Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 381 of 410
Found at i:115885393 original size:6 final size:6
Alignment explanation
Indices: 115885378--115885436 Score: 111
Period size: 6 Copynumber: 10.0 Consensus size: 6
115885368 TGTCCACGTT
115885378 TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
115885425 TTTTTA TTTTTA
1 TTTTTA TTTTTA
115885437 AGGTTGATTG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.10
6 47 0.90
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:115885476 original size:33 final size:36
Alignment explanation
Indices: 115885419--115885484 Score: 102
Period size: 33 Copynumber: 1.9 Consensus size: 36
115885409 TTTATTTTTA
*
115885419 TTTTTATTTTTATTTTTAAGGTTGATTGTGTCAAAG
1 TTTTTATTTTTATTGTTAAGGTTGATTGTGTCAAAG
115885455 TTTTT-TTTTT-TTGTTAA-GTTGATTGTGTCA
1 TTTTTATTTTTATTGTTAAGGTTGATTGTGTCA
115885485 CAATTTGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 13 0.45
34 6 0.21
35 5 0.17
36 5 0.17
ACGTcount: A:0.18, C:0.03, G:0.17, T:0.62
Consensus pattern (36 bp):
TTTTTATTTTTATTGTTAAGGTTGATTGTGTCAAAG
Found at i:115889202 original size:44 final size:44
Alignment explanation
Indices: 115889114--115889265 Score: 214
Period size: 44 Copynumber: 3.4 Consensus size: 44
115889104 AGAACAGAAA
* *
115889114 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--ATATATGGCATTGGAGACAGGAT
* *
115889160 TGGGCCATGTAAGTCCATATTATATATGGCATTAGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
*
115889204 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
* **
115889248 TAATTCATGTAAGTCCAT
1 TGAGCCATGTAAGTCCAT
115889266 GTCAAAGACA
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 76 0.79
46 20 0.21
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
Found at i:115896623 original size:44 final size:44
Alignment explanation
Indices: 115896535--115896686 Score: 214
Period size: 44 Copynumber: 3.4 Consensus size: 44
115896525 AGAACAGAAA
* *
115896535 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--ATATATGGCATTGGAGACAGGAT
*
115896581 TGAGCCATGTAAGTCCATATTATATATGGCATTAGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
* *
115896625 TGAGCCATGTAAGTTCATATTATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
* **
115896669 TAATTCATGTAAGTCCAT
1 TGAGCCATGTAAGTCCAT
115896687 GTCAAAGACA
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 75 0.78
46 21 0.22
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
Found at i:115899764 original size:5 final size:5
Alignment explanation
Indices: 115899754--115899798 Score: 81
Period size: 5 Copynumber: 8.8 Consensus size: 5
115899744 TGTCCACGTT
115899754 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT
115899799 TAAGGTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 34 0.87
6 5 0.13
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:115903279 original size:16 final size:16
Alignment explanation
Indices: 115903254--115903299 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
115903244 ATAATTAGTT
*
115903254 ATAATTATTTATTTAA
1 ATAATAATTTATTTAA
*
115903270 TTAATAATTTATTTAA
1 ATAATAATTTATTTAA
* *
115903286 ATAGTAATATATTT
1 ATAATAATTTATTT
115903300 TATCTTATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
ATAATAATTTATTTAA
Found at i:115905750 original size:12 final size:11
Alignment explanation
Indices: 115905719--115905755 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
115905709 ATTATGGAAA
115905719 GATAATATTTT
1 GATAATATTTT
115905730 GAT-ATATTTT
1 GATAATATTTT
115905740 AGATAATATTTT
1 -GATAATATTTT
115905752 GATA
1 GATA
115905756 TATGATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 7 0.29
11 10 0.42
12 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (11 bp):
GATAATATTTT
Found at i:115911613 original size:48 final size:48
Alignment explanation
Indices: 115911551--115911655 Score: 174
Period size: 48 Copynumber: 2.2 Consensus size: 48
115911541 TAAAAAATAT
* *
115911551 AAAAGTTTGTCTTATGGTATTTTAAGATTGTGACATGTCATCAACTAA
1 AAAATTTTATCTTATGGTATTTTAAGATTGTGACATGTCATCAACTAA
*
115911599 AAAATTTTATCTTATGGTATTTTAAGATTGTGACATGTCATCACCTAA
1 AAAATTTTATCTTATGGTATTTTAAGATTGTGACATGTCATCAACTAA
*
115911647 AAACTTTTA
1 AAAATTTTA
115911656 AAGTGTTACA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (48 bp):
AAAATTTTATCTTATGGTATTTTAAGATTGTGACATGTCATCAACTAA
Found at i:115911865 original size:22 final size:22
Alignment explanation
Indices: 115911823--115911865 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
115911813 CAACTCTTGG
* * *
115911823 TTTTTCTCAATTTTTATTTTTA
1 TTTTTATCAATTTTGAGTTTTA
115911845 TTTTTATCAATTTTGAGTTTT
1 TTTTTATCAATTTTGAGTTTT
115911866 TTGTAGTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.07, G:0.05, T:0.70
Consensus pattern (22 bp):
TTTTTATCAATTTTGAGTTTTA
Found at i:115915220 original size:68 final size:68
Alignment explanation
Indices: 115915136--115915268 Score: 266
Period size: 68 Copynumber: 2.0 Consensus size: 68
115915126 CCGTGCCCAC
115915136 CAGGTTTTACTTGCTTTAGCAGCTTACTTTATGCTTAACATGTGTTAGGAGTTAATATTCTATGT
1 CAGGTTTTACTTGCTTTAGCAGCTTACTTTATGCTTAACATGTGTTAGGAGTTAATATTCTATGT
115915201 TGT
66 TGT
115915204 CAGGTTTTACTTGCTTTAGCAGCTTACTTTATGCTTAACATGTGTTAGGAGTTAATATTCTATGT
1 CAGGTTTTACTTGCTTTAGCAGCTTACTTTATGCTTAACATGTGTTAGGAGTTAATATTCTATGT
115915269 ATGAGCCGGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.45
Consensus pattern (68 bp):
CAGGTTTTACTTGCTTTAGCAGCTTACTTTATGCTTAACATGTGTTAGGAGTTAATATTCTATGT
TGT
Found at i:115920505 original size:3 final size:3
Alignment explanation
Indices: 115920497--115920524 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
115920487 CATGGTGTTC
115920497 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
115920525 TTTGTCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:115921309 original size:97 final size:100
Alignment explanation
Indices: 115921141--115921341 Score: 243
Period size: 97 Copynumber: 2.0 Consensus size: 100
115921131 GTAATTAAGG
* ** *
115921141 TTTTAAGGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTACTAATTTT
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGTGTTACTTAAGTAAATTAATTACTAATTTT
* *
115921206 -AAAAAAAA-TAGATTATGG-TTTAGTGTTTATGGT
66 AAAAAAAAATTAGATTA-GGATTTAGGGTTTAGGGT
*
115921239 TTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAAG-GTTACTTGAGTAAATTAATTA-TAAATT
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTTT-AGTGTTACTTAAGTAAATTAATTACT-AATT
**
115921301 TTTTAAAAAAATTAGATTAGGATTTTAGGGTTTAGGGT
64 TTAAAAAAAAATTAGATTAGGA-TTTAGGGTTTAGGGT
115921339 TTT
1 TTT
115921342 AGGGTATTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
96 1 0.01
97 46 0.52
98 19 0.21
99 7 0.08
100 16 0.18
ACGTcount: A:0.40, C:0.01, G:0.16, T:0.42
Consensus pattern (100 bp):
TTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGTGTTACTTAAGTAAATTAATTACTAATTTT
AAAAAAAAATTAGATTAGGATTTAGGGTTTAGGGT
Found at i:115921341 original size:15 final size:15
Alignment explanation
Indices: 115921317--115921346 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
115921307 AAAAATTAGA
115921317 TTAGGATTTTAGGGT
1 TTAGGATTTTAGGGT
*
115921332 TTAGGGTTTTAGGGT
1 TTAGGATTTTAGGGT
115921347 ATTTAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (15 bp):
TTAGGATTTTAGGGT
Found at i:115921826 original size:125 final size:126
Alignment explanation
Indices: 115921415--115921965 Score: 822
Period size: 126 Copynumber: 4.4 Consensus size: 126
115921405 ATTTGTTAAT
* * * *
115921415 CTAAAA-AAGCTTCTACGTTGACGCTCTTTTGCTACAGTAGTCTCTG-AAAAATAAATTTGAGAA
1 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAA
*
115921478 GATGTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
66 GACGTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
* *
115921539 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGTATCTGAAAAAATAATTTTGAGAA
1 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAA
* *
115921604 GACGTGTCTGTGCAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
66 GACGTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
* * *
115921665 CTGAAAGAAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAA
1 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAA
* * * *
115921730 GACGTGTCTACGCAAATAGTGGT-AAAAACGCTTCAAGCAGGATCCATT-TCAGCAAAATTA
66 GACGTGTCTGCGCAAATAGT-GTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
** * *
115921790 CTGGAAGAAGCTCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAA
1 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAA
* ** * *
115921855 GACGTATCTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTA
66 GACGTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
