114724664 ATTTGTACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:114726048 original size:25 final size:27
Alignment explanation
Indices: 114726011--114726063 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
114726001 TCAAACATGC
114726011 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
114726037 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
114726063 A
1 A
114726064 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:114728282 original size:6 final size:6
Alignment explanation
Indices: 114728269--114728298 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
114728259 GTTTCTATTC
114728269 TTTG-T TTTGTT TTTGTT TTTGTT TTTGTT T
1 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT T
114728299 CTTTTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (6 bp):
TTTGTT
Found at i:114728305 original size:18 final size:17
Alignment explanation
Indices: 114728258--114728305 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
114728248 GTTTCAATTC
*
114728258 TGTTTCTATTCTTTGTTT
1 TGTTTCT-TTTTTTGTTT
114728276 TGTTT-TTGTTTTTGTTTT
1 TGTTTCTT-TTTTTG-TTT
114728294 TGTTTCTTTTTT
1 TGTTTCTTTTTT
114728306 ATATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 1 0.04
17 6 0.23
18 17 0.65
19 2 0.08
ACGTcount: A:0.02, C:0.06, G:0.12, T:0.79
Consensus pattern (17 bp):
TGTTTCTTTTTTTGTTT
Found at i:114728837 original size:3 final size:3
Alignment explanation
Indices: 114728770--114728822 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
114728760 TTACTTTATT
114728770 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
114728818 TAA TA
1 TAA TA
114728823 TAAAACCATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:114728868 original size:15 final size:15
Alignment explanation
Indices: 114728848--114728879 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
114728838 GGTTAATAAT
114728848 TATAATATTTATATA
1 TATAATATTTATATA
*
114728863 TATAATATTTATTTA
1 TATAATATTTATATA
114728878 TA
1 TA
114728880 ACTTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATATTTATATA
Found at i:114731936 original size:26 final size:26
Alignment explanation
Indices: 114731900--114732035 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
114731890 CATGATATTC
114731900 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
114731926 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114731952 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114731978 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114732004 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114732030 TTATCA
1 TTATCA
114732036 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114734144 original size:22 final size:24
Alignment explanation
Indices: 114734086--114734146 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
114734076 ATTATCTATT
114734086 ATTTAAAAATTAAGAGAAATTATA
1 ATTTAAAAATTAAGAGAAATTATA
* * *
114734110 AGTAACAATAATTAA-AGATA-TATA
1 ATTTA-AA-AATTAAGAGAAATTATA
114734134 ATTTAAAAATTAA
1 ATTTAAAAATTAA
114734147 TTAAAAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
22 6 0.20
23 2 0.07
24 10 0.33
25 6 0.20
26 6 0.20
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (24 bp):
ATTTAAAAATTAAGAGAAATTATA
Found at i:114734803 original size:7 final size:7
Alignment explanation
Indices: 114734791--114734816 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
114734781 AAAAAAATGT
114734791 TTTAAAA
1 TTTAAAA
114734798 TTTAAAA
1 TTTAAAA
114734805 TTTAAAA
1 TTTAAAA
114734812 TTTAA
1 TTTAA
114734817 TCTAATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTAAAA
Found at i:114736143 original size:60 final size:59
Alignment explanation
Indices: 114736070--114736185 Score: 171
Period size: 60 Copynumber: 1.9 Consensus size: 59
114736060 AAGAAATTAA
* *
114736070 ATGAACTTGGCAACTTTTCACACA-TAGGGTTTGAACTTTTTTTTTTGTCCAAGTTAGGCC
1 ATGAACTTGGCAACTGTTCACACATTAGGGCTTGAAC--TTTTTTTTGTCCAAGTTAGGCC
* *
114736130 ATGAATTTGGCAACTGTTCTCACATTAGGGCTTGAACTTTTTTTTGTCCAAGTTAG
1 ATGAACTTGGCAACTGTTCACACATTAGGGCTTGAACTTTTTTTTGTCCAAGTTAG
114736186 TTTTTTAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 19 0.37
60 21 0.41
61 11 0.22
