Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 377 of 410
Found at i:114870282 original size:73 final size:73
Alignment explanation
Indices: 114870163--114870301 Score: 226
Period size: 73 Copynumber: 1.9 Consensus size: 73
114870153 TTACTATCAA
* *
114870163 CTAATTTATATTTTCAAGTATATCTTGATAACCTAACACGTGTCATGGTTTACACCAACCAATAA
1 CTAATTTATATTTTCAAGTATATCTTGATAACCTAACACCTGTCATGGTTTACACAAACCAATAA
114870228 AGAGGAAT
66 AGAGGAAT
**
114870236 CTAATTTATATTTTCAAGTA-AGTCTTGATAGTCTAACACCTGTCATGGTTTACACAAACCAATA
1 CTAATTTATATTTTCAAGTATA-TCTTGATAACCTAACACCTGTCATGGTTTACACAAACCAATA
114870300 AA
65 AA
114870302 AAGTTATTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 1 0.02
73 60 0.98
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (73 bp):
CTAATTTATATTTTCAAGTATATCTTGATAACCTAACACCTGTCATGGTTTACACAAACCAATAA
AGAGGAAT
Found at i:114870876 original size:10 final size:10
Alignment explanation
Indices: 114870847--114870878 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
114870837 ATATCTAGAA
*
114870847 TTCTCTTCAA
1 TTCTCTTCAT
114870857 TTCTCTTCAT
1 TTCTCTTCAT
114870867 TTCTCTTCAT
1 TTCTCTTCAT
114870877 TT
1 TT
114870879 TCATCAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.59
Consensus pattern (10 bp):
TTCTCTTCAT
Found at i:114872509 original size:47 final size:47
Alignment explanation
Indices: 114872455--114872627 Score: 139
Period size: 47 Copynumber: 3.5 Consensus size: 47
114872445 ATTGACGAAA
*
114872455 AAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTAT
1 AAGACCATAGTTGGACCATGGCAACATGTGATATGTGATTTCCGTAT
* * * * * * ** * *
114872502 AAGACCATAGTTGGGCTATGGCATCGGAGAGATGTGGCTAAGACGAATTGACGGAA
1 AAGACCATAGTTGGACCATGG---C--A-ACATGT-GATATG-TG-ATTTCCGTAT
*
114872558 AAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTAT
1 AAGACCATAGTTGGACCATGGCAACATGTGATATGTGATTTCCGTAT
* *
114872605 AAGACCATAGTTGGGCTATGGCA
1 AAGACCATAGTTGGACCATGGCA
114872628 TCGGAGAGAT
Statistics
Matches: 92, Mismatches: 25, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
47 44 0.48
48 1 0.01
49 4 0.04
50 6 0.07
51 1 0.01
52 1 0.01
53 6 0.07
54 4 0.04
55 1 0.01
56 24 0.26
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (47 bp):
AAGACCATAGTTGGACCATGGCAACATGTGATATGTGATTTCCGTAT
Found at i:114872615 original size:103 final size:103
Alignment explanation
Indices: 114872436--114872640 Score: 401
Period size: 103 Copynumber: 2.0 Consensus size: 103
114872426 CGTTCAGTGA
114872436 CTAAGACGAATTGACGAAAAAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTA
1 CTAAGACGAATTGACGAAAAAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTA
114872501 TAAGACCATAGTTGGGCTATGGCATCGGAGAGATGTGG
66 TAAGACCATAGTTGGGCTATGGCATCGGAGAGATGTGG
*
114872539 CTAAGACGAATTGACGGAAAAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTA
1 CTAAGACGAATTGACGAAAAAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTA
114872604 TAAGACCATAGTTGGGCTATGGCATCGGAGAGATGTG
66 TAAGACCATAGTTGGGCTATGGCATCGGAGAGATGTG
114872641 ATTATGTGCT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (103 bp):
CTAAGACGAATTGACGAAAAAGACCATGGTTGGACCATGGCAACATGTGATATGTGATTTCCGTA
TAAGACCATAGTTGGGCTATGGCATCGGAGAGATGTGG
Found at i:114872663 original size:53 final size:53
Alignment explanation
Indices: 114872480--114872684 Score: 183
Period size: 53 Copynumber: 3.9 Consensus size: 53
114872470 CCATGGCAAC
114872480 ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
* * * ** * * * * * *
114872533 ATGTGGCTAAGACGAATTGACGGAAAAGACCATGGTTGGACCATGG---C--A-AC
1 ATGT-GATATG-TG-ATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
114872583 ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
* * *
114872636 ATGTGATTATGTG-CTTCCGTATAAGACCATA-TCTAGGATATGGCATCGG
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGT-TGGGCTATGGCATCGG
114872685 TGTGATATAT
Statistics
Matches: 116, Mismatches: 25, Indels: 22
0.71 0.15 0.13
Matches are distributed among these distances:
47 24 0.21
48 1 0.01
49 4 0.03
50 6 0.05
51 1 0.01
52 2 0.02
53 43 0.37
54 10 0.09
55 1 0.01
56 24 0.21
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGTTGGGCTATGGCATCGGAGAG
Found at i:114872804 original size:42 final size:42
Alignment explanation
Indices: 114872736--114872862 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
114872726 GCATCAGTGA
*
114872736 GATATGTG-AT-TCGTGTAAGACTATAGCTGGGCTATGGCATC
1 GATATGTGAATAT-GTGTAAGACCATAGCTGGGCTATGGCATC
*
114872777 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGACATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* * * **
114872819 -ATTATGTGAAGATGTGTAAGATCATAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
114872861 GA
1 GA
114872863 GAAAATGAAG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 9 0.12
42 63 0.85
43 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:114873652 original size:21 final size:21
Alignment explanation
Indices: 114873611--114873652 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
114873601 CACTACAATA
* *
114873611 TTTCCTATCACTTCCTTTTAT
1 TTTCCTATCACTTCATATTAT
114873632 TTTCCT-TCACTATCATATTAT
1 TTTCCTATCACT-TCATATTAT
114873653 GACCATAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTCCTATCACTTCATATTAT
Found at i:114874502 original size:39 final size:37
Alignment explanation
Indices: 114874452--114874586 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 37
114874442 ATTTTATGGA
*
114874452 AAATCCTATTCACCTTGAGTTACCATAGTGAATCAGGAA-
1 AAATCCTATTCA-CTTTA-TTACC-TAGTGAATCAGGAAT
*
114874491 AAATCCTATTCACTTTATATATTTCTAGTGAATCAGGAAT
1 AAATCCTATTCACTTTAT-TA--CCTAGTGAATCAGGAAT
* *
114874531 AAATCCTATTCACTTTAATTTCTTTTAGTGAATCAGGAAT
1 AAATCCTATTCACTTT-ATTAC--CTAGTGAATCAGGAAT
*
114874571 AGATCCTATTCACTTT
1 AAATCCTATTCACTTT
114874587 TAATTCTCGA
Statistics
Matches: 83, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
37 1 0.01
38 6 0.07
39 26 0.31
40 48 0.58
41 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (37 bp):
AAATCCTATTCACTTTATTACCTAGTGAATCAGGAAT
Found at i:114874544 original size:40 final size:40
Alignment explanation
Indices: 114874477--114874586 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
114874467 TGAGTTACCA
114874477 TAGTGAATCAGGAA-AAATCCTATTCACTTTATATAT-TTC
1 TAGTGAATCAGGAATAAATCCTATTCACTTTA-ATATCTTC
* *
114874516 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTTCTTT
1 TAGTGAATCAGGAATAAATCCTATTCACTTTAATATCTTC
*
114874556 TAGTGAATCAGGAATAGATCCTATTCACTTT
1 TAGTGAATCAGGAATAAATCCTATTCACTTT
114874587 TAATTCTCGA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
39 17 0.26
40 49 0.74
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (40 bp):
TAGTGAATCAGGAATAAATCCTATTCACTTTAATATCTTC
Found at i:114875457 original size:17 final size:15
Alignment explanation
Indices: 114875429--114875462 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
114875419 CCCTAATTTC
114875429 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
114875444 TCCCTTTTTCCTTTCTT
1 TCCC-TTTT-CTTTCTT
114875461 TC
1 TC
114875463 TTTCTACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:114875521 original size:22 final size:23
Alignment explanation
Indices: 114875482--114875525 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
114875472 TGTTTTTTCG
114875482 TTTCTATTCTGTTCTTTCTTTTT
1 TTTCTATTCTGTTCTTTCTTTTT
* *
114875505 TTTCT-TTCTTTTGTTTCTTTT
1 TTTCTATTCTGTTCTTTCTTTT
114875526 GTTCATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (23 bp):
TTTCTATTCTGTTCTTTCTTTTT
Found at i:114875697 original size:3 final size:3
Alignment explanation
Indices: 114875680--114875729 Score: 58
Period size: 3 Copynumber: 18.7 Consensus size: 3
114875670 TTTATTTAAT
114875680 TAA TAA -AA T-A TAA TAA T-A TAA TAA T-A TAA TAA T-A TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
114875722 TAA TAA TA
1 TAA TAA TA
114875730 TTTTACTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
2 12 0.29
3 29 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:114875699 original size:8 final size:8
Alignment explanation
Indices: 114875682--114875730 Score: 91
Period size: 8 Copynumber: 6.2 Consensus size: 8
114875672 TATTTAATTA
114875682 ATAA-AAT
1 ATAATAAT
114875689 ATAATAAT
1 ATAATAAT
114875697 ATAATAAT
1 ATAATAAT
114875705 ATAATAAT
1 ATAATAAT
114875713 ATAATAAT
1 ATAATAAT
114875721 ATAATAAT
1 ATAATAAT
114875729 AT
1 AT
114875731 TTTACTTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 4 0.10
8 37 0.90
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATAAT
Found at i:114876930 original size:33 final size:33
Alignment explanation
Indices: 114876893--114876958 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
114876883 GTGTTAGCCA
114876893 CACGGGCTGAGACACGGTCGTGTGTCTCAACCG
1 CACGGGCTGAGACACGGTCGTGTGTCTCAACCG
114876926 CACGGGCTGAGACACGGTCGTGTGTCTCAACCG
1 CACGGGCTGAGACACGGTCGTGTGTCTCAACCG
114876959 TGTGAGGGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (33 bp):
CACGGGCTGAGACACGGTCGTGTGTCTCAACCG
Found at i:114878458 original size:10 final size:9
Alignment explanation
Indices: 114878419--114878507 Score: 51
Period size: 9 Copynumber: 9.9 Consensus size: 9
114878409 CAGGTGGTAA
*
114878419 AAAAATCAT
1 AAAAATTAT
*
114878428 AAAAAATA-
1 AAAAATTAT
**
114878436 AAAAACAAT
1 AAAAATTAT
*
114878445 AAAAGTTAT
1 AAAAATTAT
114878454 AAAAATTAT
1 AAAAATTAT
* *
114878463 -TAAATTTT
1 AAAAATTAT
114878471 AATAAAATTAT
1 -A-AAAATTAT
114878482 AAAAAAATT-T
1 --AAAAATTAT
114878492 -AAAATTAT
1 AAAAATTAT
114878500 AAAAATTA
1 AAAAATTA
114878508 AAATTTTTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
7 6 0.10
8 13 0.21
9 27 0.44
10 1 0.02
11 12 0.20
12 2 0.03
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:114880259 original size:27 final size:26
Alignment explanation
Indices: 114880207--114880267 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
114880197 GATAATAAAT
*
114880207 GAATTTAATATAAATAATGTGAAAAA
1 GAATTTAATATAAACAATGTGAAAAA
*
114880233 GGAATTTAATATCAACAATGT-ACAAAA
1 -GAATTTAATATAAACAATGTGA-AAAA
*
114880260 CAATTTAA
1 GAATTTAA
114880268 AAATAGAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.30
Consensus pattern (26 bp):
GAATTTAATATAAACAATGTGAAAAA
Found at i:114880680 original size:25 final size:24
Alignment explanation
Indices: 114880639--114880686 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
114880629 ATATATAAAA
114880639 CAATTTTAAAATAAATAATATAAGT
1 CAATTTTAAAATAAATAA-ATAAGT
114880664 CAATTTTAAAA-ATAATAAATAAG
1 CAATTTTAAAATA-AATAAATAAG
114880687 AATCTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (24 bp):
CAATTTTAAAATAAATAAATAAGT
Found at i:114880697 original size:17 final size:19
Alignment explanation
Indices: 114880677--114880720 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
114880667 TTTTAAAAAT
114880677 AATAAATAAGA-ATC-TAA
1 AATAAATAAGAGATCTTAA
114880694 AATAAA-AGAGAGATCTTAA
1 AATAAATA-AGAGATCTTAA
114880713 AA-AAATAA
1 AATAAATAA
114880721 TATACAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
16 1 0.04
17 9 0.39
18 7 0.30
19 6 0.26
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (19 bp):
AATAAATAAGAGATCTTAA
Found at i:114880990 original size:25 final size:25
Alignment explanation
Indices: 114880958--114881015 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
114880948 TTATTCACAT
*
114880958 ATATAAAATA-GTACAATAAAATAAC
1 ATATAAAATACGTAAAAT-AAATAAC
* *
114880983 ATATAAAA-ACGTAAAATAGATAAT
1 ATATAAAATACGTAAAATAAATAAC
114881007 ATATAAAAT
1 ATATAAAAT
114881016 GGTTTAACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (25 bp):
ATATAAAATACGTAAAATAAATAAC
Found at i:114881010 original size:24 final size:25
Alignment explanation
Indices: 114880956--114881015 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
114880946 AATTATTCAC
*
114880956 ATATATAAAATAGTACAATAAAATA
1 ATATATAAAATAGTAAAATAAAATA
* *
114880981 ACATATAAAA-ACGTAAAAT-AGATA
1 ATATATAAAATA-GTAAAATAAAATA
114881005 ATATATAAAAT
1 ATATATAAAAT
114881016 GGTTTAACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (25 bp):
ATATATAAAATAGTAAAATAAAATA
Found at i:114881167 original size:18 final size:18
Alignment explanation
Indices: 114881117--114881168 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
114881107 GAAAACATAT
**
114881117 GTATATAAATAATCCAAA
1 GTATATAAATAATTTAAA
*
114881135 ATAATATATAA-AATTTAAA
1 GT-ATATA-AATAATTTAAA
114881154 GTATATAAATAATTT
1 GTATATAAATAATTT
114881169 CAAAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
17 2 0.07
18 11 0.41
19 12 0.44
20 2 0.07
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (18 bp):
GTATATAAATAATTTAAA
Found at i:114881206 original size:43 final size:43
Alignment explanation
Indices: 114881133--114881290 Score: 228
Period size: 43 Copynumber: 3.7 Consensus size: 43
114881123 AAATAATCCA
114881133 AAATAATATATAAAA-TTTAAAGTATATAAATAATTTCAAAAT
1 AAATAATATATAAAAGTTTAAAGTATATAAATAATTTCAAAAT
* *
114881175 AAATAATATATAAAAGTTTAAAGCATATAAATAATTTCAAAAG
1 AAATAATATATAAAAGTTTAAAGTATATAAATAATTTCAAAAT
* * * *
114881218 AAATAAAATATAATAGTTTGAAGTATATAAACAATTTCAAAAT
1 AAATAATATATAAAAGTTTAAAGTATATAAATAATTTCAAAAT
* * *
114881261 AAATAAGATATAATAGTTTGAAGTATATAA
1 AAATAATATATAAAAGTTTAAAGTATATAA
114881291 TGTAGGGACC
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 15 0.14
43 91 0.86
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (43 bp):
AAATAATATATAAAAGTTTAAAGTATATAAATAATTTCAAAAT
Found at i:114881788 original size:11 final size:11
Alignment explanation
Indices: 114881772--114881796 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
114881762 AAAATTTTTT
114881772 ATTTTTGCTTC
1 ATTTTTGCTTC
114881783 ATTTTTGCTTC
1 ATTTTTGCTTC
114881794 ATT
1 ATT
114881797 CTCTAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (11 bp):
ATTTTTGCTTC
Found at i:114888086 original size:19 final size:19
Alignment explanation
Indices: 114888062--114888099 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
114888052 TAAATGGGTG
114888062 CTCGGCAAGATTACTTTCT
1 CTCGGCAAGATTACTTTCT
114888081 CTCGGCAAGATTACTTTCT
1 CTCGGCAAGATTACTTTCT
114888100 GGTCTCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (19 bp):
CTCGGCAAGATTACTTTCT
Found at i:114889133 original size:6 final size:6
Alignment explanation
Indices: 114889122--114889146 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
114889112 ACTTTGTCAT
114889122 TAAATA TAAATA TAAATA TAAATA T
1 TAAATA TAAATA TAAATA TAAATA T
114889147 TAAAGGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TAAATA
Found at i:114890390 original size:21 final size:21
Alignment explanation
Indices: 114890366--114890415 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
114890356 CCCCTTTTCT
114890366 TTTAATAATATATA-TTTTTAA
1 TTTAA-AATATATATTTTTTAA
*
114890387 TTTAACATATATATTTTTTAA
1 TTTAAAATATATATTTTTTAA
*
114890408 TTTTAAAT
1 TTTAAAAT
114890416 TGGTGTTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTAAAATATATATTTTTTAA
Found at i:114892560 original size:2 final size:2
Alignment explanation
Indices: 114892555--114892579 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114892545 ATATATATAT
114892555 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
114892580 ATAAAACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:114894244 original size:104 final size:104
Alignment explanation
Indices: 114894063--114894268 Score: 376
Period size: 104 Copynumber: 2.0 Consensus size: 104
114894053 CTTTTTAGTA
*
114894063 GCTTCAAATTGTAATTTACAAAAGCAATTACACAAAGATTCAAACAAAATATCAAAACTGAAGGT
1 GCTTCAAATTGTAATTTACAAAAACAATTACACAAAGATTCAAACAAAATATCAAAACTGAAGGT
*
114894128 GACCAAAGTTGAGGGACTGTTTACGATGGTCACCTTGTG
66 GACCAAAATTGAGGGACTGTTTACGATGGTCACCTTGTG
**
114894167 GCTTCAAATTGTAATTTACAAAAACAATTACACAAAGATTCGTACAAAATATCAAAACTGAAGGT
1 GCTTCAAATTGTAATTTACAAAAACAATTACACAAAGATTCAAACAAAATATCAAAACTGAAGGT
114894232 GACCAAAATTGAGGGACTGTTTACGATGGTCACCTTG
66 GACCAAAATTGAGGGACTGTTTACGATGGTCACCTTG
114894269 CATAATTTTG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 98 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (104 bp):
GCTTCAAATTGTAATTTACAAAAACAATTACACAAAGATTCAAACAAAATATCAAAACTGAAGGT
GACCAAAATTGAGGGACTGTTTACGATGGTCACCTTGTG
Found at i:114895865 original size:20 final size:19
Alignment explanation
Indices: 114895820--114895872 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
114895810 TTTAAAAAAA
114895820 ATTTAAAAAAATAAACAAT
1 ATTTAAAAAAATAAACAAT
*
114895839 ATATAAAAAAAGTTAAA-AAT
1 ATTTAAAAAAA--TAAACAAT
* *
114895859 TTTTAAAATAATAA
1 ATTTAAAAAAATAA
114895873 TTATGGGAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 3 0.11
19 10 0.36
20 11 0.39
21 4 0.14
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
ATTTAAAAAAATAAACAAT
Found at i:114896102 original size:21 final size:21
Alignment explanation
Indices: 114896064--114896103 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
114896054 AAACAATTTC
*
114896064 ATTTTATTCTACTTAACTCAA
1 ATTTTATTCTACTAAACTCAA
114896085 ATTTTATT-TCACTAAACTC
1 ATTTTATTCT-ACTAAACTC
