Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 394 of 410
Found at i:119677042 original size:16 final size:16
Alignment explanation
Indices: 119677003--119677042 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
119676993 AAAGGGAGAG
* *
119677003 AAAAGAAAGAAAAGGA
1 AAAAAAAAGAAAAGAA
*
119677019 AAAGAAAAGAAAAGAA
1 AAAAAAAAGAAAAGAA
119677035 AAAAAAAA
1 AAAAAAAA
119677043 TTCTGAAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAGAA
Found at i:119677056 original size:5 final size:5
Alignment explanation
Indices: 119677001--119677040 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
119676991 GCAAAGGGAG
119677001 AGAAA AG-AA AGAAA AGGAAA AGAAA AGAAA AGAAA A-AAA A
1 AGAAA AGAAA AGAAA A-GAAA AGAAA AGAAA AGAAA AGAAA A
119677041 AATTCTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.24
5 20 0.61
6 5 0.15
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:119683154 original size:16 final size:16
Alignment explanation
Indices: 119683135--119683167 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
119683125 AAAAGTGAAG
119683135 ATTAAAAAAAAAGAGA
1 ATTAAAAAAAAAGAGA
119683151 ATTAAAAAAAAAGAGA
1 ATTAAAAAAAAAGAGA
119683167 A
1 A
119683168 AACACCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (16 bp):
ATTAAAAAAAAAGAGA
Found at i:119684185 original size:67 final size:68
Alignment explanation
Indices: 119684103--119684247 Score: 186
Period size: 68 Copynumber: 2.1 Consensus size: 68
119684093 TAAAAGATAT
* *
119684103 ATTTTATTAAGTCATATTTT-TATTTATAAAATATTTACACATATTATAA-TTTAGTGTATATAT
1 ATTTAATTAAGTCATATTTTATATATATAAAATATTTACA-ATATTATAATTTTAGTGTATATAT
119684166 AAAC
65 AAAC
* * * * * *
119684170 ATTTAATTAATTCATATTTTATATATATAAAATATTTATAGTATTGTAATTTTAGTGTTTATATT
1 ATTTAATTAAGTCATATTTTATATATATAAAATATTTACAATATTATAATTTTAGTGTATATATA
*
119684235 AAG
66 AAC
119684238 ATTTAATTAA
1 ATTTAATTAA
119684248 ATTTAAATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
67 25 0.37
68 42 0.63
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (68 bp):
ATTTAATTAAGTCATATTTTATATATATAAAATATTTACAATATTATAATTTTAGTGTATATATA
AAC
Found at i:119684287 original size:36 final size:36
Alignment explanation
Indices: 119684247--119684316 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
119684237 GATTTAATTA
* *
119684247 AATTTAAATTTAAATTTAACTTTCTAATAAAAATGG
1 AATTTAAAATTAAAGTTAACTTTCTAATAAAAATGG
* *
119684283 AATTTAAAATTAAAGTTAATTTTTTAATAAAAAT
1 AATTTAAAATTAAAGTTAACTTTCTAATAAAAAT
119684317 AGTGAAGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (36 bp):
AATTTAAAATTAAAGTTAACTTTCTAATAAAAATGG
Found at i:119684714 original size:10 final size:10
Alignment explanation
Indices: 119684699--119684758 Score: 86
Period size: 10 Copynumber: 6.0 Consensus size: 10
119684689 TAATTTTAGG
*
119684699 ATTTATTTTT
1 ATTTATCTTT
119684709 ATTTATCTTT
1 ATTTATCTTT
119684719 ATTTATCTTT
1 ATTTATCTTT
*
119684729 AATTATCTTT
1 ATTTATCTTT
119684739 ATTTAT-TTGT
1 ATTTATCTT-T
119684749 ATTTATCTTT
1 ATTTATCTTT
119684759 TAAAATTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
9 2 0.04
10 41 0.91
11 2 0.04
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:119685447 original size:13 final size:13
Alignment explanation
Indices: 119685429--119685453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119685419 CTCCATTTTA
119685429 ATTTTTGCAATTG
1 ATTTTTGCAATTG
119685442 ATTTTTGCAATT
1 ATTTTTGCAATT
119685454 TCAATTCAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.56
Consensus pattern (13 bp):
ATTTTTGCAATTG
Found at i:119685878 original size:72 final size:73
Alignment explanation
Indices: 119685793--119685930 Score: 242
Period size: 72 Copynumber: 1.9 Consensus size: 73
119685783 TATTCTCTAA
* *
119685793 TTAATGTGGGATTAAAATTAAATTTTTAATGGATTTAATG-AAGAATTATCACTTATTTATAAGG
1 TTAATGTGGGATTAAAATTAAATTTTTAATGGATATAATGAAAAAATTATCACTTATTTATAAGG
119685857 TCAATATG
66 TCAATATG
*
119685865 TTAATGTGGGATTAAAATTAAATTTTTAATGGATATAATGAAAAAATTGTCACTTATTTATAAGG
1 TTAATGTGGGATTAAAATTAAATTTTTAATGGATATAATGAAAAAATTATCACTTATTTATAAGG
119685930 T
66 T
119685931 TAATGTGAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
72 39 0.63
73 23 0.37
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.41
Consensus pattern (73 bp):
TTAATGTGGGATTAAAATTAAATTTTTAATGGATATAATGAAAAAATTATCACTTATTTATAAGG
TCAATATG
Found at i:119686227 original size:70 final size:68
Alignment explanation
Indices: 119686085--119686248 Score: 179