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (59 bp):
ATGAACTTGGCAACTGTTCACACATTAGGGCTTGAACTTTTTTTTGTCCAAGTTAGGCC
Found at i:114743759 original size:3 final size:3
Alignment explanation
Indices: 114743742--114743794 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
114743732 TTTATGGTTT
* * *
114743742 AAG AAG -AG AAA AAG AAG AA- AAG GAG AAG AAG AAG AAG AAG AAA AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
114743788 GAG AAG A
1 AAG AAG A
114743795 GAAATAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 4 0.10
3 36 0.90
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:114744412 original size:3 final size:3
Alignment explanation
Indices: 114744406--114744452 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
114744396 TCTTCTTCTT
* *
114744406 CTC CTC CTC CTC CTC CTC TTC CTC CTC CTC TTC CTC CTC CTC CTC CT
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CT
114744453 TTGTTATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (3 bp):
CTC
Found at i:114745092 original size:72 final size:72
Alignment explanation
Indices: 114744975--114745115 Score: 255
Period size: 72 Copynumber: 2.0 Consensus size: 72
114744965 ATAACCCTCT
* * *
114744975 TGCTGATTCGAGTACTAAGAAGGTCCGTTTTAAGGAGTCGGTGACTAATCTAAAGGATGTGATGG
1 TGCTGATTCGAGTACTAAGAAGGTCCATTTTAAAGAGTCGGTGACTAATCCAAAGGATGTGATGG
114745040 TTGTTCC
66 TTGTTCC
114745047 TGCTGATTCGAGTACTAAGAAGGTCCATTTTAAAGAGTCGGTGACTAATCCAAAGGATGTGATGG
1 TGCTGATTCGAGTACTAAGAAGGTCCATTTTAAAGAGTCGGTGACTAATCCAAAGGATGTGATGG
114745112 TTGT
66 TTGT
114745116 GGATTTAGCG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (72 bp):
TGCTGATTCGAGTACTAAGAAGGTCCATTTTAAAGAGTCGGTGACTAATCCAAAGGATGTGATGG
TTGTTCC
Found at i:114747134 original size:43 final size:42
Alignment explanation
Indices: 114747087--114747225 Score: 107
Period size: 43 Copynumber: 3.1 Consensus size: 42
114747077 GGGATCACAG
114747087 ATCGAACCCGATAGCCTAGCTATGATCTTACACAATGTCTCAT
1 ATCGAACCCGATAGCCTAGCTATGATCTTACA-AATGTCTCAT
* * * * * * *** * *
114747130 ATCGATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAG
1 ATCGA-ACC----CGATAGCCTAGCTATGATCTTACAAATG-TCTCAT
114747178 ATCGAACCCGATAGCCTAGCTATGATCTTACATAATGTCTCAT
1 ATCGAACCCGATAGCCTAGCTATGATCTTACA-AATGTCTCAT
114747221 ATCGA
1 ATCGA
114747226 TGCCAATGCC
Statistics
Matches: 67, Mismatches: 22, Indels: 14
0.65 0.21 0.14
Matches are distributed among these distances:
43 33 0.49
44 3 0.04
47 3 0.04
48 28 0.42
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
ATCGAACCCGATAGCCTAGCTATGATCTTACAAATGTCTCAT
Found at i:114747197 original size:91 final size:91
Alignment explanation
Indices: 114747042--114747273 Score: 428
Period size: 91 Copynumber: 2.5 Consensus size: 91
114747032 AACATAGTAA
114747042 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAACCCGATAGCCTAGC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAACCCGATAGCCTAGC
114747107 TATGATCTTACACAATGTCTCATATC
66 TATGATCTTACACAATGTCTCATATC
114747133 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAACCCGATAGCCTAGC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAACCCGATAGCCTAGC
*
114747198 TATGATCTTACATAATGTCTCATATC
66 TATGATCTTACACAATGTCTCATATC
* * *
114747224 GATGCCAATGCCATATCCCAAATATGGTCTTACATGAGATCACATATCGA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGA
114747274 TGCCAATGCC
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 137 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (91 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAACCCGATAGCCTAGC
TATGATCTTACACAATGTCTCATATC
Found at i:114747346 original size:47 final size:48
Alignment explanation
Indices: 114747042--114747360 Score: 286
Period size: 48 Copynumber: 6.9 Consensus size: 48
114747032 AACATAGTAA
*
114747042 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * * * *** *
114747090 GA-ACC----CGATAGCCTAGCTATGATCTTACACAATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACA-TGGGATCACATATC
*
114747133 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * * * ** *
114747181 GA-ACC----CGATAGCCTAGCTATGATCTTACATAATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACAT-GGGATCACATATC
* *
114747224 GATGCCAATGCCATATCCCAAATATGGTCTTACATGAGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* *