* *
115921916 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
115921966 TAACTTGGGC
Statistics
Matches: 388, Mismatches: 34, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
124 8 0.02
125 146 0.38
126 232 0.60
127 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (126 bp):
CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAA
GACGTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
Found at i:115921874 original size:251 final size:251
Alignment explanation
Indices: 115921415--115921954 Score: 825
Period size: 251 Copynumber: 2.2 Consensus size: 251
115921405 ATTTGTTAAT
* * *
115921415 CTAAAA-AAGCTTCTACGTTGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAAATTTGAGAAG
1 CTAAAAGAAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAATAAATTTGAGAAG
* * *
115921479 ATGTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTACTAAA
66 ACGTGTCTACGCAAATAGTGTCAAAAACGCTTCAAGCAAGATCCATTGTCAGCAAAAGTACTAAA
115921544 AGAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGT
131 AGAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGT
* **
115921609 GTCTGTGCAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
196 ATCTGCACAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
* *
115921665 CTGAAAGAAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAA
1 CTAAAAGAAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCT-AAAAAATAAATTTGAGAA
* * *
115921730 GACGTGTCTACGCAAATAGTGGT-AAAAACGCTTCAAGCAGGATCCATT-TCAGCAAAATTACTG
65 GACGTGTCTACGCAAATAGT-GTCAAAAACGCTTCAAGCAAGATCCATTGTCAGCAAAAGTACTA
* * * * *
115921793 GAAGAAGCTCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGAC
129 AAAGAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGTATCTGAAAAAATAATTTTGAGAAGAC
* * * *
115921858 GTATCTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTA
194 GTATCTGCACAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
*
115921916 CTAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGT
1 CTAAAAGAAGCTTCCACGTGGACGCTCTTTTGCTACAGT
115921955 GGTTTCTGAA
Statistics
Matches: 262, Mismatches: 25, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
250 5 0.02
251 198 0.76
252 57 0.22
253 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (251 bp):
CTAAAAGAAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAATAAATTTGAGAAG
ACGTGTCTACGCAAATAGTGTCAAAAACGCTTCAAGCAAGATCCATTGTCAGCAAAAGTACTAAA
AGAAGCTCCCACGTGGACGCTCTTTTACTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGT
ATCTGCACAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTA
Found at i:115925308 original size:93 final size:93
Alignment explanation
Indices: 115925196--115925365 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
115925186 CCCATAAGCG
* *
115925196 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
115925261 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
*
115925289 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
115925354 GAGTTCGGATGC
66 GAGTTCGGATGC
115925366 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:115925362 original size:46 final size:46
Alignment explanation
Indices: 115925187--115925362 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
115925177 TGTAACCCGC
* * * *
115925187 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
115925233 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
115925283 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
115925326 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
115925363 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
44 1 0.01
46 62 0.56
47 28 0.25
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:115927934 original size:116 final size:116
Alignment explanation
Indices: 115927758--115928256 Score: 838
Period size: 116 Copynumber: 4.3 Consensus size: 116
115927748 TTTATATTTT
* * * *
115927758 ATTACTTGAAATAATATAAAAATATTCAAAATATTACGTTATTTAAAATAATTT-TCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCT-ATTTTATT
* * * * *
115927822 AAAAATATAAAACTAAATTATAATTACTTTATTTAAAACAACATTTTATATT
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
115927874 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCATTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
115927939 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
115927990 ATTACATGAAATAATATAAAAATATTTAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
115928055 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
115928106 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
*
115928171 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* *
115928222 ATTGCATGAAATAATATAAAAATATTAAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
115928257 TGTACAAATA
Statistics
Matches: 364, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
116 363 1.00
117 1 0.00
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:115928783 original size:30 final size:30
Alignment explanation
Indices: 115928743--115928801 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
115928733 TGTTGGACCC
* *
115928743 GGTGACTGTGTAGGTC-CTGTTGCTGGGCCG
1 GGTGACTGTGT-GGGCGCTGTTGATGGGCCG
*
115928773 GGTGATTGTGTGGGCGCTGTTGATGGGCC
1 GGTGACTGTGTGGGCGCTGTTGATGGGCC
115928802 TGCATCGTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.07, C:0.17, G:0.46, T:0.31
Consensus pattern (30 bp):
GGTGACTGTGTGGGCGCTGTTGATGGGCCG
Found at i:115930510 original size:31 final size:31
Alignment explanation
Indices: 115930475--115930538 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
115930465 TAACGAGAGT
*
115930475 TTTGAGAGGAATTTAAGAGAA-ATTTGAAAGA
1 TTTGAGAGAAATTTAAGAGAATA-TTGAAAGA
*
115930506 TTTGAGAGAAATTTGAGAGAATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAATATTGAAAGA
115930537 TT
1 TT
115930539 GAAGATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAATATTGAAAGA
Found at i:115930532 original size:11 final size:11
Alignment explanation
Indices: 115930475--115930526 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
115930465 TAACGAGAGT
*
115930475 TTTGAGAGGAA
1 TTTGAGAGAAA
*
115930486 TTTAAGAGAAA
1 TTTGAGAGAAA
*
115930497 TTTGA-A-AGA
1 TTTGAGAGAAA
115930506 TTTGAGAGAAA
1 TTTGAGAGAAA
115930517 TTTGAGAGAA
1 TTTGAGAGAA
115930527 TATTGAAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.21
10 2 0.06
11 25 0.74
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:115932138 original size:55 final size:55
Alignment explanation
Indices: 115932065--115932208 Score: 207
Period size: 55 Copynumber: 2.6 Consensus size: 55
115932055 ACTGATTGTT
* * * *
115932065 ATGTTGGAATATTGCTTCTTTTGAATCGATTTTTTTTATGTTTAAATTGACTGTC
1 ATGTTGGAATACTGCTTCTTTTGAATCGATTGTTTATATGTTTAAATAGACTGTC
* * *
115932120 ATGTTGGAATACTACTTCTTTTTAATCGATTGTTTATATGTTTAAATAGATTGTC
1 ATGTTGGAATACTGCTTCTTTTGAATCGATTGTTTATATGTTTAAATAGACTGTC
* *
115932175 ATATTGGAATACCGCTTCTTTTGAATCGATTGTT
1 ATGTTGGAATACTGCTTCTTTTGAATCGATTGTT
115932209 ATAGTGGAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 78 1.00
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.49
Consensus pattern (55 bp):
ATGTTGGAATACTGCTTCTTTTGAATCGATTGTTTATATGTTTAAATAGACTGTC
Found at i:115933390 original size:14 final size:14
Alignment explanation
Indices: 115933371--115933400 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
115933361 CACAATTATT
115933371 TATATTTTTAAAAA
1 TATATTTTTAAAAA
*
115933385 TATATTTTTTAAAA
1 TATATTTTTAAAAA
115933399 TA
1 TA
115933401 AATATAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATATTTTTAAAAA
Found at i:115933663 original size:20 final size:21
Alignment explanation
Indices: 115933624--115933663 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
115933614 GCCATTTTCT
* *
115933624 TTAAGTTAGTGTGGAATTGAA
1 TTAAATTAGTGTGAAATTGAA
115933645 TTAAATTAG-GTGAAATTGA
1 TTAAATTAGTGTGAAATTGA
115933664 CTTTAAGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (21 bp):
TTAAATTAGTGTGAAATTGAA
Found at i:115933669 original size:21 final size:22
Alignment explanation
Indices: 115933622--115933669 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
115933612 TTGCCATTTT
* *
115933622 CTTTAAGTTAGTGTGGAATTGA
1 CTTTAAATTAGTGTGAAATTGA
*
115933644 -ATTAAATTAG-GTGAAATTGA
1 CTTTAAATTAGTGTGAAATTGA
115933664 CTTTAA
1 CTTTAA
115933670 GGATTAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (22 bp):
CTTTAAATTAGTGTGAAATTGA
Found at i:115933951 original size:2 final size:2
Alignment explanation
Indices: 115933944--115933968 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
115933934 ATTTAAAAAT
115933944 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
115933969 GTTGATATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:115934054 original size:23 final size:22