114896104 GATTTGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTTATTCTACTAAACTCAA
Found at i:114899240 original size:2 final size:2
Alignment explanation
Indices: 114899233--114899267 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
114899223 AATTTATTTC
114899233 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114899268 AAAGTAATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:114900505 original size:32 final size:32
Alignment explanation
Indices: 114900464--114900624 Score: 196
Period size: 32 Copynumber: 4.9 Consensus size: 32
114900454 GAGTAAGTTG
*
114900464 AGGCCAATATGTTGGTTTTGTTCATTCCGCTA
1 AGGCCAATATGTTGGTTTTGTCCATTCCGCTA
*
114900496 AGGCCAATATGTTGATTTTGTCCATTCCGCTA
1 AGGCCAATATGTTGGTTTTGTCCATTCCGCTA
** **
114900528 AGGCCAGCATGTTCATTTTGTCCATTCCGCTA
1 AGGCCAATATGTTGGTTTTGTCCATTCCGCTA
* **
114900560 AGGCCAATGTGTTGGTTTTGTCCATTCCATTA
1 AGGCCAATATGTTGGTTTTGTCCATTCCGCTA
114900592 AGGTCAAATCAATATGTTGGTTTTGTCCATTCC
1 AGG-C----CAATATGTTGGTTTTGTCCATTCC
114900625 ACTGAGGTTA
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
32 87 0.78
33 1 0.01
37 23 0.21
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (32 bp):
AGGCCAATATGTTGGTTTTGTCCATTCCGCTA
Found at i:114903838 original size:26 final size:26
Alignment explanation
Indices: 114903790--114903839 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
114903780 GTAAATAAAA
*
114903790 TTTTTTAAAAATACTTCTCAAAAACG
1 TTTTTTAAAAATACTTCTAAAAAACG
** *
114903816 TTTTTTACCAATACTTTTAAAAAA
1 TTTTTTAAAAATACTTCTAAAAAA
114903840 ACATTGTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.42
Consensus pattern (26 bp):
TTTTTTAAAAATACTTCTAAAAAACG
Found at i:114918343 original size:29 final size:30
Alignment explanation
Indices: 114918301--114918368 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
114918291 TGGCCCAAGA
* * *
114918301 GTAAATACTTAAAATTTGAATGATTAA-AGT
1 GTAAATA-TAAAAATTTGAAGGACTAATAGT
114918331 GTAAATATAAAAATTTGAAGGACTAATAGT
1 GTAAATATAAAAATTTGAAGGACTAATAGT
*
114918361 GCAAATAT
1 GTAAATAT
114918369 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.15, T:0.32
Consensus pattern (30 bp):
GTAAATATAAAAATTTGAAGGACTAATAGT
Found at i:114920836 original size:46 final size:46
Alignment explanation
Indices: 114920784--114921058 Score: 460
Period size: 46 Copynumber: 6.0 Consensus size: 46
114920774 AGTGTGCTCT
*
114920784 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
114920830 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
114920876 CTGATATGAAATGTGTAAGACCATGGTTGGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTT-GAAAGATACCATGGCAAC
114920923 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
114920969 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
114921015 ATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
114921059 TCATGTCAAA
Statistics
Matches: 219, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 173 0.79
47 46 0.21
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:114920942 original size:93 final size:92
Alignment explanation
Indices: 114920784--114921058 Score: 460
Period size: 93 Copynumber: 3.0 Consensus size: 92
114920774 AGTGTGCTCT
*
114920784 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
114920849 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
114920876 CTGATATGAAATGTGTAAGACCATGGTTGGAAAGATACCATGGCAACCTGATATGAAATGTGTAA
1 CTGATATGAAATGTGTAAGACCATGGTT-GAAAGATACCATGGCAACCTGATATGAAATGTGTAA
114920941 GACCATGGTTGAAAGATACCATGGCAAC
65 GACCATGGTTGAAAGATACCATGGCAAC
* * ** *
114920969 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
* * *
114921034 ACCATAGTTGAAAGACACTATGGCA
66 ACCATGGTTGAAAGATACCATGGCA
114921059 TCATGTCAAA
Statistics
Matches: 173, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
92 82 0.47
93 91 0.53
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:114921034 original size:139 final size:138
Alignment explanation
Indices: 114920784--114921058 Score: 460
Period size: 139 Copynumber: 2.0 Consensus size: 138
114920774 AGTGTGCTCT
*
114920784 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
* * ** * * *
114920849 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGGAAAGATAC
66 ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTT-GAAAGACAC
114920914 CATGGCAAC
130 CATGGCAAC
114920923 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
*
114920988 ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACT
66 ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACC
114921053 ATGGCA
131 ATGGCA
114921059 TCATGTCAAA
Statistics
Matches: 127, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
138 14 0.11
139 113 0.89
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (138 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACC
ATGGCAAC
Found at i:114927025 original size:65 final size:65
Alignment explanation
Indices: 114926897--114927029 Score: 169
Period size: 65 Copynumber: 2.0 Consensus size: 65
114926887 TCATTCATAA
* ** * *
114926897 TACATCTAGTTAGGAGCATTTGATTCATTTTTTTTTATCATAACATCCTAGTTATTTGTCATAAG
1 TACATCTAGTTAGGAACATTTGATTCA---TTTTCGATCATAACATCCTAATTATTTGGCATAAG
114926962 CAT
63 CAT
*
114926965 TACATTCTAGTTAGGAACATTTGATTCA-TTTCGATCATAGCATCCTAATTATTTGGCATAAGCA
1 TACA-TCTAGTTAGGAACATTTGATTCATTTTCGATCATAACATCCTAATTATTTGGCATAAGCA
114927029 T
65 T
114927030 AGGAAACCGA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
65 32 0.55
68 4 0.07
69 22 0.38
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (65 bp):
TACATCTAGTTAGGAACATTTGATTCATTTTCGATCATAACATCCTAATTATTTGGCATAAGCAT
Found at i:114927221 original size:84 final size:83
Alignment explanation
Indices: 114927088--114927925 Score: 1056
Period size: 84 Copynumber: 10.0 Consensus size: 83
114927078 TCAAGACAAC
114927088 AAGCCTTAAC-CTCCTAAGCAGTAGGGTAACAGGC-ATGAAAATACAGATCTCCCCTAAACAGTA
1 AAGCCTTAACTC-CCTAAGCAGTAGGGTAACA-GCTA-GAAAATACAGATCTCCCCTAAACAGTA
* *
114927151 GTGGAACAGATCGAAGACAGC
63 GTGGAGCAGATCGAAGACAGT
* * * *
114927172 AGGTCTTAACTCCCTAAGCAGTAGGGTAACCAGTTAGAAAATACAGATCTCCCCTAAATAGTAGT
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAA-CAGCTAGAAAATACAGATCTCCCCTAAACAGTAGT
** *
114927237 GGAGCAGATCGAAGTTAGC
65 GGAGCAGATCGAAGACAGT
* * * *
114927256 AAGCCTTAACTCCCTAAGTATTAGGGTAACAGGCTAAAAAAAATACAGATCTCCCCTAAATAGT-
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACA-GCT--AGAAAATACAGATCTCCCCTAAACAGTA
* * *
114927320 GTGGAACAGATCGAAGATAGC
63 GTGGAGCAGATCGAAGACAGT
* * * *
114927341 AAGCCTTAACCCCCTAAGCAGTAGGGTGACAGACTAAAAAAAATACAGATCTCCCCTAAACAATA
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAG-CT--AGAAAATACAGATCTCCCCTAAACAGTA
* * * *
114927406 GTGGAACAGATCAAAGTCAGC
63 GTGGAGCAGATCGAAGACAGT
* * * *
114927427 AAGCGTTAACTCCCTAAGCAGTAGGGTAAGAGGCTAGAAAATACAGATCTCCCCTAAATAGTAGC
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACA-GCTAGAAAATACAGATCTCCCCTAAACAGTAGT
* * *
114927492 CGAGCAGATCAAAGAAAGT
65 GGAGCAGATCGAAGACAGT
* *
114927511 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACGGATCTCCCCTAAATAGTAGT
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACA-GCTAGAAAATACAGATCTCCCCTAAACAGTAGT
*
114927576 GGAGCAGATCGAAGACAAT
65 GGAGCAGATCGAAGACAGT
* *
114927595 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAATAGC
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACA-GCTAGAAAATACAGATCTCCCCTAAACAGTAGT
*
114927660 GGAGCAG-T-GAAGACAAT
65 GGAGCAGATCGAAGACAGT
**
114927677 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAGACTAGAAAATACAGATCTTTCCTAAACAGTAGT
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAG-CTAGAAAATACAGATCTCCCCTAAACAGTAGT
114927742 GGAGCAGATCGAAGACAGT
65 GGAGCAGATCGAAGACAGT
** *
114927761 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAGACTAGAAAATACAGATCTTTCCTAAACAGTAGC
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAACAG-CTAGAAAATACAGATCTCCCCTAAACAGTAGT
114927826 GGAGCAGATCGAAGACAGT
65 GGAGCAGATCGAAGACAGT
** * * *
114927845 AAGCCTTAACTCCCTAAATAGTAGGGTAACCGGCTAGAAGATACAAATCTCCCCTAAACAGTAGT
1 AAGCCTTAACTCCCTAAGCAGTAGGGTAA-CAGCTAGAAAATACAGATCTCCCCTAAACAGTAGT
* *
114927910 GGAGCAAATTGAAGAC
65 GGAGCAGATCGAAGAC
114927926 GAGTTTCTAT
Statistics
Matches: 676, Mismatches: 65, Indels: 26
0.88 0.08 0.03
Matches are distributed among these distances:
81 1 0.00
82 75 0.11
83 4 0.01
84 441 0.65
85 81 0.12
86 73 0.11
87 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (83 bp):
AAGCCTTAACTCCCTAAGCAGTAGGGTAACAGCTAGAAAATACAGATCTCCCCTAAACAGTAGTG
GAGCAGATCGAAGACAGT
Found at i:114927749 original size:250 final size:251