114747272 GATGCCAATGCCATATCTCAGATATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* *
114747320 GATG-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCA
114747361 AAGATAACCC
Statistics
Matches: 207, Mismatches: 50, Indels: 29
0.72 0.17 0.10
Matches are distributed among these distances:
43 57 0.28
44 6 0.03
47 39 0.19
48 105 0.51
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:114762641 original size:14 final size:14
Alignment explanation
Indices: 114762622--114762650 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
114762612 AGCATACATT
114762622 TGCTAAATACTAAC
1 TGCTAAATACTAAC
114762636 TGCTAAATACTAAC
1 TGCTAAATACTAAC
114762650 T
1 T
114762651 AAAAGTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (14 bp):
TGCTAAATACTAAC
Found at i:114776247 original size:26 final size:26
Alignment explanation
Indices: 114776211--114776318 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
114776201 TGAAATTCCA
114776211 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
114776237 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
114776263 ATTATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
114776289 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
114776315 ATCA
1 ATCA
114776319 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:114778056 original size:31 final size:25
Alignment explanation
Indices: 114777987--114778042 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
114777977 ATCTAGCATC
*
114777987 CACTCGGACATAAGCTCGGAGCTAT
1 CACTCAGACATAAGCTCGGAGCTAT
114778012 CACTCAGACATAAGCTCGGAGCTAT
1 CACTCAGACATAAGCTCGGAGCTAT
114778037 CACTCA
1 CACTCA
114778043 TTGACACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (25 bp):
CACTCAGACATAAGCTCGGAGCTAT
Found at i:114788367 original size:27 final size:27
Alignment explanation
Indices: 114788327--114788438 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
114788317 AGGAAGCGTC
*
114788327 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
114788354 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
114788381 CTGGTGGCTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
114788409 TTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
114788435 CTGG
1 CTGG
114788439 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.68
28 16 0.23
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:114788433 original size:54 final size:54
Alignment explanation
Indices: 114788327--114788438 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
114788317 AGGAAGCGTC
* *
114788327 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
114788381 CTGGTGGCTTTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
114788435 CTGG
1 CTGG
114788439 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:114789516 original size:10 final size:10
Alignment explanation
Indices: 114789499--114789532 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
114789489 AGCCTGTAAA
114789499 TATTCTGAAT
1 TATTCTGAAT
*
114789509 TTTTCTGAAT
1 TATTCTGAAT
114789519 ATATTCTGAAT
1 -TATTCTGAAT
114789530 TAT
1 TAT
114789533 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:114796749 original size:29 final size:28
Alignment explanation
Indices: 114796711--114796813 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
114796701 GTGACGAGAT
* *
114796711 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
114796740 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
114796769 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
114796798 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
114796814 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:114797337 original size:13 final size:13
Alignment explanation
Indices: 114797319--114797348 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
114797309 CCTATTTTAG
114797319 GTCTCTTGGACTC
1 GTCTCTTGGACTC
114797332 GTCTCTTGGACTC
1 GTCTCTTGGACTC
114797345 GTCT
1 GTCT
114797349 TTTTTTGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.23, T:0.40
Consensus pattern (13 bp):
GTCTCTTGGACTC
Found at i:114799614 original size:27 final size:27
Alignment explanation