Alignment explanation
Indices: 115934013--115934055 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
115934003 GTGGAGTCAA
**
115934013 AAATTTATATATATTTATTTAT
1 AAATTTATATATAAATATTTAT
115934035 AAATTTATTATATAAATATTT
1 AAATTTA-TATATAAATATTT
115934056 TTACTATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
AAATTTATATATAAATATTTAT
Found at i:115935303 original size:14 final size:15
Alignment explanation
Indices: 115935284--115935313 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
115935274 CAACTGAAAT
115935284 AATTTA-TTTAATTA
1 AATTTATTTTAATTA
115935298 AATTTATTTTAATTA
1 AATTTATTTTAATTA
115935313 A
1 A
115935314 TCTAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AATTTATTTTAATTA
Found at i:115936597 original size:24 final size:24
Alignment explanation
Indices: 115936569--115936614 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
115936559 AAATAATTAA
115936569 AATATT-GTAATAATTATTTATAAT
1 AATATTAGTAATAA-TATTTATAAT
*
115936593 AATATTAGTACTAATATTTATA
1 AATATTAGTAATAATATTTATA
115936615 CTATTAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (24 bp):
AATATTAGTAATAATATTTATAAT
Found at i:115938184 original size:15 final size:15
Alignment explanation
Indices: 115938164--115938192 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
115938154 TTAATAATTT
115938164 TTAAAAAAATTTAAA
1 TTAAAAAAATTTAAA
115938179 TTAAAAAAATTTAA
1 TTAAAAAAATTTAA
115938193 TATATTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTAAAAAAATTTAAA
Found at i:115941016 original size:12 final size:11
Alignment explanation
Indices: 115940989--115941023 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
115940979 TATATATATT
115940989 TAAAAATAATA
1 TAAAAATAATA
115941000 TAAAAATAATA
1 TAAAAATAATA
115941011 TAAAAATTAATA
1 TAAAAA-TAATA
115941023 T
1 T
115941024 GGCCGGGTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:115953734 original size:20 final size:20
Alignment explanation
Indices: 115953705--115953748 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
115953695 AAAAATAAAA
* *
115953705 TAAAAGTAATTTTCAAATTT
1 TAAAAATAATTTTCAAAATT
*
115953725 TAAAAATAATTTTTAAAATT
1 TAAAAATAATTTTCAAAATT
115953745 TAAA
1 TAAA
115953749 CTATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
TAAAAATAATTTTCAAAATT
Found at i:115953738 original size:21 final size:20
Alignment explanation
Indices: 115953705--115953745 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
115953695 AAAAATAAAA
* *
115953705 TAAAAGTAATTTTCAAATTT
1 TAAAAATAATTTTAAAATTT
115953725 TAAAAATAATTTTTAAAATTT
1 TAAAAATAA-TTTTAAAATTT
115953746 AAACTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
TAAAAATAATTTTAAAATTT
Found at i:115953814 original size:20 final size:19
Alignment explanation
Indices: 115953778--115953836 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 19
115953768 AATTTGTATA
115953778 TTTAAAAAATTATAAAATTT
1 TTTAAAAAATTA-AAAATTT
* *
115953798 TTTAAAAAATCTAAAAAATA
1 TTTAAAAAAT-TAAAAATTT
* *
115953818 TATAAAAATTTAAAAATTT
1 TTTAAAAAATTAAAAATTT
115953837 AATAAAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 7 0.22
20 23 0.72
21 2 0.06
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTAAAAAATTAAAAATTT
Found at i:115953841 original size:19 final size:19
Alignment explanation
Indices: 115953739--115953843 Score: 52
Period size: 19 Copynumber: 5.2 Consensus size: 19
115953729 AATAATTTTT
*
115953739 AAAATTTAAACTATTT-ATA
1 AAAATTTAAA-AATTTAATA
*
115953758 AAAATTCTAAAATTTGTATATTTA
1 AAAATT-TAAAAATT-TA-A--TA
* **
115953782 AAAAATTATAAAATTTTTTAA
1 AAAATTTA-AAAATTTAAT-A
* *
115953803 AAAATCTAAAAA-ATATATA
1 AAAATTTAAAAATTTA-ATA
115953822 AAAATTTAAAAATTTAATA
1 AAAATTTAAAAATTTAATA
115953841 AAA
1 AAA
115953844 TAATAATTTT
Statistics
Matches: 63, Mismatches: 13, Indels: 20
0.66 0.14 0.21
Matches are distributed among these distances:
19 27 0.43
20 13 0.21
21 7 0.11
22 1 0.02
23 3 0.05
24 12 0.19
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (19 bp):
AAAATTTAAAAATTTAATA
Found at i:115958641 original size:23 final size:23
Alignment explanation
Indices: 115958582--115958641 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
115958572 ACTGAAAATT
*
115958582 GTCGTAGCGAATAACTGAACACC
1 GTCGAAGCGAATAACTGAACACC
*
115958605 GTTGAAGCTG-ATAACTGAACACC
1 GTCGAAGC-GAATAACTGAACACC
*
115958628 GTCGACGCGAATAA
1 GTCGAAGCGAATAA
115958642 ACAATAAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (23 bp):
GTCGAAGCGAATAACTGAACACC
Found at i:115960373 original size:17 final size:17
Alignment explanation
Indices: 115960338--115960376 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
115960328 ATATATGTTA
*
115960338 TATTGTTGGAATTGAAT
1 TATTGTTGGAAATGAAT
115960355 TATTGTTGGAAAT-ATAT
1 TATTGTTGGAAATGA-AT
115960372 TATTG
1 TATTG
115960377 AATTTAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAAATGAAT
Found at i:115964122 original size:57 final size:58
Alignment explanation
Indices: 115964059--115964173 Score: 153
Period size: 60 Copynumber: 2.0 Consensus size: 58
115964049 TTTCATACTC
* *
115964059 ATTTTCATTTTGG-AGAAAACCACATTCATTTCCAAATGATT-CTATTTCTCCATTTTA
1 ATTTTCATTTTGGAAAAAAACCACATTCATTT-CAAATGATTCCCATTTCTCCATTTTA
* *
115964116 ATTTTCATTTTGGAAAAAAAAACCATATTCATTTCAAATGTTTCCCATTTCTCCATTT
1 ATTTTCATTTTGG--AAAAAAACCACATTCATTTCAAATGATTCCCATTTCTCCATTT
115964174 CTATTCATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
57 13 0.26
59 8 0.16
60 29 0.58
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.43
Consensus pattern (58 bp):
ATTTTCATTTTGGAAAAAAACCACATTCATTTCAAATGATTCCCATTTCTCCATTTTA
Found at i:115967851 original size:3 final size:3
Alignment explanation
Indices: 115967843--115968007 Score: 98
Period size: 3 Copynumber: 53.3 Consensus size: 3
115967833 TCCCATTTCT
* * * * *
115967843 TTA TTA TTA CTA TTA TCA TTA TTA TTTG TTGC TTGA TATA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT-A TT-A T-TA TTA TTA TTA
* ** * *
115967892 TTA TTT TTA TCC TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
115967940 TTA TTA TTA TTA CTA TTA CTTGA -TA CTA TCA TTA CTA TTA TTA TTC
1 TTA TTA TTA TTA TTA TTA -TT-A TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
115967986 TAA TTA CCA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
115968008 ATATATACAT
Statistics
Matches: 122, Mismatches: 34, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
2 1 0.01
3 109 0.89
4 10 0.08
5 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:115968093 original size:87 final size:87
Alignment explanation
Indices: 115968002--115968181 Score: 351
Period size: 87 Copynumber: 2.1 Consensus size: 87
115967992 CCATTATTAC
*
115968002 TATTATATATATACATACCTTTTATTATTATTCATGTACATATATTTTAAATATTATTACCATTA
1 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
115968067 TTATTTTTATCACTTACATGGT
66 TTATTTTTATCACTTACATGGT
115968089 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
1 TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
115968154 TTATTTTTATCACTTACATGGT
66 TTATTTTTATCACTTACATGGT
115968176 TATTAT
1 TATTAT
115968182 TATTCTATTA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (87 bp):
TATTATATATATACATACCTTTTACTATTATTCATGTACATATATTTTAAATATTATTACCATTA
TTATTTTTATCACTTACATGGT
Found at i:115968404 original size:25 final size:26
Alignment explanation
Indices: 115968339--115968404 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
115968329 TCGTTTCTAT
115968339 TATTA-TATATATTTTAATACCATATG
1 TATTATTAT-TATTTTAATACCATATG
** *
115968365 TATTATTATCGTTTT-ATACTAT-TG
1 TATTATTATTATTTTAATACCATATG
115968389 CTATTATTATTATTTT
1 -TATTATTATTATTTT
115968405 CGTCATCATC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
24 2 0.06
25 19 0.58
26 9 0.27
27 3 0.09
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.58
Consensus pattern (26 bp):
TATTATTATTATTTTAATACCATATG
Found at i:115971984 original size:23 final size:23
Alignment explanation
Indices: 115971953--115971998 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
115971943 TTAAAAGTCG
*
115971953 ATAACACATG-TCGCCAACTGATT
1 ATAACACATGAT-ACCAACTGATT
*
115971976 ATAATACATGATACCAACTGATT
1 ATAACACATGATACCAACTGATT
115971999 GTGACAGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (23 bp):
ATAACACATGATACCAACTGATT
Found at i:115972393 original size:2 final size:2
Alignment explanation
Indices: 115972380--115972412 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
115972370 GCTATTTCTT
*
115972380 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
115972413 TAAATAGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:115973582 original size:5 final size:5