Alignment explanation
Indices: 114927080--114927912 Score: 1127
Period size: 250 Copynumber: 3.3 Consensus size: 251
114927070 GGCATCGGTC
114927080 AAGACAACAAGCCTTAAC-CTCCTAAGCAGTAGGGTAACAGGC-ATGAAAATACAGATCTCCCCT
1 AAGACAACAAGCCTTAACTC-CCTAAGCAGTAGGGTAACAGGCTA-GAAAATACAGATCTCCCCT
* * * *
114927143 AAACAGTAGTGGAACAGATCGAAGACAGCAGGTCTTAACTCCCTAAGCAGTAGGGTAACCAGTTA
64 AAACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAACTCCCTAAGCAGTAGGGTAA-CAGCTA
** *
114927208 GAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCGAAGTTAGCAAGCCTTAACTCCCTAA
128 GAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCGAAGAAAGTAAGCCTTAACTCCCTAA
* * * *
114927273 GTATTAGGGTAACAGGCTAAAAAAAATACAGATCTCCCCTAAATAGT-GTGGAACAGATCG
193 GCAGTAGGGTAACAGGCT--AGAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCG
* * * * * *
114927333 AAGATAGCAAGCCTTAACCCCCTAAGCAGTAGGGTGACAGACTAAAAAAAATACAGATCTCCCCT
1 AAGACAACAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCT--AGAAAATACAGATCTCCCCT
* * * *
114927398 AAACAATAGTGGAACAGATCAAAGTCAGCAAGCGTTAACTCCCTAAGCAGTAGGGTAAGAGGCTA
64 AAACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAACTCCCTAAGCAGTAGGGTAACA-GCTA
** *
114927463 GAAAATACAGATCTCCCCTAAATAGTAGCCGAGCAGATCAAAGAAAGTAAGCCTTAACTCCCTAA
128 GAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCGAAGAAAGTAAGCCTTAACTCCCTAA
*
114927528 GCAGTAGGGTAACAGGCTAGAAAATACGGATCTCCCCTAAATAGTAGTGGAGCAGATCG
193 GCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCG
*
114927587 AAGACAATAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
1 AAGACAACAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
* * **
114927652 ACAATAGCGGAGCAG-T-GAAGACAATAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGACTAGA
66 ACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAACTCCCTAAGCAGTAGGGTAACAG-CTAGA
** * *
114927715 AAATACAGATCTTTCCTAAACAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAACTCCCTAAGC
130 AAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCGAAGAAAGTAAGCCTTAACTCCCTAAGC
* ** * *
114927780 AGTAGGGTAACAGACTAGAAAATACAGATCTTTCCTAAACAGTAGCGGAGCAGATCG
195 AGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCG
** ** * * *
114927837 AAGACAGTAAGCCTTAACTCCCTAAATAGTAGGGTAACCGGCTAGAAGATACAAATCTCCCCTAA
1 AAGACAACAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
*
114927902 ACAGTAGTGGA
66 ACAATAGTGGA
114927913 GCAAATTGAA
Statistics
Matches: 513, Mismatches: 60, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
249 1 0.00
250 216 0.42
251 1 0.00
252 34 0.07
253 61 0.12
254 51 0.10
255 148 0.29
256 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.19
Consensus pattern (251 bp):
AAGACAACAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAA
ACAATAGTGGAACAGATCGAAGACAGCAAGCCTTAACTCCCTAAGCAGTAGGGTAACAGCTAGAA
AATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCGAAGAAAGTAAGCCTTAACTCCCTAAGCA
GTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAATAGTAGTGGAGCAGATCG
Found at i:114927823 original size:40 final size:40
Alignment explanation
Indices: 114927689--114927824 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 40
114927679 GCCTTAACTC
*
114927689 CCTAAGCAGTAGGGTAACAGACTAGAAAATACAGATCTTT
1 CCTAAACAGTAGGGTAACAGACTAGAAAATACAGATCTTT
* * *
114927729 CCTAAACAGTAGTGG-AGCAGA-TCGAAGACAGTA-AG-CCTTAACT
1 CCTAAACAGTAG-GGTAACAGACTAGAA-A-A-TACAGATCTT---T
*
114927772 CCCTAAGCAGTAGGGTAACAGACTAGAAAATACAGATCTTT
1 -CCTAAACAGTAGGGTAACAGACTAGAAAATACAGATCTTT
114927813 CCTAAACAGTAG
1 CCTAAACAGTAG
114927825 CGGAGCAGAT
Statistics
Matches: 75, Mismatches: 9, Indels: 24
0.69 0.08 0.22
Matches are distributed among these distances:
39 4 0.05
40 31 0.41
41 6 0.08
42 4 0.05
43 6 0.08
44 20 0.27
45 4 0.05
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (40 bp):
CCTAAACAGTAGGGTAACAGACTAGAAAATACAGATCTTT
Found at i:114929376 original size:16 final size:16
Alignment explanation
Indices: 114929355--114929387 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
114929345 GGTTTTTTCA
114929355 TGTATAT-ATATTACTT
1 TGTATATCAT-TTACTT
114929371 TGTATATCATTTACTT
1 TGTATATCATTTACTT
114929387 T
1 T
114929388 TAATCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (16 bp):
TGTATATCATTTACTT
Found at i:114930918 original size:18 final size:18
Alignment explanation
Indices: 114930897--114930957 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
114930887 ATACACTAAT
114930897 ATTTAAACATATGTGAAA
1 ATTTAAACATATGTGAAA
* * *
114930915 ATTTAATATCCACA-CT-AAT
1 ATTTAA-A--CATATGTGAAA
114930934 ATTTAAACATATGTGAAA
1 ATTTAAACATATGTGAAA
114930952 ATTTAA
1 ATTTAA
114930958 TATCCTTTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
16 3 0.09
17 1 0.03
18 15 0.47
19 9 0.28
20 1 0.03
21 3 0.09
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.36
Consensus pattern (18 bp):
ATTTAAACATATGTGAAA
Found at i:114930930 original size:37 final size:37
Alignment explanation
Indices: 114930889--114930962 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
114930879 TGATAAAGAT
114930889 ACACTAATATTTAAACATATGTGAAAATTTAATATCC
1 ACACTAATATTTAAACATATGTGAAAATTTAATATCC
114930926 ACACTAATATTTAAACATATGTGAAAATTTAATATCC
1 ACACTAATATTTAAACATATGTGAAAATTTAATATCC
114930963 TTTACCAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (37 bp):
ACACTAATATTTAAACATATGTGAAAATTTAATATCC
Found at i:114933303 original size:126 final size:126
Alignment explanation
Indices: 114933147--114933401 Score: 474
Period size: 126 Copynumber: 2.0 Consensus size: 126
114933137 ATATACAAAA
114933147 TATGATTTAAAAGGACATATATCCTAATTTTATTTGATTCTAATCAAATTGATTTAATTGCACCT
1 TATGATTTAAAAGGACATATATCCTAATTTTATTTGATTCTAATCAAATTGATTTAATTGCACCT
*
114933212 TTAATGTAGATTTTGTCTTCTTATACATTAATATTTTCAAAATTCCTCCACTTTGAATGCC
66 TTAATGCAGATTTTGTCTTCTTATACATTAATATTTTCAAAATTCCTCCACTTTGAATGCC
* *
114933273 TATGATTTAAAAGGACATATATCCTGATTTTATTTGATTCTAATCAAATTGATTTAATTGCCCCT
1 TATGATTTAAAAGGACATATATCCTAATTTTATTTGATTCTAATCAAATTGATTTAATTGCACCT
*
114933338 TTAATGCAGATTTTGTCTTCTTATACATTAATATTTTCAAAATTCCTCCACTTTGAATGTC
66 TTAATGCAGATTTTGTCTTCTTATACATTAATATTTTCAAAATTCCTCCACTTTGAATGCC
114933399 TAT
1 TAT
114933402 AAAAGGCTAA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (126 bp):
TATGATTTAAAAGGACATATATCCTAATTTTATTTGATTCTAATCAAATTGATTTAATTGCACCT
TTAATGCAGATTTTGTCTTCTTATACATTAATATTTTCAAAATTCCTCCACTTTGAATGCC
Found at i:114933804 original size:23 final size:21
Alignment explanation
Indices: 114933774--114933820 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 21
114933764 ATTCAATTTA
114933774 TTTTATTTATATATATAAATATT
1 TTTTATTTATAT-T-TAAATATT
*
114933797 TTTTATTTATATTTATATATT
1 TTTTATTTATATTTAAATATT
114933818 TTT
1 TTT
114933821 GTTTGCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.43
22 1 0.04
23 12 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTATTTATATTTAAATATT
Found at i:114934058 original size:49 final size:49
Alignment explanation
Indices: 114934005--114934099 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
114933995 TTTTTCTAGG
* *
114934005 ATTTTAATCAATACATATATACCAAATATTGTAAAATAATTTTCTTGAT
1 ATTTTAATCAATACATATATACCAAACATTGTAAAATAACTTTCTTGAT
* * **
114934054 ATTTTAGTCAATACATATATATCGGACATTGTAAAATAACTTTCTT
1 ATTTTAATCAATACATATATACCAAACATTGTAAAATAACTTTCTT
114934100 AATAATCACA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (49 bp):
ATTTTAATCAATACATATATACCAAACATTGTAAAATAACTTTCTTGAT
Found at i:114937074 original size:20 final size:20
Alignment explanation
Indices: 114937049--114937097 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
114937039 AAAACCCCTT
*
114937049 TTGCCAAACCCCTAAAAGCA
1 TTGCCAAACCCCTAAAAACA
114937069 TTGCCAAACCCCTAAAAACA
1 TTGCCAAACCCCTAAAAACA
114937089 TTGCCAAAC
1 TTGCCAAAC
114937098 AATATTTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.41, C:0.35, G:0.08, T:0.16
Consensus pattern (20 bp):
TTGCCAAACCCCTAAAAACA
Found at i:114938521 original size:16 final size:18
Alignment explanation
Indices: 114938500--114938532 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
114938490 ATGTATTTCA
114938500 TTAATT-GTACA-TAATT
1 TTAATTGGTACAGTAATT
114938516 TTAATTGGTACAGTAAT
1 TTAATTGGTACAGTAAT
114938533 AAATTTAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (18 bp):
TTAATTGGTACAGTAATT
Found at i:114939504 original size:2 final size:2
Alignment explanation
Indices: 114939497--114939529 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
114939487 CCTTCACACC
114939497 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