Period size: 70 Copynumber: 2.4 Consensus size: 68
119686075 CCTTTTAAGG
* * *
119686085 GATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTGAATTATAAAAGTATTATCTAGTAAATT
1 GATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTAAATTATAAAAGCATTATCTAGTAAATA
*
119686150 TGG
66 TGA
* * * * *
119686153 GATTAAAATTAACTTTTTAAGTGAAAATAGTGAAGAAGTAAACTT-TGAGAGCATCT-TTTAGTC
1 GATTAAAATTAA-TTTTTAA-TGAAAATAATGAAGAAGTAAA-TTATAAAAGCAT-TATCTAGTA
119686216 AATATGA
62 AATATGA
*
119686223 GATTAAAATTAATTTTTTAAAGAAAA
1 GATTAAAATTAA-TTTTTAATGAAAA
119686249 GAATTTGTCA
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
68 12 0.15
69 12 0.15
70 54 0.67
71 3 0.04
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.36
Consensus pattern (68 bp):
GATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTAAATTATAAAAGCATTATCTAGTAAATA
TGA
Found at i:119687773 original size:33 final size:35
Alignment explanation
Indices: 119687736--119687800 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 35
119687726 AGTAAATCCG
* *
119687736 AATGAGAAACTACATTA-ATT-TTAACTTAAATAA
1 AATGAAAAACTACATTATATTATTAAATTAAATAA
119687769 AATGAAAAACTACATTATATTATTAAATTAAA
1 AATGAAAAACTACATTATATTATTAAATTAAA
119687801 ACTAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 16 0.57
34 3 0.11
35 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.34
Consensus pattern (35 bp):
AATGAAAAACTACATTATATTATTAAATTAAATAA
Found at i:119687818 original size:24 final size:24
Alignment explanation
Indices: 119687774--119687828 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
119687764 AATAAAATGA
*
119687774 AAAACTACATTATATTATTAAATT
1 AAAACTACATTAAATTATTAAATT
* *
119687798 AAAACTA-ATATAAATTTTTAATTT
1 AAAACTACAT-TAAATTATTAAATT
119687822 AATAACT
1 AA-AACT
119687829 CTTAATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.08
24 20 0.77
25 4 0.15
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (24 bp):
AAAACTACATTAAATTATTAAATT
Found at i:119695530 original size:2 final size:2
Alignment explanation
Indices: 119695518--119695558 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
119695508 ATTATGTTAT
119695518 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119695559 AACAAAACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:119695647 original size:17 final size:18
Alignment explanation
Indices: 119695622--119695664 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
119695612 AAAAGCAGGG
*
119695622 GAAGGAAAGAAA-AAAAA
1 GAAGAAAAGAAACAAAAA
119695639 GAAGAAAAGAAACGAAAAA
1 GAAGAAAAGAAAC-AAAAA
*
119695658 GGAGAAA
1 GAAGAAA
119695665 TAGGGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 11 0.50
19 11 0.50
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (18 bp):
GAAGAAAAGAAACAAAAA
Found at i:119696533 original size:16 final size:16
Alignment explanation
Indices: 119696512--119696545 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
119696502 ATATATAGTT
119696512 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
119696528 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
119696544 AA
1 AA
119696546 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:119696958 original size:18 final size:18
Alignment explanation
Indices: 119696895--119696965 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
119696885 TGGAAAGATC
119696895 GACTGTTACTGAATAATTT
1 GACTGTTACTGAATAA-TT
* * *
119696914 AATTGTTACTGTAT-ATCT
1 GACTGTTACTGAATAAT-T
* *
119696932 GATTTTTACTGAATAATT
1 GACTGTTACTGAATAATT
*
119696950 GACTGTTACTGGATAA
1 GACTGTTACTGAATAA
119696966 CCGATCAATT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.02
18 27 0.66
19 13 0.32
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (18 bp):
GACTGTTACTGAATAATT
Found at i:119697005 original size:15 final size:14
Alignment explanation
Indices: 119696982--119697021 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
119696972 AATTGATTGA
119696982 TACTGAATAACTGAT
1 TACTGAATAACTG-T
*
119696997 TATTGAATAGACTGT
1 TACTGAATA-ACTGT
119697012 TACTGAATAA
1 TACTGAATAA
119697022 ATAATTGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 1 0.05
15 17 0.77
16 4 0.18
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (14 bp):
TACTGAATAACTGT
Found at i:119698043 original size:12 final size:12
Alignment explanation
Indices: 119698026--119698051 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
119698016 TAGGAAGCTG
119698026 AGAAAAAGAAGA
1 AGAAAAAGAAGA
119698038 AGAAAAAGAAGA
1 AGAAAAAGAAGA