Alignment explanation
Indices: 115973567--115973601 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
115973557 GGAGAATATT
*
115973567 TTTAA -TTAA TTTAA TTTAA TTTAA TTTAT TTTAA T
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA T
115973602 ATTATACTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:115974724 original size:27 final size:27
Alignment explanation
Indices: 115974694--115974756 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
115974684 GTAAAAATAG
* *
115974694 AAAAAAAACA-ATATTGGGTAATTTTTT
1 AAAAAAAACATA-AGTGGATAATTTTTT
* * *
115974721 AAAAATAGCTTAAGTGGATAATTTTTT
1 AAAAAAAACATAAGTGGATAATTTTTT
115974748 AAAAAAAAC
1 AAAAAAAAC
115974757 GACATTTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.33
Consensus pattern (27 bp):
AAAAAAAACATAAGTGGATAATTTTTT
Found at i:115980913 original size:12 final size:12
Alignment explanation
Indices: 115980898--115980924 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
115980888 GCCGGAGCGA
115980898 CGGCCGGCACGG
1 CGGCCGGCACGG
115980910 CGGCCGGCACGG
1 CGGCCGGCACGG
115980922 CGG
1 CGG
115980925 TGACCGGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.41, G:0.52, T:0.00
Consensus pattern (12 bp):
CGGCCGGCACGG
Found at i:115981507 original size:17 final size:17
Alignment explanation
Indices: 115981487--115981541 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
115981477 CAATATTATA
115981487 TTTTATTATTGTTGTAT
1 TTTTATTATTGTTGTAT
**
115981504 TTTTATTATAATAT-TAT
1 TTTTATTATTGT-TGTAT
*
115981521 ATTTTATTACTGTTGTAT
1 -TTTTATTATTGTTGTAT
115981539 TTT
1 TTT
115981542 AATACTTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 17 0.57
18 13 0.43
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (17 bp):
TTTTATTATTGTTGTAT
Found at i:115981785 original size:27 final size:27
Alignment explanation
Indices: 115981755--115981816 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 27
115981745 TAATATCACC
*
115981755 ATATATTTATTTTCAAC-ATA-TATGT
1 ATATATATATTTTCAACTATATTATGT
*
115981780 ATATATATATTTTTAACTATATTATGT
1 ATATATATATTTTCAACTATATTATGT
115981807 AT-TACTATAT
1 ATATA-TATAT
115981817 CTACATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 15 0.47
26 5 0.16
27 12 0.38
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.53
Consensus pattern (27 bp):
ATATATATATTTTCAACTATATTATGT
Found at i:115985605 original size:22 final size:24
Alignment explanation
Indices: 115985562--115985606 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
115985552 AAAATTTACA
*
115985562 TTTTATATATTATTATCTTAGTTT
1 TTTTATATATTATTATCATAGTTT
*
115985586 TTTTCTATATT-TT-TCATAGTT
1 TTTTATATATTATTATCATAGTT
115985607 ACCTTTCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 2 0.11
24 10 0.53
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTTATATATTATTATCATAGTTT
Found at i:116005711 original size:21 final size:22
Alignment explanation
Indices: 116005681--116005724 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
116005671 ATCAACAATA
116005681 TAATGATTTT-ACCTTTTAACT
1 TAATGATTTTGACCTTTTAACT
* *
116005702 TAATGGTTTTGACTTTTTAACT
1 TAATGATTTTGACCTTTTAACT
116005724 T
1 T
116005725 TAGAAAAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (22 bp):
TAATGATTTTGACCTTTTAACT
Found at i:116010557 original size:12 final size:12
Alignment explanation
Indices: 116010542--116010566 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
116010532 CCACATTATC
116010542 ATTTAACAGAAA
1 ATTTAACAGAAA
116010554 ATTTAACAGAAA
1 ATTTAACAGAAA
116010566 A
1 A
116010567 ACTAATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATTTAACAGAAA
Found at i:116012870 original size:6 final size:6
Alignment explanation
Indices: 116012859--116012885 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
116012849 TAGTTTAGGA
116012859 TCCGAC TCCGAC TCCGAC TCCGAC TCC
1 TCCGAC TCCGAC TCCGAC TCCGAC TCC
116012886 TAATCTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.15, T:0.19
Consensus pattern (6 bp):
TCCGAC
Found at i:116013719 original size:22 final size:22
Alignment explanation
Indices: 116013694--116013738 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
116013684 TTTAATAAAA
116013694 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
116013716 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
116013738 A
1 A
116013739 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:116018315 original size:22 final size:22
Alignment explanation
Indices: 116018290--116018334 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
116018280 TTTAATAAAA
116018290 AAAATATTTACAAAATATTCCT
1 AAAATATTTACAAAATATTCCT
*
116018312 AAAATATTTACAGAATATTCCT
1 AAAATATTTACAAAATATTCCT
116018334 A
1 A
116018335 CAGATAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATATTTACAAAATATTCCT
Found at i:116019971 original size:33 final size:33
Alignment explanation
Indices: 116019925--116019998 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 33
116019915 TCAAAAGAAC
* **
116019925 AAAT-TTTGTAAATGTTTTGTTAGTAGCTTTAG
1 AAATATTTGTAAATGATTCATTAGTAGCTTTAG
116019957 AAATATTTGTAAATGATTCATTAGTAGCTTTAG
1 AAATATTTGTAAATGATTCATTAGTAGCTTTAG
116019990 AAATATTTG
1 AAATATTTG
116019999 CCTTAATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
32 4 0.11
33 34 0.89
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (33 bp):
AAATATTTGTAAATGATTCATTAGTAGCTTTAG
Found at i:116024660 original size:18 final size:18
Alignment explanation
Indices: 116024614--116024661 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
116024604 AACAAATCAT
116024614 TAACTTATT-TTTGAAAAA
1 TAAC-TATTATTTGAAAAA
116024632 TAA-TATGTTATTTGAAAAA
1 TAACTA--TTATTTGAAAAA
116024651 TAACTATTATT
1 TAACTATTATT
116024662 GTAATGAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.08
18 10 0.38
19 12 0.46
20 2 0.08
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (18 bp):
TAACTATTATTTGAAAAA
Found at i:116026079 original size:11 final size:12
Alignment explanation
Indices: 116026056--116026085 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
116026046 TTCAAATATT
116026056 AAAAATTAGGGA
1 AAAAATTAGGGA
116026068 AAAAATTA-GGA
1 AAAAATTAGGGA
116026079 AAAAATT
1 AAAAATT
116026086 GTAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (12 bp):
AAAAATTAGGGA
Found at i:116026215 original size:20 final size:20
Alignment explanation
Indices: 116026159--116026218 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
116026149 TGTTATAAAG
*
116026159 TCGTAAGAAAATTATACAAAA
1 TCGTAAAAAAATTATA-AAAA
* **
116026180 T-GTAAAGAAA-TATAAATT
1 TCGTAAAAAAATTATAAAAA
116026198 TCGTAAAAAAATTATAAAAA
1 TCGTAAAAAAATTATAAAAA
116026218 T
1 T
116026219 TATAGTACCA
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 3 0.10
19 12 0.40
20 14 0.47
21 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.28
Consensus pattern (20 bp):
TCGTAAAAAAATTATAAAAA
Found at i:116026426 original size:9 final size:10
Alignment explanation
Indices: 116026405--116026459 Score: 58
Period size: 10 Copynumber: 5.3 Consensus size: 10
116026395 TTTTGATGCA
116026405 TTTTATAATT
1 TTTTATAATT
116026415 TTTTATAATT
1 TTTTATAATT
116026425 TTTTAAATAATT
1 TTTT--ATAATT
* *
116026437 TTTTAAAGAAT
1 TTTTATA-ATT
116026448 TTTTA-AATT
1 TTTTATAATT
116026457 TTT
1 TTT
116026460 AAGTTTTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 5 0.13
10 17 0.44
11 7 0.18
12 10 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:116026434 original size:12 final size:12
Alignment explanation
Indices: 116026409--116026455 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
116026399 GATGCATTTT
116026409 ATAATTTTTT--
1 ATAATTTTTTAA
116026419 ATAATTTTTTAA
1 ATAATTTTTTAA
116026431 ATAATTTTTTAA
1 ATAATTTTTTAA
*
116026443 AGAA-TTTTTAA
1 ATAATTTTTTAA
116026454 AT
1 AT
116026456 TTTTAAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 10 0.30
11 8 0.24
12 15 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (12 bp):
ATAATTTTTTAA
Found at i:116026437 original size:22 final size:23
Alignment explanation
Indices: 116026409--116026455 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
116026399 GATGCATTTT
* *
116026409 ATAATTTTTTATA-ATTTTTTAA
1 ATAATTTTTTAAAGAATTTTTAA
116026431 ATAATTTTTTAAAGAATTTTTAA
1 ATAATTTTTTAAAGAATTTTTAA
116026454 AT
1 AT
116026456 TTTTAAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
ATAATTTTTTAAAGAATTTTTAA
Found at i:116026688 original size:81 final size:83
Alignment explanation
Indices: 116026538--116026725 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 83
116026528 AAGAGTAGGG
* ** * * * *
