Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 392 of 410
Found at i:118998927 original size:17 final size:18
Alignment explanation
Indices: 118998895--118998929 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
118998885 GTAACAACAT
118998895 TAATCAAATAATTTTTTA
1 TAATCAAATAATTTTTTA
*
118998913 TAATTAAAT-ATTTTTTA
1 TAATCAAATAATTTTTTA
118998930 ATTATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATCAAATAATTTTTTA
Found at i:119008769 original size:21 final size:22
Alignment explanation
Indices: 119008745--119008799 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
119008735 TAATTTAATT
119008745 TTTTATAAATTTTATTT-ATAA
1 TTTTATAAATTTTATTTAATAA
*
119008766 TTTTAT-GATTTT-TTTAAATAA
1 TTTTATAAATTTTATTT-AATAA
119008787 TTTT-TAAATTTTA
1 TTTTATAAATTTTA
119008800 AAGTGTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 3 0.11
20 6 0.21
21 19 0.68
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTATAAATTTTATTTAATAA
Found at i:119008789 original size:28 final size:28
Alignment explanation
Indices: 119008714--119008799 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 28
119008704 TCAACATTAT
*
119008714 TATTTTTTAATAAAAAATTTATAA-TTTA
1 TATTTTTT-ATAAATAATTTATAATTTTA
*
119008742 -ATTTTTTATAAATTTTATTTATAATTTTA
1 TATTTTTTATAAA--TAATTTATAATTTTA
*
119008771 TGATTTTTT-TAAATAATTTTTAAATTTTA
1 T-ATTTTTTATAAATAATTTAT-AATTTTA
119008800 AAGTGTTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
26 5 0.10
27 7 0.15
28 14 0.29
29 11 0.23
30 4 0.08
31 7 0.15
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (28 bp):
TATTTTTTATAAATAATTTATAATTTTA
Found at i:119012073 original size:23 final size:23
Alignment explanation
Indices: 119012046--119012094 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
119012036 TTGTAAAATC
119012046 TAAAAACTAGAAACTCTAACAAA
1 TAAAAACTAGAAACTCTAACAAA
119012069 TAAAAACTAGAAACTCTAACAAA
1 TAAAAACTAGAAACTCTAACAAA
119012092 TAA
1 TAA
119012095 TTTGAGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.61, C:0.16, G:0.04, T:0.18
Consensus pattern (23 bp):
TAAAAACTAGAAACTCTAACAAA
Found at i:119015104 original size:40 final size:40
Alignment explanation
Indices: 119015055--119015133 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
119015045 ATCTAATGTA
* *
119015055 TGTTCTTTTATTCATCGATAAGGTATTAATCCATTGTATG
1 TGTTCTTTTATTCATCGATAAGGTACTAATCCAATGTATG
*
119015095 TGTTCTTTTATTCATCGATAGGGTACTAATCCAATGTAT
1 TGTTCTTTTATTCATCGATAAGGTACTAATCCAATGTAT
119015134 CGATCGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (40 bp):
TGTTCTTTTATTCATCGATAAGGTACTAATCCAATGTATG
Found at i:119025050 original size:15 final size:15
Alignment explanation
Indices: 119025002--119025322 Score: 67
Period size: 15 Copynumber: 21.0 Consensus size: 15
119024992 TGACCTGCCT
119025002 TCATGTAAATGCAGC
1 TCATGTAAATGCAGC
* ** *
119025017 TCGTGCGATTGCA-C
1 TCATGTAAATGCAGC
119025031 TTCATGTAAATGCAGC
1 -TCATGTAAATGCAGC
* * *
119025047 TCATGCAACTGCA-A
1 TCATGTAAATGCAGC
*
119025061 TCCGTGTAAATGCAGC
1 T-CATGTAAATGCAGC
* ** * *
119025077 TCGTGCGACTGCA-A
1 TCATGTAAATGCAGC
*
119025091 TCCGTGTAAATGCAGC
1 T-CATGTAAATGCAGC
* * * *
119025107 TCGTGCAACTGCA-A
1 TCATGTAAATGCAGC
* *
119025121 TCCGTGTAAATGCGGC
1 T-CATGTAAATGCAGC
** * *
119025137 TCATGCGACTGCA-A
1 TCATGTAAATGCAGC
119025151 TCCATGTAAATGCAGC
1 T-CATGTAAATGCAGC
* * * * * *
119025167 CCGTGTGACTGTAGT
1 TCATGTAAATGCAGC
119025182 TCATGTAAATGCAGC
1 TCATGTAAATGCAGC
* * * *
119025197 AGTTTATGTGACTGCAGT
1 ---TCATGTAAATGCAGC
*
119025215 TCATGTAATTGCAGC
1 TCATGTAAATGCAGC
* * * *
119025230 TCATGCAACTGTAGT
1 TCATGTAAATGCAGC
119025245 TCATGTAAATGCAGC
1 TCATGTAAATGCAGC
* ** * *
119025260 AGTTTATGCGACTGCAGT
1 ---TCATGTAAATGCAGC
* *
119025278 TCTTGTAAATGCATC
1 TCATGTAAATGCAGC
* * *
119025293 TCATGCAACTGCAGT
1 TCATGTAAATGCAGC
119025308 TCATGTAAATGCAGC
1 TCATGTAAATGCAGC
119025323 AGTTTATGCG
Statistics
Matches: 202, Mismatches: 88, Indels: 32
0.63 0.27 0.10
Matches are distributed among these distances:
14 5 0.02
15 172 0.85
16 4 0.02
18 21 0.10
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (15 bp):
TCATGTAAATGCAGC
Found at i:119025216 original size:33 final size:33
Alignment explanation
Indices: 119025173--119025355 Score: 234
Period size: 33 Copynumber: 5.7 Consensus size: 33
119025163 CAGCCCGTGT
* *
119025173 GACTGTAGTTCATGTAAATGCAGCAGTTTATGT
1 GACTGCAGTTCATGTAAATGCAGCAGTTTATGC
* *
119025206 GACTGCAGTTCATGTAATTGCAGC---TCATGC
1 GACTGCAGTTCATGTAAATGCAGCAGTTTATGC
* *
119025236 AACTGTAGTTCATGTAAATGCAGCAGTTTATGC
1 GACTGCAGTTCATGTAAATGCAGCAGTTTATGC
* * *
119025269 GACTGCAGTTCTTGTAAATGCATC---TCATGC
1 GACTGCAGTTCATGTAAATGCAGCAGTTTATGC
*
119025299 AACTGCAGTTCATGTAAATGCAGCAGTTTATGC
1 GACTGCAGTTCATGTAAATGCAGCAGTTTATGC
119025332 GACTGCAGTTCATGTAAATGCAGC
1 GACTGCAGTTCATGTAAATGCAGC
119025356 TCGTGTGACT
Statistics
Matches: 126, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
30 51 0.40
33 75 0.60
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (33 bp):
GACTGCAGTTCATGTAAATGCAGCAGTTTATGC
Found at i:119025353 original size:15 final size:15
Alignment explanation
Indices: 119025179--119025354 Score: 84
Period size: 15 Copynumber: 11.1 Consensus size: 15
119025169 GTGTGACTGT
119025179 AGTTCATGTAAATGCAGC
1 AGTTCATGTAAAT---GC
* * *
119025197 AGTTTATGTGACTGC
1 AGTTCATGTAAATGC
*
119025212 AGTTCATGTAATTGC
1 AGTTCATGTAAATGC
* * * *
119025227 AGCTCATGCAACTGT
1 AGTTCATGTAAATGC
119025242 AGTTCATGTAAATGCAGC
1 AGTTCATGTAAAT---GC
* ** *
119025260 AGTTTATGCGACTGC
1 AGTTCATGTAAATGC
*
119025275 AGTTCTTGTAAATGC
1 AGTTCATGTAAATGC
* *
119025290 A-TCTCATGCAACTGC
1 AGT-TCATGTAAATGC
119025305 AGTTCATGTAAATGCAGC
1 AGTTCATGTAAAT---GC
* ** *
119025323 AGTTTATGCGACTGC
1 AGTTCATGTAAATGC
119025338 AGTTCATGTAAATGC
1 AGTTCATGTAAATGC
119025353 AG
1 AG
119025355 CTCGTGTGAC
Statistics
Matches: 114, Mismatches: 36, Indels: 19
0.67 0.21 0.11
Matches are distributed among these distances:
14 1 0.01
15 81 0.71
16 1 0.01
18 31 0.27
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (15 bp):
AGTTCATGTAAATGC
Found at i:119025368 original size:63 final size:62
Alignment explanation
Indices: 119024968--119025357 Score: 380
Period size: 63 Copynumber: 6.3 Consensus size: 62
119024958 CATCGGAACA
* * * * * * *
119024968 CAGTTCGTGCAAATGCAGCTCATGTGACCTGC-CTTCATGTAAATGCAGC--TCGTGCGATTG
1 CAGTTCATGTAAATGCAGCTCATG-CAACTGCAGTTCATGTAAATGCAGCGTTCATGCGACTG
* * * * *
119025028 CACTTCATGTAAATGCAGCTCATGCAACTGCAATCCGTGTAAATGCAGC--TCGTGCGACTG
1 CAGTTCATGTAAATGCAGCTCATGCAACTGCAGTTCATGTAAATGCAGCGTTCATGCGACTG
* * * * * * * *
119025088 CAATCCGTGTAAATGCAGCTCGTGCAACTGCAATCCGTGTAAATGC-G-GCTCATGCGACTG
1 CAGTTCATGTAAATGCAGCTCATGCAACTGCAGTTCATGTAAATGCAGCGTTCATGCGACTG
* * * * ** * * *
119025148 CAATCCATGTAAATGCAGCCCGTGTGACTGTAGTTCATGTAAATGCAGCAGTTTATGTGACTG
1 CAGTTCATGTAAATGCAGCTCATGCAACTGCAGTTCATGTAAATGCAGC-GTTCATGCGACTG
* * *
119025211 CAGTTCATGTAATTGCAGCTCATGCAACTGTAGTTCATGTAAATGCAGCAGTTTATGCGACTG
1 CAGTTCATGTAAATGCAGCTCATGCAACTGCAGTTCATGTAAATGCAGC-GTTCATGCGACTG
* * *
119025274 CAGTTCTTGTAAATGCATCTCATGCAACTGCAGTTCATGTAAATGCAGCAGTTTATGCGACTG
1 CAGTTCATGTAAATGCAGCTCATGCAACTGCAGTTCATGTAAATGCAGC-GTTCATGCGACTG
119025337 CAGTTCATGTAAATGCAGCTC
1 CAGTTCATGTAAATGCAGCTC
119025358 GTGTGACTGC
Statistics
Matches: 285, Mismatches: 39, Indels: 9
0.86 0.12 0.03
Matches are distributed among these distances:
59 6 0.02
60 135 0.47
61 1 0.00
63 143 0.50
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (62 bp):
CAGTTCATGTAAATGCAGCTCATGCAACTGCAGTTCATGTAAATGCAGCGTTCATGCGACTG
Found at i:119025376 original size:30 final size:30
Alignment explanation
Indices: 119024968--119025368 Score: 354
Period size: 30 Copynumber: 13.1 Consensus size: 30
119024958 CATCGGAACA
* * *
119024968 CAGTTCGTGCAAATGCAGCTCATGTGACCTG
1 CAGTTCATGTAAATGCAGCTCATGCGA-CTG
* * *
119024999 C-CTTCATGTAAATGCAGCTCGTGCGATTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* *
119025028 CACTTCATGTAAATGCAGCTCATGCAACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* * * *
119025058 CAATCCGTGTAAATGCAGCTCGTGCGACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* * * * *
119025088 CAATCCGTGTAAATGCAGCTCGTGCAACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* * * *
119025118 CAATCCGTGTAAATGCGGCTCATGCGACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* * * * *
119025148 CAATCCATGTAAATGCAGCCCGTGTGACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* * *
119025178 TAGTTCATGTAAATGCAGCAGTTTATGTGACTG
1 CAGTTCATGTAAATGCAGC---TCATGCGACTG
* *
119025211 CAGTTCATGTAATTGCAGCTCATGCAACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
* *
119025241 TAGTTCATGTAAATGCAGCAGTTTATGCGACTG
1 CAGTTCATGTAAATGCAGC---TCATGCGACTG
* * *
119025274 CAGTTCTTGTAAATGCATCTCATGCAACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
*
119025304 CAGTTCATGTAAATGCAGCAGTTTATGCGACTG
1 CAGTTCATGTAAATGCAGC---TCATGCGACTG
* *
119025337 CAGTTCATGTAAATGCAGCTCGTGTGACTG
1 CAGTTCATGTAAATGCAGCTCATGCGACTG
119025367 CA
1 CA
119025369 AATCATGTTT
Statistics
Matches: 310, Mismatches: 50, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
29 3 0.01
30 228 0.74
31 1 0.00
33 78 0.25
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (30 bp):
CAGTTCATGTAAATGCAGCTCATGCGACTG
Found at i:119031875 original size:17 final size:15
Alignment explanation
Indices: 119031844--119031877 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
119031834 AAATTTTTTT
119031844 AATTTTAAATATTAA
1 AATTTTAAATATTAA
119031859 AATTATTAAATTATTAA
1 AATT-TTAAA-TATTAA
119031876 AA
1 AA
119031878 ACTATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 5 0.29
17 8 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTTTAAATATTAA
Found at i:119038564 original size:34 final size:34
Alignment explanation
Indices: 119038486--119038571 Score: 86