Indices: 114799574--114799685 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
114799564 AGGAAGCGTC
*
114799574 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
114799601 CTGGTGGCTCTGCCATATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
114799628 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
114799656 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
114799682 CTGG
1 CTGG
114799686 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 17 0.24
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:114799680 original size:54 final size:54
Alignment explanation
Indices: 114799577--114799683 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
114799567 AAGCGTCCTG
* * *
114799577 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATTTCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTA
* * *
114799631 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCT
114799684 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTA
Found at i:114805506 original size:40 final size:37
Alignment explanation
Indices: 114805438--114805530 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 37
114805428 ACCAGAATGG
*
114805438 CGACCAACGCCTCATCGGATAGTTCGAAGCAAATAAGTGA
1 CGACCAACGCCTCATCGGATAGTCCGAAGC--A-AAGTGA
* *
114805478 CGACCAACGTCTCATCGGCTAAG-CCGAAGCAAAGTGA
1 CGACCAACGCCTCATCGGAT-AGTCCGAAGCAAAGTGA
*
114805515 CGACCAATGCCTCATC
1 CGACCAACGCCTCATC
114805531 AAATCTATCC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
37 20 0.43
38 1 0.02
40 24 0.51
41 2 0.04
ACGTcount: A:0.32, C:0.30, G:0.22, T:0.16
Consensus pattern (37 bp):
CGACCAACGCCTCATCGGATAGTCCGAAGCAAAGTGA
Found at i:114812506 original size:26 final size:27
Alignment explanation
Indices: 114812477--114812532 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
114812467 TTTCCATATG
* *
114812477 ACCAATTCTTGTA-AA-CACTTCATACA
1 ACCAATT-TTGTATAACCAATTCATAAA
114812503 ACC-ATTTTGTATAACCAATTCATAAA
1 ACCAATTTTGTATAACCAATTCATAAA
114812529 ACCA
1 ACCA
114812533 TTCATCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 5 0.20
25 5 0.20
26 15 0.60
ACGTcount: A:0.41, C:0.25, G:0.04, T:0.30
Consensus pattern (27 bp):
ACCAATTTTGTATAACCAATTCATAAA
Found at i:114812683 original size:46 final size:46
Alignment explanation
Indices: 114812618--114812941 Score: 461
Period size: 46 Copynumber: 7.0 Consensus size: 46
114812608 TTATCTTAGA
* * * * * *
114812618 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCACTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
**
114812664 CATGTTGCCATGGTATCTTTCAACCATGGTCTCGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
114812710 CACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
114812756 CACGTTGCTATCGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
114812802 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* ** *
114812848 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
114812894 CATGTTGCTATAGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
114812940 CA
1 CA
114812942 GAAAGCACAC
Statistics
Matches: 249, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 245 0.98
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:114812935 original size:21 final size:21
Alignment explanation
Indices: 114812865--114812936 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
114812855 CCATGGTATC
**
114812865 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTATTCA
* *
114812886 TTTCATATCATGTTGCTATAGTATC-
1 TTTCA-ACCATGGT-CT-TA-T-TCA
114812911 TTTCAACCATGGTCTTATTCA
1 TTTCAACCATGGTCTTATTCA
114812932 TTTCA
1 TTTCA
114812937 TGTCAGAAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
20 2 0.05
21 11 0.28
22 8 0.21
23 4 0.10
24 8 0.21
25 5 0.13
26 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (21 bp):
TTTCAACCATGGTCTTATTCA
Found at i:114815056 original size:16 final size:16
Alignment explanation
Indices: 114815035--114815065 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
114815025 TGGAAAGATG
114815035 ATGAGAATTCTTCATT
1 ATGAGAATTCTTCATT
114815051 ATGAGAATTCTTCAT
1 ATGAGAATTCTTCAT
114815066 CTTTCCTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (16 bp):
ATGAGAATTCTTCATT
Found at i:114816048 original size:16 final size:17