114939530 GGTTCAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:114941114 original size:19 final size:19
Alignment explanation
Indices: 114941090--114941130 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
114941080 CACATATTAT
114941090 TTTAATC-TTCTTAAACAAA
1 TTTAATCATT-TTAAACAAA
*
114941109 TTTAATCATTTTATACAAA
1 TTTAATCATTTTAAACAAA
114941128 TTT
1 TTT
114941131 CTCTTTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTAATCATTTTAAACAAA
Found at i:114944003 original size:23 final size:23
Alignment explanation
Indices: 114943958--114944000 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
114943948 TGAGCGTTAT
*
114943958 ATAAAAAGTTAAAATAGATAATA
1 ATAAAAAGTTAAAATAAATAATA
*
114943981 ATAAAATG-TAAAATAAATAA
1 ATAAAAAGTTAAAATAAATAA
114944001 ATAGAATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (23 bp):
ATAAAAAGTTAAAATAAATAATA
Found at i:114944102 original size:15 final size:15
Alignment explanation
Indices: 114944078--114944123 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
114944068 ATTTAAATAG
*
114944078 AAATAAAAATATAAT
1 AAATAGAAATATAAT
114944093 AAATAGAAATATAAT
1 AAATAGAAATATAAT
114944108 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
114944124 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:114944126 original size:44 final size:44
Alignment explanation
Indices: 114944072--114944158 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
114944062 ATTAGTATTT
114944072 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
114944116 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
114944159 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:114944143 original size:15 final size:14
Alignment explanation
Indices: 114944088--114944198 Score: 68
Period size: 14 Copynumber: 7.6 Consensus size: 14
114944078 AAATAAAAAT
114944088 ATAATAAATAGA-AA
1 ATAA-AAATAGATAA
* *
114944102 TATAATAATAGTAGAA
1 -ATAAAAATAG-ATAA
*
114944118 ATATAAATAGATAA
1 ATAAAAATAGATAA
114944132 ATAAAAATTAGATAA
1 ATAAAAA-TAGATAA
*
114944147 ATAATAATAGTATTAGA
1 ATAAAAATAG-A-TA-A
*
114944164 ATAACAA-A-ATAA
1 ATAAAAATAGATAA
*
114944176 ATATAAATAGA-AA
1 ATAAAAATAGATAA
114944189 CATAAAAATA
1 -ATAAAAATA
114944199 ATAGCAATAA
Statistics
Matches: 77, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
12 6 0.08
13 5 0.06
14 27 0.35
15 27 0.35
16 5 0.06
17 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAAAATAGATAA
Found at i:114944148 original size:29 final size:28
Alignment explanation
Indices: 114944091--114944198 Score: 73
Period size: 29 Copynumber: 3.8 Consensus size: 28
114944081 TAAAAATATA
* * *
114944091 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAACATAAAAATAG-ATAAAT
114944120 ATAAATAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AACATAAAAA-TAGATAAAT
*
114944149 A-ATAATAGTATTAGA-ATAACAA-A-ATAAAT
1 ATA-AATAG-A--A-ACATAAAAATAGATAAAT
114944178 ATAAATAGAAACATAAAAATA
1 ATAAATAGAAACATAAAAATA
114944199 ATAGCAATAA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 2 0.03
29 38 0.58
30 8 0.12
31 2 0.03
32 7 0.11
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (28 bp):
ATAAATAGAAACATAAAAATAGATAAAT
Found at i:114949936 original size:2 final size:2
Alignment explanation
Indices: 114949925--114949954 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
114949915 TATTTTTTTA
*
114949925 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114949955 TTTGTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:114954819 original size:6 final size:6
Alignment explanation
Indices: 114954769--114954802 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
114954759 GAAGGATGAG
114954769 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGG
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGG
114954803 GGGGACAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.35, T:0.18
Consensus pattern (6 bp):
ATGGAA
Found at i:114955525 original size:20 final size:20
Alignment explanation
Indices: 114955478--114955526 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
114955468 TTTAAAATTA
114955478 TATTTAAAAATTATTATTTT
1 TATTTAAAAATTATTATTTT
*
114955498 TCAATTAAAAA-TATTAATTTT
1 T-ATTTAAAAATTATT-ATTTT
114955519 TATTTAAA
1 TATTTAAA
114955527 TTTAAAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTTAAAAATTATTATTTT
Found at i:114955752 original size:2 final size:2
Alignment explanation
Indices: 114955745--114955779 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
114955735 AATTTGCTAA
114955745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114955780 ATAAAACCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:114956772 original size:2 final size:2
Alignment explanation
Indices: 114956765--114956806 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
114956755 TAGGAAAATA
114956765 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114956807 GATAAAGGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114958382 original size:25 final size:24
Alignment explanation
Indices: 114958337--114958387 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
114958327 GGGGTGAAAG
* *
114958337 AAAATAATTTTAAATATTTTATATT
1 AAAATAATTTTAAAAAGTTTAT-TT
*
114958362 AAAATATTTTTAAAAAGTTTATTT
1 AAAATAATTTTAAAAAGTTTATTT
114958386 AA
1 AA
114958388 CAACGAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
AAAATAATTTTAAAAAGTTTATTT
Found at i:114958526 original size:13 final size:13
Alignment explanation
Indices: 114958508--114958532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114958498 TATGAAAAAA
114958508 ATAAAAATATTAC
1 ATAAAAATATTAC
114958521 ATAAAAATATTA
1 ATAAAAATATTA
114958533 ATTATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAAAATATTAC
Found at i:114965553 original size:20 final size:20
Alignment explanation
Indices: 114965528--114965574 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
114965518 GTTTTGATAT
114965528 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
114965548 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
114965568 ACATGAT
1 ACATGAT
114965575 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:114965650 original size:26 final size:25
Alignment explanation
Indices: 114965622--114965729 Score: 141
Period size: 25 Copynumber: 4.4 Consensus size: 25
114965612 AGAAAGTGCA
*
114965622 AAAAGGGC-TATGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
114965646 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
114965672 AAAAAGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
114965697 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
114965720 AAAAGAGGCT
1 AAAAG-GGCT
114965730 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.12
24 13 0.18
25 38 0.51
26 14 0.19
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:114973640 original size:20 final size:20
Alignment explanation
Indices: 114973615--114973661 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
114973605 GTTTTGATAT
114973615 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
114973635 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
114973655 ACATGAT
1 ACATGAT
114973662 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:114973797 original size:24 final size:24
Alignment explanation
Indices: 114973709--114973816 Score: 101
Period size: 25 Copynumber: 4.4 Consensus size: 24
114973699 AGAAAGTGCA
* *
114973709 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* * *
114973733 GAAAAGGGATTTTGCCCTAGTTTATT
1 -AAAAGGG-CTTTGCCCCAGTTTATC
*
114973759 AAAAAGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
* *
114973784 AAAAGGGCTCTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
114973807 AAAAGAGGCT
1 AAAAG-GGCT
114973817 AGGCCTCCAG
Statistics
Matches: 68, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
23 9 0.13
24 13 0.19
25 34 0.50
26 12 0.18
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:114974061 original size:31 final size:31
Alignment explanation
Indices: 114974025--114974085 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
114974015 CATTTACAGT
*
114974025 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
114974056 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
114974086 GAATATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:114980430 original size:11 final size:11
Alignment explanation
Indices: 114980414--114980456 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
114980404 TAGAATATAT
114980414 CCCATACCTTG
1 CCCATACCTTG
*
114980425 CCCATACCTTT