Period size: 34 Copynumber: 2.5 Consensus size: 34
119038476 GAAATTTCTA
** *
119038486 AATTATTAAAATAATAATTTATGTTTGAAAAATT
1 AATTATTATTATAATATTTTATGTTTGAAAAATT
* *
119038520 ATATTA-TATTATAATATTTTA-GTTATTAAATATT
1 A-ATTATTATTATAATATTTTATGTT-TGAAAAATT
119038554 AATTATTATTAATAATAT
1 AATTATTATT-ATAATAT
119038572 AACGATAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
33 7 0.16
34 25 0.58
35 11 0.26
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (34 bp):
AATTATTATTATAATATTTTATGTTTGAAAAATT
Found at i:119044331 original size:31 final size:31
Alignment explanation
Indices: 119044290--119044358 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
119044280 TTACAAAATG
* *
119044290 GTCATTGAACTATTCGAAAGT-TTTCATTTAA
1 GTCACTGAACTATTCAAAAGTCTTT-ATTTAA
*
119044321 GTTACTGAACTATTCAAAAGTCTTTATTTAA
1 GTCACTGAACTATTCAAAAGTCTTTATTTAA
119044352 GTCACTG
1 GTCACTG
119044359 GATTGTTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 30 0.91
32 3 0.09
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTCTTTATTTAA
Found at i:119047735 original size:23 final size:23
Alignment explanation
Indices: 119047709--119047759 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
119047699 TTGAAATAAA
119047709 AAAATTATAAA-AAATAAAATATT
1 AAAATT-TAAATAAATAAAATATT
* *
119047732 AAAATTTAAATACATGAAATATT
1 AAAATTTAAATAAATAAAATATT
*
119047755 TAAAT
1 AAAAT
119047760 CTCGTGTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAATTTAAATAAATAAAATATT
Found at i:119051194 original size:6 final size:6
Alignment explanation
Indices: 119051180--119051212 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
119051170 TTTCTTTGTC
*
119051180 TCTGGT TCTGCT TCTGCT TCTGCT TCTGCT TCT
1 TCTGCT TCTGCT TCTGCT TCTGCT TCTGCT TCT
119051213 TCAATACCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.30, G:0.18, T:0.52
Consensus pattern (6 bp):
TCTGCT
Found at i:119051993 original size:21 final size:21
Alignment explanation
Indices: 119051969--119052018 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
119051959 AAATTTAGTA
* * *
119051969 TTTAGGGTTTCGAGTTTAAGG
1 TTTAGGATTTAGAGTTTAAAG
*
119051990 TTTAAGATTTAGAGTTTAAAG
1 TTTAGGATTTAGAGTTTAAAG
119052011 TTTAGGAT
1 TTTAGGAT
119052019 AAAAAAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.26, T:0.44
Consensus pattern (21 bp):
TTTAGGATTTAGAGTTTAAAG
Found at i:119070771 original size:12 final size:12
Alignment explanation
Indices: 119070756--119070789 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
119070746 AATGCAAATG
*
119070756 ATAATGATAACA
1 ATAATAATAACA
119070768 ATAATAATAACA
1 ATAATAATAACA
119070780 ATAATAATAA
1 ATAATAATAA
119070790 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (12 bp):
ATAATAATAACA
Found at i:119076937 original size:413 final size:417
Alignment explanation
Indices: 119076113--119077075 Score: 1151
Period size: 413 Copynumber: 2.3 Consensus size: 417
119076103 ATATTCGACG
* * * * *
119076113 TAATATTTAAAAGACAAACAAAATGATTTAACCTTTTAAGGGTTACATCTACAAATAAGTGCACC
1 TAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAAGGGTTACATATACAAACAAGTGAACC
*
119076178 CTCTCTACAATAGTTATTGTGAAAAAAATATTATATATATATATATATATTGGGGTAAAGTTAGA
66 CTCTCTACAATGGTTATTGTG----AAA-A--A-ATATAT-TATATATATTGGGGTAAAGTTAGA
* *
119076243 AATAAAGACTTTAAAAGGATTAAATCAACATTTTATCATTTTTAAGGGTCAAAATACAATTTTAC
122 AATAAAGACATTAAAAGGATTAAATCAACATTTTATCATTTTTAAGGGCCAAAATACAATTTTAC
* *
119076308 CTTTACTAATTTAAAATTTAAAAAAAATTAAAGGGGCTAAACAAAAAAATTTCCATTTTAGGGGA
187 CTTTACTAATTTAAAATTTAAAAAAAATTAAAGGGCCTAAACAAAAAAATTTCCATTTTAGGAGA
* * * * *
119076373 GCCGTGGCCCTTGCCAGCTCCTAGTTACTATAATGAAAAAACTCACTTATCTTTACATTCGGACC
252 GCCGTGGCCCTTACCAGCCCCTAGCTACTATAATGAAAAAACTCAATTATCTTTACATTCGAACC
* * *
119076438 TAATTTTTTTCTTAAAAAAATATATAATCCAAGTGAAATCGGAATCAATAAAATTAAGATTATCT
317 TAATTTTTTTCTAAAAAAAATATATAATCCAAGTGAAACCGAAATCAATAAAATTAAGATTATCT
*
119076503 GTCATGAATCATTTGGTAAAATTTAAGTCTACATTT
382 GTCATGAATCATTTAGTAAAATTTAAGTCTACATTT
* * *
119076539 TAATATTTAAAAGACAAATAAAGTGATGTAACCTTTTAAGGGTTACATAAACAAACAAGTGAATC
1 TAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAAGGGTTACATATACAAACAAGTGAACC
* *
119076604 CTCTCTGCAATGGTTATTGTGAAAAAATATATTATCTATATTGGGGTAAAGTTAGAAA-AAA-A-
66 CTCTCTACAATGGTTATTGTGAAAAAATATATTATATATATTGGGGTAAAGTTAGAAATAAAGAC
* * * * * *
119076666 ATT-AAAGGATTAATTTGAA-TTTTTATCATTTTTAGGGGAACCAAATTATAATTTTACCTTTAC
131 ATTAAAAGGATTAA-ATCAACATTTTATCATTTTTAAGGG--CCAAAATACAATTTTACCTTTAC
** *** * * * * *
119076729 TAATTTAATTTTTTTTAAAAATTAAAGGGCCTAAATAGAAAATTTTCTATTTTAGGAGAGTCG-G
193 TAATTTAAAATTTAAAAAAAATTAAAGGGCCTAAACAAAAAAATTTCCATTTTAGGAGAGCCGTG
* * * * * * * *
119076793 GCCC-TACTAGCCCCTGGCTATTATAAT-AAAAAATTTAATTATCTTTATATTCGAACTTGATTT
258 GCCCTTACCAGCCCCTAGCTACTATAATGAAAAAACTCAATTATCTTTACATTCGAACCTAATTT
**
119076856 TTTTCTAAAGAAAAA-ATTATAATTCC-AGTGAAACCGAAATCAAT-AAATTTGGATTTATCTGT
323 TTTTCTAAA-AAAAATA-TATAA-TCCAAGTGAAACCGAAATCAATAAAATTAAGA-TTATCTGT
*
119076918 CA-GAAATCATTTAGTAAAATTTAAGTCTAGATTT
384 CATG-AATCATTTAGTAAAATTTAAGTCTACATTT
* * * *
119076952 TAATATTTAAAAGAAAAACAAAGTGATGTAACTTTTTAGGGGTTACATATACAAACGAGT-ATAC
1 TAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAAGGGTTACATATACAAACAAGTGA-AC
* * *
119077016 CCTCTCTATAATGGTTATTGTGAAAATATATATTATATATATTTGGGTAAAGTTAGAAAT
65 CCTCTCTACAATGGTTATTGTGAAAAAATATATTATATATATTGGGGTAAAGTTAGAAAT
119077076 TTTTTTTGAG
Statistics
Matches: 464, Mismatches: 63, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
412 47 0.10
413 217 0.47
414 13 0.03
415 72 0.16
416 3 0.01
417 25 0.05
418 6 0.01
419 1 0.00
421 1 0.00
422 3 0.01
426 76 0.16
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (417 bp):
TAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAAGGGTTACATATACAAACAAGTGAACC
CTCTCTACAATGGTTATTGTGAAAAAATATATTATATATATTGGGGTAAAGTTAGAAATAAAGAC
ATTAAAAGGATTAAATCAACATTTTATCATTTTTAAGGGCCAAAATACAATTTTACCTTTACTAA
TTTAAAATTTAAAAAAAATTAAAGGGCCTAAACAAAAAAATTTCCATTTTAGGAGAGCCGTGGCC
CTTACCAGCCCCTAGCTACTATAATGAAAAAACTCAATTATCTTTACATTCGAACCTAATTTTTT
TCTAAAAAAAATATATAATCCAAGTGAAACCGAAATCAATAAAATTAAGATTATCTGTCATGAAT
CATTTAGTAAAATTTAAGTCTACATTT
Found at i:119077826 original size:24 final size:24
Alignment explanation
Indices: 119077794--119077844 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
119077784 AAGGTGGTTG
*
119077794 TTCATCATTATTTTATTCTGTTTT
1 TTCATCATTATTTTATTCTATTTT
119077818 TTCATCATTATTTTATTCTATTTT
1 TTCATCATTATTTTATTCTATTTT
119077842 TTC
1 TTC
119077845 TTTTTTTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.14, G:0.02, T:0.67
Consensus pattern (24 bp):
TTCATCATTATTTTATTCTATTTT
Found at i:119078527 original size:22 final size:22
Alignment explanation
Indices: 119078502--119078543 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
119078492 TTAATTGAGT
119078502 TTTTCTATTATTTCAATATGTG
1 TTTTCTATTATTTCAATATGTG
* *
119078524 TTTTTTTTTATTTCAATATG
1 TTTTCTATTATTTCAATATG
119078544 GTCAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (22 bp):
TTTTCTATTATTTCAATATGTG
Found at i:119081717 original size:415 final size:414
Alignment explanation
Indices: 119080782--119083463 Score: 3198
Period size: 417 Copynumber: 6.5 Consensus size: 414
119080772 TGTTGAAACT
* * *
119080782 TATAATACAAAATCCACTTATCTTTACATTCGAACCTAATTTTTTTTCTAAAGAAAAAAAACTAT
1 TATAATAAAAAATTCACTTATCTTTACATTCGAACCTGA-TTTTTTTCTAAAGAAAAAAAACTAT
* *
119080847 AATCCAAGTGAAACCGAAATCAATCAATTTGGGATTATCTGTCAGGAATCATTTGGTAAAATTTA
65 AATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATTTA
*
119080912 AGT-TCAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTATGGGTTACATATACA
130 AGTCT-AGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATACA
* *
119080976 AACGAGTGGACCCTCTCTATAATGGTTATTGTGAAAAAAATATATGATATATATATTGGGGTAAA
194 AACGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATAT--TATATATATTGGGGTAAA
* *
119081041 GTTAGAAAAGAATTTTAAAGGATTAAATCGAATTTTTATCATTTTTAAGGGGTCAAAGTATAATT
257 GTTAGAAAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTT-AGGGGCCAAAGTATAATT
* * *
119081106 TTACCTTTACTAATTTAAAA-TTTAAAAAAATTAAAAGACCTAAATAG-AAATTTTTTCATTTTA
321 TTACTTTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCCTAAATAGAAAATTTTTT-ATTTTA
* * **
119081169 AGGGAGTCAGGGCCCCTGCCAGCCCCTAACTAC
385 GGGGAG-CCGGG-CCCTGCCAG-CCCTGGCTAC
*
119081202 TATAACAAAAAATTCACTTATCTTTACATTCGAACCTGATTTTTTTCTAAAG-AAAAAAACTATA
1 TATAATAAAAAATTCACTTATCTTTACATTCGAACCTGATTTTTTTCTAAAGAAAAAAAACTATA
* ** * * *
119081266 ATCCAAATGAAACATAAATCAATTAATTTGGGATTATCTGTCAAGAATCATTTGGTAAAATTTAA
66 ATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATTTAA
* * *
119081331 GTTTAGATTTCAATATTTAAAAGACAAACAAAGTGAAGTAACCTTTTAGGGGTTATATATACAAA
131 GTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATACAAA
* * * * *
119081396 CAAGTAGACTCTCTCTGTGATGGTTATTGTGAAAAATATATATTATATACATTGGGGTAAAGTTA
196 CGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATATTATATATATTGGGGTAAAGTTA
** * * *
119081461 GAAAAGAATTTTAATTGATTTAATTAAATTTTTATCATTTTT-GGGGCCAATGTATAATTTTACT
261 GAAAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTTAGGGGCCAAAGTATAATTTTACT
* *
119081525 TTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCTTAAATAGAAAATTTTTTATTTTAGGAGAG
326 TTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCCTAAATAGAAAATTTTTTATTTTAGGGGAG
119081590 CCGGGACCCATGCCAGCCCTAGGCTAC
391 CCGGG-CCC-TGCCAGCCCT-GGCTAC
** *
119081617 TATAATAAAAAATTCACTTATCTTTACATTCGAGTCTGATTTTTTTATAAAG-AAAAAAACTATA
1 TATAATAAAAAATTCACTTATCTTTACATTCGAACCTGATTTTTTTCTAAAGAAAAAAAACTATA
* * * *
119081681 ATTCAAGTGAAACCGAAATCAATAAATTTTGGATTATCTGTCATGAATCATTTGGTAAAACTTAA
66 ATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATTTAA
* * *
119081746 GTCTAGATTTTAATATTTAAAAGACAAATAAAGTGATGTAACTTTTTAGGGGTTACATATACAAA
131 GTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATACAAA
* * *
119081811 CAAGTGGACCCTCTCTGTAATGATTATTGTGAAAAGTATATATTATATATATTGGGGTAAAGTTA
196 CGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATATTATATATATTGGGGTAAAGTTA
*
119081876 GAAAAGAATTTTAAAGGATTAAATTAAATTTTTATCATTTTTAGGGGGCCAAAGTATAATTTTAC
261 GAAAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTTA-GGGGCCAAAGTATAATTTTAC
* *
119081941 TTTTAC-----T--AA-TTTAAAAAAATTAAATGGCCTAAATAGAAAATTTTTAATTTTA--GGA
325 TTTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCCTAAATAGAAAATTTTTTATTTTAGGGGA
*
119081996 ---GAG-CC-G---G----GGC-A-
390 GCCGGGCCCTGCCAGCCCTGGCTAC
* * * * * *
119082007 -AT-A-ACAAAATTTACTTATTTTTACATTCGAACTTGATTTTTTTCTAAAGAAAAATAAATTAA
1 TATAATAAAAAATTCACTTATCTTTACATTCGAACCTGATTTTTTTCTAAAGAAAAA-AAACTAT
*
119082069 AATCCAAGTGAAACCGGAATCAATAAATTT-GAGATTATCTGTCAGGAATCATTTGGTAAAATTT
65 AATCCAAGTGAAACCGAAATCAATAAATTTAG-GATTATCTGTCAGGAATCATTTGGTAAAATTT
* * *
119082133 AAGTCTAAATTTTAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATCCA
129 AAGTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATACA
* * ** * * *
119082198 AACAAGTGCACCCTCTCTACAATGGTTATTGGGAAAAA-A-AAATTATATATATATCGAGGTAAA
194 AACGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATATTATATATAT-T-GGGGTAAA
* * *
119082261 GTTAGAAAAGAATTTTAAAGGATTAAATTAAATTTTTATCATTTTTAGGGGGTCAAAGTGTAATT
257 GTTAGAAAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTTA-GGGGCCAAAGTATAATT
* * **
119082326 TTA-TCTTTACAAATTTAAAATTTT-AAAAAATTAAAGGGCCTAAATA-AAAAATTTCCATTTTA
321 TTACT-TTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCCTAAATAGAAAATTTTTTATTTTA
* *
119082388 GGGGAGCCGGGGCCCTGCCAACCTTTGGCTAC
385 GGGGAGCC-GGGCCCTGCCAGCC-CTGGCTAC
* * * *
119082420 TATAATAAAAAAACTCACTTATCTTTACATTCGAACCTAGTTTTTTTTCTAATA-TAAAAAAATT
1 TATAAT-AAAAAATTCACTTATCTTTACATTCGAACCT-GATTTTTTTCTAA-AGAAAAAAAACT
* * * * *
119082484 ATAATCCAGGTGAAATCGAAATCAATAAAATTAAGATTATCTGTCACGAATCATTTGGTAAAATT
63 ATAATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATT
* * * * * *
119082549 TAAGTTTAGATTTCAATATTTAAAATACAAATAAAGTGATGTAATCTTTTAGGGATTATATATAC
128 TAAGTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATAC
* *
119082614 AAACGAG-GGACCCTCTTTGTAATGGTTATTGTGAAAAA-ATATATTATCTATATTGGGGTAAAG
193 AAACGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATATTATATATATTGGGGTAAAG
** * * * *
119082677 TTAGAGAAA-AAAATTAAAGGATTAAATCGAATTTTTATAATTTTTAAGGGGATCAAAGTGTAAT
258 TTAGA-AAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTT-AGGGG-CCAAAGTATAAT
* * *
119082741 TTTACCTTTACTAATTTAAATTTTTTAAAAAATTAAAGGGCCT-AA-A-AAAATTTTTTCATTTT
320 TTTACTTTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCCTAAATAGAAAATTTTTT-ATTTT
* *
119082803 AGGGGAGCCGGGGCCCTTCCAACCCTTGGCTAC
384 AGGGGAGCC-GGGCCCTGCCAGCCC-TGGCTAC
* * * *
119082836 TATAATAAAAAAAATTCACTTATTTTTACATTCAAACTTGATTTTTTTTCTAAAGAAAAAAAATT
1 TATAAT--AAAAAATTCACTTATCTTTACATTCGAACCTGA-TTTTTTTCTAAAGAAAAAAAACT
* * *
119082901 ATAATTCAAGTGAAACCGAAATCAATAAAATTAGGATTATTTGTCAGGAATCATTTGGTAAAATT
63 ATAATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATT
* * *
119082966 TAAGTCTAGATTTCGATATTTAAAAGACAAACAAAGTTATGTAACCTTTTAGAGGTTACATATAC
128 TAAGTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATAC
* * * * *
119083031 AAACGAGTGGATCATCTCTGCAATGGTTATTGTG-AATATATATATTATATACATATTGGCGTAA
193 AAACGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATATTATAT--ATATTGGGGTAA
* * * * * **
119083095 AGTTA-AAAAAAAATTTAAATGATTAAATCAAATTTTTATCATTTTTAAGTGGCTAAAGTGCAAT
256 AGTTAGAAAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTT-AGGGGCCAAAGTATAAT
* * * * * **
119083159 TTAACATTTACTAATTTAAAATTTTTTAAACAA-TAAAGGACCTAAATAGAATTTTTTTTTATTT
320 TTTACTTTTACTAATTTAAAA-TTTTAAAAAAATTAAAGGGCCTAAATAGAA-AATTTTTTATTT
*
119083223 TAGGGGAGCCGAGGCCCT--------T-GCTAT
383 TAGGGGAGCCG-GGCCCTGCCAGCCCTGGCTAC
* *
119083247 TATAATAAAAAATTCACTTATCTTTATATTCGAACCTGGTTTTTTTCTAAAGAAAAAAAAAAACT
1 TATAATAAAAAATTCACTTATCTTTACATTCGAACCTGATTTTTTTCTAAAG---AAAAAAAACT
* * * *
119083312 ATTATCCAAGTGAAACCGAAATTAATAAATTCAGTATTATCTGTCAGGAATCATTTGGTAAAATT
63 ATAATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATT
* * *
119083377 TAAGTCTAGATTTTAATATTTAAAAGACAAACAAAGTGA--TAACTTTTTAGTGGTTACATATAC
128 TAAGTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATAC
** *
119083440 AAACGAGTAAACCCTCTCTATAAT
193 AAACGAGTGGACCCTCTCTGTAAT
119083464 AAAACATATT
Statistics
Matches: 1976, Mismatches: 215, Indels: 153
0.84 0.09 0.07
Matches are distributed among these distances:
387 51 0.03
388 9 0.00
389 236 0.12
391 1 0.00
392 3 0.00
394 1 0.00
395 13 0.01
396 23 0.01
397 7 0.00
400 1 0.00
401 2 0.00
402 4 0.00
403 1 0.00
404 2 0.00
407 2 0.00
408 13 0.01
409 108 0.05
410 2 0.00
411 116 0.06
412 3 0.00
414 47 0.02
415 375 0.19
416 177 0.09
417 377 0.19
418 256 0.13
419 65 0.03
420 53 0.03
421 22 0.01
422 6 0.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (414 bp):
TATAATAAAAAATTCACTTATCTTTACATTCGAACCTGATTTTTTTCTAAAGAAAAAAAACTATA
ATCCAAGTGAAACCGAAATCAATAAATTTAGGATTATCTGTCAGGAATCATTTGGTAAAATTTAA
GTCTAGATTTCAATATTTAAAAGACAAACAAAGTGATGTAACCTTTTAGGGGTTACATATACAAA
CGAGTGGACCCTCTCTGTAATGGTTATTGTGAAAAATATATATTATATATATTGGGGTAAAGTTA
GAAAAGAATTTTAAAGGATTAAATCAAATTTTTATCATTTTTAGGGGCCAAAGTATAATTTTACT
TTTACTAATTTAAAATTTTAAAAAAATTAAAGGGCCTAAATAGAAAATTTTTTATTTTAGGGGAG
CCGGGCCCTGCCAGCCCTGGCTAC
Found at i:119085978 original size:5 final size:5
Alignment explanation
Indices: 119085968--119085992 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
119085958 CTGATGGCTC
119085968 TTTGT TTTGT TTTGT TTTGT TTTGT
1 TTTGT TTTGT TTTGT TTTGT TTTGT
119085993 GTCAGGTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (5 bp):
TTTGT
Found at i:119089391 original size:15 final size:15
Alignment explanation
Indices: 119089371--119089400 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119089361 TATTATTTTA
119089371 ATATTTTAATAATTT
1 ATATTTTAATAATTT
*
119089386 ATATTTTTATAATTT
1 ATATTTTAATAATTT
119089401 TTAAATGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTTTAATAATTT
Found at i:119091416 original size:3 final size:3
Alignment explanation
Indices: 119091408--119091446 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
119091398 AACCCAAAAG
* *
119091408 GGA GGA GGA GGA GGA AGC GGA GGA GGA GGA GGA GGA GGA
1 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA
119091447 TTTTTAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.33, C:0.03, G:0.64, T:0.00
Consensus pattern (3 bp):
GGA
Found at i:119096005 original size:34 final size:34
Alignment explanation
Indices: 119095962--119096029 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
119095952 TCTTCTTTTG
119095962 GCTAAAGTCAAAAAAGTGTTGCATGGGATGAACT
1 GCTAAAGTCAAAAAAGTGTTGCATGGGATGAACT
119095996 GCTAAAGTCAAAAAAGTGTTGCATGGGATGAACT
1 GCTAAAGTCAAAAAAGTGTTGCATGGGATGAACT
119096030 ATTGTGTACG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (34 bp):
GCTAAAGTCAAAAAAGTGTTGCATGGGATGAACT
Found at i:119098256 original size:2 final size:2
Alignment explanation
Indices: 119098249--119098274 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
119098239 CAGAATGGAA
119098249 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
119098275 TTATTTAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119101422 original size:11 final size:10
Alignment explanation
Indices: 119101401--119101430 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
119101391 GAGTTTAATT
119101401 TATATTATTA
1 TATATTATTA
119101411 TATATCTATTA
1 TATAT-TATTA
119101422 TATATTATT
1 TATATTATT
119101431 TTAAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATTATTA
Found at i:119101427 original size:21 final size:20
Alignment explanation
Indices: 119101398--119101447 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
119101388 TTTGAGTTTA
* *
119101398 ATTTATATTATTATATATCT
1 ATTTATATTATTATAAATAT
*
119101418 ATTATATATTATTTTAAATAT
1 ATT-TATATTATTATAAATAT
119101439 ATTTATATT
1 ATTTATATT
119101448 TCAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTATATTATTATAAATAT
Found at i:119101458 original size:16 final size:17
Alignment explanation
Indices: 119101427--119101459 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
119101417 TATTATATAT
*
119101427 TATTTTAAATATATTTA
1 TATTTCAAATATATTTA
119101444 TATTTCAAATA-ATTTA
1 TATTTCAAATATATTTA
119101460 AAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTTCAAATATATTTA
Found at i:119104981 original size:35 final size:36
Alignment explanation
Indices: 119104942--119105010 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
119104932 AATATTTTGG
*
119104942 AATTTACTT-TTTAATCCTTTTTTCT-ATTTAAAAGA
1 AATTT-CTTATTTAATCCTTTTTTCTCATCTAAAAGA
* *
119104977 AATTTCTTATTTACTTCTTTTTTCTCATCTAAAA
1 AATTTCTTATTTAATCCTTTTTTCTCATCTAAAA
119105011 ATTCTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 3 0.10
35 19 0.66
36 7 0.24
ACGTcount: A:0.29, C:0.14, G:0.01, T:0.55
Consensus pattern (36 bp):
AATTTCTTATTTAATCCTTTTTTCTCATCTAAAAGA
Found at i:119105021 original size:32 final size:32
Alignment explanation
Indices: 119104980--119105040 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
119104970 TAAAAGAAAT
119104980 TTCTTATTTACTTCTT-TTTTCTCATCTAAAAA
1 TTCTTATTTACTT-TTCTTTTCTCATCTAAAAA
119105012 TTCTTATTTACTTTTCTTTTCTCATCTAA
1 TTCTTATTTACTTTTCTTTTCTCATCTAA
119105041 CATTGAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 2 0.07
32 26 0.93
ACGTcount: A:0.21, C:0.20, G:0.00, T:0.59
Consensus pattern (32 bp):
TTCTTATTTACTTTTCTTTTCTCATCTAAAAA
Found at i:119117241 original size:30 final size:30
Alignment explanation
Indices: 119117207--119117266 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
119117197 CCTTAATACG
119117207 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