119698050 AG
1 AG
119698052 CTCACCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAAGA
Found at i:119698358 original size:13 final size:13
Alignment explanation
Indices: 119698340--119698364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119698330 CACCCAAAGG
119698340 TAGAACAGTCAGT
1 TAGAACAGTCAGT
119698353 TAGAACAGTCAG
1 TAGAACAGTCAG
119698365 ATGATGAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (13 bp):
TAGAACAGTCAGT
Found at i:119699782 original size:21 final size:21
Alignment explanation
Indices: 119699756--119699798 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
119699746 CCAAGGATCT
119699756 AAACACAATAAAAGTATCCAC
1 AAACACAATAAAAGTATCCAC
*
119699777 AAACACAATGAAAGTATCCAC
1 AAACACAATAAAAGTATCCAC
119699798 A
1 A
119699799 TTCGCATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.56, C:0.23, G:0.07, T:0.14
Consensus pattern (21 bp):
AAACACAATAAAAGTATCCAC
Found at i:119702413 original size:26 final size:26
Alignment explanation
Indices: 119702384--119702481 Score: 187
Period size: 26 Copynumber: 3.8 Consensus size: 26
119702374 TGACACAAAT
119702384 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
119702410 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
119702436 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
119702462 TGATAATGAGTTAGGTAAAT
1 TGATAATGGGTTAGGTAAAT
119702482 CTTTTGTATT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:119703643 original size:26 final size:26
Alignment explanation
Indices: 119703605--119703740 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
119703595 TGATACAAAT
**
119703605 TGATAATAAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
119703631 TGATAATGTGTTAGGCAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
119703657 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
**
119703683 TGATAATGTATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
119703709 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
119703735 TGATAA
1 TGATAA
119703741 GAATTTCATG
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.40
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:119711967 original size:49 final size:50
Alignment explanation
Indices: 119711906--119712036 Score: 221
Period size: 49 Copynumber: 2.6 Consensus size: 50
119711896 TGATACAAAT
*
119711906 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGTTAGGTAAATGTTTCA
119711955 TGATAATGGGTTAGGTAAATGTTCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCATGATAATGGTTAGGTAAATGTTTCA
119712005 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATGGGTTAGGTAAATG-TTCATGATAA
119712037 GTTTCATGTC
Statistics
Matches: 78, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
48 9 0.12
49 34 0.44
50 25 0.32
51 10 0.13
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (50 bp):
TGATAATGGGTTAGGTAAATGTTCATGATAATGGTTAGGTAAATGTTTCA
Found at i:119711973 original size:25 final size:24
Alignment explanation
Indices: 119711906--119712036 Score: 201
Period size: 25 Copynumber: 5.2 Consensus size: 24
119711896 TGATACAAAT
119711906 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTT-CA
119711932 TGATAAT-GTTAGGTAAATGTTCA
1 TGATAATGGTTAGGTAAATGTTCA
119711955 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAAT-GGTTAGGTAAATGTTCA
119711980 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATG-TTCA
119712005 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATG-TTCA
119712031 TGATAA
1 TGATAA
119712037 GTTTCATGTC
Statistics
Matches: 101, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
23 9 0.09
24 27 0.27
25 34 0.34
26 31 0.31
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (24 bp):
TGATAATGGTTAGGTAAATGTTCA
Found at i:119717777 original size:26 final size:25
Alignment explanation
Indices: 119717702--119717789 Score: 149
Period size: 25 Copynumber: 3.5 Consensus size: 25
119717692 ATGATAAAGG
119717702 TGTTCCATGATAATGGTTAGGTAAA
1 TGTTCCATGATAATGGTTAGGTAAA
119717727 TGTTCCATGATAATGGTTAGGTAAA
1 TGTTCCATGATAATGGTTAGGTAAA
*
119717752 TGTTTCATGATAATGGGTTAGGTAAA
1 TGTTCCATGATAAT-GGTTAGGTAAA
*
119717778 TGTTTCATGATA
1 TGTTCCATGATA
119717790 GTTCTTTTGT
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
25 38 0.62
26 23 0.38
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.39
Consensus pattern (25 bp):
TGTTCCATGATAATGGTTAGGTAAA
Found at i:119719284 original size:25 final size:26
Alignment explanation