1 CCCATACCTTG
*
114980436 CCCATACC-TA
1 CCCATACCTTG
114980446 CCCATACCTTG
1 CCCATACCTTG
114980457 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:114980441 original size:22 final size:21
Alignment explanation
Indices: 114980413--114980455 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
114980403 TTAGAATATA
*
114980413 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
114980435 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
114980456 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:114983370 original size:18 final size:17
Alignment explanation
Indices: 114983327--114983371 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
114983317 GCCGATCTAC
114983327 ATGAAAAGAAAAAGAAA
1 ATGAAAAGAAAAAGAAA
* *
114983344 AGGGCAAAGAAAAATGAAA
1 A-TGAAAAGAAAAA-GAAA
114983363 ATGAAAAGA
1 ATGAAAAGA
114983372 GTGTAAAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
17 1 0.05
18 16 0.73
19 5 0.23
ACGTcount: A:0.69, C:0.02, G:0.22, T:0.07
Consensus pattern (17 bp):
ATGAAAAGAAAAAGAAA
Found at i:114987473 original size:15 final size:15
Alignment explanation
Indices: 114987453--114987483 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
114987443 TAGGACAAAA
114987453 TGATTGTATTTTTCT
1 TGATTGTATTTTTCT
114987468 TGATTGTATTTTTCT
1 TGATTGTATTTTTCT
114987483 T
1 T
114987484 ATTTGGCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.06, G:0.13, T:0.68
Consensus pattern (15 bp):
TGATTGTATTTTTCT
Found at i:114992528 original size:18 final size:18
Alignment explanation
Indices: 114992505--114992540 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
114992495 AAAAGTTGAT
114992505 AAGTTTTCTTTTTGTTAG
1 AAGTTTTCTTTTTGTTAG
114992523 AAGTTTTCTTTTTGTTAG
1 AAGTTTTCTTTTTGTTAG
114992541 TTTTTAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (18 bp):
AAGTTTTCTTTTTGTTAG
Found at i:114992544 original size:15 final size:16
Alignment explanation
Indices: 114992504--114992544 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
114992494 CAAAAGTTGA
114992504 TAAGTTTTCTTTTTGT
1 TAAGTTTTCTTTTTGT
114992520 TAGAAGTTTTCTTTTTGT
1 T--AAGTTTTCTTTTTGT
114992538 T-AGTTTT
1 TAAGTTTT
114992545 TAGTTTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 6 0.26
16 1 0.04
18 16 0.70
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.66
Consensus pattern (16 bp):
TAAGTTTTCTTTTTGT
Found at i:114994831 original size:15 final size:15
Alignment explanation
Indices: 114994811--114994841 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
114994801 TTAGGTTAGG
114994811 TTTTCTTTTCATTTT
1 TTTTCTTTTCATTTT
114994826 TTTTCTTTTCATTTT
1 TTTTCTTTTCATTTT
114994841 T
1 T
114994842 AGATTAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTCTTTTCATTTT
Found at i:114994865 original size:25 final size:26
Alignment explanation
Indices: 114994824--114994884 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
114994814 TCTTTTCATT
* *
114994824 TTTTTTCTTTTCATTTTTAGATTAGA
1 TTTTCTCTTTTCATTTTTAGAGTAGA
*
114994850 TTTTCTCTTTTC-TTTTTATAGTAGA
1 TTTTCTCTTTTCATTTTTAGAGTAGA
114994875 TTTTCT-TTTT
1 TTTTCTCTTTT
114994885 GTTGTTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 4 0.12
25 17 0.53
26 11 0.34
ACGTcount: A:0.15, C:0.10, G:0.07, T:0.69
Consensus pattern (26 bp):
TTTTCTCTTTTCATTTTTAGAGTAGA
Found at i:114995644 original size:26 final size:27
Alignment explanation
Indices: 114995615--114995670 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
114995605 TTTCCATATG
*
114995615 ACCAATTCTTGTA-AA-CATTTCATACA
1 ACCAATT-TTGTATAACCAATTCATACA
*
114995641 ACC-ATTTTGTATAACCAATTCATATA
1 ACCAATTTTGTATAACCAATTCATACA
114995667 ACCA
1 ACCA
114995671 TTCATCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 5 0.20
25 5 0.20
26 15 0.60
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (27 bp):
ACCAATTTTGTATAACCAATTCATACA
Found at i:114995656 original size:13 final size:13
Alignment explanation
Indices: 114995630--114995672 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
114995620 TTCTTGTAAA
*
114995630 CATTTCATACAAC
1 CATTTCATATAAC
**
114995643 CATTTTGTATAAC
1 CATTTCATATAAC
*
114995656 CAATTCATATAAC
1 CATTTCATATAAC
114995669 CATT
1 CATT
114995673 CATCATCTGG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.37
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:114995824 original size:46 final size:46
Alignment explanation
Indices: 114995771--114996029 Score: 385
Period size: 46 Copynumber: 5.6 Consensus size: 46
114995761 TGCCGTAGTG
* * *
114995771 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
* ** * * *
114995817 TCTTTCAACCATAGTCTTATTCATTTCATGTCACGTTGCCATGGTG
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
114995863 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
114995909 TCTTTCAACCATGGTCTTACACATTTCATATGATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* *
114995955 TCTTTCAACCATGGTCTTACACATTTCGTATCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
114996001 TATTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
114996030 TTCAGAAAGC
Statistics
Matches: 195, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 191 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
Found at i:114996805 original size:17 final size:19
Alignment explanation
Indices: 114996763--114996806 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
114996753 ACGAAATTTT
*
114996763 AATTAGTATTATAAGATAA
1 AATTATTATTATAAGATAA
*
114996782 AATTATTATTATTAGA-AA
1 AATTATTATTATAAGATAA
114996800 AA-TATTA
1 AATTATTA
114996807 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AATTATTATTATAAGATAA
Found at i:114999191 original size:60 final size:59
Alignment explanation
Indices: 114999117--114999253 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 59
114999107 AACTATGTTA
*
114999117 ATAT-GGCTAGGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTA-GGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
114999177 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
114999237 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
114999254 GTTAACATTG
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
59 1 0.01
60 47 0.69
61 20 0.29
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:114999253 original size:28 final size:27
Alignment explanation
Indices: 114999213--114999265 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
114999203 ATACTGTAAG
* *
114999213 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAG-TTAACATTGATAT
114999241 GGGCTAAGGCCCAGTTAACATTGAT
1 GGGCTAAGGCCCAGTTAACATTGAT
114999266 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (27 bp):
GGGCTAAGGCCCAGTTAACATTGATAT
Found at i:115013813 original size:21 final size:21
Alignment explanation
Indices: 115013789--115013862 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
115013779 ACTCATATGA
*
115013789 GTTTTAGTTTAACCCTTTTGG
1 GTTTCAGTTTAACCCTTTTGG
* * * *
115013810 GTTTCAATTTAGCTCTTTTGA
1 GTTTCAGTTTAACCCTTTTGG
*
115013831 GATTCAGTTTAA-CCTTTATGG
1 GTTTCAGTTTAACCCTTT-TGG
115013852 GTTTCAGTTTA
1 GTTTCAGTTTA
115013863 GCTCCTCTAA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 4 0.10
21 37 0.90
ACGTcount: A:0.19, C:0.14, G:0.18, T:0.50
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTTTGG
Found at i:115013940 original size:42 final size:42
Alignment explanation
Indices: 115013794--115013954 Score: 171
Period size: 42 Copynumber: 3.8 Consensus size: 42
115013784 TATGAGTTTT
* * * * *
115013794 AGTTTAACCCTTTTGGGTTTCAATTTAGCTCTTTTGAGATTC
1 AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTATAAGCTTC
* * *
115013836 AGTTTAACCTTTATGGGTTTCAGTTTAGCTCCTCTAAGCTTC
1 AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTATAAGCTTC
* * * *
115013878 AGTTCAACCCTTATGAGTTTCTGTTCAGCTCTTATAAGCTTTC
1 AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTATAAGC-TTC
* * *
115013921 A-TTTAACCCTTACGGGTTTCCGTTTAGCACTTAT
1 AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTAT
115013955 GTGATCCAAT
Statistics
Matches: 98, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 94 0.96
43 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (42 bp):
AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTATAAGCTTC
Found at i:115014411 original size:2 final size:2
Alignment explanation
Indices: 115014404--115014431 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
115014394 TAACTTAAGA
115014404 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
115014432 GTTATGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:115021606 original size:31 final size:32