119117237 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
119117267 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:119125378 original size:26 final size:24
Alignment explanation
Indices: 119125339--119125398 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
119125329 TTATTTCATT
* * * *
119125339 AAATAAAAAAATTTTAAAATATAA
1 AAATAAATATATTTAAAAACATAA
119125363 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
119125389 AAATAAATAT
1 AAATAAATAT
119125399 TAAAACAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 6 0.20
25 8 0.27
26 16 0.53
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:119125410 original size:22 final size:22
Alignment explanation
Indices: 119125369--119125427 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
119125359 ATAATAAATC
* *
119125369 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
119125389 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
119125411 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
119125428 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:119125521 original size:21 final size:21
Alignment explanation
Indices: 119125453--119125526 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 21
119125443 ACAAATTAAC
119125453 AATATAATAAAAAATAGTTATATT
1 AATA-AATAAAAAATA--TATATT
** **
119125477 AA-AAATTTAAAATA-ATTAAA
1 AATAAATAAAAAATATA-TATT
119125497 AATAAATAAAAAATATATATT
1 AATAAATAAAAAATATATATT
*
119125518 AATATATAA
1 AATAAATAA
119125527 TTCGGGCCGG
Statistics
Matches: 38, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
19 1 0.03
20 4 0.11
21 20 0.53
22 10 0.26
23 1 0.03
24 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (21 bp):
AATAAATAAAAAATATATATT
Found at i:119126141 original size:20 final size:20
Alignment explanation
Indices: 119126118--119126155 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
119126108 ACAAAATAAT
*
119126118 CAAAATAATTTTTAAAATTA
1 CAAAATAATCTTTAAAATTA
119126138 CAAAATAATCTTTAAAAT
1 CAAAATAATCTTTAAAAT
119126156 AATCACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (20 bp):
CAAAATAATCTTTAAAATTA
Found at i:119134570 original size:46 final size:46
Alignment explanation
Indices: 119134503--119134677 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
119134493 TGTAACCCGC
*
119134503 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
119134549 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* ** *
119134599 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
119134642 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
119134678 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:119134622 original size:93 final size:93
Alignment explanation
Indices: 119134510--119134681 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
119134500 CGCCCATAAG
** *
119134510 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
119134575 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
119134603 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
119134668 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
119134682 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:119136281 original size:177 final size:177
Alignment explanation
Indices: 119135969--119136638 Score: 950
Period size: 177 Copynumber: 3.8 Consensus size: 177
119135959 GGATATTACA
* * *
119135969 ATAAGATCTGTAATTTCCAGTCTGCTTCTTACAACTTTAGGAAGATAAGACTTGTATCTTCAACT
1 ATAAGATCTGTAATTTCCAGTCTGCTTCCTACAACTTCAGGAAGATAAGACTTGTATCTTCAACC
* * * * * *
119136034 TGCTCTCTTGCTACCTCAAAGAGATAAGACTGGTGGCTAAAATCTACTCCATAGCCAATACATGG
66 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAACCGATACATAG
* *
119136099 AGATAAGATTCGCTATTT-TCGATCTGCTCCATAGCCGATACATGAAG
131 AGATAAGATTCGCCATTTCT-GATCTGCTCCATAGCCGATACATGGAG
* ** * * *
119136146 ATAAGAT-TCGTAATTTACAACCTACTTCCTACAACTTTAGGAAGATAAGACTTATATCTTCAAC
1 ATAAGATCT-GTAATTTCCAGTCTGCTTCCTACAACTTCAGGAAGATAAGACTTGTATCTTCAAC
* * *
119136210 CTGCTCTCTTGTTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCTGCCCCATAACCGATACATA
65 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAACCGATACATA
*
119136275 GAGATAAGACTT-GCCATTTCTGATCTGTTCCATAGCCGATACATGGAG
130 GAGATAAGA-TTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAG
* * * *
119136323 ATAAGATCTATAATTTCCAGTCTGCTTCTTGCAACTTCAGGAAGATAAGACTTGTATCTTCAATC
1 ATAAGATCTGTAATTTCCAGTCTGCTTCCTACAACTTCAGGAAGATAAGACTTGTATCTTCAACC
* * * *
119136388 TGCTCTCTTGCTATCTTAGAGAGATAAGGCTGGTGACTAAAATCTGCTCCATAAACGATACATAG
66 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAACCGATACATAG
* *
119136453 AGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGGTACATGGAG
131 AGATAAGATTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAG
*
119136500 ATAAGATCTGTAATTTCCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAACC
1 ATAAGATCTGTAATTTCCAGTCTGCTTCCTACAACTTCAGGAAGATAAGACTTGTATCTTCAACC
* * * ** *
119136565 TGCTCTCTTGCTATCTTAGAGAGATAAGGCTGGTGGCTAAGATCTGCTCCATAGTCGATACATGG
66 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAACCGATACATAG
119136630 AGATAAGAT
131 AGATAAGAT
119136639 CTATAATTTT
Statistics
Matches: 440, Mismatches: 48, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
176 2 0.00
177 434 0.99
178 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (177 bp):
ATAAGATCTGTAATTTCCAGTCTGCTTCCTACAACTTCAGGAAGATAAGACTTGTATCTTCAACC
TGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAACCGATACATAG
AGATAAGATTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAG
Found at i:119145802 original size:40 final size:40
Alignment explanation
Indices: 119145750--119145894 Score: 175
Period size: 41 Copynumber: 3.6 Consensus size: 40
119145740 ATACTTGTTT
* * * * *
119145750 TTTTTGTTAAAACGCCACTAAAAATAGAGAAATAGCGGCG
1 TTTTTGGTAAAACGCCGCTAAAAACAGAGCATTAGCGGCG
*
119145790 TTTTTGGTAAAACGCCGCTAAAAAACAAAGCATTAGCGGCG
1 TTTTTGGTAAAACGCCGCT-AAAAACAGAGCATTAGCGGCG
* * *
119145831 CTTTTGGTAAAACGCCGCTAAAAGCCGGAGCATTAGCGGCG
1 TTTTTGGTAAAACGCCGCTAAAA-ACAGAGCATTAGCGGCG
119145872 CTTTTT-GTAAAACGCCGCTAAAA
1 -TTTTTGGTAAAACGCCGCTAAAA
119145895 GTTATATAAC
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
40 21 0.23
41 66 0.73
42 4 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (40 bp):
TTTTTGGTAAAACGCCGCTAAAAACAGAGCATTAGCGGCG
Found at i:119146261 original size:21 final size:20
Alignment explanation
Indices: 119146224--119146266 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
119146214 ATTATAGTTT
119146224 AGGGTTTACGTTATATGGTTA
1 AGGGTTTACGTT-TATGGTTA
*
119146245 AGGGTTTAATGTTTATGAGTTA
1 AGGGTTT-ACGTTTATG-GTTA
119146267 CTATTTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.44
Consensus pattern (20 bp):
AGGGTTTACGTTTATGGTTA
Found at i:119146326 original size:32 final size:32
Alignment explanation
Indices: 119146271--119146364 Score: 80
Period size: 32 Copynumber: 2.8 Consensus size: 32
119146261 GAGTTACTAT
* *
119146271 TTTAAGGTTTAGGGATTATGGTTTAAGTGTGG
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
* * *
119146303 TTTAAGGGTTGGGGTTTAAGGTTTAGGTGTAAGGG
1 TTTAAGGGTTAGGGATTAAGGTTTAAGTGT---GG
* * * *
119146338 GTTAGGGGTTAGGGGTTAAGGGTTAAG
1 TTTAAGGGTTAGGGATTAAGGTTTAAG
119146365 GGTTAAGGGT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
32 25 0.52
35 23 0.48
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.37
Consensus pattern (32 bp):
TTTAAGGGTTAGGGATTAAGGTTTAAGTGTGG
Found at i:119146344 original size:7 final size:7
Alignment explanation
Indices: 119146336--119146375 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
119146326 TAGGTGTAAG
*
119146336 GGGTTAG
1 GGGTTAA
*
119146343 GGGTTAG
1 GGGTTAA
119146350 GGGTTAA
1 GGGTTAA
119146357 GGGTTAA
1 GGGTTAA
119146364 GGGTTAA
1 GGGTTAA
119146371 GGGTT
1 GGGTT
119146376 CATGATTCAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (7 bp):
GGGTTAA
Found at i:119146965 original size:41 final size:42
Alignment explanation
Indices: 119146900--119146987 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
119146890 AATTAAAATT
* *
119146900 AAAATTGAGCAATAGTGG-CGTTTTTAG-GTAAAACGCCGCAA
1 AAAATTGAGCAATAGCGGCCTTTTTTAGTG-AAAACGCCGCAA
*
119146941 AAAATTGAGCTATAGCGGCCTTTTTTAGTGAAAACGCCGCAA
1 AAAATTGAGCAATAGCGGCCTTTTTTAGTGAAAACGCCGCAA
119146983 AAAAT
1 AAAAT
119146988 CTAAAAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 16 0.38
42 25 0.60
43 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (42 bp):
AAAATTGAGCAATAGCGGCCTTTTTTAGTGAAAACGCCGCAA
Found at i:119151844 original size:21 final size:21
Alignment explanation
Indices: 119151818--119151865 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
119151808 TCAACTTAGA
*
119151818 GCGGAGGCAGTAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
*
119151839 GCGGAGGTAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
119151860 GCGGAG
1 GCGGAG
119151866 CAGAACAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.15, G:0.58, T:0.04
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:119152209 original size:43 final size:43
Alignment explanation
Indices: 119152162--119152361 Score: 262
Period size: 43 Copynumber: 4.7 Consensus size: 43
119152152 GGGCAAATTC
*
119152162 GCGGCGTTTTTTAAAAAAGCGCTG-TAAAAAGTCCTGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCT-AAAAGTCCTGGTCTTTA
*
119152205 GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCCGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTA
* * * *
119152248 GCTGCG-TTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTA
*
119152290 GCAGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTA
1 GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTA
* * *
119152333 GTGGTGTTTTTTCGAAAAAA-CGCCACTAA
1 GCGGCGTTTTTT--AAAAAAGCGCCGCTAA
119152362 TTTTTGCGGC
Statistics
Matches: 138, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
42 37 0.27
43 86 0.62
44 9 0.07
45 6 0.04
