Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 393 of 410
Found at i:119368190 original size:75 final size:75
Alignment explanation
Indices: 119368071--119368241 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
119368061 CATGGCAAAG
** *
119368071 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
119368130 CCATACTGAGC
65 CCATACCGAGC
119368141 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
119368206 CATACCGAGT
66 CATACCGAGC
**
119368216 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
119368242 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:119375595 original size:35 final size:35
Alignment explanation
Indices: 119375568--119375733 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
119375558 CATGGCAAAG
*
119375568 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
119375603 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
119375638 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
119375678 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
119375713 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
119375734 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:119375687 original size:75 final size:75
Alignment explanation
Indices: 119375568--119375738 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
119375558 CATGGCAAAG
** *
119375568 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
119375627 CCATACTGAGC
65 CCATACCGAGC
119375638 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
119375703 CATACCGAGT
66 CATACCGAGC
**
119375713 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
119375739 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:119378741 original size:44 final size:45
Alignment explanation
Indices: 119378653--119378779 Score: 139
Period size: 44 Copynumber: 2.8 Consensus size: 45
119378643 AGAACAGAAA
*
119378653 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
* * *
119378699 TGAGCCATGTAAGTTCATATT-ATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
* ** * * *
119378743 TAATTCATTTAAGTCCATGTCAAAGATATGGCATTGG
1 TGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
119378780 CAGGATATTG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 34 0.51
45 1 0.01
46 32 0.48
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:119385614 original size:18 final size:18
Alignment explanation
Indices: 119385591--119385625 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
119385581 TCTCACTTCT
119385591 TGCATTATAATTAACTTG
1 TGCATTATAATTAACTTG
* *
119385609 TGCATTGTAGTTAACTT
1 TGCATTATAATTAACTT
119385626 TTTGTACTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (18 bp):
TGCATTATAATTAACTTG
Found at i:119385932 original size:23 final size:22
Alignment explanation
Indices: 119385898--119385967 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 22
119385888 GTAAACTTGT
119385898 TTGTGATCTAAAAGTATGTTAAC
1 TTGTGATCTAAAA-TATGTTAAC
* *
119385921 TTGTGATGT-AAATTTG-T---
1 TTGTGATCTAAAATATGTTAAC
119385938 TTGTGATCTAAAAATATGTTAAC
1 TTGTGATCT-AAAATATGTTAAC
119385961 TTGTGAT
1 TTGTGAT
119385968 GTAGATTTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
17 8 0.22
19 6 0.16
20 2 0.05
21 3 0.08
22 3 0.08
23 15 0.41
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (22 bp):
TTGTGATCTAAAATATGTTAAC
Found at i:119385939 original size:40 final size:40
Alignment explanation
Indices: 119385884--119386002 Score: 202
Period size: 40 Copynumber: 3.0 Consensus size: 40
119385874 ATGCCTAGTT
* *
119385884 TGATGTAAACTTGTTTGTGATCTAAAAGTATGTTAACTTG
1 TGATGTAAATTTGTTTGTGATCTAAAAATATGTTAACTTG
119385924 TGATGTAAATTTGTTTGTGATCTAAAAATATGTTAACTTG
1 TGATGTAAATTTGTTTGTGATCTAAAAATATGTTAACTTG
* *
119385964 TGATGTAGATTTGTTTGTGATTTAAAAATATGTTAACTT
1 TGATGTAAATTTGTTTGTGATCTAAAAATATGTTAACTT
119386003 CCTACTTAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.31, C:0.05, G:0.18, T:0.45
Consensus pattern (40 bp):
TGATGTAAATTTGTTTGTGATCTAAAAATATGTTAACTTG
Found at i:119387379 original size:24 final size:24
Alignment explanation
Indices: 119387347--119387395 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
119387337 TAGTTCAGTT
119387347 TAGTTCATTTATTTTATTTTTGGC
1 TAGTTCATTTATTTTATTTTTGGC
119387371 TAGTTCATTTATTTTATTTTTGGC
1 TAGTTCATTTATTTTATTTTTGGC
119387395 T
1 T
119387396 TCCTACCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.63
Consensus pattern (24 bp):
TAGTTCATTTATTTTATTTTTGGC
Found at i:119388066 original size:33 final size:33
Alignment explanation
Indices: 119388027--119388113 Score: 165
Period size: 33 Copynumber: 2.6 Consensus size: 33
119388017 TTTAAAGGAG
119388027 ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA
1 ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA
*
119388060 ATAGTCTCCGCTCAGACAGCGGTAAGCAAAGTA
1 ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA
119388093 ATAGTCTCCGCTCAGACAGTG
1 ATAGTCTCCGCTCAGACAGTG
119388114 CGAAACGTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (33 bp):
ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA
Found at i:119396232 original size:16 final size:16
Alignment explanation
Indices: 119396211--119396245 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
119396201 GATTGGCTAG
*
119396211 CATGCAAATATGCATA
1 CATGCAAATATACATA
*
119396227 CATGCATATATACATA
1 CATGCAAATATACATA
119396243 CAT
1 CAT
119396246 CATACATGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (16 bp):
CATGCAAATATACATA
Found at i:119396372 original size:178 final size:179
Alignment explanation
Indices: 119396048--119396374 Score: 444
Period size: 178 Copynumber: 1.8 Consensus size: 179
119396038 CACGCACATG
* * * * * * *
119396048 CATGCATGCATACATATATACATACATGGCGTTTGCTTTAGTAAACTGAGACATGAACAGGGCTC
1 CATGCATACATACATACATACATACATGGCATTTACTTCAGTAAACTGAGACATGAAAAGGGCAC
* * * *
119396113 TGATATATATTTCTCAACCCATCAAAACCTAGGTCCTCAGTACTATTATAGGTAGCCATATATGA
66 TCATATATATTTCTCAACCCATCAAAACCTAGGTCCTCAGAACGATTATAGGTAGCCATAAATGA
**
119396178 ATCATCAATGCATGTTGAACCTAGATTGGCTAGCATGCAAATATGCATA
131 ATCATCAACACATGTTGAACCTAGATTGGCTAGCATGCAAATATGCATA
* *
119396227 CATGCATATATACATACAT-CATACATGGCATTTACTTCAGTAAACTGAGACCA-GAAAAGGTCA
1 CATGCATACATACATACATACATACATGGCATTTACTTCAGTAAACTGAGA-CATGAAAAGGGCA
* * *
119396290 CTCATAT-TAATTTCTCAATCCATCAAAATCTAGGTCCTCAGAACGATTTTAGGTAGCCATAAAT
65 CTCATATAT-ATTTCTCAACCCATCAAAACCTAGGTCCTCAGAACGATTATAGGTAGCCATAAAT
*
119396354 GAATCATGAACACATGTTGAA
129 GAATCATCAACACATGTTGAA
119396375 TCCAAAGTGA
Statistics
Matches: 127, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
177 1 0.01
178 108 0.85
179 18 0.14
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (179 bp):
CATGCATACATACATACATACATACATGGCATTTACTTCAGTAAACTGAGACATGAAAAGGGCAC
TCATATATATTTCTCAACCCATCAAAACCTAGGTCCTCAGAACGATTATAGGTAGCCATAAATGA
ATCATCAACACATGTTGAACCTAGATTGGCTAGCATGCAAATATGCATA
Found at i:119407421 original size:28 final size:28
Alignment explanation
Indices: 119407381--119407440 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
119407371 TATTCTCAAA
119407381 TTACTGATGATATTCAGGTCTTTGAACC
1 TTACTGATGATATTCAGGTCTTTGAACC
119407409 TTACTGATGATATTCAGGTCTTTGAACC
1 TTACTGATGATATTCAGGTCTTTGAACC
119407437 TTAC
1 TTAC
119407441 ATTTTTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (28 bp):
TTACTGATGATATTCAGGTCTTTGAACC
Found at i:119412170 original size:85 final size:85
Alignment explanation
Indices: 119412027--119412198 Score: 317
Period size: 85 Copynumber: 2.0 Consensus size: 85
119412017 TCGTGGTTGG
*
119412027 AAGCTTGGAATCACTCGCGGTGTTGCAAAGTGATTTTGGCCAGAGTGAGAGGCTCGAGTTACTAC
1 AAGCTTGGAATCACTCGCGGTGTTGCAAAGTGATTTTGGCCAGAGTGAGAGCCTCGAGTTACTAC
* *
119412092 TAATTTATCATAAAATTATA
66 TAATTGATAATAAAATTATA
119412112 AAGCTTGGAATCACTCGCGGTGTTGCAAAGTGATTTTGGCCAGAGTGAGAGCCTCGAGTTACTAC
1 AAGCTTGGAATCACTCGCGGTGTTGCAAAGTGATTTTGGCCAGAGTGAGAGCCTCGAGTTACTAC
119412177 TAATTGATAATAAAATTATA
66 TAATTGATAATAAAATTATA
119412197 AA
1 AA
119412199 AATGTTATCG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (85 bp):
AAGCTTGGAATCACTCGCGGTGTTGCAAAGTGATTTTGGCCAGAGTGAGAGCCTCGAGTTACTAC
TAATTGATAATAAAATTATA
Found at i:119412303 original size:14 final size:14
Alignment explanation
Indices: 119412284--119412312 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
119412274 ATTAAACTGC
119412284 ATTACATATTTGAA
1 ATTACATATTTGAA
119412298 ATTACATATTTGAA
1 ATTACATATTTGAA
119412312 A
1 A
119412313 AGTATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
ATTACATATTTGAA
Found at i:119413120 original size:94 final size:94
Alignment explanation
Indices: 119412957--119413142 Score: 300
Period size: 94 Copynumber: 2.0 Consensus size: 94