116026538 GCTTAATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTTATGCATTTTGAAAGTTCAAGTACCCA
1 GCTTAATTGCTTTTTTTAAAAAGCTTGAGAGTCCTTTTTATGCATCTTAAAAGTTCAAGTACCCA
116026603 ATTGAGTG-AAAAAAAAA
66 ATTGAGTGTAAAAAAAAA
* * * *
116026620 GCTTAATTGCTTTTTTTAAAAAGCTTGAGAG-CCTTTTTATGTATCTTAAAAGTTCAAGTGCTCG
1 GCTTAATTGCTTTTTTTAAAAAGCTTGAGAGTCCTTTTTATGCATCTTAAAAGTTCAAGTACCCA
*
116026684 ATTGAGTGTTAAAAAAAAG
66 ATTGAGTG-TAAAAAAAAA
116026703 GCTTAATTGCTTCTTTTTAAAAA
1 GCTTAATTGCTT-TTTTTAAAAA
116026726 AAAATTTTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
81 34 0.37
82 27 0.30
83 20 0.22
84 10 0.11
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (83 bp):
GCTTAATTGCTTTTTTTAAAAAGCTTGAGAGTCCTTTTTATGCATCTTAAAAGTTCAAGTACCCA
ATTGAGTGTAAAAAAAAA
Found at i:116026786 original size:20 final size:20
Alignment explanation
Indices: 116026761--116026813 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
116026751 CTTAAGCATG
*
116026761 ATATATATT-ATTAATTAAAA
1 ATATATATTAAATAATT-AAA
*
116026781 ATATATTTTAAATAATTAAA
1 ATATATATTAAATAATTAAA
*
116026801 ATATATGTTAAAT
1 ATATATATTAAAT
116026814 TAAATTGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 23 0.79
21 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATATATATTAAATAATTAAA
Found at i:116026798 original size:21 final size:20
Alignment explanation
Indices: 116026772--116026813 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
116026762 TATATATTAT
*
116026772 TAATTAAAAATATATTTTAAA
1 TAATT-AAAATATATGTTAAA
116026793 TAATTAAAATATATGTTAAA
1 TAATTAAAATATATGTTAAA
116026813 T
1 T
116026814 TAAATTGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
TAATTAAAATATATGTTAAA
Found at i:116031244 original size:11 final size:11
Alignment explanation
Indices: 116031228--116031266 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
116031218 TTCTTTCGAA
116031228 TCTTTTTTCTT
1 TCTTTTTTCTT
116031239 TCTTTTTGT-TT
1 TCTTTTT-TCTT
116031250 T-TTTTTTCTT
1 TCTTTTTTCTT
116031260 TCTTTTT
1 TCTTTTT
116031267 ATATACATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 1 0.04
10 8 0.32
11 15 0.60
12 1 0.04
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.85
Consensus pattern (11 bp):
TCTTTTTTCTT
Found at i:116031982 original size:11 final size:11
Alignment explanation
Indices: 116031958--116032000 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
116031948 TTCTAATACG
*
116031958 TATATATATTA
1 TATATATTTTA
*
116031969 TATGTATTTTA
1 TATATATTTTA
* *
116031980 TATATATTATG
1 TATATATTTTA
116031991 TATATATTTT
1 TATATATTTT
116032001 TCTAATGCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:116032207 original size:2 final size:2
Alignment explanation
Indices: 116032200--116032231 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
116032190 TTTTATGTAC
116032200 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116032232 TTGTACATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116036390 original size:19 final size:18
Alignment explanation
Indices: 116036349--116036395 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
116036339 GTATAAAATT
116036349 ATTAAATATTAAAATAAA
1 ATTAAATATTAAAATAAA
116036367 A-TAAATATTTTAAAA-AAA
1 ATTAAATA--TTAAAATAAA
116036385 ATTAAA-ATTAA
1 ATTAAATATTAA
116036396 TATTGGCGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 4 0.15
17 6 0.23
18 6 0.23
19 10 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTAAATATTAAAATAAA
Found at i:116038180 original size:12 final size:12
Alignment explanation
Indices: 116038163--116038188 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
116038153 TATCTATGTA
116038163 TAAGAATTAATT
1 TAAGAATTAATT
116038175 TAAGAATTAATT
1 TAAGAATTAATT
116038187 TA
1 TA
116038189 TTATTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
TAAGAATTAATT
Found at i:116041072 original size:3 final size:3
Alignment explanation
Indices: 116041064--116041117 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
116041054 TAAAGCATTC
116041064 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
116041112 TAT TAT
1 TAT TAT
116041118 GTCAAAACAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:116043746 original size:5 final size:5
Alignment explanation
Indices: 116043737--116043772 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
116043727 AAAAGTAACA
* *
116043737 AAAAA AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
116043773 GAATGCTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:116044185 original size:21 final size:21
Alignment explanation
Indices: 116044161--116044208 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
116044151 CATTTTGTTT
*
116044161 ATTTTGTTTATTTGTAACTTG
1 ATTTTGTTCATTTGTAACTTG
* *
116044182 ATTTAGTTCATTTGTAATTTG
1 ATTTTGTTCATTTGTAACTTG
116044203 ACTTTT
1 A-TTTT
116044209 AAAGTTAGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.60
Consensus pattern (21 bp):
ATTTTGTTCATTTGTAACTTG
Found at i:116047738 original size:18 final size:19
Alignment explanation
Indices: 116047671--116047738 Score: 67
Period size: 18 Copynumber: 3.7 Consensus size: 19
116047661 GTTTACTTAT
116047671 ATTATAAGTAAATAATAATA
1 ATTATAAGTAAAT-ATAATA
116047691 ATTACT-A--AAATATAATA
1 ATTA-TAAGTAAATATAATA
116047708 A-TATAA-TATAATATAATA
1 ATTATAAGTA-AATATAATA
116047726 ATTA-AAGTAAATA
1 ATTATAAGTAAATA
116047739 AAAGAAATAG
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
15 1 0.02
16 3 0.07
17 8 0.19
18 20 0.48
19 4 0.10
20 5 0.12
21 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (19 bp):
ATTATAAGTAAATATAATA
Found at i:116053685 original size:36 final size:36
Alignment explanation
Indices: 116053638--116053717 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
116053628 GAACTAATTT
116053638 TCTTCCTCTGAATAATCATCACTGTTGCTTTGATCA
1 TCTTCCTCTGAATAATCATCACTGTTGCTTTGATCA
*
116053674 TCTTCCTCTGAATAATCCTCACTGTTGCTTTGATCA
1 TCTTCCTCTGAATAATCATCACTGTTGCTTTGATCA
116053710 TCTTCCTC
1 TCTTCCTC
116053718 CGATTCATCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42
Consensus pattern (36 bp):
TCTTCCTCTGAATAATCATCACTGTTGCTTTGATCA
Found at i:116060082 original size:45 final size:45
Alignment explanation
Indices: 116060018--116060123 Score: 149
Period size: 45 Copynumber: 2.4 Consensus size: 45
116060008 GTAACGGTAG
* * *
116060018 CAGTAACAGTAACAGTATTCAACATACAAAGTGTTAAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGTCAAATCAGTAA
* * *
116060063 CAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGTCAAATCAGTAA
*
116060108 CGGTAACAGTAACAGT
1 CAGTAACAGTAACAGT
116060124 TGTTGTAGGC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.23
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTGTCAAATCAGTAA
Found at i:116060259 original size:16 final size:16
Alignment explanation
Indices: 116060238--116060269 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
116060228 GCCCAATAAC
*
116060238 CTAAACTACCAGCCCA
1 CTAAACTAACAGCCCA
116060254 CTAAACTAACAGCCCA
1 CTAAACTAACAGCCCA
116060270 TTACACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.41, G:0.06, T:0.12
Consensus pattern (16 bp):
CTAAACTAACAGCCCA
Found at i:116061528 original size:13 final size:13
Alignment explanation
Indices: 116061510--116061534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
116061500 ATTAATAATA
116061510 ATATATGTATATT
1 ATATATGTATATT
116061523 ATATATGTATAT
1 ATATATGTATAT
116061535 ATTCGTACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
ATATATGTATATT
Found at i:116061753 original size:12 final size:13
Alignment explanation
Indices: 116061728--116061839 Score: 69
Period size: 14 Copynumber: 8.8 Consensus size: 13
116061718 TAAGTTCTTA
116061728 ATAT-TATATT-T
1 ATATATATATTAT
116061739 -TATATATATTAT
1 ATATATATATTAT
116061751 -TATATATATT-T
1 ATATATATATTAT
116061762 -TA-ATATCATTAGT
1 ATATATAT-ATTA-T
* * * *
116061775 CATATTTTTCTTTT
1 -ATATATATATTAT
116061789 ATACTATATA-TAT
1 ATA-TATATATTAT
*
116061802 AGATATATATCTAT
1 ATATATATAT-TAT
116061816 ATATATATATATAT
1 ATATATATAT-TAT
116061830 ATATATATAT
1 ATATATATAT
116061840 CTAATATTAT
Statistics
Matches: 79, Mismatches: 11, Indels: 19
0.72 0.10 0.17
Matches are distributed among these distances:
10 7 0.09
11 12 0.15
12 17 0.22
13 8 0.10
14 29 0.37
15 4 0.05
16 2 0.03
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.54
Consensus pattern (13 bp):
ATATATATATTAT
Found at i:116061800 original size:2 final size:2
Alignment explanation
Indices: 116061788--116061839 Score: 77
Period size: 2 Copynumber: 25.5 Consensus size: 2
116061778 ATTTTTCTTT
* *
116061788 TA TA CTA TA TA TA TA GA TA TA TA TC TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
116061831 TA TA TA TA T