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (43 bp):
GCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTA
Found at i:119152343 original size:85 final size:85
Alignment explanation
Indices: 119152169--119152333 Score: 267
Period size: 85 Copynumber: 1.9 Consensus size: 85
119152159 TTCGCGGCGT
* * *
119152169 TTTTTAAAAAAGCGCTGTAAAAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAA
1 TTTTTAAAAAAGCGCCGCAAAAAGTCCTGGTCTTTAGCAGCGTTTTTTAAAAAAGCGCCGCTAAA
119152234 AGTCCCGGTCTTTAGCTGCG
66 AGTCCCGGTCTTTAGCTGCG
* * *
119152254 TTTTTATAAAAGCGCCGCGAAAGGTCCTGGTCTTTAGCAGCGTTTTTTAAAAAAGCGCCGCTAAA
1 TTTTTAAAAAAGCGCCGCAAAAAGTCCTGGTCTTTAGCAGCGTTTTTTAAAAAAGCGCCGCTAAA
*
119152319 AGTCCTGGTCTTTAG
66 AGTCCCGGTCTTTAG
119152334 TGGTGTTTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (85 bp):
TTTTTAAAAAAGCGCCGCAAAAAGTCCTGGTCTTTAGCAGCGTTTTTTAAAAAAGCGCCGCTAAA
AGTCCCGGTCTTTAGCTGCG
Found at i:119152399 original size:27 final size:27
Alignment explanation
Indices: 119152362--119152426 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
119152352 ACGCCACTAA
119152362 TTTTTGCGGCGTTGCATATAGCGACGT
1 TTTTTGCGGCGTTGCATATAGCGACGT
119152389 TTTTTGCGGCGTTGCATATAGCGACGT
1 TTTTTGCGGCGTTGCATATAGCGACGT
119152416 TTTTTGCGGCG
1 TTTTTGCGGCG
119152427 CTTGGGAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.12, C:0.18, G:0.31, T:0.38
Consensus pattern (27 bp):
TTTTTGCGGCGTTGCATATAGCGACGT
Found at i:119157172 original size:59 final size:60
Alignment explanation
Indices: 119157081--119157240 Score: 211
Period size: 59 Copynumber: 2.7 Consensus size: 60
119157071 CCTACAACGG
* * *
119157081 GTTTTTTAAAAAA-AATTTATTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATA-TGA
1 GTTTTTAAAAAAATAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAAAATACTGA
* *
119157139 GTTTTTAAAAAAATAATTTTTTTTGTGCTGGCCTGTCCATGGCCGGCACCAAAATACGTGT
1 GTTTTTAAAAAAATAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAAAATAC-TGA
* *
119157200 TTTTTTAAAAAAATAA--TTTTTTGATGCTAGCCTGTCAATGG
1 GTTTTTAAAAAAATAATTTTTTTTG-TGCTGGCCTGTCAATGG
119157241 TGCCGGCCAT
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
58 12 0.13
59 46 0.51
60 15 0.17
61 17 0.19
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (60 bp):
GTTTTTAAAAAAATAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAAAATACTGA
Found at i:119159411 original size:146 final size:146
Alignment explanation
Indices: 119159145--119159437 Score: 532
Period size: 146 Copynumber: 2.0 Consensus size: 146
119159135 TTGATTGGTT
*
119159145 CTCTGTGTACAACGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
1 CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
119159210 GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
66 GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
* *
119159275 GTAAAAGTTCATTGTC
131 ATAAAAGTTAATTGTC
119159291 CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
1 CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
* * *
119159356 GTAACAAGTTCAAAGGTCTTTGTGAAGAAGATTATTCAACTTCAAAGTATTGGTTATAAAGTAAG
66 GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
119159421 ATAAAAGTTAATTGTC
131 ATAAAAGTTAATTGTC
119159437 C
1 C
119159438 AAAGTGTATA
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
146 141 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (146 bp):
CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
ATAAAAGTTAATTGTC
Found at i:119169640 original size:27 final size:28
Alignment explanation
Indices: 119169591--119169644 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
119169581 CAGAAATATG
* * *
119169591 ATTAATATAATTTTATTTGTTATTAATA
1 ATTAATATAATATTACTTATTATTAATA
119169619 ATTAA-ATAATATTACTTATTATTAAT
1 ATTAATATAATATTACTTATTATTAAT
119169645 CTGTTGGATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTAATATAATATTACTTATTATTAATA
Found at i:119171619 original size:3 final size:3
Alignment explanation
Indices: 119171613--119171642 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
119171603 CCCAACCCAC
119171613 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
119171643 TCATTACTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:119174276 original size:40 final size:40
Alignment explanation
Indices: 119174232--119174313 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
119174222 CATCGGGATG
119174232 CAAGTCTGACATGAGTAGGTTCAATTTTTCCAAGAACTTT
1 CAAGTCTGACATGAGTAGGTTCAATTTTTCCAAGAACTTT
119174272 CAAGTCTGACATGAGTAGGTTCAATTTTTCCAAGAACTTT
1 CAAGTCTGACATGAGTAGGTTCAATTTTTCCAAGAACTTT
119174312 CA
1 CA
119174314 TATATTTAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (40 bp):
CAAGTCTGACATGAGTAGGTTCAATTTTTCCAAGAACTTT
Found at i:119176769 original size:22 final size:23
Alignment explanation
Indices: 119176716--119176770 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
119176706 GTTTATAATT
*
119176716 ATAA-AAATAAAACAAATTTAGA
1 ATAATAAATATAACAAATTTAGA
* *
119176738 TTAATGAATATAACAAATTT-GA
1 ATAATAAATATAACAAATTTAGA
119176760 ATAATAAATAT
1 ATAATAAATAT
119176771 CTAAAATTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (23 bp):
ATAATAAATATAACAAATTTAGA
Found at i:119181790 original size:163 final size:164
Alignment explanation
Indices: 119181509--119181834 Score: 478
Period size: 163 Copynumber: 2.0 Consensus size: 164
119181499 CATCAACTAG
* * *
119181509 CATTATGAAAGCCTTGATTTTGAGCTTTCCAATAAGCATAGTTTGAGGATGCAATAAGTATTGGA
1 CATTATGAAAGCCTTGATTTTGAGCTTTCCAACAAGCATAGTTTAAGGATCCAATAAGTATTGGA
* * ** * *
119181574 GCTTGAGAGATGAAATTTCTTTTTATGGATTCCATAGTTGTAAATTATACAAAGAATCGTCTTTA
66 ACTTGAGAGATGAAATTTCTTTTCATGGATTCCATAGTTACAAATTATACAAAGAATCATCTTCA
* * *
119181639 ATTAACTCTTGAAGCTCA-TTCTGATACTAATTGT
131 AGTAACTCTTAAAGCTCACTT-TGATACCAATTGT
*
119181673 CATTATGAAAGCCTTGA-TTTGAGCTTTCCAACAAGCATAGTTTAAGGATCCAATTAGTATTGGA
1 CATTATGAAAGCCTTGATTTTGAGCTTTCCAACAAGCATAGTTTAAGGATCCAATAAGTATTGGA
* *
119181737 ACTTGAGAGATGAAACTTT-TTTTCATGGATTCCATGGTTACAAATTGTACAAAGAATCATCTTC
66 ACTTGAGAGATGAAA-TTTCTTTTCATGGATTCCATAGTTACAAATTATACAAAGAATCATCTTC
119181801 AAGTAACTCTTAAAGCTCACTTTGATACCAATTG
130 AAGTAACTCTTAAAGCTCACTTTGATACCAATTG
119181835 AAATGAACAA
Statistics
Matches: 145, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
163 123 0.85
164 22 0.15
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36
Consensus pattern (164 bp):
CATTATGAAAGCCTTGATTTTGAGCTTTCCAACAAGCATAGTTTAAGGATCCAATAAGTATTGGA
ACTTGAGAGATGAAATTTCTTTTCATGGATTCCATAGTTACAAATTATACAAAGAATCATCTTCA
AGTAACTCTTAAAGCTCACTTTGATACCAATTGT
Found at i:119183096 original size:12 final size:12
Alignment explanation
Indices: 119183077--119183107 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
119183067 TAAGGGTTAT
119183077 AAAAGGAAAAAA
1 AAAAGGAAAAAA
*
119183089 AGAAGGAAAAAA
1 AAAAGGAAAAAA
119183101 AAAAGGA
1 AAAAGGA
119183108 GACGCTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAAGGAAAAAA
Found at i:119189423 original size:32 final size:32
Alignment explanation
Indices: 119189382--119189453 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
119189372 TTTTAATGAT
* *
119189382 CTAAATTCCTACTCCTAGATGGTTCGCTATTA
1 CTAATTTCCTACTCCTAGATGGTTCACTATTA
119189414 CTAATTTCCTACTCCTAGATGGTTCACTATTA
1 CTAATTTCCTACTCCTAGATGGTTCACTATTA
119189446 CTAATTTC
1 CTAATTTC
119189454 ATTATACTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (32 bp):
CTAATTTCCTACTCCTAGATGGTTCACTATTA
Found at i:119197348 original size:24 final size:22
Alignment explanation
Indices: 119197300--119197363 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
119197290 AATAAAAGCA
119197300 TTTTATATTAATATTTAAATAT
1 TTTTATATTAATATTTAAATAT
119197322 TTTTATAATTAA-ATTTAAAAATAT
1 TTTTAT-ATTAATATTT--AAATAT
*
119197346 TTTT-T-TTATTATTTAAAT
1 TTTTATATTAATATTTAAAT
119197364 CAAATTTAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 14 0.38
23 6 0.16
24 10 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTATATTAATATTTAAATAT
Found at i:119198700 original size:3 final size:3
Alignment explanation
Indices: 119198694--119198723 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
119198684 TCTTATTTCA
119198694 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
119198724 AAGTGGGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:119198711 original size:22 final size:22
Alignment explanation
Indices: 119198671--119198712 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
119198661 AAGACGGGTA
*
119198671 ATATTATTAATAATCTTATTTC
1 ATATTATTAATAATATTATTTC
* *
119198693 ATATTATTATTATTATTATT
1 ATATTATTAATAATATTATT
119198713 ATTATTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATTATTAATAATATTATTTC
Found at i:119198853 original size:2 final size:2
Alignment explanation
Indices: 119198848--119198872 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119198838 TAAAAAAGTA
119198848 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
119198873 AAAGATAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119200253 original size:15 final size:17
Alignment explanation
Indices: 119200215--119200254 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
119200205 ATATCTTATC
*
119200215 AAAATATTATTATATTT
1 AAAATATTATTAGATTT
119200232 AAAATATT-TTAGATTT
1 AAAATATTATTAGATTT
119200248 -AAATATT
1 AAAATATT
119200255 CAATCGAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.32
16 7 0.32
17 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
AAAATATTATTAGATTT
Found at i:119205359 original size:1 final size:1
Alignment explanation
Indices: 119205353--119205378 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
119205343 TTTGCTTATC
119205353 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
119205379 GCTTATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:119210524 original size:5 final size:5
Alignment explanation