119412947 TTATGCGTAT
* * * * *
119412957 TTAGTTAAAAATTATTCTATTATCTATGAATAGGAGTGGCGTAAAAGAAGCCCATTTATTACAAG
1 TTAGTCAAAAATTATTCTATTATCTATGAATAAGAGTGGAGTAAAAGAAGCCCATTAATTACAAA
119413022 TCAAGACTTTAGTTCCATCAACGTGTTAC
66 TCAAGACTTTAGTTCCATCAACGTGTTAC
* * *
119413051 TTAGTCAAAAATTATTCTATTATCTATGTATAAGAGTGGAGTACAATAAGCCCATTAATTACAAA
1 TTAGTCAAAAATTATTCTATTATCTATGAATAAGAGTGGAGTAAAAGAAGCCCATTAATTACAAA
119413116 TCAAGACTTTAGTTCCATCAACGTGTT
66 TCAAGACTTTAGTTCCATCAACGTGTT
119413143 TGTAATAGGC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 84 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (94 bp):
TTAGTCAAAAATTATTCTATTATCTATGAATAAGAGTGGAGTAAAAGAAGCCCATTAATTACAAA
TCAAGACTTTAGTTCCATCAACGTGTTAC
Found at i:119414730 original size:15 final size:15
Alignment explanation
Indices: 119414710--119414754 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
119414700 ATTAAAAATG
119414710 TTATTAAATTATATA
1 TTATTAAATTATATA
119414725 TTATTAAATTATATA
1 TTATTAAATTATATA
* *
119414740 TAATAATAATTATAT
1 TTATTA-AATTATAT
119414755 TAAAATATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 19 0.70
16 8 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTATTAAATTATATA
Found at i:119414936 original size:44 final size:46
Alignment explanation
Indices: 119414885--119414976 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 46
119414875 TATTACAACA
119414885 TCTATTCCATTCAACCAAACACA-AGAATT-CT-ATTACAGCTCTAT
1 TCTATTCCATTCAACCAAACA-ATAGAATTACTGATTACAGCTCTAT
* *
119414929 TCTATTCCATTGAACCAAACAATTGAATTACTGATTACAGCTCTAT
1 TCTATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTAT
119414975 TC
1 TC
119414977 CATTACAACT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 25 0.58
45 2 0.05
46 15 0.35
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.34
Consensus pattern (46 bp):
TCTATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTAT
Found at i:119414983 original size:16 final size:16
Alignment explanation
Indices: 119414962--119415017 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
119414952 TGAATTACTG
119414962 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
119414978 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
*
119414994 ATTACAGCCCCTATTCC
1 ATTACAG-CTCTATTCC
119415011 ATTACAG
1 ATTACAG
119415018 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 20 0.59
17 14 0.41
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.34
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:119415634 original size:23 final size:23
Alignment explanation
Indices: 119415608--119415668 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
119415598 TGAAGTTCTT
119415608 TTTTATATCATATT-ATTTTAACA
1 TTTTATAT-ATATTGATTTTAACA
* * *
119415631 TTTTGTATAATATTTGGTTTTAATA
1 TTTTATAT-ATA-TTGATTTTAACA
119415656 TTTTATATATATT
1 TTTTATATATATT
119415669 TGTACATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 12 0.39
24 5 0.16
25 14 0.45
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTTATATATATTGATTTTAACA
Found at i:119415651 original size:25 final size:24
Alignment explanation
Indices: 119415623--119415670 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
119415613 TATCATATTA
*
119415623 TTTTAACATTTTGTATAATATTTGG
1 TTTTAACATTTTATAT-ATATTTGG
*
119415648 TTTTAATATTTTATATATATTTG
1 TTTTAACATTTTATATATATTTG
119415671 TACATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.60
Consensus pattern (24 bp):
TTTTAACATTTTATATATATTTGG
Found at i:119415792 original size:195 final size:199
Alignment explanation
Indices: 119415480--119415875 Score: 595
Period size: 195 Copynumber: 2.0 Consensus size: 199
119415470 ATTTTAGCTC
* *
119415480 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAGAATTCATTTAATATTTTTTATAT
1 TATTTTAATTGAGTTTTCTATTTGTATAACTTAC--TTTTAAAATTCACTTAATATTTTTTATAT
* * * ***
119415545 ATGTGTTGAGCTATTTTAATAATTTTGCTTTGTTTTTATTTGTATAATTATTTTGAAGTTCTTTT
64 ATGTGTTGAACTATTTTAATAATTTTACTTTATTTTTATTAAAATAATTATTTTGAAGTTCTTTT
* ** *
119415610 TTATATCATATTATTTTAACATTTTGTATAATATTTGGTTTTAAT-ATTTTATATATATTTGTAC
129 TTATATCATATTATTTTAACATTTTATATAATATTTCATTTAAATGATTTTATATATATTTGTAC
119415674 ATATAT
194 ATATAT
*
119415680 TATTTTGATTGAGTTTTCTATTTGTAT-A-TTAC-TTTAAAATTCACTTAATATTTTTTATATAT
1 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTTTTAAAATTCACTTAATATTTTTTATATAT
*
119415742 GTGTTGAACTATTTTTAATAATTTTACTTTATTTTTA-TAAAATCATTATTTTGAAGTTCTTTTT
66 GTGTTGAACTA-TTTTAATAATTTTACTTTATTTTTATTAAAATAATTATTTTGAAGTTCTTTTT
*
119415806 TATATCATATTATTTTAACATTTTATATAATATTTCATTTAAATGTTTTTATATATATTTGTACA
130 TATATCATATTATTTTAACATTTTATATAATATTTCATTTAAATGATTTTATATATATTTGTACA
119415871 TATAT
195 TATAT
119415876 AATTCATGGT
Statistics
Matches: 179, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
195 101 0.56
196 47 0.26
198 4 0.02
199 1 0.01
200 26 0.15
ACGTcount: A:0.30, C:0.06, G:0.07, T:0.58
Consensus pattern (199 bp):
TATTTTAATTGAGTTTTCTATTTGTATAACTTACTTTTAAAATTCACTTAATATTTTTTATATAT
GTGTTGAACTATTTTAATAATTTTACTTTATTTTTATTAAAATAATTATTTTGAAGTTCTTTTTT
ATATCATATTATTTTAACATTTTATATAATATTTCATTTAAATGATTTTATATATATTTGTACAT
ATAT
Found at i:119419401 original size:36 final size:36
Alignment explanation
Indices: 119419357--119419433 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
119419347 TGTCAAATTC
*
119419357 TATATAAAATGAATTTTTAATAGGTAAAAAATCATA
1 TATATAAAATGAATTATTAATAGGTAAAAAATCATA
*
119419393 TATATAAAATTAATTATTAATAGGTAAAAAATCATA
1 TATATAAAATGAATTATTAATAGGTAAAAAATCATA
119419429 TATAT
1 TATAT
119419434 GCTATAATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (36 bp):
TATATAAAATGAATTATTAATAGGTAAAAAATCATA
Found at i:119420614 original size:20 final size:20
Alignment explanation
Indices: 119420591--119420664 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
119420581 TTTATATAAA
*
119420591 TTTTAATATTTTATTAATTT
1 TTTTAAAATTTTATTAATTT
** *
119420611 TTTTATCATTTT-TATAAGTT
1 TTTTAAAATTTTAT-TAATTT
* *
119420631 TTTAAAAATTTTAATATATTT
1 TTTTAAAATTTTATTA-ATTT
*
119420652 TTATAAAATTTTA
1 TTTTAAAATTTTA
119420665 AATATGTTTT
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
19 1 0.02
20 26 0.63
21 14 0.34
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (20 bp):
TTTTAAAATTTTATTAATTT
Found at i:119420669 original size:20 final size:20
Alignment explanation
Indices: 119420629--119420676 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
119420619 TTTTTATAAG
119420629 TTTTTAAAAATTTTAATATA
1 TTTTTAAAAATTTTAATATA
*
119420649 TTTTTATAAAATTTTAAATATG
1 TTTTTA-AAAATTTT-AATATA
119420671 TTTTTA
1 TTTTTA
119420677 TTAATTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.24
21 8 0.32
22 11 0.44
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTTTAAAAATTTTAATATA
Found at i:119420682 original size:21 final size:21
Alignment explanation
Indices: 119420628--119420685 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
119420618 ATTTTTATAA
*
119420628 GTTTTTAAAAATTTT-AATAT
1 GTTTTTATAAATTTTAAATAT
*
119420648 ATTTTTATAAAATTTTAAATAT
1 GTTTTTAT-AAATTTTAAATAT
*
119420670 GTTTTTATTAATTTTA
1 GTTTTTATAAATTTTA
119420686 TAAAATTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 6 0.19
21 14 0.44
22 12 0.38
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
GTTTTTATAAATTTTAAATAT
Found at i:119421939 original size:15 final size:16
Alignment explanation
Indices: 119421921--119421961 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
119421911 TTTAAATCTC
119421921 TAAATTATAAAAAT-A
1 TAAATTATAAAAATGA
*
119421936 TAAATTATTAAAATGA
1 TAAATTATAAAAATGA
119421952 TAATATTATA
1 TAA-ATTATA
119421962 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 13 0.59
16 4 0.18
17 5 0.23
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
TAAATTATAAAAATGA
Found at i:119422125 original size:139 final size:139
Alignment explanation
Indices: 119421960--119422234 Score: 367
Period size: 139 Copynumber: 2.0 Consensus size: 139
119421950 GATAATATTA
* * * * *
119421960 TATTTTTACTATCGTAAAAATATATAATTTAATTCCAATCTTTTTAAAAGAAATTTTTAACACCA
1 TATTTTTACTATCATAAAAATATATAATTTAATTACAAT-ATTTTAAAA-AAAATTCTAACACCA
* * * *
119422025 C-ATCTTAATATAATCCAACCTAATAATATTTTACATGCCTGAG-AAAGAAGAACTTCAAAATTA
64 CGAACTTAATATAATCCAACCTAATAATATTTTACACGCCTGAGAAAAAAAGAACATCAAAATTA
119422088 AAAGAATTTTT
129 AAAGAATTTTT
**
119422099 TATTTTTA-TCATCATAAAAATATATAATTTAATTATGATATTTTAAAAAAAATTCTAACACCAC
1 TATTTTTACT-ATCATAAAAATATATAATTTAATTACAATATTTTAAAAAAAATTCTAACACCAC
* * *
119422163 GAAGTTAATATAATCCAACCTAATAATGTTTTACACGCCTGAGAAAAAAAGAACATCAAAATTGA
65 GAACTTAATATAATCCAACCTAATAATATTTTACACGCCTGAGAAAAAAAGAACATCAAAATTAA