1 TA TA TA TA T
116061840 CTAATATTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 43 0.96
3 2 0.04
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:116079260 original size:17 final size:17
Alignment explanation
Indices: 116079227--116079260 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
116079217 AATGGATTTG
*
116079227 TAAATTTTGAGATATAA
1 TAAATTTTGAGAGATAA
*
116079244 TAAATTTTGTGAGATAA
1 TAAATTTTGAGAGATAA
116079261 GGTCAGAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (17 bp):
TAAATTTTGAGAGATAA
Found at i:116088174 original size:15 final size:15
Alignment explanation
Indices: 116088154--116088185 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
116088144 AAATAATAAT
*
116088154 TTATATATATTTATC
1 TTATATACATTTATC
116088169 TTATATACATTTATC
1 TTATATACATTTATC
116088184 TT
1 TT
116088186 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:116089052 original size:14 final size:14
Alignment explanation
Indices: 116089026--116089070 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
116089016 TAAACCTGCT
*
116089026 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
116089040 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
116089054 TAAACCTTAAACTA
1 TAAACCTTAAACCA
116089068 TAA
1 TAA
116089071 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:116089362 original size:40 final size:41
Alignment explanation
Indices: 116089227--116089402 Score: 241
Period size: 41 Copynumber: 4.3 Consensus size: 41
116089217 GTTATATGAC
116089227 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
116089268 TTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
116089309 TTTTAGCGGCGTTTTACCAAAAGTGCCGTTAATAG-TCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAAT-GCTCTGGT
** * *
116089349 TTTTAGCGGCGTTTTAGTAAAAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTA--CCAAAAGCGCCGCTAATGCTCTGGT
116089391 TTTTAGCGGCGT
1 TTTTAGCGGCGT
116089403 AAAAAACGCC
Statistics
Matches: 121, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
40 18 0.15
41 74 0.61
42 29 0.24
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:116090623 original size:24 final size:25
Alignment explanation
Indices: 116090596--116090647 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
116090586 GCCTAGCCTC
116090596 TTTTGAT-AACTGGGGCAAAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
*
116090620 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
116090645 TTT
1 TTT
116090648 CGCACTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (25 bp):
TTTTGATAAACTGGGGCAAAGCCCT
Found at i:116090717 original size:11 final size:11
Alignment explanation
Indices: 116090681--116090745 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
116090671 ACCCAACCCA
*
116090681 TGCATATAATG
1 TGCATATCATG
* *
116090692 AGTATATCAT-
1 TGCATATCATG
*
116090702 AGCATATCATG
1 TGCATATCATG
*
116090713 TGCATCTCAT-
1 TGCATATCATG
**
116090723 AACATATCATG
1 TGCATATCATG
116090734 TGCATATCATG
1 TGCATATCATG
116090745 T
1 T
116090746 ATAATAATAT
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
10 16 0.39
11 25 0.61
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (11 bp):
TGCATATCATG
Found at i:116090722 original size:21 final size:21
Alignment explanation
Indices: 116090695--116090743 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
116090685 TATAATGAGT
*
116090695 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
*
116090716 ATCTCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
116090737 ATATCAT
1 ATATCAT
116090744 GTATAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:116093835 original size:41 final size:41
Alignment explanation
Indices: 116093737--116093875 Score: 138
Period size: 41 Copynumber: 3.4 Consensus size: 41
116093727 GCGTTTTTAG
* * *
116093737 AAAACACCGCTAAAAAACAGAGCAATAGCCGCGTTTTAACAT
1 AAAACGCCGCTAAAAAACAGAGCAATAGCGGCATTTT-ACAT
116093779 AAAACGCCGCT-AAAAACAGAGCAATAGCGGCATTTT-CGAT
1 AAAACGCCGCTAAAAAACAGAGCAATAGCGGCATTTTAC-AT
* * ** * ***
116093819 AAAACGCCTCTAAAAAAAAGAGCTTTAGCGGCGTTTGTGTTT
1 AAAACGCCGCTAAAAAACAGAGCAATAGCGGCATTT-TACAT
116093861 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
116093876 GTCATATAAC
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 12 0.15
41 43 0.52
42 26 0.32
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAAACAGAGCAATAGCGGCATTTTACAT
Found at i:116093953 original size:23 final size:23
Alignment explanation
Indices: 116093915--116093963 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
116093905 AAAAAATCAT
* *
116093915 AAACACTAATCTAT-AACCCTTA
1 AAACACTAATCCATAAACCCTAA
116093937 AAACACTTAATCCATAAACCCTAA
1 AAACAC-TAATCCATAAACCCTAA
116093961 AAA
1 AAA
116093964 ACTCTAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 6 0.26
23 7 0.30
24 10 0.43
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (23 bp):
AAACACTAATCCATAAACCCTAA
Found at i:116094127 original size:7 final size:7
Alignment explanation
Indices: 116094114--116094178 Score: 58
Period size: 7 Copynumber: 9.1 Consensus size: 7
116094104 ATTTATTTTT
116094114 AGGTTTA
1 AGGTTTA
*
116094121 GGGTTTA
1 AGGTTTA
**
116094128 ATATTTA
1 AGGTTTA
116094135 AGGTTTA
1 AGGTTTA
*
116094142 AGGTCTA
1 AGGTTTA
*
116094149 TGGTTTA
1 AGGTTTA
*
116094156 GGGTTTTA
1 AGG-TTTA
*
116094164 TGGTTTA
1 AGGTTTA
116094171 AGGTTTA
1 AGGTTTA
116094178 A
1 A
116094179 TGGCCATGGG
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.25, C:0.02, G:0.28, T:0.46
Consensus pattern (7 bp):
AGGTTTA
Found at i:116094167 original size:15 final size:15
Alignment explanation
Indices: 116094131--116094181 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
116094121 GGGTTTAATA
*
116094131 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
116094145 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
116094160 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
116094175 TTAATGG
1 TTTATGG
116094182 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:116094512 original size:6 final size:7
Alignment explanation
Indices: 116094495--116094615 Score: 57
Period size: 7 Copynumber: 16.4 Consensus size: 7
116094485 AGGGGTAGAA
116094495 GTTTAGG
1 GTTTAGG
116094502 GTTTAGG
1 GTTTAGG
* *
116094509 TTTATATG
1 GTT-TAGG
*
116094517 GCTTAGG
1 GTTTAGG
116094524 GTTTAGGG
1 GTTTA-GG
* *
116094532 GTTAAGA
1 GTTTAGG
116094539 G-TTATGG
1 GTTTA-GG
*
116094546 GTTTACGA
1 GTTTA-GG
116094554 GTTATAGG
1 GTT-TAGG
116094562 GTTTAGG
1 GTTTAGG
*
116094569 ATTTAGG
1 GTTTAGG
* *
116094576 ATTTAAG
1 GTTTAGG
*
116094583 ATTTAGG
1 GTTTAGG
*
116094590 ATTTA-G
1 GTTTAGG
116094596 GTGTTATGG
1 GT-TTA-GG
116094605 GTTTTAGG
1 G-TTTAGG
116094613 GTT
1 GTT
116094616 AAACGGACAT
Statistics
Matches: 88, Mismatches: 17, Indels: 18
0.72 0.14 0.15
Matches are distributed among these distances:
6 4 0.05
7 52 0.59
8 24 0.27
9 7 0.08
10 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:116094557 original size:15 final size:16
Alignment explanation
Indices: 116094527--116094566 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
116094517 GCTTAGGGTT
* *
116094527 TAGGGGTTAAGAGTTA
1 TAGGGTTTACGAGTTA
116094543 T-GGGTTTACGAGTTA
1 TAGGGTTTACGAGTTA
116094558 TAGGGTTTA
1 TAGGGTTTA
116094567 GGATTTAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.25, C:0.03, G:0.35, T:0.38
Consensus pattern (16 bp):
TAGGGTTTACGAGTTA
Found at i:116094655 original size:111 final size:111
Alignment explanation
Indices: 116094519--116094771 Score: 280
Period size: 111 Copynumber: 2.3 Consensus size: 111
116094509 TTTATATGGC
* * * * * *
116094519 TTAGGGTTTAGGGGTTAAGAGTTATGGGTTTACGAGTTATAGGGTTTA-GGATT-TAG-GATTTA
1 TTAGGGGTTAAGGGTTAGGGGTTATGGGTTTAAGAGTTA-AGGGTTTACGGGTTAT-GTGATTTA
*
116094581 AGATTTAGGATTTAGGTGTTATGGGTTTTAGGGTTAAACGGACATGGG
64 AGATTTAGGATTTAGGTGTTATGGGTTTTAGGGTTAAACGGACATAGG
* * * * * *
116094629 TTAGGGGTTATGGATTTAGGGTTTATGGG-TTAAGAGTTAGGGGTTTACGGGTTATGTGGTTTAG
1 TTAGGGGTTAAGG-GTTAGGGGTTATGGGTTTAAGAGTTAAGGGTTTACGGGTTATGTGATTTAA
* * ** *
116094693 GGTTTAGTATTTAGGTGTTATGGGTTTTAGGGTTAAGGGGACATATG
65 GATTTAGGATTTAGGTGTTATGGGTTTTAGGGTTAAACGGACATAGG
*
116094740 TTAGGGGTTAAGGGTTAGGGGTTAGGGGTTTA
1 TTAGGGGTTAAGGGTTAGGGGTTATGGGTTTA
116094772 GGGTTTAGGG
Statistics
Matches: 117, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
109 7 0.06
110 37 0.32
111 73 0.62
ACGTcount: A:0.22, C:0.02, G:0.38, T:0.39
Consensus pattern (111 bp):
TTAGGGGTTAAGGGTTAGGGGTTATGGGTTTAAGAGTTAAGGGTTTACGGGTTATGTGATTTAAG
ATTTAGGATTTAGGTGTTATGGGTTTTAGGGTTAAACGGACATAGG
Found at i:116094658 original size:22 final size:22
Alignment explanation