Indices: 119210514--119210539 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
119210504 ATTATTAACT
119210514 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
119210540 TATTTAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:119213421 original size:132 final size:132
Alignment explanation
Indices: 119213184--119213667 Score: 824
Period size: 132 Copynumber: 3.7 Consensus size: 132
119213174 CACGAGCATA
** *
119213184 TCTCCTTGATTAGAGATATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACACCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
* *
119213249 TTCATCAACTTGTGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
66 TTCAACAACTTGAGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
119213314 CC
131 CC
119213316 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
* *
119213381 TTCATCAACTTGTGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
66 TTCAACAACTTGAGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
119213446 CC
131 CC
119213448 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
* * * * * *
119213513 TTCAACAACTTGAGGGTTTTCTACGGTTGATAAAGTAGCCACGAGGGTACCTTCCTCCAACCTAG
66 TTCAACAACTTGAGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
119213578 CC
131 CC
* *
119213580 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTACTCCCATGCCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
*
119213645 TTCAACAACTTGAGGGTTTTCTA
66 TTCAACAACTTGAGGGGTTTCTA
119213668 AAGTAGCCAC
Statistics
Matches: 339, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 339 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (132 bp):
TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
TTCAACAACTTGAGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
CC
Found at i:119215560 original size:21 final size:23
Alignment explanation
Indices: 119215523--119215569 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
119215513 AGAGTTTTAT
*
119215523 TTTATTTTTACGATTTAATC-CA
1 TTTAATTTTACGATTTAATCACA
119215545 TTTAATTTTA-GATTTAATCACA
1 TTTAATTTTACGATTTAATCACA
119215567 TTT
1 TTT
119215570 TACTATGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.55
Consensus pattern (23 bp):
TTTAATTTTACGATTTAATCACA
Found at i:119216612 original size:26 final size:26
Alignment explanation
Indices: 119216583--119216638 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
119216573 ATTTTGTTTC
119216583 TATATCACTTTTCTAGAAATATTATT
1 TATATCACTTTTCTAGAAATATTATT
*
119216609 TATATCACTTTTTTAGAAATATTATT
1 TATATCACTTTTCTAGAAATATTATT
119216635 TATA
1 TATA
119216639 GATTGATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.52
Consensus pattern (26 bp):
TATATCACTTTTCTAGAAATATTATT
Found at i:119216880 original size:11 final size:12
Alignment explanation
Indices: 119216850--119216881 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
119216840 ACCCGCTCAG
119216850 ATTAATTTTTAT
1 ATTAATTTTTAT
119216862 ATTAATTTTTAT
1 ATTAATTTTTAT
119216874 ATT-ATTTT
1 ATTAATTTT
119216882 AAAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTAATTTTTAT
Found at i:119217050 original size:30 final size:30
Alignment explanation
Indices: 119217006--119217065 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
119216996 ACTCAACAAG
*
119217006 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
*
119217036 CAAATATCTTTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
119217066 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:119217123 original size:22 final size:22
Alignment explanation
Indices: 119217098--119217140 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
119217088 TATTCAAACA
119217098 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* * *
119217120 ATAATAATAAAATGGTAGCAA
1 ATAACAACAAAATAGTAGCAA
119217141 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:119222815 original size:50 final size:50
Alignment explanation
Indices: 119222689--119222815 Score: 175
Period size: 50 Copynumber: 2.5 Consensus size: 50
119222679 CCATGGCAAC
*
119222689 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACGCTTATCTGATCAAGGAAAAGTGA
* *
119222739 AAGTGATAAGTGATAGTTTCGGCTACGCTTATCTGATCAATGACAAA-TGA
1 AAGTGATAAGTGATAGCTTCGGCTACGCTTATCTGATCAAGGA-AAAGTGA
* * * *
119222789 CAGTGAAAAGTGGTAGCTTCTGCTACG
1 AAGTGATAAGTGATAGCTTCGGCTACG
119222816 TGATCAGTGA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 65 0.96
51 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACGCTTATCTGATCAAGGAAAAGTGA
Found at i:119222827 original size:31 final size:31
Alignment explanation
Indices: 119222789--119222969 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
119222779 TGACAAATGA
* * *
119222789 CAGTGAAAAGTGGTAGCTTCTGCTACGTGAT
1 CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
119222820 CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
1 CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
*
119222851 CAGTCAAAAGTGGTAGCTCCGGCTACCTGAT
1 CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
*
119222882 CAGTGAAAAGTGGTAGCTCCAGCTACCTGAT
1 CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
*
119222913 CAGTGAAAAATGGTAGCTCCGGCTACCTGAT
1 CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
* * *
119222944 CAGTGAATAGTAGTAGCTTCGGCTAC
1 CAGTGAAAAGTGGTAGCTCCGGCTAC
119222970 AAGTGACAAG
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 138 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (31 bp):
CAGTGAAAAGTGGTAGCTCCGGCTACCTGAT
Found at i:119223044 original size:46 final size:43
Alignment explanation
Indices: 119222994--119223150 Score: 133
Period size: 42 Copynumber: 3.7 Consensus size: 43
119222984 TTCCGTATAA
* * *
119222994 GACCATATCTGGGATATGGCATCAGTGAGATATGTGAT-TCGTGTAC
1 GACCATAGCTGGGCTATGGCATCA--GAGATATG-AATAT-GTGTAC
* *
119223040 GACCATAGCTGGGCTATAGCATC-GATATATGAATATGTGTAC
1 GACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTGTAC
** * * *
119223082 GACCATAGCTGGGCTATGGCATCA-TTATGTGAAAATGTGTAA
1 GACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTGTAC
* **
119223124 GACCATAGTTGAACTATGGCATC-GAGA
1 GACCATAGCTGGGCTATGGCATCAGAGA
119223151 AAACGAAGTA
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 65 0.70
43 8 0.09
46 20 0.22
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (43 bp):
GACCATAGCTGGGCTATGGCATCAGAGATATGAATATGTGTAC
Found at i:119223141 original size:42 final size:42
Alignment explanation
Indices: 119223034--119223148 Score: 151
Period size: 42 Copynumber: 2.7 Consensus size: 42
119223024 TATGTGATTC
* *
119223034 GTGTACGACCATAGCTGGGCTATAGCATCGATATATGAATAT
1 GTGTACGACCATAGCTGGGCTATGGCATCGATATATGAAAAT
*
119223076 GTGTACGACCATAGCTGGGCTATGGCATC-ATTATGTGAAAAT
1 GTGTACGACCATAGCTGGGCTATGGCATCGA-TATATGAAAAT
* * **
119223118 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTACGACCATAGCTGGGCTATGGCATCGA
119223149 GAAAACGAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
GTGTACGACCATAGCTGGGCTATGGCATCGATATATGAAAAT
Found at i:119224710 original size:13 final size:13
Alignment explanation
Indices: 119224689--119224731 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
119224679 GAGCAAAGAG
*
119224689 AGAAAAAGAAAAA
1 AGAAGAAGAAAAA
119224702 AGAAGAAGAAAAAGAA
1 AGAAGAAG--AAA-AA
119224718 AGAAGAAGAAAAA
1 AGAAGAAGAAAAA
119224731 A
1 A
119224732 TTAGTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 10 0.38
14 3 0.12
15 3 0.12
16 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AGAAGAAGAAAAA
Found at i:119224713 original size:19 final size:19
Alignment explanation
Indices: 119224684--119224731 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
119224674 TCCAGGAGCA
119224684 AAGAGAGAAAAAGAAAAAAG
1 AAGA-AGAAAAAGAAAAAAG
*
119224704 AAGAAGAAAAAGAAAGAAG
1 AAGAAGAAAAAGAAAAAAG
119224723 AAGAA-AAAA
1 AAGAAGAAAA
119224732 TTAGTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 4 0.15
19 19 0.70
20 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (19 bp):
AAGAAGAAAAAGAAAAAAG
Found at i:119224719 original size:16 final size:16
Alignment explanation
Indices: 119224700--119224730 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
119224690 GAAAAAGAAA
119224700 AAAGAAGAAGAAAAAG
1 AAAGAAGAAGAAAAAG
119224716 AAAGAAGAAGAAAAA
1 AAAGAAGAAGAAAAA
119224731 ATTAGTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAGAAGAAGAAAAAG
Found at i:119228818 original size:33 final size:34
Alignment explanation
Indices: 119228781--119229011 Score: 176
Period size: 33 Copynumber: 7.0 Consensus size: 34
119228771 AACGAAGGTA
* * *
119228781 GATACGA-CTCTGGAGGAGTAGAGTATGGTGGTG
1 GATACGAGCTCAGAAGGAGCAGAGTATGGTGGTG
* * * * * * *
119228814 GATACAAGC-CGGGAGGAGTAGAGAAT-GTCGATA
1 GATACGAGCTCAGAAGGAGCAGAGTATGGT-GGTG
** *
119228847 GATACGAGC-CAGAAGGAGTGGAGTACGGTGGTG
1 GATACGAGCTCAGAAGGAGCAGAGTATGGTGGTG
* *
119228880 GATA-GAGCT-AGAAGGAGCGGAGTACGGTGGTG
1 GATACGAGCTCAGAAGGAGCAGAGTATGGTGGTG
*
119228912 GATACGAGAT-AGAAGGAGCAGAGTATGGTGGTG
1 GATACGAGCTCAGAAGGAGCAGAGTATGGTGGTG
* *
119228945 GATACGAGCT-GGAAGGAGCAGAGTACT-ATGGTG
1 GATACGAGCTCAGAAGGAGCAGAGTA-TGGTGGTG
* * * *
119228978 GATACGAGC-CGGAAGGAGCGGAGTACGATGGTG
1 GATACGAGCTCAGAAGGAGCAGAGTATGGTGGTG
119229011 G
1 G
119229012 GCTGAAGATA
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
32 32 0.19
33 132 0.79
34 4 0.02
ACGTcount: A:0.29, C:0.11, G:0.43, T:0.17
Consensus pattern (34 bp):
GATACGAGCTCAGAAGGAGCAGAGTATGGTGGTG
Found at i:119228996 original size:66 final size:66
Alignment explanation
Indices: 119228794--119229011 Score: 224
Period size: 66 Copynumber: 3.3 Consensus size: 66
119228784 ACGACTCTGG
* * * * * * * * *
119228794 AGGAGTAGAGTATGGTGGTGGATACAAGCCGGGAGGAGTAGAG-AATGTCGATAGATACGAGCCA
1 AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGCAGAGTACTGT-GGTGGATACGAGCCA
119228858 GA
65 GA
** * * * **
119228860 AGGAGTGGAGTACGGTGGTGGATA-GAGCTAGAAGGAGCGGAGTACGGTGGTGGATACGAGATAG