*
119422228 AGGAATT
130 AAGAATT
119422235 ATTTGACAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
137 14 0.12
138 47 0.40
139 57 0.48
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (139 bp):
TATTTTTACTATCATAAAAATATATAATTTAATTACAATATTTTAAAAAAAATTCTAACACCACG
AACTTAATATAATCCAACCTAATAATATTTTACACGCCTGAGAAAAAAAGAACATCAAAATTAAA
AGAATTTTT
Found at i:119426032 original size:18 final size:17
Alignment explanation
Indices: 119426007--119426040 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
119425997 AGCAAGAAGC
*
119426007 AAGGAGAAGAAGAGAAA
1 AAGGAGAAAAAGAGAAA
119426024 AAGGAAGAAAAAGAGAA
1 AAGG-AGAAAAAGAGAA
119426041 GGAGAGGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AAGGAGAAAAAGAGAAA
Found at i:119428249 original size:13 final size:13
Alignment explanation
Indices: 119428231--119428256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119428221 GAGGTAATAT
119428231 GGTAAATGGGCAA
1 GGTAAATGGGCAA
119428244 GGTAAATGGGCAA
1 GGTAAATGGGCAA
119428257 CTAATGGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.38, T:0.15
Consensus pattern (13 bp):
GGTAAATGGGCAA
Found at i:119429103 original size:25 final size:25
Alignment explanation
Indices: 119429065--119429124 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
119429055 ATTTTATATT
*
119429065 TATATATTACATATATAAAT-AATTATA
1 TATAT-TTA-ATATAAAAATAAATTA-A
*
119429092 TTTATTTAATATAAAAATAAATTAA
1 TATATTTAATATAAAAATAAATTAA
119429117 TATATTTA
1 TATATTTA
119429125 TTTTTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 17 0.59
26 8 0.28
27 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TATATTTAATATAAAAATAAATTAA
Found at i:119436775 original size:30 final size:30
Alignment explanation
Indices: 119436741--119436797 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
119436731 TTTAGACTTA
119436741 AATAA-AATTTTCAAAAAGTTTTAAGGGCTT
1 AATAATAATTTTC-AAAAGTTTTAAGGGCTT
* * *
119436771 AATAATAGTTTTCTAAATTTTTAAGGG
1 AATAATAATTTTCAAAAGTTTTAAGGG
119436798 TATGCAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 17 0.74
31 6 0.26
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (30 bp):
AATAATAATTTTCAAAAGTTTTAAGGGCTT
Found at i:119442928 original size:22 final size:22
Alignment explanation
Indices: 119442902--119442944 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
119442892 CAAATGATAG
*
119442902 TAAAACAACAATAAAACAATAA
1 TAAAACAACAACAAAACAATAA
**
119442924 TAAAATGACAACAAAACAATA
1 TAAAACAACAACAAAACAATA
119442945 TATGAGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.70, C:0.14, G:0.02, T:0.14
Consensus pattern (22 bp):
TAAAACAACAACAAAACAATAA
Found at i:119443371 original size:27 final size:26
Alignment explanation
Indices: 119443328--119443379 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
119443318 AAGTTCGTAT
119443328 GATTTTATATTCAAATTAGATCTTTCC
1 GATTTTATATTCAAATTAG-TCTTTCC
*
119443355 GATTTCTATA-TCCAATTAGTCTTTC
1 GATTT-TATATTCAAATTAGTCTTTC
119443380 AGAAAAGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 13 0.57
28 4 0.17
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.48
Consensus pattern (26 bp):
GATTTTATATTCAAATTAGTCTTTCC
Found at i:119444893 original size:7 final size:7
Alignment explanation
Indices: 119444881--119444907 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
119444871 ACAAATTTAC
119444881 TAAATAT
1 TAAATAT
119444888 TAAATAT
1 TAAATAT
119444895 TAAATAT
1 TAAATAT
119444902 TAAATA
1 TAAATA
119444908 AAAATATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TAAATAT
Found at i:119444914 original size:20 final size:19
Alignment explanation
Indices: 119444889--119444932 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
119444879 ACTAAATATT
*
119444889 AAATATTAAATATTAAATAA
1 AAATATCAAATATTAAA-AA
* *
119444909 AAATATCATATTTTAAAAA
1 AAATATCAAATATTAAAAA
119444928 AAATA
1 AAATA
119444933 ACCATTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATATCAAATATTAAAAA
Found at i:119453759 original size:107 final size:108
Alignment explanation
Indices: 119453636--119453851 Score: 407
Period size: 107 Copynumber: 2.0 Consensus size: 108
119453626 TAAACAAAAA
119453636 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
119453701 AATTGTATTAAAATTTTTGTTAATTACTCT-ATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
* *
119453743 ATTAGTTTAACAAAACAATGATATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
119453808 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
119453851 A
1 A
119453852 CGTGTTTTTT
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 93 0.88
108 13 0.12
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (108 bp):
ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCAAACAA
AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
Found at i:119460160 original size:85 final size:79
Alignment explanation
Indices: 119460009--119460164 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 79
119459999 ATTTAATCCA
*
119460009 TTATAATCTCATGATGAAAAATATTATTTATATATATATATATTATGATGGAATTATTGTAATGG
1 TTATAATCTCATGATGAAAAATATTATTTATATATATATATATTATGATGGAACTATTGTAATGG
119460074 CTGCTCATTGATTT
66 CTGCTCATTGATTT
** * * *
119460088 TTATAATCTCATGATGTAAATGTTTTATATATATATATATATATTATAATATGATGGAACTGTTT
1 TTATAATCTCATGATG-AAAAATATTAT-T-TATATATATATA-TAT--TATGATGGAACTATTG
119460153 TAATGGCTGCTC
60 TAATGGCTGCTC
119460165 TTTGGTTTGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 16 0.25
80 8 0.12
81 1 0.02
82 12 0.18
83 3 0.05
85 25 0.38
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.46
Consensus pattern (79 bp):
TTATAATCTCATGATGAAAAATATTATTTATATATATATATATTATGATGGAACTATTGTAATGG
CTGCTCATTGATTT
Found at i:119462908 original size:15 final size:16
Alignment explanation
Indices: 119462888--119462926 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
119462878 ATATTTAATT
119462888 ATTTAATTAAATA-TA
1 ATTTAATTAAATATTA
119462903 ATTTAATTAAATATTA
1 ATTTAATTAAATATTA
*
119462919 ATTCAATT
1 ATTTAATT
119462927 TAAAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTAATTAAATATTA
Found at i:119465463 original size:12 final size:12
Alignment explanation
Indices: 119465446--119465488 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
119465436 TTTTTAATGG
119465446 TAAATAAATATT
1 TAAATAAATATT
119465458 TAAATATAATATTT
1 TAAATA-AATA-TT
*
119465472 TTAA-AAATATT
1 TAAATAAATATT
119465483 TAAATA
1 TAAATA
119465489 GGAAACATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 5 0.19
12 11 0.42
13 5 0.19
14 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATAAATATT
Found at i:119465609 original size:41 final size:41
Alignment explanation
Indices: 119465528--119465609 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 41
119465518 ACCCCTTTAC
119465528 TTTAATAATTATATTATACAAAAATAAAATAATAATTTTTT
1 TTTAATAATTATATTATACAAAAATAAAATAATAATTTTTT
*
119465569 TTTAATAATTATATTTATACAAGAATAAAATAATAATTTTT
1 TTTAATAATTATA-TTATACAAAAATAAAATAATAATTTTT
119465610 AAAGTGGAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 13 0.33
42 26 0.67
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.46
Consensus pattern (41 bp):
TTTAATAATTATATTATACAAAAATAAAATAATAATTTTTT
Found at i:119472982 original size:6 final size:6
Alignment explanation
Indices: 119472971--119473008 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
119472961 CTTCTTCTCA
*
119472971 GCTTTG GCTTTG GCTTTG GCTTTG GCTGTG GCTTTG GC
1 GCTTTG GCTTTG GCTTTG GCTTTG GCTTTG GCTTTG GC
119473009 AGGAGGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.18, G:0.37, T:0.45
Consensus pattern (6 bp):
GCTTTG
Found at i:119478407 original size:22 final size:23
Alignment explanation
Indices: 119478364--119478408 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
119478354 TACTGTATTA
**
119478364 ATTTAAAATATTATATCTTAATT
1 ATTTAAAATATTATATAATAATT
*
119478387 ATTTTAAATA-TATATAATAATT
1 ATTTAAAATATTATATAATAATT
119478409 CACTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTTAAAATATTATATAATAATT
Found at i:119479319 original size:3 final size:3
Alignment explanation
Indices: 119479311--119479348 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
119479301 TATCCAAAAA
119479311 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
119479349 GGTAATAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:119483996 original size:31 final size:31
Alignment explanation
Indices: 119483944--119484002 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
119483934 GTTGACAACA
* *
119483944 CAATGACTTAAATAAAAACTTTCGAATATTT
1 CAATAACTTAAATAAAAACTTTCAAATATTT
* *
119483975 CAATAACTTGAATGAAAACTTTCAAATA
1 CAATAACTTAAATAAAAACTTTCAAATA