Alignment explanation
Indices: 115021546--115021607 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
115021536 CAAACAAATC
* *
115021546 TTTTTTATTATATAAAAGTATATCAAATAACT
1 TTTTTTATTAAATAAAAGTAGATCAAATAACT
115021578 TTTTTTATTAAATAAAAG-AGA-CATAATAAC
1 TTTTTTATTAAATAAAAGTAGATCA-AATAAC
115021608 AAATTGGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 2 0.07
31 8 0.30
32 17 0.63
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (32 bp):
TTTTTTATTAAATAAAAGTAGATCAAATAACT
Found at i:115024403 original size:23 final size:25
Alignment explanation
Indices: 115024367--115024414 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
115024357 GACACTCTTA
*
115024367 TTTAAGTTTTATTG-GAGAGATTTG
1 TTTAAGTTGTATTGTGAGAGATTTG
*
115024391 TTTAA-TTGTATTGTGAGATATTTG
1 TTTAAGTTGTATTGTGAGAGATTTG
115024415 GGAAGAGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (25 bp):
TTTAAGTTGTATTGTGAGAGATTTG
Found at i:115024558 original size:17 final size:17
Alignment explanation
Indices: 115024536--115024568 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
115024526 TTTCTCTTTT
115024536 TACTTTGCATCTTGTTC
1 TACTTTGCATCTTGTTC
115024553 TACTTTGCATCTTGTT
1 TACTTTGCATCTTGTT
115024569 TGTTCTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.21, G:0.12, T:0.55
Consensus pattern (17 bp):
TACTTTGCATCTTGTTC
Found at i:115026550 original size:4 final size:4
Alignment explanation
Indices: 115026541--115026567 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
115026531 TTTATGAATT
115026541 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
115026568 TTGTTAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:115026963 original size:21 final size:21
Alignment explanation
Indices: 115026938--115027006 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
115026928 TATAATGATT
115026938 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
** * *
115026959 ATTATTATAATTATAAATT-A
1 ATTATTATGGTTTTATATTAA
*
115026979 A-CATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
115026999 ATTATTAT
1 ATTATTAT
115027007 TATTAGCATT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
19 12 0.33
20 4 0.11
21 20 0.56
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:115027361 original size:14 final size:14
Alignment explanation
Indices: 115027337--115027369 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
115027327 AAGAATTAAG
115027337 GAAACAAAGAAACA
1 GAAACAAAGAAACA
115027351 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
115027365 GAAAC
1 GAAAC
115027370 GAAGCAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:115031641 original size:29 final size:29
Alignment explanation
Indices: 115031608--115031666 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
115031598 TCCTTAACTC
115031608 AAAC-TTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTT-CCCCT
* * *
115031637 AAACTTTTGCATATTTACACTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTCCCCT
115031666 A
1 A
115031667 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (29 bp):
AAACTTTTGCAAAATTACAATTTTCCCCT
Found at i:115035984 original size:21 final size:21
Alignment explanation
Indices: 115035946--115036062 Score: 162
Period size: 21 Copynumber: 5.5 Consensus size: 21
115035936 CCTGATCAGT
** * *
115035946 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
115035967 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
115035988 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
*
115036009 ATACGACACACGAGGTGCTTG
1 ATACGACACACGAGGTGCCTG
115036030 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
115036051 AAATACGACACA
1 --ATACGACACA
115036063 TTGTAACACC
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
21 76 0.88
23 10 0.12
ACGTcount: A:0.35, C:0.26, G:0.24, T:0.15
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:115036650 original size:34 final size:34
Alignment explanation
Indices: 115036611--115036678 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
115036601 TTCAATCCAT
115036611 ATGAAAATAGACTCATTAAGCTTCAATTTAATAA
1 ATGAAAATAGACTCATTAAGCTTCAATTTAATAA
115036645 ATGAAAATAGACTCATTAAGCTTCAATTTAATAA
1 ATGAAAATAGACTCATTAAGCTTCAATTTAATAA
115036679 CTTACTCATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (34 bp):
ATGAAAATAGACTCATTAAGCTTCAATTTAATAA
Found at i:115037176 original size:19 final size:20
Alignment explanation
Indices: 115037152--115037189 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
115037142 GGTACCACCA
115037152 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
115037171 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
115037190 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:115037997 original size:29 final size:29
Alignment explanation
Indices: 115037964--115038019 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
115037954 ATTTAATACG
115037964 AACTTTAAAAAAATTACACTTTTGCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCTA
*** *
115037993 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTAAAAAAATTACACTTTTGCCC
115038020 CTAGGCTCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (29 bp):
AACTTTAAAAAAATTACACTTTTGCCCTA
Found at i:115039233 original size:15 final size:15
Alignment explanation
Indices: 115039207--115039263 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
115039197 CATATATATT
115039207 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
115039221 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
115039236 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
115039251 ATATAAATTCAAT
1 ATATAATTTCAAT
115039264 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:115041582 original size:2 final size:2
Alignment explanation
Indices: 115041575--115041611 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
115041565 TTTAAATTCT
115041575 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
115041612 TAATCTGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:115043465 original size:23 final size:25
Alignment explanation
Indices: 115043434--115043486 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
115043424 AAGGGAAAAA
*
115043434 AAATATTATATACATATAA-AATTT
1 AAATATTATACACATATAATAATTT
**
115043458 AAAT-TTATACGTATATAATAATTT
1 AAATATTATACACATATAATAATTT
115043482 AAATA
1 AAATA
115043487 AAAAATAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (25 bp):
AAATATTATACACATATAATAATTT
Found at i:115046492 original size:13 final size:13
Alignment explanation
Indices: 115046474--115046551 Score: 69
Period size: 13 Copynumber: 6.5 Consensus size: 13
115046464 ATTATTTCAA
* *
115046474 ATTTTTTATTATT
1 ATTTTTAATTAAT
115046487 ATTTTTAATTAAT
1 ATTTTTAATTAAT
*
115046500 ATTTATAATTAAT
1 ATTTTTAATTAAT
115046513 A--TTT--TT-AT
1 ATTTTTAATTAAT
*
115046521 -TTTTTAATTTAT
1 ATTTTTAATTAAT
*
115046533 CTTTTTAATTAAT
1 ATTTTTAATTAAT
115046546 ATTTTT
1 ATTTTT
115046552 TTATTTATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
8 2 0.04
9 5 0.09
11 4 0.08
12 2 0.04
13 40 0.75
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTTTAATTAAT
Found at i:115046525 original size:33 final size:32
Alignment explanation
Indices: 115046480--115046551 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 32
115046470 TCAAATTTTT
*
115046480 TATTATTATTTTTAATTAATATTTATAATTAA
1 TATTTTTATTTTTAATTAATATTTATAATTAA
* * *
115046512 TATTTTTATTTTTTAATTTATCTTTTTAATTAA
1 TATTTTTA-TTTTTAATTAATATTTATAATTAA
115046545 TATTTTT
1 TATTTTT
115046552 TTATTTATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
32 7 0.20
33 28 0.80
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (32 bp):
TATTTTTATTTTTAATTAATATTTATAATTAA
Found at i:115046538 original size:15 final size:14
Alignment explanation
Indices: 115046513--115046560 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
115046503 TATAATTAAT
*
115046513 ATTTTTATTTTTTA
1 ATTTATATTTTTTA
*
115046527 ATTTAT-CTTTTTA
1 ATTTATATTTTTTA
* *
115046540 ATTAATATTTTTTT
1 ATTTATATTTTTTA
115046554 ATTTATA
1 ATTTATA
115046561 AAATCAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (14 bp):
ATTTATATTTTTTA
Found at i:115046688 original size:13 final size:15
Alignment explanation
Indices: 115046659--115046691 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
115046649 GGTGGAGAAA
115046659 ATAAATATTTGATAT
1 ATAAATATTTGATAT
115046674 ATAAATA-TT-ATAT
1 ATAAATATTTGATAT
115046687 ATAAA
1 ATAAA
115046692 GGAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 2 0.11