1 AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGCAGAGTACTGTGGTGGATACGAGCCAG
119228924 A
66 A
* * *
119228925 AGGAGCAGAGTATGGTGGTGGATACGAGCTGGAAGGAGCAGAGTACTATGGTGGATACGAGCCGG
1 AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGCAGAGTACTGTGGTGGATACGAGCCAG
119228990 A
66 A
* *
119228991 AGGAGCGGAGTACGATGGTGG
1 AGGAGCAGAGTACGGTGGTGG
119229012 GCTGAAGATA
Statistics
Matches: 123, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
65 46 0.37
66 77 0.63
ACGTcount: A:0.30, C:0.10, G:0.44, T:0.17
Consensus pattern (66 bp):
AGGAGCAGAGTACGGTGGTGGATACGAGCTGGAAGGAGCAGAGTACTGTGGTGGATACGAGCCAG
A
Found at i:119231126 original size:18 final size:17
Alignment explanation
Indices: 119231090--119231127 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
119231080 AAATAGCTAT
119231090 AAAATTATTTTCTTAAA
1 AAAATTATTTTCTTAAA
119231107 AAAATATATATTTC-TAAA
1 AAAAT-TAT-TTTCTTAAA
119231125 AAA
1 AAA
119231128 TCATAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTATTTTCTTAAA
Found at i:119231952 original size:3 final size:3
Alignment explanation
Indices: 119231946--119231980 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
119231936 CGAATTTTTT
119231946 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
119231981 TTAAAAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:119238772 original size:11 final size:11
Alignment explanation
Indices: 119238756--119238780 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
119238746 ATCAAGTAAT
119238756 AAATGCGCATA
1 AAATGCGCATA
119238767 AAATGCGCATA
1 AAATGCGCATA
119238778 AAA
1 AAA
119238781 GTTCACATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (11 bp):
AAATGCGCATA
Found at i:119240205 original size:15 final size:15
Alignment explanation
Indices: 119240185--119240216 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
119240175 TGTCCTGAGA
*
119240185 AGATAATGAGCAGTG
1 AGATAATAAGCAGTG
119240200 AGATAATAAGCAGTG
1 AGATAATAAGCAGTG
119240215 AG
1 AG
119240217 TGATATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (15 bp):
AGATAATAAGCAGTG
Found at i:119251228 original size:21 final size:21
Alignment explanation
Indices: 119251204--119251243 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
119251194 AATAATGTTT
*
119251204 AAAT-TTAATTATACAAATATA
1 AAATATTAA-TATAAAAATATA
119251225 AAATATTAATATAAAAATA
1 AAATATTAATATAAAAATA
119251244 ATTTTAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATATTAATATAAAAATATA
Found at i:119256815 original size:20 final size:20
Alignment explanation
Indices: 119256792--119256829 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
119256782 AAGGTAAGGC
119256792 AATAACAAA-AAAATAAATAA
1 AATAACAAATAAAA-AAATAA
*
119256812 AATAAGAAATAAAAAAAT
1 AATAACAAATAAAAAAAT
119256830 CATGAAAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.16
Consensus pattern (20 bp):
AATAACAAATAAAAAAATAA
Found at i:119260042 original size:46 final size:46
Alignment explanation
Indices: 119259795--119260047 Score: 416
Period size: 46 Copynumber: 5.5 Consensus size: 46
119259785 GTGTGCTCTC
* *
119259795 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
119259841 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACG
*
119259887 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
119259933 TGATATGAAATGAATAAGACCATGGTTGAAAGATATCATGGCAACG
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACG
*
119259979 TGATATGAAATGGATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
119260025 TGATATGAAAAGAATAAGACCAT
1 TGATATGAAATGTATAAGACCAT
119260048 CATGACAGAA
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 199 1.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:119260199 original size:13 final size:13
Alignment explanation
Indices: 119260181--119260210 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
119260171 TCAGATGACG
119260181 AATGGTTATATGA
1 AATGGTTATATGA
*
119260194 AATGGTTATGTGA
1 AATGGTTATATGA
119260207 AATG
1 AATG
119260211 TTTACAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (13 bp):
AATGGTTATATGA
Found at i:119261497 original size:17 final size:17
Alignment explanation
Indices: 119261475--119261507 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
119261465 ATACATTTTT
*
119261475 TCTTTTATTGTTTCTGC
1 TCTTTTATTCTTTCTGC
119261492 TCTTTTATTCTTTCTG
1 TCTTTTATTCTTTCTG
119261508 TTTTTGCAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.18, G:0.09, T:0.67
Consensus pattern (17 bp):
TCTTTTATTCTTTCTGC
Found at i:119264088 original size:17 final size:17
Alignment explanation
Indices: 119264040--119264090 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
119264030 GAAACATTTA
119264040 TTTTAATGTTTTTAGTA-T
1 TTTTAAT-TTTTTA-TATT
* * *
119264058 TTTTGATGTGTTATATT
1 TTTTAATTTTTTATATT
119264075 TTTTAATTTTTTATAT
1 TTTTAATTTTTTATAT
119264091 AAAAATAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 2 0.08
17 18 0.69
18 6 0.23
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.69
Consensus pattern (17 bp):
TTTTAATTTTTTATATT
Found at i:119271400 original size:32 final size:33
Alignment explanation
Indices: 119271342--119271411 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
119271332 CCTCCTCCCT
119271342 TTTAGTATTTATTTTATTTTTTTAATTG-AATAA
1 TTTAGTATTTATTTTATTTTTTTAATTGAAAT-A
*
119271375 TTTAGTATTTGTTTTA-TTTTTTAATTGAAATA
1 TTTAGTATTTATTTTATTTTTTTAATTGAAATA
119271407 TTTAG
1 TTTAG
119271412 ACTTATTATC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
32 17 0.49
33 18 0.51
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.63
Consensus pattern (33 bp):
TTTAGTATTTATTTTATTTTTTTAATTGAAATA
Found at i:119276573 original size:20 final size:20
Alignment explanation
Indices: 119276548--119276591 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
119276538 TCCACGTTGA
*
119276548 TATTTAAAACTCATTTTAAC
1 TATTTAAAACACATTTTAAC
119276568 TATTTAAAACACATTTTAAC
1 TATTTAAAACACATTTTAAC
119276588 TATT
1 TATT
119276592 ACGTTGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTTAAAACACATTTTAAC
Found at i:119287530 original size:48 final size:48
Alignment explanation
Indices: 119287459--119287553 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
119287449 TCCCAATTGG
119287459 AACTCATGTGGAAAGTGCAGCCTGAATCAAGTATATACTCCTCGCTTT
1 AACTCATGTGGAAAGTGCAGCCTGAATCAAGTATATACTCCTCGCTTT
* *
119287507 AACTCATGTGGAAGGTGTAGCCTGAATCAAGTATATACTCCTCGCTT
1 AACTCATGTGGAAAGTGCAGCCTGAATCAAGTATATACTCCTCGCTT
119287554 ACTTTAGAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (48 bp):
AACTCATGTGGAAAGTGCAGCCTGAATCAAGTATATACTCCTCGCTTT
Found at i:119290758 original size:23 final size:23
Alignment explanation
Indices: 119290714--119290758 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
119290704 ATCAATTTAA
*
119290714 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
119290737 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
119290759 CACGTATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:119298793 original size:108 final size:108
Alignment explanation
Indices: 119298676--119298876 Score: 366
Period size: 108 Copynumber: 1.9 Consensus size: 108
119298666 TCAAAAATTT
* *
119298676 TCAAAAATTTTATCAGAGTAATTAGCAAAAATTTTAATACAATTTTGTTAAAAATTTTATTATTT
1 TCAAAAATTTTATCAAAGTAATTAACAAAAATTTTAATACAATTTTGTTAAAAATTTTATTATTT
119298741 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
*
119298784 TCAAAAATTTTATCAAAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAAAGTAATTAACAAAAATTTTAATACAATTTTGTTAAAAATTTTATTATTT
*
119298849 AAAACTTATTCTAACTTAACATATCATT
66 AAAACTTATTCCAACTTAACATATCATT
119298877 TTAAAAAAAC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 89 1.00
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (108 bp):
TCAAAAATTTTATCAAAGTAATTAACAAAAATTTTAATACAATTTTGTTAAAAATTTTATTATTT
AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
Found at i:119299852 original size:21 final size:22
Alignment explanation
Indices: 119299823--119299864 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
119299813 CATTTTTATT
119299823 ATTTAT-AAAAAACATAAAATA
1 ATTTATAAAAAAACATAAAATA
*
119299844 ATTTTTAAAAAAACATAAAAT
1 ATTTATAAAAAAACATAAAAT
119299865 CTTAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (22 bp):
ATTTATAAAAAAACATAAAATA
Found at i:119300673 original size:29 final size:29
Alignment explanation
Indices: 119300641--119300696 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
119300631 AACCAGAAAA
*
119300641 TTAA-GTTATTTTCATAATTAATCAAAATT
1 TTAAGGTTATTTTCATAA-TAATAAAAATT
*
119300670 TTAAGGTTATTTTTATAATAATAAAAA
1 TTAAGGTTATTTTCATAATAATAAAAA
119300697 AAGCCCACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (29 bp):
TTAAGGTTATTTTCATAATAATAAAAATT
Found at i:119303924 original size:19 final size:20
Alignment explanation
Indices: 119303884--119303924 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
119303874 AAGTCTGTCC
**
119303884 ATATTATTTTTAATTTTTTA
1 ATATTATTTTTAATTTAATA
119303904 ATATTA-TTTTAATTTAATA
1 ATATTATTTTTAATTTAATA
119303923 AT
1 AT
119303925 TTTTTATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATATTATTTTTAATTTAATA
Found at i:119303942 original size:25 final size:27
Alignment explanation
Indices: 119303894--119303943 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
119303884 ATATTATTTT
**
119303894 TAATTTTTTAATATTATTTTAATTTAA
1 TAATTTTTTAATATTATTAAAATTTAA
119303921 TAATTTTTT-AT-TTATTAAAATTT
1 TAATTTTTTAATATTATTAAAATTT
119303944 TCTATATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 2 0.10
27 9 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
TAATTTTTTAATATTATTAAAATTTAA
Found at i:119304469 original size:16 final size:16
Alignment explanation
Indices: 119304440--119304485 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