119484003 ATTTAACAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (31 bp):
CAATAACTTAAATAAAAACTTTCAAATATTT
Found at i:119485622 original size:4 final size:4
Alignment explanation
Indices: 119485613--119485656 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
119485603 TTGAACCAAT
* *
119485613 AAGA AAGA AAGA AAGA AAGA AAGC AAG- AA-A AAGA AAAA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
119485657 AGGCGCCATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
3 4 0.11
4 31 0.89
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:119498438 original size:22 final size:23
Alignment explanation
Indices: 119498381--119498438 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 23
119498371 CAAAATAGTG
*
119498381 AAAAAA-AA-TAAGAAAATAGCA
1 AAAAAAGAAGTAAGAAAACAGCA
119498402 ACAAAAAGAAGAGTAA-AAAACAGCA
1 A-AAAAAG-A-AGTAAGAAAACAGCA
119498427 AAAAAAGAAGTA
1 AAAAAAGAAGTA
119498439 GTTTTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
21 1 0.03
22 9 0.29
23 1 0.03
24 7 0.23
25 10 0.32
26 3 0.10
ACGTcount: A:0.72, C:0.07, G:0.14, T:0.07
Consensus pattern (23 bp):
AAAAAAGAAGTAAGAAAACAGCA
Found at i:119500378 original size:15 final size:16
Alignment explanation
Indices: 119500359--119500404 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
119500349 TTTATAATTT
119500359 TTTATATTTTAATAAA
1 TTTATATTTTAATAAA
*
119500375 -TTATATTAT-ATAAA
1 TTTATATTTTAATAAA
119500389 TTTCAATATTTTAATA
1 TTT--ATATTTTAATA
119500405 TTTTTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.21
15 10 0.42
17 6 0.25
18 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTATATTTTAATAAA
Found at i:119504134 original size:24 final size:22
Alignment explanation
Indices: 119504107--119504171 Score: 67
Period size: 24 Copynumber: 2.8 Consensus size: 22
119504097 AAAATTTTTT
119504107 AAATAATAATTTAATATAATAATA
1 AAATAATAATTTAATATAAT--TA
* * *
119504131 AAATTATATTTTAATGATCATTA
1 AAATAATAATTTAAT-ATAATTA
119504154 AAATATATAATTTAATAT
1 AAATA-ATAATTTAATAT
119504172 TGGCATCGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
23 8 0.24
24 22 0.65
25 4 0.12
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
AAATAATAATTTAATATAATTA
Found at i:119505700 original size:22 final size:20
Alignment explanation
Indices: 119505675--119505721 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
119505665 CTAAGATTTG
119505675 TTTTTAATG-TAAAATCATGTTA
1 TTTTTAATGAT-AAAT-ATG-TA
*
119505697 TTTTAAATGATAAATATGTA
1 TTTTTAATGATAAATATGTA
119505717 TTTTT
1 TTTTT
119505722 CCCATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 6 0.27
21 3 0.14
22 12 0.55
23 1 0.05
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (20 bp):
TTTTTAATGATAAATATGTA
Found at i:119506561 original size:17 final size:19
Alignment explanation
Indices: 119506525--119506561 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
119506515 TTATAAAAAG
*
119506525 ATAAAAATATTTATATTTT
1 ATAAAAATATATATATTTT
119506544 ATAAAAATA-ATA-ATTTT
1 ATAAAAATATATATATTTT
119506561 A
1 A
119506562 CATTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAAAAATATATATATTTT
Found at i:119511032 original size:28 final size:28
Alignment explanation
Indices: 119511001--119511057 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
119510991 TGAAATCTAA
*
119511001 AAAAATAGAAA-ATTAAATTCCTAAATAT
1 AAAAATAGAAAGACTAAATT-CTAAATAT
* *
119511029 AAAAATATAAAGACTAAATTTTAAATAT
1 AAAAATAGAAAGACTAAATTCTAAATAT
119511057 A
1 A
119511058 TGAAAAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (28 bp):
AAAAATAGAAAGACTAAATTCTAAATAT
Found at i:119511300 original size:31 final size:29
Alignment explanation
Indices: 119511227--119511300 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
119511217 ACTTTAAGTT
*
119511227 ACATTTTAGTCACTTATGTTTGGAATGTT
1 ACATTTTAGTCACTTATGTTTGGAATGTA
* * *
119511256 ACGTTTTAATCACTTATGTTATCGTG-TTGTA
1 ACATTTTAGTCACTTATGTT-T-G-GAATGTA
119511287 ACATTTTAGTCACT
1 ACATTTTAGTCACT
119511301 AAGCTATTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 18 0.50
30 1 0.03
31 16 0.44
32 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTGGAATGTA
Found at i:119511898 original size:31 final size:29
Alignment explanation
Indices: 119511863--119511938 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
119511853 TTAACGACTC
* *
119511863 AGTGACTAAAATGTTACAATACTT-AAATATA
1 AGTGACTAAAATGTAAC-AT--TTCAAACATA
*
119511894 AGTGACTGAAATGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACATTTCAAACATA
*
119511923 AGTGACTAAAACGTAA
1 AGTGACTAAAATGTAA
119511939 TTTGATGTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 2 0.05
29 20 0.51
30 2 0.05
31 15 0.38
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (29 bp):
AGTGACTAAAATGTAACATTTCAAACATA
Found at i:119515711 original size:110 final size:110
Alignment explanation
Indices: 119515502--119515756 Score: 449
Period size: 110 Copynumber: 2.3 Consensus size: 110
119515492 TCTAGATAAA
* *
119515502 ATTTTGATTGGGGTTTGTTGAATGTAAGTTAATGGTTTATTATCTTATAAAAAAAATAAGTTTTA
1 ATTTTAATTGGGGTTTGTTGAATATAAGTTAATGGTTTATTATCTTAT-AAAAAAATAAGTTTTA
119515567 AGAAAGGATTATGATTCTATACTCTGTTAGTGGAATAAAAAATTAT
65 AGAAAGGATTATGATTCTATACTCTGTTAGTGGAATAAAAAATTAT
*
119515613 ATTTTAATTGGGGTTTGTTGAATATGAGTTAATGGTTTATTATCTTAGT-AAAAAATAAGTTTTA
1 ATTTTAATTGGGGTTTGTTGAATATAAGTTAATGGTTTATTATCTTA-TAAAAAAATAAGTTTTA
*
119515677 AGAAAGGATTATGATTCTATACTTTGTTAGTGGAATAAAAAATTAT
65 AGAAAGGATTATGATTCTATACTCTGTTAGTGGAATAAAAAATTAT
119515723 ATTTTAATTGGGGTTTGTTGAATATAAGTTAATG
1 ATTTTAATTGGGGTTTGTTGAATATAAGTTAATG
119515757 ATAGTTATTT
Statistics
Matches: 138, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
110 93 0.67
111 44 0.32
112 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.43
Consensus pattern (110 bp):
ATTTTAATTGGGGTTTGTTGAATATAAGTTAATGGTTTATTATCTTATAAAAAAATAAGTTTTAA
GAAAGGATTATGATTCTATACTCTGTTAGTGGAATAAAAAATTAT
Found at i:119519517 original size:22 final size:22
Alignment explanation
Indices: 119519491--119519536 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
119519481 TAACATAATG
*
119519491 ATATATATAATATATGTTTTTATT
1 ATATA-ATAATATAT-TTATTATT
*
119519515 ATATAATTATATATTTATTATT
1 ATATAATAATATATTTATTATT
119519537 TTATTTATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATATAATAATATATTTATTATT
Found at i:119519519 original size:20 final size:19
Alignment explanation
Indices: 119519494--119519535 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
119519484 CATAATGATA
* *
119519494 TATATAATATATGTTTTTAT
1 TATATAAT-TATATATTTAT
119519514 TATATAATTATATATTTAT
1 TATATAATTATATATTTAT
119519533 TAT
1 TAT
119519536 TTTATTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TATATAATTATATATTTAT
Found at i:119520663 original size:31 final size:32
Alignment explanation
Indices: 119520628--119520695 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
119520618 TTGGTATCTG
* *
119520628 AATTTGTCC-AAAAGTACCTAGTTGATACCTA
1 AATTTGTCCAAAAAGTACATAGTCGATACCTA
* *
119520659 AATTTGTCCAAAAAGTACATTGTCGGTACCTA
1 AATTTGTCCAAAAAGTACATAGTCGATACCTA
119520691 AATTT
1 AATTT
119520696 ATTAAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
AATTTGTCCAAAAAGTACATAGTCGATACCTA
Found at i:119521355 original size:18 final size:17
Alignment explanation
Indices: 119521322--119521355 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
119521312 TACCACAATG
*
119521322 TAATGTTGTTAATATTT
1 TAATGTTGTAAATATTT
119521339 TAATGTTGATAAATATT
1 TAATGTTG-TAAATATT
119521356 CAACTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (17 bp):
TAATGTTGTAAATATTT
Found at i:119527246 original size:29 final size:30
Alignment explanation
Indices: 119527200--119527264 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
119527190 TAATATAATT
* * * *
119527200 TTATATTGATATATTATATACATAAATA-A
1 TTATATTAATATAATATAAAAATAAATATA
*
119527229 TTATATTAATCTAATATAAAAATAAATATA
1 TTATATTAATATAATATAAAAATAAATATA
119527259 TT-TATT
1 TTATATT
119527265 TGTTTCTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (30 bp):
TTATATTAATATAATATAAAAATAAATATA
Found at i:119537953 original size:3 final size:3
Alignment explanation
Indices: 119537945--119537979 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
119537935 TAAATAGTGA
119537945 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
119537980 TGTTTATGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:119538486 original size:23 final size:23
Alignment explanation
Indices: 119538434--119538486 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
119538424 GCCTGTTCGT
* *
119538434 ATTAAATTTTTATATATATATAA
1 ATTAAATTTTAAAATATATATAA