Alignment explanation
Indices: 114816020--114816053 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
114816010 TAACCTGTAG
114816020 ACAATTCTGACTTAGCC
1 ACAATTCTGACTTAGCC
*
114816037 ACAATT-TGACTTGGCC
1 ACAATTCTGACTTAGCC
114816053 A
1 A
114816054 TGTGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (17 bp):
ACAATTCTGACTTAGCC
Found at i:114816499 original size:13 final size:13
Alignment explanation
Indices: 114816481--114816514 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
114816471 TAATTAGCAC
114816481 ATCATACATACAA
1 ATCATACATACAA
*
114816494 ATCATACATATAA
1 ATCATACATACAA
114816507 ATTCATAC
1 A-TCATAC
114816515 CAAACTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
ATCATACATACAA
Found at i:114817922 original size:21 final size:22
Alignment explanation
Indices: 114817876--114817922 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
114817866 TAAAACCCTA
*
114817876 ATTTCTCCTTTTTTTCTTTTCT
1 ATTTCTCCTTTCTTTCTTTTCT
*
114817898 -TTTCTTCTTTCTTTC-TTTCT
1 ATTTCTCCTTTCTTTCTTTTCT
114817918 ATTTC
1 ATTTC
114817923 GTTTGGTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.72
Consensus pattern (22 bp):
ATTTCTCCTTTCTTTCTTTTCT
Found at i:114817972 original size:15 final size:15
Alignment explanation
Indices: 114817960--114818003 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
114817950 TTTCTTTTGT
114817960 TTCTTTATTTTTTTA
1 TTCTTTATTTTTTTA
114817975 TTCTTTATTTCATTTTA
1 TTCTTTATTT--TTTTA
114817992 TTTCTTTCATTT
1 -TTCTTT-ATTT
114818004 ACTTACTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 10 0.40
17 5 0.20
18 6 0.24
19 4 0.16
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (15 bp):
TTCTTTATTTTTTTA
Found at i:114819565 original size:2 final size:2
Alignment explanation
Indices: 114819558--114819589 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
114819548 ATCCTTCTTT
114819558 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114819590 AAAATTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:114824934 original size:10 final size:10
Alignment explanation
Indices: 114824919--114824952 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
114824909 TTTTTAAAAG
114824919 AATTATAAAT
1 AATTATAAAT
114824929 AATTATAAAT
1 AATTATAAAT
114824939 AATTACT-AAT
1 AATTA-TAAAT
114824949 AATT
1 AATT
114824953 TTATTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 22 0.96
11 1 0.04
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (10 bp):
AATTATAAAT
Found at i:114841011 original size:13 final size:13
Alignment explanation
Indices: 114840993--114841020 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
114840983 CACTCAATAC
114840993 ATCATCTGTAAAA
1 ATCATCTGTAAAA
114841006 ATCATCTGTAAAA
1 ATCATCTGTAAAA
114841019 AT
1 AT
114841021 ATATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32
Consensus pattern (13 bp):
ATCATCTGTAAAA
Found at i:114842149 original size:28 final size:28
Alignment explanation
Indices: 114842092--114842165 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
114842082 TATAATCAAT
* *
114842092 TTTTATTATATTTTTCAATTTGTGTATTG
1 TTTTAATATATTTTT-TATTTGTGTATTG
* *
114842121 TTTTAATATATTTTTTATTTGTTTCTTG
1 TTTTAATATATTTTTTATTTGTGTATTG
114842149 TTTTAATAT-TTGTTTTA
1 TTTTAATATATT-TTTTA
114842166 AATATATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 2 0.05
28 24 0.60
29 14 0.35
ACGTcount: A:0.20, C:0.03, G:0.08, T:0.69
Consensus pattern (28 bp):
TTTTAATATATTTTTTATTTGTGTATTG
Found at i:114842199 original size:17 final size:17
Alignment explanation
Indices: 114842166--114842199 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
114842156 ATTTGTTTTA
**
114842166 AATATATTTTATTATTT
1 AATATATTTTAAAATTT
114842183 AATATATTTTAAAATTT
1 AATATATTTTAAAATTT
114842200 TTATTTAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
AATATATTTTAAAATTT
Found at i:114843291 original size:16 final size:16
Alignment explanation
Indices: 114843270--114843301 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
114843260 CTTTTAGTTT
114843270 GCATTTATTTCAATTA
1 GCATTTATTTCAATTA
114843286 GCATTTATTTCAATTA
1 GCATTTATTTCAATTA
114843302 AGTTTGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (16 bp):