15 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAAATATTTGATAT
Found at i:115052385 original size:14 final size:14
Alignment explanation
Indices: 115052357--115052398 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
115052347 GCTTATCTCT
115052357 TTTAAATCATA-ATA
1 TTTAAAT-ATATATA
115052371 TTTAAATATATATA
1 TTTAAATATATATA
* *
115052385 TATATATATATATA
1 TTTAAATATATATA
115052399 GATTAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 3 0.12
14 22 0.88
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAATATATATA
Found at i:115052836 original size:15 final size:15
Alignment explanation
Indices: 115052797--115052849 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
115052787 AAAAATGAAC
*
115052797 TAAATTAAAAAAATAAA
1 TAAA-TAAAAAAAT-AG
* *
115052814 TAACTAAAAATATAG
1 TAAATAAAAAAATAG
*
115052829 TTAATAAAAAAATAG
1 TAAATAAAAAAATAG
115052844 TAAATA
1 TAAATA
115052850 CTAAACTTAC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
15 18 0.62
16 8 0.28
17 3 0.10
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (15 bp):
TAAATAAAAAAATAG
Found at i:115055035 original size:20 final size:20
Alignment explanation
Indices: 115055012--115055051 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
115055002 TTTGCAAATG
115055012 TGTAATTTAAATTAATAATT
1 TGTAATTTAAATTAATAATT
115055032 TGTAATTTAAATTAATAATT
1 TGTAATTTAAATTAATAATT
115055052 CTATCATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TGTAATTTAAATTAATAATT
Found at i:115055348 original size:2 final size:2
Alignment explanation
Indices: 115055341--115055374 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
115055331 TGAAAAAGTA
*
115055341 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
115055375 TAAAAATAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:115055849 original size:32 final size:31
Alignment explanation
Indices: 115055813--115055873 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
115055803 TAGTAGAAAT
115055813 TGTAAAACTATTGAATGAATTATGTTTTGTGA
1 TGTAAAACT-TTGAATGAATTATGTTTTGTGA
** * *
115055845 TGTAAATGTTTGAATGGATTATTTTTTGT
1 TGTAAAACTTTGAATGAATTATGTTTTGT
115055874 TTTGGCATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.49
Consensus pattern (31 bp):
TGTAAAACTTTGAATGAATTATGTTTTGTGA
Found at i:115057151 original size:21 final size:21
Alignment explanation
Indices: 115057125--115057170 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
115057115 GAAGTATAGC
115057125 AAGGAACTTATAGTTGAATCG
1 AAGGAACTTATAGTTGAATCG
115057146 AAGGAACTTATAGTTGAATCG
1 AAGGAACTTATAGTTGAATCG
115057167 AAGG
1 AAGG
115057171 CAATGAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (21 bp):
AAGGAACTTATAGTTGAATCG
Found at i:115059545 original size:22 final size:22
Alignment explanation
Indices: 115059520--115059561 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
115059510 TAAATAGATA
115059520 AAAAAAGGAAA-ATAATTATGAT
1 AAAAAAGGAAAGA-AATTATGAT
115059542 AAAAAAGGAAAGAAATTATG
1 AAAAAAGGAAAGAAATTATG
115059562 TTTAATCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (22 bp):
AAAAAAGGAAAGAAATTATGAT
Found at i:115060016 original size:11 final size:11
Alignment explanation
Indices: 115060000--115060029 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
115059990 ATTCTCTGTG
115060000 AAAAATAAAAT
1 AAAAATAAAAT
115060011 AAAAATAAAAT
1 AAAAATAAAAT
115060022 AAACAATA
1 AAA-AATA
115060030 TAAAGAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:115064409 original size:11 final size:11
Alignment explanation
Indices: 115064393--115064426 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
115064383 CTAATTTGTG
115064393 AAAAATAAAAT
1 AAAAATAAAAT
115064404 AAAAATAAAAT
1 AAAAATAAAAT
115064415 --AAATAAAAT
1 AAAAATAAAAT
115064424 AAA
1 AAA
115064427 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.43
11 12 0.57
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:115064420 original size:4 final size:5
Alignment explanation
Indices: 115064394--115064426 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
115064384 TAATTTGTGA
115064394 AAAAT AAAAT AAAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAA
115064427 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 17 0.65
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:115069881 original size:8 final size:8
Alignment explanation
Indices: 115069864--115069909 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
115069854 CAACACACTT
*
115069864 AAACCTTA
1 AAACCCTA
115069872 AAACCCT-
1 AAACCCTA
*
115069879 AAA-CTTA
1 AAACCCTA
*
115069886 AAACCTTA
1 AAACCCTA
115069894 AAACCCTA
1 AAACCCTA
115069902 AAACCCTA
1 AAACCCTA
115069910 CACCTTTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
6 2 0.06
7 6 0.18
8 25 0.76
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (8 bp):
AAACCCTA
Found at i:115069892 original size:22 final size:21
Alignment explanation
Indices: 115069860--115069903 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 21
115069850 ATTTCAACAC
115069860 ACTTAAACCTTAAAACCCTAA
1 ACTTAAACCTTAAAACCCTAA
115069881 ACTTAAAACCTTAAAACCCTAA
1 ACTT-AAACCTTAAAACCCTAA
115069903 A
1 A
115069904 ACCCTACACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (21 bp):
ACTTAAACCTTAAAACCCTAA
Found at i:115070006 original size:22 final size:21
Alignment explanation
Indices: 115069972--115070034 Score: 74
Period size: 22 Copynumber: 3.0 Consensus size: 21
115069962 AACATTCAAC
115069972 CCTAAACCATAAAATACTAAGT
1 CCTAAACCATAAAATACTAA-T
* * *
115069994 CCTAACCCTTAAAACA-TAAT
1 CCTAAACCATAAAATACTAAT
115070014 CACTAAACCATAAAATACTAA
1 C-CTAAACCATAAAATACTAA
115070035 ACAATAAGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 2 0.06
21 15 0.45
22 16 0.48
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.22
Consensus pattern (21 bp):
CCTAAACCATAAAATACTAAT
Found at i:115070197 original size:45 final size:45
Alignment explanation
Indices: 115070133--115070254 Score: 153
Period size: 41 Copynumber: 2.8 Consensus size: 45
115070123 TTTGTGAGAA
* * *
115070133 AAATGCCGCTAATGCTTGACCTTTTGTGGTATTTTTTTTTCTCAC
1 AAATGCCGCTACTGCTTGACCTTTTGTGGCATTTTTTTTTATCAC
* *
115070178 AAATGCCACTACTACTTGACCTTTTGTGGCA----TTTTTATCAC
1 AAATGCCGCTACTGCTTGACCTTTTGTGGCATTTTTTTTTATCAC
* *
115070219 AAATGTCGCTACTGCTTGACCTTTTGCGGCATTTTT
1 AAATGCCGCTACTGCTTGACCTTTTGTGGCATTTTT
115070255 CTTACAAACG
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 36 0.56
45 28 0.44
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.43
Consensus pattern (45 bp):
AAATGCCGCTACTGCTTGACCTTTTGTGGCATTTTTTTTTATCAC
Found at i:115070231 original size:41 final size:41
Alignment explanation
Indices: 115070168--115070286 Score: 148
Period size: 41 Copynumber: 2.9 Consensus size: 41
115070158 GTGGTATTTT
* *
115070168 TTTTTCTCACAAATGCCACTACTACTTGACCTTTTGTGGCA
1 TTTTTATCACAAATGCCACTACTACTTGACCTTTTGCGGCA
* * *
115070209 TTTTTATCACAAATGTCGCTACTGCTTGACCTTTTGCGGCA
1 TTTTTATCACAAATGCCACTACTACTTGACCTTTTGCGGCA
* * * * *
115070250 TTTTTCTTACAAACGCCACTACTGCTTGAACTTTTGC
1 TTTTTATCACAAATGCCACTACTACTTGACCTTTTGC
115070287 AGCGTTTTCT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (41 bp):
TTTTTATCACAAATGCCACTACTACTTGACCTTTTGCGGCA
Found at i:115070305 original size:41 final size:40
Alignment explanation
Indices: 115070169--115070337 Score: 128
Period size: 41 Copynumber: 4.1 Consensus size: 40
115070159 TGGTATTTTT
* * * * * *
115070169 TTTTCTCACAAATGCCACTACTACTTGACCTTTTGTGGCA
1 TTTTCTTACAAACGCCACTACTGCTTGAACTTTTGCGGCG
* * * * *
115070209 TTTT-TATCACAAATGTCGCTACTGCTTGACCTTTTGCGGCAT
1 TTTTCT-T-ACAAACGCCACTACTGCTTGAACTTTTGCGGC-G
*
115070251 TTTTCTTACAAACGCCACTACTGCTTGAACTTTTGCAGCG
1 TTTTCTTACAAACGCCACTACTGCTTGAACTTTTGCGGCG
* *
115070291 TTTTCTTCATAAACGCCGCTA-TAGCTCT-AAGCTTTTGCGGCG
1 TTTTCTT-ACAAACGCCACTACT-GCT-TGAA-CTTTTGCGGCG
115070333 TTTTC
1 TTTTC
115070338 CAGTTAGCGC
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.01
40 12 0.11
41 71 0.67
42 21 0.20
43 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.38
Consensus pattern (40 bp):
TTTTCTTACAAACGCCACTACTGCTTGAACTTTTGCGGCG
Found at i:115070936 original size:24 final size:24
Alignment explanation
Indices: 115070902--115070947 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
115070892 TATATGAAAT
* *
115070902 ATAAATTTTAAATATTTTTAAACA
1 ATAAATATTAAATATTTATAAACA
*
115070926 ATAAATATTAATTATTTATAAA
1 ATAAATATTAAATATTTATAAA
115070948 ATTTAATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAAATATTAAATATTTATAAACA
Done.