* *
119538457 ATCAAATTTTAAAA-ATATAATAC
1 ATTAAATTTTAAAATATAT-ATAA
119538480 ATTAAAT
1 ATTAAAT
119538487 AGATTAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTAAATTTTAAAATATATATAA
Found at i:119542602 original size:19 final size:20
Alignment explanation
Indices: 119542580--119542630 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
119542570 AAATTATAAA
119542580 AAAAATT-AAAATAATTTTT
1 AAAAATTCAAAATAATTTTT
*
119542599 AAAAATTCAGAATAATTTTT
1 AAAAATTCAAAATAATTTTT
119542619 -AAAA-TCAAAATA
1 AAAAATTCAAAATA
119542631 TTTATAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 7 0.24
19 11 0.38
20 11 0.38
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTT
Found at i:119542612 original size:20 final size:19
Alignment explanation
Indices: 119542580--119542622 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
119542570 AAATTATAAA
119542580 AAAAATTAAAATAATTTTT
1 AAAAATTAAAATAATTTTT
*
119542599 AAAAATTCAGAATAATTTTT
1 AAAAATT-AAAATAATTTTT
119542619 AAAA
1 AAAA
119542623 TCAAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAATTAAAATAATTTTT
Found at i:119542672 original size:11 final size:11
Alignment explanation
Indices: 119542656--119542693 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
119542646 TTTATATTTT
119542656 TAAAAAAATTC
1 TAAAAAAATTC
*
119542667 T-AAAAATTTC
1 TAAAAAAATTC
*
119542677 AAAAAAAATTC
1 TAAAAAAATTC
119542688 TAAAAA
1 TAAAAA
119542694 TATATAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (11 bp):
TAAAAAAATTC
Found at i:119542702 original size:21 final size:22
Alignment explanation
Indices: 119542656--119542702 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
119542646 TTTATATTTT
*
119542656 TAAAAAAATTCTAAAAATTTCA
1 TAAAAAAATTCTAAAAATATCA
119542678 -AAAAAAATTCTAAAAATAT-A
1 TAAAAAAATTCTAAAAATATCA
119542698 TAAAA
1 TAAAA
119542703 TTAAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAAAAAATTCTAAAAATATCA
Found at i:119543777 original size:25 final size:24
Alignment explanation
Indices: 119543749--119543800 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
119543739 AAGAGAATGA
119543749 AAAATAA-AGAAAAGAAAGAAAAGTT
1 AAAATAATAGAAAAGAAA-AAAA-TT
*
119543774 AAAATAATATAAAAGAAAAAAATT
1 AAAATAATAGAAAAGAAAAAAATT
119543798 AAA
1 AAA
119543801 TTGCTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 5 0.20
25 11 0.44
26 9 0.36
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (24 bp):
AAAATAATAGAAAAGAAAAAAATT
Found at i:119556016 original size:37 final size:40
Alignment explanation
Indices: 119555964--119556041 Score: 117
Period size: 37 Copynumber: 2.0 Consensus size: 40
119555954 TTCGGAAGAT
*
119555964 TAATACCCAATTTTAACTAAAA-A-AAG-CTAAATTAAAA
1 TAATACCCAAATTTAACTAAAATATAAGACTAAATTAAAA
119556001 TAATACCCAAATTTAACTAAAATATAAGAACTAAATTAAAA
1 TAATACCCAAATTTAACTAAAATATAAG-ACTAAATTAAAA
119556042 AAGGATACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
37 21 0.58
38 1 0.03
39 3 0.08
41 11 0.31
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.27
Consensus pattern (40 bp):
TAATACCCAAATTTAACTAAAATATAAGACTAAATTAAAA
Found at i:119563681 original size:120 final size:120
Alignment explanation
Indices: 119563548--119563793 Score: 492
Period size: 120 Copynumber: 2.0 Consensus size: 120
119563538 TCTATGAGGC
119563548 TGATTAACGTTATTTAAATTATATTTCTGCTCCTATTTGTGATTTTAATTTTTTAAATGAATGTT
1 TGATTAACGTTATTTAAATTATATTTCTGCTCCTATTTGTGATTTTAATTTTTTAAATGAATGTT
119563613 TTAGATAATTGCCGATGATGAAGAAAATGGTATTATTGTAATTTATGAAAAATAA
66 TTAGATAATTGCCGATGATGAAGAAAATGGTATTATTGTAATTTATGAAAAATAA
119563668 TGATTAACGTTATTTAAATTATATTTCTGCTCCTATTTGTGATTTTAATTTTTTAAATGAATGTT
1 TGATTAACGTTATTTAAATTATATTTCTGCTCCTATTTGTGATTTTAATTTTTTAAATGAATGTT
119563733 TTAGATAATTGCCGATGATGAAGAAAATGGTATTATTGTAATTTATGAAAAATAA
66 TTAGATAATTGCCGATGATGAAGAAAATGGTATTATTGTAATTTATGAAAAATAA
119563788 TGATTA
1 TGATTA
119563794 CATAAATACC
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 126 1.00
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (120 bp):
TGATTAACGTTATTTAAATTATATTTCTGCTCCTATTTGTGATTTTAATTTTTTAAATGAATGTT
TTAGATAATTGCCGATGATGAAGAAAATGGTATTATTGTAATTTATGAAAAATAA
Found at i:119565841 original size:85 final size:84
Alignment explanation
Indices: 119565685--119565845 Score: 225
Period size: 85 Copynumber: 1.9 Consensus size: 84
119565675 TCATCACTTC
* * * * *
119565685 AAAATTTATATATATTTTTTTATTTTTAAAATGATAATATGGTATAATATTAAATTATTACATCA
1 AAAATTTATATATATTTTTTTATTTTTAAAATAATAATATGGTACAATATTAAAATATCACATAA
*
119565750 TTAAATTTTTATTCATGTA
66 TAAAATTTTTATTCATGTA
* *
119565769 AAAATTTATATATATATTTTTTAATTTTTAAAA-AATAATATGGTACAATTTTAAAATATCATAT
1 AAAATTTATATATAT-TTTTTT-ATTTTTAAAATAATAATATGGTACAATATTAAAATATCACAT
119565833 AATAAAATTTTTA
64 AATAAAATTTTTA
119565846 ATTTTTTAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 15 0.22
85 42 0.63
86 10 0.15
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (84 bp):
AAAATTTATATATATTTTTTTATTTTTAAAATAATAATATGGTACAATATTAAAATATCACATAA
TAAAATTTTTATTCATGTA
Found at i:119575260 original size:25 final size:25
Alignment explanation
Indices: 119575226--119575276 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
119575216 TTCTAGCCAA
119575226 TACCTTGTATATCTCTTATATTCTT
1 TACCTTGTATATCTCTTATATTCTT
119575251 TACCTTGTATATCTCTTATATTCTT
1 TACCTTGTATATCTCTTATATTCTT
119575276 T
1 T
119575277 CTATTTGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.57
Consensus pattern (25 bp):
TACCTTGTATATCTCTTATATTCTT
Found at i:119577915 original size:20 final size:21
Alignment explanation
Indices: 119577876--119577915 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
119577866 GTTATTTGCA
*
119577876 TTATTTCGAACAATCAGACCG
1 TTATTTAGAACAATCAGACCG
*
119577897 TTATTTAGAA-AATCGGACC
1 TTATTTAGAACAATCAGACC
119577916 AATTCGTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (21 bp):
TTATTTAGAACAATCAGACCG
Found at i:119580012 original size:11 final size:11
Alignment explanation
Indices: 119579989--119580029 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
119579979 ATTCGGTTTG
119579989 ATTAAATAAATT
1 ATTAAA-AAATT
119580001 ATTAAAAAATT
1 ATTAAAAAATT
*
119580012 A-TAAAAAAAT
1 ATTAAAAAATT
119580022 ATTAAAAA
1 ATTAAAAA
119580030 TAAAAAACGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.33
11 12 0.44
12 6 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
ATTAAAAAATT
Found at i:119580507 original size:16 final size:18
Alignment explanation
Indices: 119580483--119580519 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
119580473 AATTTTATTA
*
119580483 TTATTAATT-TAAAAT-T
1 TTATAAATTATAAAATAT
119580499 TTATAAATTATAAAATAT
1 TTATAAATTATAAAATAT
119580517 TTA
1 TTA
119580520 GATGAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTATAAATTATAAAATAT
Found at i:119581364 original size:13 final size:13
Alignment explanation
Indices: 119581309--119581374 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
119581299 TAAACTAAAC
119581309 TTTTTAAAAATAT
1 TTTTTAAAAATAT
* *
119581322 TTCTAAAAAATAT
1 TTTTTAAAAATAT
* * * *
119581335 TTTTTCATAACAC
1 TTTTTAAAAATAT
119581348 TTTTTAAAAATAT
1 TTTTTAAAAATAT
119581361 TTTTTAAAAATAT
1 TTTTTAAAAATAT
119581374 T
1 T
119581375 GCTAAACTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (13 bp):
TTTTTAAAAATAT
Found at i:119589362 original size:17 final size:16
Alignment explanation
Indices: 119589330--119589364 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
119589320 ATAAAATTAA
119589330 TAAAACATAATATTTT
1 TAAAACATAATATTTT
119589346 TAAAA-ATATATATTTT
1 TAAAACATA-ATATTTT
119589362 TAA
1 TAA
119589365 TCATGTGGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAAACATAATATTTT
Found at i:119590484 original size:27 final size:28
Alignment explanation
Indices: 119590447--119590506 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 28
119590437 ATAAAATCAA
119590447 AATTGAAAATTGGAT-AAAAAATATAAC
1 AATTGAAAATTGGATAAAAAAATATAAC
119590474 AATTGAAAATTGGATAAAAAAAATATAAC
1 AATTGAAAATTGGAT-AAAAAAATATAAC
119590503 AATT
1 AATT
119590507 TCTTAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 15 0.48
29 16 0.52
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (28 bp):
AATTGAAAATTGGATAAAAAAATATAAC
Found at i:119597513 original size:22 final size:20
Alignment explanation
Indices: 119597487--119597528 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
119597477 AGCATTTAAT
119597487 TTATTTTTAAAAATTATAAAAA
1 TTATTTTT-AAAATT-TAAAAA
119597509 TTATTTTTAAAATTTAAAAA
1 TTATTTTTAAAATTTAAAAA
119597529 GTGTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
21 6 0.30