119304430 ACTTTATTAT
*
119304440 TATTATTATTAATTTTA
1 TATTATT-TTAATTTAA
119304457 TATTATTTTAATTTAA
1 TATTATTTTAATTTAA
119304473 TATT-TTTT-ATTTA
1 TATTATTTTAATTTA
119304486 TTGAGTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 5 0.18
15 4 0.14
16 12 0.43
17 7 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTTTAATTTAA
Found at i:119308355 original size:44 final size:44
Alignment explanation
Indices: 119308307--119308395 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
119308297 ATCTTGGTTG
*
119308307 AATCTCTGTTGAGCAACACATTAAAATTTCCTTTCAATGCTCTT
1 AATCTCTGTTGAGCAACACACTAAAATTTCCTTTCAATGCTCTT
* *
119308351 AATCTCTGTTGAGCAACTCACTAAAATTTCCTTTCAATGTTCTT
1 AATCTCTGTTGAGCAACACACTAAAATTTCCTTTCAATGCTCTT
119308395 A
1 A
119308396 CATTCCCAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (44 bp):
AATCTCTGTTGAGCAACACACTAAAATTTCCTTTCAATGCTCTT
Found at i:119309987 original size:24 final size:24
Alignment explanation
Indices: 119309960--119310015 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
119309950 AAATATATTA
119309960 ATAAAATAAATTTATAT-TAAATAT
1 ATAAAATAAATTTA-ATGTAAATAT
* * *
119309984 ATAATATTATTTTAATGTAAATAT
1 ATAAAATAAATTTAATGTAAATAT
119310008 -TAAAATAA
1 ATAAAATAA
119310016 TATTAAGATG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
ATAAAATAAATTTAATGTAAATAT
Found at i:119312201 original size:31 final size:29
Alignment explanation
Indices: 119312163--119312221 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 29
119312153 AATATTAAAA
* *
119312163 TTATACATGAATTTTTATTTAATGTGTAATG
1 TTATACATGAACTTTGATTT--TGTGTAATG
119312194 TTATACATGAACTTTGATTTTGTGTAAT
1 TTATACATGAACTTTGATTTTGTGTAAT
119312222 TTTTATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
31 18 0.69
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.51
Consensus pattern (29 bp):
TTATACATGAACTTTGATTTTGTGTAATG
Found at i:119316037 original size:31 final size:31
Alignment explanation
Indices: 119315994--119316054 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
119315984 TTGCAAGATC
*
119315994 AACGGCTCTGATATCCTT-GTGATGGACATCT
1 AACGGCTCTGATAT-CTTCATGATGGACATCT
*
119316025 AACGGCTTTGATATCTTCATGATGGACATC
1 AACGGCTCTGATATCTTCATGATGGACATC
119316055 ACACGGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (31 bp):
AACGGCTCTGATATCTTCATGATGGACATCT
Found at i:119318039 original size:31 final size:31
Alignment explanation
Indices: 119318001--119318062 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
119317991 TATTTAATTC
119318001 AACAATTATATACAAATATTAAAAATAATAA
1 AACAATTATATACAAATATTAAAAATAATAA
119318032 AACAATTATATACAAATATTAAAAATAATAA
1 AACAATTATATACAAATATTAAAAATAATAA
119318063 TCCAAGCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (31 bp):
AACAATTATATACAAATATTAAAAATAATAA
Found at i:119319047 original size:3 final size:3
Alignment explanation
Indices: 119319039--119319064 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
119319029 CATTCTACAA
119319039 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
119319065 ACATGTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:119328858 original size:26 final size:25
Alignment explanation
Indices: 119328815--119328872 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
119328805 TAAGATTACT
*
119328815 ATATAAAAATTTTCAATAAATAAAA-A
1 ATAT-AAAATTTTAAAT-AATAAAATA
*
119328841 ATATAAAATTATTAAATATTAAAATA
1 ATATAAAATT-TTAAATAATAAAATA
119328867 ATATAA
1 ATATAA
119328873 TATAAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
ATATAAAATTTTAAATAATAAAATA
Found at i:119328956 original size:10 final size:10
Alignment explanation
Indices: 119328941--119328974 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
119328931 TGATCTTTTG
119328941 CAAATATGGA
1 CAAATATGGA
*
119328951 CAAATATGAA
1 CAAATATGGA
119328961 CAAATATGGA
1 CAAATATGGA
119328971 CAAA
1 CAAA
119328975 ATTTTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.18
Consensus pattern (10 bp):
CAAATATGGA
Found at i:119332285 original size:22 final size:23
Alignment explanation
Indices: 119332260--119332302 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
119332250 AATTTAAATC
*
119332260 ATTAATACA-ATTAAATTTTTTT
1 ATTAAGACACATTAAATTTTTTT
*
119332282 ATTAAGACACATTATATTTTT
1 ATTAAGACACATTAAATTTTT
119332303 AAGAGGAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (23 bp):
ATTAAGACACATTAAATTTTTTT
Found at i:119333142 original size:16 final size:16
Alignment explanation
Indices: 119333121--119333153 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
119333111 TTTTTCAAAA
119333121 ATTGAATAAGTTACTT
1 ATTGAATAAGTTACTT
119333137 ATTGAATAAGTTACTT
1 ATTGAATAAGTTACTT
119333153 A
1 A
119333154 CCTAAATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.42
Consensus pattern (16 bp):
ATTGAATAAGTTACTT
Found at i:119336634 original size:21 final size:21
Alignment explanation
Indices: 119336608--119336648 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
119336598 AGACGAGCGA
* *
119336608 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
119336629 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
119336649 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:119341423 original size:51 final size:51
Alignment explanation
Indices: 119341355--119341465 Score: 195
Period size: 51 Copynumber: 2.2 Consensus size: 51
119341345 ATCACATTTA
*
119341355 TCACTTGTCACTGATCAGATAAGTGTAGTTAAAACTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTG
*
119341406 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTG
*
119341457 TCGCTTGTC
1 TCACTTGTC
119341466 GCTTGTTGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTG
Found at i:119341463 original size:7 final size:7
Alignment explanation
Indices: 119341453--119341496 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
119341443 CCACTTATCA
119341453 CTTGTCG
1 CTTGTCG
119341460 CTTGTCG
1 CTTGTCG
*
119341467 CTTGTTG
1 CTTGTCG
*
119341474 CTTGTTG
1 CTTGTCG
*
119341481 CTTGTCA
1 CTTGTCG
*
119341488 CTTATCG
1 CTTGTCG
119341495 CT
1 CT
119341497 GATCAGATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.05, C:0.25, G:0.23, T:0.48
Consensus pattern (7 bp):
CTTGTCG
Found at i:119348496 original size:16 final size:16
Alignment explanation
Indices: 119348477--119348518 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
119348467 GTTTAAGTTG
119348477 TTTCAAGTTCA-GATCA
1 TTTCAAGTTCATG-TCA
*
119348493 TTTCAAATTCATGTCA
1 TTTCAAGTTCATGTCA
*
119348509 TTCCAAGTTC
1 TTTCAAGTTC
119348519 GGGCATGGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (16 bp):
TTTCAAGTTCATGTCA
Found at i:119357629 original size:2 final size:2
Alignment explanation
Indices: 119357618--119357655 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
119357608 ACAGCTATGA
119357618 AT AT -T AT AT AT AT AT AT A- AT AT AT AT AT AT AT AGT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
119357656 ATCTCCATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 2 0.06
2 29 0.88
3 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:119357639 original size:13 final size:13
Alignment explanation
Indices: 119357618--119357648 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
119357608 ACAGCTATGA
*
119357618 ATATTATATATAT
1 ATATAATATATAT
119357631 ATATAATATATAT
1 ATATAATATATAT
119357644 ATATA
1 ATATA
119357649 TAGTATAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:119357642 original size:15 final size:15
Alignment explanation
Indices: 119357622--119357655 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
119357612 CTATGAATAT
119357622 TATATATATATATAA
1 TATATATATATATAA
*
119357637 TATATATATATATAG
1 TATATATATATATAA
119357652 TATA
1 TATA
119357656 ATCTCCATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
TATATATATATATAA
Found at i:119357655 original size:13 final size:12
Alignment explanation
Indices: 119357618--119357655 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
119357608 ACAGCTATGA
119357618 ATAT-TATATAT
1 ATATATATATAT
119357629 ATATATA-ATAT
1 ATATATATATAT
119357640 ATATATATATAGT
1 ATATATATATA-T
119357653 ATA
1 ATA
119357656 ATCTCCATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 15 0.62
12 5 0.21
13 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
ATATATATATAT
Found at i:119363951 original size:17 final size:19
Alignment explanation
Indices: 119363918--119363956 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
119363908 TTATCCATAA
119363918 TTTCATGATTTTATATT-T
1 TTTCATGATTTTATATTAT
*
119363936 TTTCAT-ATTTTTTATTAT
1 TTTCATGATTTTATATTAT
119363954 TTT
1 TTT
119363957 TGTTTTGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTCATGATTTTATATTAT
Found at i:119366287 original size:51 final size:50
Alignment explanation
Indices: 119366128--119366284 Score: 251
Period size: 51 Copynumber: 3.1 Consensus size: 50
119366118 ACTTCTGATC
* *
119366128 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAGTGACA
* *
119366179 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
*
119366229 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
119366280 AGTGA
1 AGTGA
119366285 TAAATGTGAT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
50 46 0.47
51 52 0.53
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:119368098 original size:35 final size:35
Alignment explanation
Indices: 119368071--119368236 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
119368061 CATGGCAAAG
*
119368071 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
119368106 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
119368141 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
119368181 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
119368216 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
119368237 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Done.