GCATTTATTTCAATTA
Found at i:114843670 original size:3 final size:3
Alignment explanation
Indices: 114843664--114843711 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
114843654 GTTTTTTTTA
114843664 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
114843712 CGATATTACT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:114844570 original size:127 final size:127
Alignment explanation
Indices: 114844406--114844654 Score: 399
Period size: 127 Copynumber: 2.0 Consensus size: 127
114844396 TTTTTTAGAA
* * * * *
114844406 TTTCGTCCGCGTTTTCTAAACCTTGAAACAAAGGCGATGTTTGATGTTTAGAAATTCGAGGGATC
1 TTTCGTCCGCATTTTCTAAACCATGAAACAAAGGCGATGTTTGATGCTTAGAAATTCAAGAGATC
* *
114844471 GTGCCTTAATGTGTTGGGTTTCGATCTTTCGTTTGTTTAAATAATCAAACTTCCCTTCAAAT
66 GTGCCCTAATGTGTTGGGTTTCGATCTTTCGTTTGTCTAAATAATCAAACTTCCCTTCAAAT
*
114844533 TTTCGTCCTCATTTTCTAAACCATGAAACAAAGGCGATGTTTGATGCTTAGAAATTCAAGAGATC
1 TTTCGTCCGCATTTTCTAAACCATGAAACAAAGGCGATGTTTGATGCTTAGAAATTCAAGAGATC
* * *
114844598 GTGCCCTAATGTGTTGGGTTTCGTTCTTTCGTTTGTCTAAATAATCAGATTTCCCTT
66 GTGCCCTAATGTGTTGGGTTTCGATCTTTCGTTTGTCTAAATAATCAAACTTCCCTT
114844655 TTAAGTTTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
127 111 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (127 bp):
TTTCGTCCGCATTTTCTAAACCATGAAACAAAGGCGATGTTTGATGCTTAGAAATTCAAGAGATC
GTGCCCTAATGTGTTGGGTTTCGATCTTTCGTTTGTCTAAATAATCAAACTTCCCTTCAAAT
Found at i:114846264 original size:2 final size:2
Alignment explanation
Indices: 114846257--114846296 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
114846247 GTTTTATTCC
114846257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114846297 GTCCAGTTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114862481 original size:15 final size:15
Alignment explanation
Indices: 114862461--114862491 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
114862451 CTTGGTGCCT
114862461 TCTAATGTGCAACCA
1 TCTAATGTGCAACCA
114862476 TCTAATGTGCAACCA
1 TCTAATGTGCAACCA
114862491 T
1 T
114862492 AGTTATTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (15 bp):
TCTAATGTGCAACCA
Found at i:114863229 original size:15 final size:16
Alignment explanation
Indices: 114863211--114863243 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
114863201 TTTTACATTT
114863211 TTTTTA-TCAATTTGA
1 TTTTTATTCAATTTGA
*
114863226 TTTTTATTTAATTTGA
1 TTTTTATTCAATTTGA
114863242 TT
1 TT
114863244 ATCAATCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (16 bp):
TTTTTATTCAATTTGA
Found at i:114863625 original size:12 final size:12
Alignment explanation
Indices: 114863608--114863635 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
114863598 TATTTAAAAT
114863608 TTAATATTTTAA
1 TTAATATTTTAA
114863620 TTAATATTTTAA
1 TTAATATTTTAA
114863632 TTAA
1 TTAA
114863636 AAAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TTAATATTTTAA
Found at i:114865264 original size:105 final size:104
Alignment explanation
Indices: 114865072--114865383 Score: 365
Period size: 105 Copynumber: 3.0 Consensus size: 104
114865062 TTCTTCTCCC
* ** * * *
114865072 CTAATTGTGGTGGCTGCAGGGCTCTTTTCCCCAAGGTTATAATAGTGCAGACTCAATAGTTTTAT
1 CTAATTGTGGCGATTGCAGGGATCTTTTTCCCAAGGTTATAATA-TGTAGACTC-ATAGTTTTAT
*
114865137 ATCCTTTGTTTTGCATATTTGTGTATCTCCATGTATTTGGA
64 ATACTTTGTTTTGCATATTTGTGTATCTCCATGTATTTGGA
* ** * * * *
114865178 TTCTTTGTGGCGATTGCATGGATCTTTTTTCCAAGGTTATAATGATGTAGGCTCATAGTTTTGTA
1 CTAATTGTGGCGATTGCAGGGATCTTTTTCCCAAGGTTATAAT-ATGTAGACTCATAGTTTTATA
* *
114865243 TACTTTGCTTTGCATAATTGTGTATCTCCATGTATTTGGA
65 TACTTTGTTTTGCATATTTGTGTATCTCCATGTATTTGGA
* * ** *
114865283 CTAATTGTGGTGATTGCAGGGCTCTTTTTCCCAAGG-TATAATAAAATAGACTTATAGCTTTTAT
1 CTAATTGTGGCGATTGCAGGGATCTTTTTCCCAAGGTTATAAT-ATGTAGACTCATAG-TTTTAT
* *
114865347 ACACTTTGTTTTGCATATTTGTGTATCTGCATGTATT
64 ATACTTTGTTTTGCATATTTGTGTATCTCCATGTATT
114865384 ATTTTTGGGT
Statistics
Matches: 171, Mismatches: 33, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
104 16 0.09
105 114 0.67
106 40 0.23
107 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.44
Consensus pattern (104 bp):
CTAATTGTGGCGATTGCAGGGATCTTTTTCCCAAGGTTATAATATGTAGACTCATAGTTTTATAT
ACTTTGTTTTGCATATTTGTGTATCTCCATGTATTTGGA
Done.