22 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTATTTTTAAAATTTAAAAA
Found at i:119602336 original size:23 final size:23
Alignment explanation
Indices: 119602292--119602337 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
119602282 AATATAATTG
*
119602292 AAAAAAAAGTAAGAAATCATCAT
1 AAAAAAAAGTAAGAAATAATCAT
119602315 AAAAAAAAGTAAGAAGA-AATCAT
1 AAAAAAAAGTAAGAA-ATAATCAT
119602338 CATACACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.67, C:0.07, G:0.11, T:0.15
Consensus pattern (23 bp):
AAAAAAAAGTAAGAAATAATCAT
Found at i:119607080 original size:40 final size:41
Alignment explanation
Indices: 119607036--119607122 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
119607026 TCAAATACAT
119607036 TTAAAACAAATATTAAAACAAGAAACAAA-TAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
* * * * *
119607076 TTAAAACAATTCTTAAAACAATACACAAATTGAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
*
119607117 ATAAAA
1 TTAAAA
119607123 ATTAAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 25 0.62
41 15 0.38
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (41 bp):
TTAAAACAAATATTAAAACAAGAAACAAATTAAAAAATATA
Found at i:119611037 original size:30 final size:27
Alignment explanation
Indices: 119610983--119611038 Score: 67
Period size: 30 Copynumber: 2.0 Consensus size: 27
119610973 TAATAAGAGA
*
119610983 AAAAAATAAAAAATTTAAATATTTAAC
1 AAAAAATAAAAAATTTAAAAATTTAAC
*
119611010 AAAAAATAATAAACTTTATAAAAATTTAA
1 AAAAAATAA-AAA-ATT-TAAAAATTTAA
119611039 AATAATTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 9 0.38
28 3 0.12
29 2 0.08
30 10 0.42
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAAAATAAAAAATTTAAAAATTTAAC
Found at i:119611565 original size:20 final size:19
Alignment explanation
Indices: 119611534--119611571 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
119611524 TAAAAGCTAT
119611534 CTTTTTACAAAAATAACAA
1 CTTTTTACAAAAATAACAA
119611553 CTTTTTACAAAAATAACAA
1 CTTTTTACAAAAATAACAA
119611572 ATATTATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.32
Consensus pattern (19 bp):
CTTTTTACAAAAATAACAA
Found at i:119611583 original size:21 final size:19
Alignment explanation
Indices: 119611535--119611589 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
119611525 AAAAGCTATC
*
119611535 TTTTTACAAAAATAACAAC
1 TTTTTACAAAAATAACAAA
119611554 TTTTTACAAAAATAACAAA
1 TTTTTACAAAAATAACAAA
*
119611573 TATTATTACAAATATAA
1 T-TT-TTACAAAAATAA
119611590 AGGGTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 19 0.59
20 2 0.06
21 11 0.34
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTTTACAAAAATAACAAA
Found at i:119611950 original size:3 final size:3
Alignment explanation
Indices: 119611942--119611983 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
119611932 TGTTAATCAC
119611942 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
119611984 AAATCAAGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:119615085 original size:6 final size:6
Alignment explanation
Indices: 119615074--119615103 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
119615064 AGGAAATTTG
119615074 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
119615104 CGATTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:119615719 original size:26 final size:24
Alignment explanation
Indices: 119615679--119615738 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
119615669 TTATTTTATT
* * *
119615679 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
119615703 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
119615729 AAATAAATAT
1 AAATAAATAT
119615739 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:119615750 original size:22 final size:22
Alignment explanation
Indices: 119615709--119615767 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
119615699 ATAATAAATC
* *
119615709 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
119615729 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
119615751 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
119615768 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:119617908 original size:16 final size:16
Alignment explanation
Indices: 119617887--119617926 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
119617877 TTTATATGTA
*
119617887 TCGATTTAGTTTTAAT
1 TCGATTGAGTTTTAAT
119617903 TCGATTGAGTTTTAAT
1 TCGATTGAGTTTTAAT
*
119617919 TCAATTGA
1 TCGATTGA
119617927 CATCGGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (16 bp):
TCGATTGAGTTTTAAT
Found at i:119618257 original size:32 final size:32
Alignment explanation
Indices: 119618221--119618282 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
119618211 ATCTAAAATG
* *
119618221 AATCTGAATAAATT-ATTGTTCAGATTTATTTA
1 AATCT-AAGAAATTGATTGTCCAGATTTATTTA
*
119618253 AATCTAAGCAATTGATTGTCCAGATTTATT
1 AATCTAAGAAATTGATTGTCCAGATTTATT
119618283 CTATATGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (32 bp):
AATCTAAGAAATTGATTGTCCAGATTTATTTA
Found at i:119619671 original size:33 final size:33
Alignment explanation
Indices: 119619629--119619696 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
119619619 TTAAACAAAA
*
119619629 GTATGTTTATCAGGTATTTTCTCTATTTTAATT
1 GTATGTTTATCAGGTATTTTCTCCATTTTAATT
119619662 GTATGTTTATCAGGTATTTTCTCCATTTTAATT
1 GTATGTTTATCAGGTATTTTCTCCATTTTAATT
119619695 GT
1 GT
119619697 CTTCATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (33 bp):
GTATGTTTATCAGGTATTTTCTCCATTTTAATT
Found at i:119626611 original size:4 final size:4
Alignment explanation
Indices: 119626598--119626638 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
119626588 AAAACGTGGC
* *
119626598 AAAT -AAT AAAT AAAT AAAT AAGT AAAT -ACT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
119626639 AATTTCATGC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
3 5 0.16
4 26 0.84
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:119627396 original size:42 final size:42
Alignment explanation
Indices: 119627350--119627433 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
119627340 AAGGGGAAAA
119627350 ACCCTAAAAGAGAAAAACCCCCAACCTTCGCCTCTATTCGCT
1 ACCCTAAAAGAGAAAAACCCCCAACCTTCGCCTCTATTCGCT
119627392 ACCCTAAAAGAGAAAAACCCCCAACCTTCGCCTCTATTCGCT
1 ACCCTAAAAGAGAAAAACCCCCAACCTTCGCCTCTATTCGCT
119627434 TTTCTTTCGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.38, G:0.10, T:0.19
Consensus pattern (42 bp):
ACCCTAAAAGAGAAAAACCCCCAACCTTCGCCTCTATTCGCT
Found at i:119628219 original size:21 final size:22
Alignment explanation
Indices: 119628177--119628224 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 22
119628167 TTTGGGCTTC
119628177 GGGTTTGTAATTGGGTCTGTTT
1 GGGTTTGTAATTGGGTCTGTTT
119628199 GGGTTTAGTAA-TGGG-CTGTTT
1 GGGTTT-GTAATTGGGTCTGTTT
119628220 GGGTT
1 GGGTT
119628225 AGGTTTAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 11 0.44
22 10 0.40
23 4 0.16
ACGTcount: A:0.10, C:0.04, G:0.40, T:0.46
Consensus pattern (22 bp):
GGGTTTGTAATTGGGTCTGTTT
Found at i:119628671 original size:91 final size:91
Alignment explanation
Indices: 119628561--119628739 Score: 256
Period size: 91 Copynumber: 2.0 Consensus size: 91
119628551 TGATTTGCTC
* *
119628561 TACTGCTACTTCAGAGAGATAA-GATC-CGTAACTTGTAGCTTCAATTTACTCCACTACAACTTT
1 TACTGCAACTTCAGAGAGATAAGGATCAC--AACTTGTAGCTTCAATCTACTCCACTACAACTTT
119628624 AAGGAAATAAGA-TCTGCTATCTTCACCT
64 AAGGAAATAAGATTC-GCTATCTTCACCT
* * * *
119628652 TACTGCAACTTCAGGGAGATAAGGCTCACAACTTGTAGCTTCAATCTACTCCACTGCAACTTTAG
1 TACTGCAACTTCAGAGAGATAAGGATCACAACTTGTAGCTTCAATCTACTCCACTACAACTTTAA
119628717 GGAAATAAGATTCGCTATCTTCA
66 GGAAATAAGATTCGCTATCTTCA
119628740 GTCTGCTCCG
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
91 73 0.92
92 5 0.06
93 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (91 bp):
TACTGCAACTTCAGAGAGATAAGGATCACAACTTGTAGCTTCAATCTACTCCACTACAACTTTAA
GGAAATAAGATTCGCTATCTTCACCT
Found at i:119628891 original size:142 final size:142
Alignment explanation
Indices: 119628684--119629241 Score: 609
Period size: 142 Copynumber: 4.0 Consensus size: 142
119628674 GGCTCACAAC
* ** * * *
119628684 TTGTAGCTTCAATCTACTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCA-GGAAATAAGATTCGCTATCTTCAGTTTGCTCC
* * * * * *
119628749 GCTACAACTTCAGGGAGATAAAGCTGGTGGCTTTAATCTGCTCCACTGCAACTTCAGTAATATAA
65 GCTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
*
119628814 GATTCGCCATAAT
130 GATCCGCCATAAT
* * * *
119628827 TTGTAGCTTTAATCTGTTCCACTGTAACGTCAGGAAATAAGATTCGTTGTCTTTAGTTTGCTCCG
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGAAATAAGATTCGCTATCTTCAGTTTGCTCCG
* *
119628892 CTGCAACTTTAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAG
66 CTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
*
119628957 ATCCGCCAT-CT
131 ATCCGCCATAAT
* * * ** * * * * *
119628968 TCG-A--TCT-A-C---TCTACTATAACTTCAAGGAGATAAGA-TCTAC-AACTTCAATTTGCTC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTC-AGGAAATAAGATTC-GCTATCTTCAGTTTGCTC
* * * * ** * *
119629023 CACTGCTACTTCAGGGAG-TGAGGTTGGCGGCTTCAATCTGCTTCACTGCAATTTCAGGAAGATA
64 CGCTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
119629087 AGATCCGCCATAAT
129 AGATCCGCCATAAT
* * * *
119629101 TTGTAGTTTTAATCTGTTTCACTGCAACGTCAGAGAAATAAGATTCGCTGTCTTCAGTTTGCTCT
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAG-GAAATAAGATTCGCTATCTTCAGTTTGCTCC
119629166 GCTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
65 GCTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
*
119629231 GATCCACCATA
130 GATCCGCCATA
119629242 TTCGATTTAC
Statistics
Matches: 335, Mismatches: 65, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
132 50 0.15
133 42 0.13
134 11 0.03
136 3 0.01
137 2 0.01
138 3 0.01
140 3 0.01
141 21 0.06
142 123 0.37
143 77 0.23
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (142 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGAAATAAGATTCGCTATCTTCAGTTTGCTCCG
CTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
ATCCGCCATAAT
Found at i:119629187 original size:45 final size:44
Alignment explanation
Indices: 119629111--119629233 Score: 111
Period size: 44 Copynumber: 2.8 Consensus size: 44
119629101 TTGTAGTTTT
* * * * * * *
119629111 AATCTGTTTCACTGCAACGTCAGAGAAATAAGATTCGCTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GATGGCTTC
* * ** **
119629156 AGTTTGCTCTGCTGCAACTTCAGGGAGATAAGGCTGATGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGATGGCTTC
*
119629200 AATCTGCTCCACTGCAACTTCAGGAAGATAAGAT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
119629234 CCACCATATT
Statistics
Matches: 58, Mismatches: 20, Indels: 1
0.73 0.25 0.01
Matches are distributed among these distances:
44 34 0.59
45 24 0.41
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGATGGCTTC
Found at i:119629266 original size:275 final size:274
Alignment explanation
Indices: 119628777--119629315 Score: 871
Period size: 275 Copynumber: 2.0 Consensus size: 274
119628767 TAAAGCTGGT
* * * *
119628777 GGCTTTAATCTGCTCCACTGCAACTTCAGTAATATAAGATTCGCCATAATTTGTAGCTTTAATCT
1 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCT
* * * *
119628842 GTTCCACTGTAACGTCAGGAAATAAGATTCGTTGTCTTTAGTTTGCTCCGCTGCAACTTTAGGGA
66 GTTCCACTGCAACGTCAGGAAATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTCAGGGA
* *
119628907 GATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATCTTCGA
131 GATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATATTCGA
* * *
119628972 TCTACTCTACTATAACTTCAAGGAGATAAGATCTACAACTTCAATTTGCTCCACTGCTACTTCAG
196 TCTACTCCACTACAACTTCAAGGAGATAAGATCTACAACTTCAATTTGCTCAACTGCTACTTCAG
119629037 GGAGTGAGGTTGGC
261 GGAGTGAGGTTGGC
* * *
119629051 GGCTTCAATCTGCTTCACTGCAATTTCAGGAAGATAAGATCCGCCATAATTTGTAGTTTTAATCT
1 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCT
* *
119629116 GTTTCACTGCAACGTCAGAGAAATAAGATTCGCTGTCTTCAGTTTGCTCTGCTGCAACTTCAGGG
66 GTTCCACTGCAACGTCAG-GAAATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTCAGGG
*
119629181 AGATAAGGCTGATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATATTCG
130 AGATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATATTCG
* * *
119629246 ATTTACTCCACTGCAACTTCAAGGAGATAAGATCTACAACTTCAATTTGCTCAACTGCTATTTCA
195 ATCTACTCCACTACAACTTCAAGGAGATAAGATCTACAACTTCAATTTGCTCAACTGCTACTTCA
119629311 GGGAG
260 GGGAG
119629316 ATGGGATTTG
Statistics
Matches: 242, Mismatches: 22, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
274 74 0.31
275 168 0.69
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (274 bp):
GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCT
GTTCCACTGCAACGTCAGGAAATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTCAGGGA
GATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATATTCGA
TCTACTCCACTACAACTTCAAGGAGATAAGATCTACAACTTCAATTTGCTCAACTGCTACTTCAG
GGAGTGAGGTTGGC
Found at i:119629316 original size:44 final size:46
Alignment explanation
Indices: 119629196--119629317 Score: 142
Period size: 45 Copynumber: 2.7 Consensus size: 46
119629186 AGGCTGATGG
* *
119629196 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATA
1 CTTCAATTTGCTCCACTGCAACTTCAGGGAGATAAGATCCACCATA
* * * *
119629242 -TTCGATTTACTCCACTGCAACTTCAAGGAGATAAGATCTA-CA-A
1 CTTCAATTTGCTCCACTGCAACTTCAGGGAGATAAGATCCACCATA
* * *
119629285 CTTCAATTTGCTCAACTGCTATTTCAGGGAGAT
1 CTTCAATTTGCTCCACTGCAACTTCAGGGAGAT
119629318 GGGATTTGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 1 0.02
44 28 0.44
45 34 0.54
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (46 bp):
CTTCAATTTGCTCCACTGCAACTTCAGGGAGATAAGATCCACCATA
Found at i:119630783 original size:6 final size:6
Alignment explanation
Indices: 119630772--119630808 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
119630762 TTAAAAATTC
119630772 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA A
119630809 ATCTATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:119635481 original size:13 final size:14
Alignment explanation
Indices: 119635463--119635491 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
119635453 CCAAGGAACC
119635463 TTACTTG-AAAATA
1 TTACTTGAAAAATA
119635476 TTACTTGAAAAATA
1 TTACTTGAAAAATA
119635490 TT
1 TT
119635492 GGGGTTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
TTACTTGAAAAATA
Found at i:119647237 original size:18 final size:18
Alignment explanation
Indices: 119647214--119647263 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
119647204 CGTTTACGGT
*
119647214 ACTATTCACATATATAGC
1 ACTATTCACGTATATAGC
*
119647232 ACTATTCACGTATATAGT
1 ACTATTCACGTATATAGC
119647250 ACTATTCACGTATA
1 ACTATTCACGTATA
119647264 CGATACTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (18 bp):
ACTATTCACGTATATAGC
Found at i:119647270 original size:18 final size:18
Alignment explanation
Indices: 119647232--119647300 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
119647222 CATATATAGC
*
119647232 ACTATTCACGTATA-TAGT
1 ACTATTCACGTATACGA-T
119647250 ACTATTCACGTATACGAT
1 ACTATTCACGTATACGAT
* * *
119647268 ACTATTTACGAATACGGT
1 ACTATTCACGTATACGAT
*
119647286 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
119647301 AATAGTTGGG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 42 0.98
19 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (18 bp):
ACTATTCACGTATACGAT
Found at i:119647272 original size:36 final size:36
Alignment explanation
Indices: 119647232--119647300 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
119647222 CATATATAGC
* *
119647232 ACTATTCACGTATATAGTACTATTCACGTATACGAT
1 ACTATTCACGAATACAGTACTATTCACGTATACGAT
* * *
119647268 ACTATTTACGAATACGGTACTGTTCACGTATAC
1 ACTATTCACGAATACAGTACTATTCACGTATAC
119647301 AATAGTTGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (36 bp):
ACTATTCACGAATACAGTACTATTCACGTATACGAT
Found at i:119653713 original size:20 final size:20
Alignment explanation
Indices: 119653670--119653715 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
119653660 ATGATTATAA
119653670 AAAAATAATTTTAAAAAATT
1 AAAAATAATTTTAAAAAATT
*
119653690 -AAAAT-ATATTTACAAAATT
1 AAAAATAAT-TTTAAAAAATT
119653709 AAAAATA
1 AAAAATA
119653716 GAAATTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 2 0.09
19 15 0.68
20 5 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATAATTTTAAAAAATT
Found at i:119656838 original size:27 final size:26
Alignment explanation
Indices: 119656789--119656839 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
119656779 GTAAAATATT
*
119656789 AAAAAAATAAAAAATAATAATTTATA
1 AAAAAAATAAAAAATAACAATTTATA
119656815 AAAAAAATAATAAAA-AACACATTTA
1 AAAAAAATAA-AAAATAACA-ATTTA
119656840 GAATGAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (26 bp):
AAAAAAATAAAAAATAACAATTTATA
Found at i:119657362 original size:36 final size:36
Alignment explanation
Indices: 119657313--119657384 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
119657303 GATTTAATTA
* *
119657313 AATTTAAATTTAAAATTAACTTTCTAATAAAAATAG
1 AATTTAAAATTAAAATTAAATTTCTAATAAAAATAG
*
119657349 AATTTAAAATTAAAATTAAATTTTTAATAAAAATAG
1 AATTTAAAATTAAAATTAAATTTCTAATAAAAATAG
119657385 TGAAGAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (36 bp):
AATTTAAAATTAAAATTAAATTTCTAATAAAAATAG
Found at i:119657381 original size:18 final size:18
Alignment explanation
Indices: 119657308--119657382 Score: 64
Period size: 18 Copynumber: 4.2 Consensus size: 18
119657298 ATTAAGATTT
*