Indices: 116094633--116094698 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
116094623 CATGGGTTAG
*
116094633 GGGTTATGGATTTAGGGTTTAT
1 GGGTTATGGATTTAGGGTTTAC
* *
116094655 GGGTTA-AGAGTTAGGGGTTTAC
1 GGGTTATGGATTTA-GGGTTTAC
*
116094677 GGGTTATGTGGTTTAGGGTTTA
1 GGGTTATG-GATTTAGGGTTTA
116094699 GTATTTAGGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 5 0.14
22 19 0.54
23 7 0.20
24 4 0.11
ACGTcount: A:0.18, C:0.02, G:0.39, T:0.41
Consensus pattern (22 bp):
GGGTTATGGATTTAGGGTTTAC
Found at i:116094749 original size:7 final size:7
Alignment explanation
Indices: 116094739--116094781 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
116094729 GGGGACATAT
116094739 GTTAGGG
1 GTTAGGG
*
116094746 GTTAAGG
1 GTTAGGG
116094753 GTTAGGG
1 GTTAGGG
116094760 GTTAGGG
1 GTTAGGG
116094767 GTTTAGGG
1 G-TTAGGG
*
116094775 TTTAGGG
1 GTTAGGG
116094782 TAATTAGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.33
Consensus pattern (7 bp):
GTTAGGG
Found at i:116094763 original size:21 final size:22
Alignment explanation
Indices: 116094739--116094781 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
116094729 GGGGACATAT
116094739 GTTAGGGGTTAAGGG-TTAGGG
1 GTTAGGGGTTAAGGGTTTAGGG
*
116094760 GTTAGGGGTTTAGGGTTTAGGG
1 GTTAGGGGTTAAGGGTTTAGGG
116094782 TAATTAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.33
Consensus pattern (22 bp):
GTTAGGGGTTAAGGGTTTAGGG
Found at i:116094774 original size:15 final size:15
Alignment explanation
Indices: 116094629--116094781 Score: 62
Period size: 15 Copynumber: 9.9 Consensus size: 15
116094619 CGGACATGGG
* *
116094629 TTAGGGGTTATGGAT
1 TTAGGGGTTAGGGGT
* *
116094644 TTAGGGTTTATGGG-
1 TTAGGGGTTAGGGGT
* *
116094658 TTAAGAGTTAGGGGT
1 TTAGGGGTTAGGGGT
* *
116094673 TTACGGGTTATGTGGT
1 TTAGGGGTTA-GGGGT
* **
116094689 TTAGGGTTTA-GTAT
1 TTAGGGGTTAGGGGT
* *
116094703 TTAGGTGTTATGGGTT
1 TTAGGGGTTA-GGGGT
116094719 TTA-GGGTTAAGGGGACATAT
1 TTAGGGGTT-AGGGG-----T
*
116094739 GTTAGGGGTTAAGGG-
1 -TTAGGGGTTAGGGGT
116094754 TTAGGGGTTAGGGGT
1 TTAGGGGTTAGGGGT
*
116094769 TTAGGGTTTAGGG
1 TTAGGGGTTAGGG
116094782 TAATTAGTGT
Statistics
Matches: 102, Mismatches: 23, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
14 32 0.31
15 39 0.38
16 18 0.18
20 1 0.01
21 7 0.07
22 5 0.05
ACGTcount: A:0.19, C:0.01, G:0.41, T:0.39
Consensus pattern (15 bp):
TTAGGGGTTAGGGGT
Found at i:116094909 original size:17 final size:17
Alignment explanation
Indices: 116094883--116094926 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
116094873 AATCTATATA
* *
116094883 TTAAATAATTTCAAATT
1 TTAAAAAATTTAAAATT
*
116094900 TTAAAGAA-TTAAAATT
1 TTAAAAAATTTAAAATT
116094916 TTAAAAAATTT
1 TTAAAAAATTT
116094927 TCAAGATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAAAAATTTAAAATT
Found at i:116094924 original size:26 final size:26
Alignment explanation
Indices: 116094895--116094944 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
116094885 AAATAATTTC
116094895 AAATTTTAAAGAATTAAAATTTTAAA
1 AAATTTTAAAGAATTAAAATTTTAAA
* * *
116094921 AAATTTTCAAGATTTCAAATTTTA
1 AAATTTTAAAGAATTAAAATTTTA
116094945 TCTAATTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (26 bp):
AAATTTTAAAGAATTAAAATTTTAAA
Found at i:116094997 original size:27 final size:26
Alignment explanation
Indices: 116094967--116095031 Score: 60
Period size: 28 Copynumber: 2.4 Consensus size: 26
116094957 AAATATTAGT
*
116094967 TAAATTTTAAAAAATTATTTATTTAAA
1 TAAATTTTAAAAAACTA-TTATTTAAA
** *
116094994 TAAAAAATTAAAATACTATTATTTAAA
1 T-AAATTTTAAAAAACTATTATTTAAA
116095021 -ATAATTTTAAA
1 TA-AATTTTAAA
116095032 GTTTTTTGAG
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
25 1 0.03
26 7 0.23
27 10 0.33
28 12 0.40
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TAAATTTTAAAAAACTATTATTTAAA
Found at i:116095078 original size:16 final size:17
Alignment explanation
Indices: 116095052--116095083 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
116095042 TATATAAGTG
116095052 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
116095069 ATTG-TTTTTAATTTA
1 ATTGTTTTTTAATTTA
116095084 AAAGGTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:116095466 original size:116 final size:116
Alignment explanation
Indices: 116095178--116095609 Score: 577
Period size: 115 Copynumber: 3.7 Consensus size: 116
116095168 AAAACGACAC
* * *
116095178 TGTTTTATTGGATTTGTTAGTGGCGTTTTG-TGTAAAACGCCGCAATAGGTGCGTTTTTAGAGGC
1 TGTTTTGTTGGA-TTATTAGTGGCGTTTTGAGGTAAAACGCCGCAATAGGTGCGTTTTTAGAGGC
* * **
116095242 ACTAGGGTATAAACGCCGCTAAAGGTGA-TTCCGTTTAAAACAAAACGGCAA
65 GCTAGGGTATAAACGCCGCTAAAGGTGATTTCAGTTTAAAACAAAACGGTGA
* * * * * * *
116095293 CGTCTTGTTGGATTATTAGTGGCGTTTT-AGGAAAAAACGCCTCAATTGGTGCATTTTTAGCGGC
1 TGTTTTGTTGGATTATTAGTGGCGTTTTGAGG-TAAAACGCCGCAATAGGTGCGTTTTTAGAGGC
116095357 GCTAGGGTATAAACGCCGCTAAAGGTGATTTCAG-TTAAAACAAAAACGGTGA
65 GCTAGGGTATAAACGCCGCTAAAGGTGATTTCAGTTTAAAAC-AAAACGGTGA
* * **
116095409 TGTTTTGTTGGATTATTAGTGGCGTTTTGAGGTTAAACGCCGCAATAGGTGCGTTTTTAGCGATG
1 TGTTTTGTTGGATTATTAGTGGCGTTTTGAGGTAAAACGCCGCAATAGGTGCGTTTTTAGAGGCG
* * ** *
116095474 CTAGGTTAAAAACGCTACTAAAGGTGATTT-GGTTTAAAACAAAACGGTGA
66 CTAGGGTATAAACGCCGCTAAAGGTGATTTCAGTTTAAAACAAAACGGTGA
* *
116095524 TGTTTTGTTGGATTATTAGTGGCATTTTGAGTTAAAACGCCGCAATAGGTGCGTTTTTAGAGGCG
1 TGTTTTGTTGGATTATTAGTGGCGTTTTGAGGTAAAACGCCGCAATAGGTGCGTTTTTAGAGGCG
116095589 CTAGGGTATAAACGCCGCTAA
66 CTAGGGTATAAACGCCGCTAA
116095610 TGTTAAATTA
Statistics
Matches: 273, Mismatches: 38, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
114 16 0.06
115 157 0.58
116 97 0.36
117 3 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.32
Consensus pattern (116 bp):
TGTTTTGTTGGATTATTAGTGGCGTTTTGAGGTAAAACGCCGCAATAGGTGCGTTTTTAGAGGCG
CTAGGGTATAAACGCCGCTAAAGGTGATTTCAGTTTAAAACAAAACGGTGA
Found at i:116095591 original size:231 final size:231
Alignment explanation
Indices: 116095178--116095609 Score: 607
Period size: 231 Copynumber: 1.9 Consensus size: 231
116095168 AAAACGACAC
* * *
116095178 TGTTTTATTGGATTTGTTAGTGGCGTTTTGTGTAAAACGCCGCAATAGGTGCGTTTTTAGAGGCA
1 TGTTTTATTGGATTTATTAGTGGCGTTTTGGGTAAAACGCCGCAATAGGTGCGTTTTTAGAGACA
* *
116095243 CTAGGGTATAAACGCCGCTAAAGGTGATTCCGTTTAAAACAAAACGGCAACGTCTTGTTGGATTA
66 CTAGGGTAAAAACGCCACTAAAGGTGATTCCGTTTAAAACAAAACGGCAACGTCTTGTTGGATTA
* * * *
116095308 TTAGTGGCGTTTTAGGAAAAAACGCCTCAATTGGTGCATTTTTAGCGGCGCTAGGGTATAAACGC
131 TTAGTGGCATTTTAGGAAAAAACGCCGCAATAGGTGCATTTTTAGAGGCGCTAGGGTATAAACGC
116095373 CGCTAAAGGTGATTTCAGTTAAAACAAAAACGGTGA
196 CGCTAAAGGTGATTTCAGTTAAAACAAAAACGGTGA
* * * *
116095409 TGTTTTGTTGGA-TTATTAGTGGCGTTTTGAGGTTAAACGCCGCAATAGGTGCGTTTTTAGCGAT
1 TGTTTTATTGGATTTATTAGTGGCGTTTTG-GGTAAAACGCCGCAATAGGTGCGTTTTTAGAGAC
* * * ** ** * *
116095473 GCTAGGTTAAAAACGCTACTAAAGGTGATTTGGTTTAAAACAAAACGGTGATGTTTTGTTGGATT
65 ACTAGGGTAAAAACGCCACTAAAGGTGATTCCGTTTAAAACAAAACGGCAACGTCTTGTTGGATT
** *
116095538 ATTAGTGGCATTTT-GAGTTAAAACGCCGCAATAGGTGCGTTTTTAGAGGCGCTAGGGTATAAAC
130 ATTAGTGGCATTTTAG-GAAAAAACGCCGCAATAGGTGCATTTTTAGAGGCGCTAGGGTATAAAC
116095602 GCCGCTAA
194 GCCGCTAA
116095610 TGTTAAATTA
Statistics
Matches: 174, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
230 17 0.10
231 157 0.90
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.32
Consensus pattern (231 bp):
TGTTTTATTGGATTTATTAGTGGCGTTTTGGGTAAAACGCCGCAATAGGTGCGTTTTTAGAGACA
CTAGGGTAAAAACGCCACTAAAGGTGATTCCGTTTAAAACAAAACGGCAACGTCTTGTTGGATTA
TTAGTGGCATTTTAGGAAAAAACGCCGCAATAGGTGCATTTTTAGAGGCGCTAGGGTATAAACGC
CGCTAAAGGTGATTTCAGTTAAAACAAAAACGGTGA
Found at i:116097176 original size:2 final size:2
Alignment explanation
Indices: 116097169--116097197 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
116097159 GATTACGATT
116097169 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
116097198 TTCTTTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:116097745 original size:20 final size:20
Alignment explanation
Indices: 116097720--116097773 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
116097710 GTGTTAAAAA
116097720 TAATTTAAATATAAAATAAG
1 TAATTTAAATATAAAATAAG
* * *
116097740 TAATTTTAATATTAAATGAG
1 TAATTTAAATATAAAATAAG
*
116097760 T-A-TTGAATATAAAA
1 TAATTTAAATATAAAA
116097774 AATATTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 10 0.34
19 1 0.03
20 18 0.62
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (20 bp):
TAATTTAAATATAAAATAAG
Found at i:116097935 original size:16 final size:16
Alignment explanation
Indices: 116097914--116097945 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
116097904 CCGAAATTCA
116097914 AAACAACTATAAATTT
1 AAACAACTATAAATTT
116097930 AAACAACTATAAATTT
1 AAACAACTATAAATTT
116097946 TCGTTGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (16 bp):