119657308 AATTAAATTTA-AATTTAA
1 AATTAAATTTATAA-TAAA
* *
119657326 AATTAACTTTCTAATAAA
1 AATTAAATTTATAATAAA
* *
119657344 AA-TAGAATTTAAAATTAA
1 AATTA-AATTTATAATAAA
*
119657362 AATTAAATTTTTAATAAA
1 AATTAAATTTATAATAAA
119657380 AAT
1 AAT
119657383 AGTGAAGAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
17 2 0.05
18 38 0.86
19 4 0.09
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (18 bp):
AATTAAATTTATAATAAA
Found at i:119660909 original size:46 final size:46
Alignment explanation
Indices: 119660842--119661103 Score: 398
Period size: 46 Copynumber: 5.7 Consensus size: 46
119660832 GGCAACCTGA
119660842 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
119660888 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
119660934 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
** *
119660980 GTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
119661026 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
119661072 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
119661104 TCATGTCAAA
Statistics
Matches: 200, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 200 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:119661034 original size:138 final size:130
Alignment explanation
Indices: 119660792--119661103 Score: 426
Period size: 138 Copynumber: 2.3 Consensus size: 130
119660782 AGTGTGCTCT
*
119660792 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
***
119660857 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
119660922 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG--A-GTGTAAG
** *
119660987 ACCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGAACAAGACCATGGTTGAAAGATACC
58 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
119661052 ATGGCAAC
123 ATGGCAAC
* * * * * * *
119661060 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
119661104 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
130 46 0.29
135 2 0.01
137 1 0.01
138 111 0.69
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
TGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:119662042 original size:17 final size:16
Alignment explanation
Indices: 119662017--119662066 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
119662007 TTTTTACATG
*
119662017 TCATGATACATATCATT
1 TCATTATACA-ATCATT
119662034 TCATTATACCAAT-ATT
1 TCATTATA-CAATCATT
*
119662050 TCATT-TACCATCATT
1 TCATTATACAATCATT
119662065 TC
1 TC
119662067 CATATATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 3 0.10
15 7 0.24
16 8 0.28
17 9 0.31
18 2 0.07
ACGTcount: A:0.32, C:0.22, G:0.02, T:0.44
Consensus pattern (16 bp):
TCATTATACAATCATT
Found at i:119662065 original size:15 final size:17
Alignment explanation
Indices: 119662028--119662066 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
119662018 CATGATACAT
119662028 ATCATTTCATTATACCA
1 ATCATTTCATTATACCA
119662045 AT-ATTTCATT-TACC-
1 ATCATTTCATTATACCA
119662059 ATCATTTC
1 ATCATTTC
119662067 CATATATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 2 0.10
15 9 0.43
16 8 0.38
17 2 0.10
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (17 bp):
ATCATTTCATTATACCA
Found at i:119662389 original size:34 final size:35
Alignment explanation
Indices: 119662321--119662411 Score: 130
Period size: 34 Copynumber: 2.6 Consensus size: 35
119662311 TTTCCTCATT
119662321 AAAATACCATACCTACATTTCACAACTCGGTATGG
1 AAAATACCATACCTACATTTCACAACTCGGTATGG
* * **
119662356 AAAACACCATACCTACATTTTA-TGCTCGGTATGG
1 AAAATACCATACCTACATTTCACAACTCGGTATGG
*
119662390 AAAATACCATATCTACATTTCA
1 AAAATACCATACCTACATTTCA
119662412 TAATGTGAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 29 0.59
35 20 0.41
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (35 bp):
AAAATACCATACCTACATTTCACAACTCGGTATGG
Found at i:119667331 original size:34 final size:34
Alignment explanation
Indices: 119667244--119667367 Score: 133
Period size: 34 Copynumber: 3.6 Consensus size: 34
119667234 AGTATGGACG
* * * **
119667244 ATACCATACCTACATATCATAGCTCAGTATAGGCG
1 ATACCATACCTACATTTCACAGCTCGGTATA-GAA
** * *
119667279 ACGCCTTACCTACGTTTCACAGCTCGGTATAGAA
1 ATACCATACCTACATTTCACAGCTCGGTATAGAA
119667313 ATACCATACCTACATTTCACAGCTCGGTAT-GAA
1 ATACCATACCTACATTTCACAGCTCGGTATAGAA
*
119667346 ATTACCATACCTACGTTTCACA
1 A-TACCATACCTACATTTCACA
119667368 CTTTGCCTTG
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
33 4 0.05
34 46 0.62
35 24 0.32
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (34 bp):
ATACCATACCTACATTTCACAGCTCGGTATAGAA
Found at i:119667562 original size:27 final size:27
Alignment explanation
Indices: 119667531--119667588 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
119667521 TTGTCACTTG
119667531 TCACTTTGCCATGTCTGGCACACTTTA
1 TCACTTTGCCATGTCTGGCACACTTTA
* *
119667558 TCACTTTGCCATGTTTGGCACACTTTG
1 TCACTTTGCCATGTCTGGCACACTTTA
119667585 TCAC
1 TCAC
119667589 ATTGTCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.17, C:0.29, G:0.16, T:0.38
Consensus pattern (27 bp):
TCACTTTGCCATGTCTGGCACACTTTA
Found at i:119670144 original size:70 final size:68
Alignment explanation
Indices: 119670023--119670197 Score: 212
Period size: 70 Copynumber: 2.5 Consensus size: 68
119670013 TTAAAATTAC
* *
119670023 GGGATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTGGATTATAAGAGTAT-TATCTAGTAA
1 GGGATTAAAATTAATTTTTAATGAAAATAGTGAAGAAGTGAATTATAAGAGTATCT-TCTAGTAA
119670087 ATCA-
65 AT-AT
* * * *
119670091 GGGATTAAAATTAACTTTTTTGATGAAAATAGTGAAGAAGTGAACTT-TGAGAGTATCTTTTGGT
1 GGGATTAAAATTAA--TTTTTAATGAAAATAGTGAAGAAGTGAA-TTATAAGAGTATCTTCTAGT
*
119670155 CAATAT
63 AAATAT
*
119670161 GAGATTAAAATTAATTTTTAATGAAAATAGTGAAGAA
1 GGGATTAAAATTAATTTTTAATGAAAATAGTGAAGAA
119670198 CTTGTCACTT
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
68 36 0.39
69 1 0.01
70 53 0.57
71 3 0.03
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (68 bp):
GGGATTAAAATTAATTTTTAATGAAAATAGTGAAGAAGTGAATTATAAGAGTATCTTCTAGTAAA
TAT
Found at i:119670813 original size:12 final size:12
Alignment explanation
Indices: 119670796--119670820 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119670786 TAAATTATTG
119670796 AAAATTTATAAA
1 AAAATTTATAAA
119670808 AAAATTTATAAA
1 AAAATTTATAAA
119670820 A
1 A
119670821 TCTAATTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTTATAAA
Found at i:119673041 original size:26 final size:26
Alignment explanation
Indices: 119673004--119673087 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
119672994 TGATACAAAT
* *
119673004 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
119673030 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
119673056 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
119673082 TGATAA
1 TGATAA
119673088 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:119674618 original size:25 final size:25
Alignment explanation
Indices: 119674570--119674618 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
119674560 ACAGTTTTAC
119674570 CCCTAGGAGATAAATTACCGAAATA
1 CCCTAGGAGATAAATTACCGAAATA
* *
119674595 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAGATAAATT-ACCGAAAT
119674619 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGAGATAAATTACCGAAATA
Found at i:119676316 original size:36 final size:36
Alignment explanation
Indices: 119676261--119676330 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
119676251 AATATATGAA
* * *
119676261 AAAACTAGAAAAAATCCGTATTCGACACTTACATTC
1 AAAACTAGAAAAAACCCGTATTCAACACATACATTC
119676297 AAAACTA-AAAAGAACCCGTATTCAACACATACAT
1 AAAACTAGAAAA-AACCCGTATTCAACACATACAT
119676331 ATTCCTCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 4 0.13
36 26 0.87
ACGTcount: A:0.49, C:0.23, G:0.07, T:0.21
Consensus pattern (36 bp):
AAAACTAGAAAAAACCCGTATTCAACACATACATTC
Found at i:119676789 original size:20 final size:20
Alignment explanation
Indices: 119676757--119676807 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
119676747 TAGTAGGTTT
*
119676757 AAATTAAAAAAAT-TATTAAA
1 AAATTATAAAAATCTA-TAAA
*
119676777 AATTTATAAAAATCTATAAA
1 AAATTATAAAAATCTATAAA
119676797 AAATTATAAAA
1 AAATTATAAAA
119676808 TTTGATTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATTATAAAAATCTATAAA
Found at i:119677016 original size:20 final size:21
Alignment explanation
Indices: 119676985--119677036 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
119676975 AAGAGAAAAG
* * *
119676985 AGAAAAGCAAAGGGAGAGAAA
1 AGAAAAGAAAAGGAAAAGAAA
119677006 AG-AAAGAAAAGGAAAAGAAA
1 AGAAAAGAAAAGGAAAAGAAA
119677026 AGAAAAGAAAA
1 AGAAAAGAAAA
119677037 AAAAAATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (21 bp):
AGAAAAGAAAAGGAAAAGAAA
Done.