AAACAACTATAAATTT
Found at i:116098592 original size:9 final size:9
Alignment explanation
Indices: 116098580--116098614 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
116098570 ATCATATAAT
116098580 AACTTACAA
1 AACTTACAA
116098589 AACTTACAA
1 AACTTACAA
116098598 AACTTACAA
1 AACTTACAA
116098607 AACTTACA
1 AACTTACA
116098615 TAATACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (9 bp):
AACTTACAA
Found at i:116098654 original size:52 final size:52
Alignment explanation
Indices: 116098589--116098769 Score: 222
Period size: 52 Copynumber: 3.5 Consensus size: 52
116098579 TAACTTACAA
116098589 AACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATATCAT
1 AACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATATCAT
** *
116098641 AACTTACGTAACTTACAAAACTTACATAATACATAAATATATATCATATAAT
1 AACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATATCAT
* * * *
116098693 AACTTACAAAACTTACATAA--TACATACCTTATATAAATTTATATCATATCAT
1 AACTTACAAAACTTACAAAACTTACATA--ATACATAAATATATATCATATCAT
* * ** *
116098745 ATCTTGCGTAACATACAAAACTTAC
1 AACTTACAAAACTTACAAAACTTAC
116098770 TTAACTTACG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
50 6 0.06
52 100 0.92
54 3 0.03
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.33
Consensus pattern (52 bp):
AACTTACAAAACTTACAAAACTTACATAATACATAAATATATATCATATCAT
Found at i:116098664 original size:18 final size:18
Alignment explanation
Indices: 116098578--116098669 Score: 84
Period size: 18 Copynumber: 5.2 Consensus size: 18
116098568 ATATCATATA
116098578 ATAACTTACAAAACTTAC
1 ATAACTTACAAAACTTAC
*
116098596 AAAACTTACAAAACTTAC
1 ATAACTTACAAAACTTAC
*
116098614 ATAA--TACATAAA--TAT
1 ATAACTTACA-AAACTTAC
* * *
116098629 ATATCATATCATAACTTAC
1 ATAACTTA-CAAAACTTAC
*
116098648 GTAACTTACAAAACTTAC
1 ATAACTTACAAAACTTAC
116098666 ATAA
1 ATAA
116098670 TACATAAATA
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
15 5 0.09
16 4 0.07
17 7 0.12
18 34 0.60
19 7 0.12
ACGTcount: A:0.51, C:0.18, G:0.01, T:0.29
Consensus pattern (18 bp):
ATAACTTACAAAACTTAC
Found at i:116100501 original size:12 final size:12
Alignment explanation
Indices: 116100484--116100509 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
116100474 AAGATCGAGG
116100484 GATGAATCTGAT
1 GATGAATCTGAT
116100496 GATGAATCTGAT
1 GATGAATCTGAT
116100508 GA
1 GA
116100510 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:116103711 original size:13 final size:14
Alignment explanation
Indices: 116103695--116103723 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
116103685 TTATAAATAT
116103695 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
116103708 TTATAATGGTTTAA
1 TTATAATGGTTTAA
116103722 TT
1 TT
116103724 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:116104622 original size:42 final size:42
Alignment explanation
Indices: 116104555--116104732 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
116104545 GTGCCGCTAA
* * **
116104555 AAAAGTCATGGCTTTTAACGACGCTTTCCCAAAAAATGTTGCT
1 AAAAGTCATGGCTTTTAGCG-CGCTTTCCCAAAAAACGCCGCT
* *
116104598 -AAAGTCATGGCTTTTAGCAGCGCTTCCCCAACAAACGCCGCT
1 AAAAGTCATGGCTTTTAGC-GCGCTTTCCCAAAAAACGCCGCT
* * * * *
116104640 AAAAGCCATGACTTTTAGCGGCGCTTTTCTC-ACAAACACCGCT
1 AAAAGTCATGGCTTTTAGC-GCGC-TTTCCCAAAAAACGCCGCT
* * * *
116104683 AAAAG-CTATGACTTTTAGCGGCGCTTTTCTC-AAAAATGCTGCT
1 AAAAGTC-ATGGCTTTTAGC-GCGC-TTTCCCAAAAAACGCCGCT
116104726 AAAAGTC
1 AAAAGTC
116104733 TTGATCTTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
42 35 0.31
43 74 0.65
44 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
AAAAGTCATGGCTTTTAGCGCGCTTTCCCAAAAAACGCCGCT
Found at i:116104727 original size:43 final size:43
Alignment explanation
Indices: 116104608--116104773 Score: 160
Period size: 43 Copynumber: 3.8 Consensus size: 43
116104598 AAAGTCATGG
* * * *
116104608 CTTTTAGCAGCGC-TTCCCCAACAAACGCCGCTAAAAGCCATGA
1 CTTTTAGCGGCGCTTTTCTCAA-AAACGCCGCTAAAAGCTATGA
* *
116104651 CTTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAAGCTATGA
1 CTTTTAGCGGCGCTTTTCTCAAAAACGCCGCTAAAAGCTATGA
* *
116104694 CTTTTAGCGGCGCTTTTCTCAAAAATGCTGCTAAAAGTCT-TGA
1 CTTTTAGCGGCGCTTTTCTCAAAAACGCCGCTAAAAG-CTATGA
* * *
116104737 TCTTTT-GTGGCGTTTTTTTCAGATAAACGCCG-TAAAA
1 -CTTTTAGCGGCGCTTTTCTCA-A-AAACGCCGCTAAAA
116104774 TTTTGCGGCA
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
43 79 0.77
44 18 0.17
45 6 0.06
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (43 bp):
CTTTTAGCGGCGCTTTTCTCAAAAACGCCGCTAAAAGCTATGA
Found at i:116110326 original size:17 final size:18
Alignment explanation
Indices: 116110313--116110418 Score: 80
Period size: 17 Copynumber: 5.9 Consensus size: 18
116110303 TAATCTTCAA
116110313 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
116110332 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
116110349 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
116110368 TGAT-TGCAAGCTTAGA-
1 TGATATGCAATCTTAGAG
* *
116110384 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
116110403 TGAT-TGCAATCTTAGA
1 TGATATGCAATCTTAGA
116110419 TATGATATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 19
0.74 0.06 0.20
Matches are distributed among these distances:
15 2 0.03
16 3 0.04
17 23 0.32
18 21 0.29
19 19 0.26
20 4 0.06
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:116110383 original size:18 final size:18
Alignment explanation
Indices: 116110312--116110424 Score: 158
Period size: 18 Copynumber: 6.3 Consensus size: 18
116110302 ATAATCTTCA
116110312 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
116110331 GTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
116110350 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
116110367 ATGATTGCAAGCTTAGAT
1 ATGATTGCAATCTTAGAT
*
116110385 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
116110402 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
116110420 ATGAT
1 ATGAT
116110425 ATATAATCTT
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
17 31 0.37
18 32 0.38
19 21 0.25
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:116110383 original size:35 final size:35
Alignment explanation
Indices: 116110320--116110425 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
116110310 CAATGATATG
*
116110320 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
*
116110356 CAATCTTAGATATGATTGCAAGCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
116110391 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
116110426 TATAATCTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
35 52 0.78
36 15 0.22
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:116116221 original size:14 final size:14
Alignment explanation
Indices: 116116202--116116256 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
116116192 CTTCTATTTC
116116202 AAAAAAAA-AAGAAG
1 AAAAAAAAGAA-AAG
116116216 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
*
116116230 AAAAAGAGAGAAAA-
1 AAAAA-AAAGAAAAG
* *
116116244 ATAAAAAATAAAA
1 AAAAAAAAGAAAA
116116257 AATAAAAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
13 6 0.17
14 20 0.57
15 9 0.26
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.04
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:116116228 original size:23 final size:24
Alignment explanation
Indices: 116116203--116116258 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
116116193 TTCTATTTCA
116116203 AAAAAAAAAGA-AGAAAAA-AAAGA
1 AAAAAAAAAGAGAGAAAAATAAA-A
*
116116226 AAAGAAAAAGAGAGAAAAATAAAA
1 AAAAAAAAAGAGAGAAAAATAAAA
*
116116250 AATAAAAAA
1 AAAAAAAAA
116116259 TAAAAATGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.36
24 15 0.54
25 3 0.11
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (24 bp):
AAAAAAAAAGAGAGAAAAATAAAA
Found at i:116116256 original size:22 final size:20
Alignment explanation
Indices: 116116202--116116257 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 20
116116192 CTTCTATTTC
116116202 AAAAAAAAAAGAAGAAAAAAA
1 AAAAAAAAAAGAAG-AAAAAA
116116223 AGAAAAGAAAAAGAGAGAAAAATA
1 A-AAAA-AAAAAGA-AGAAAAA-A
116116247 AAAAATAAAAA
1 AAAAA-AAAAA
116116258 ATAAAAATGG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 4 0.13
23 21 0.70
24 4 0.13
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (20 bp):
AAAAAAAAAAGAAGAAAAAA
Found at i:116116265 original size:6 final size:7
Alignment explanation
Indices: 116116240--116116264 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
116116230 AAAAAGAGAG
116116240 AAAAATA
1 AAAAATA
116116247 AAAAATA
1 AAAAATA
116116254 AAAAATA
1 AAAAATA
116116261 AAAA
1 AAAA
116116265 TGGAGAGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Done.