Indices: 119719256--119719307 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
119719246 TTTACAGTTT
119719256 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
119719281 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
119719307 T
1 T
119719308 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:119723498 original size:26 final size:26
Alignment explanation
Indices: 119723457--119723537 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
119723447 TGATACAAAT
119723457 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
119723482 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
119723508 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
119723534 TGAT
1 TGAT
119723538 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 7 0.13
26 47 0.87
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:119725046 original size:26 final size:26
Alignment explanation
Indices: 119725017--119725066 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
119725007 TACAGTTTTA
119725017 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
119725043 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
119725067 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:119728183 original size:21 final size:21
Alignment explanation
Indices: 119728142--119728183 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
119728132 GGATCATCAC
* *
119728142 CATTTTTAAAAAAATTCATTT
1 CATTTATAAAAAAATTAATTT
119728163 CATTTATAAAAAGAA-TAATTT
1 CATTTATAAAAA-AATTAATTT
119728184 TTTATCACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (21 bp):
CATTTATAAAAAAATTAATTT
Found at i:119730315 original size:8 final size:8
Alignment explanation
Indices: 119730302--119730354 Score: 65
Period size: 8 Copynumber: 6.6 Consensus size: 8
119730292 TTATGTTTAG
119730302 TATATTAT
1 TATATTAT
119730310 TATATTAT
1 TATATTAT
119730318 TATATTAT
1 TATATTAT
*
119730326 TATATTTT
1 TATATTAT
119730334 TA-ATTATAT
1 TATA-T-TAT
119730343 TATATTA-
1 TATATTAT
119730350 TATAT
1 TATAT
119730355 AAAAATAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 6 0.15
8 28 0.70
9 5 0.12
10 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:119730541 original size:23 final size:23
Alignment explanation
Indices: 119730515--119730559 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
119730505 TTTTTTTGAA
* *
119730515 ATATATATTTTTTATTTTTAATC
1 ATATATATATTTTAATTTTAATC
*
119730538 ATATTTATATTTTAATTTTAAT
1 ATATATATATTTTAATTTTAAT
119730560 TTTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATATATTTTAATTTTAATC
Found at i:119730630 original size:40 final size:41
Alignment explanation
Indices: 119730575--119730661 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 41
119730565 TATAATCAAT
*
119730575 TTTTATTATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
* * * *
119730616 TTTTAATATATTTTTT-ATTTGTTTCTTGTTTTAATATTTG
1 TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
119730656 TTTTAA
1 TTTTAA
119730662 ATGTATTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 26 0.63
41 15 0.37
ACGTcount: A:0.23, C:0.01, G:0.09, T:0.67
Consensus pattern (41 bp):
TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
Found at i:119732047 original size:15 final size:15
Alignment explanation
Indices: 119732024--119732078 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
119732014 TGGTATGCGA
*
119732024 TGAATTTATATTGAT
1 TGAAATTATATTGAT
*
119732039 TGAAATTATTTTGAT
1 TGAAATTATATTGAT
119732054 TGAAATTATATTGAT
1 TGAAATTATATTGAT
119732069 TG-AATTATAT
1 TGAAATTATAT
119732079 AATATATATG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
14 8 0.22
15 29 0.78
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (15 bp):
TGAAATTATATTGAT
Found at i:119732478 original size:23 final size:23
Alignment explanation
Indices: 119732452--119732512 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 23
119732442 AGGCACTTTA
119732452 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
*
119732475 TGTGTC--ATATCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
119732496 TGTGTCGT-TTT-AGGCAC
1 TGTGTCGTATTTCAGGCAC
119732513 TTTATGTGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 26 0.76
22 2 0.06
23 6 0.18
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:119732520 original size:21 final size:21
Alignment explanation
Indices: 119732440--119732524 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
119732430 GCTTTATCGA
* *
119732440 TTAGGCACTTTATGTGTCGTAT
1 TTAGGCACCTCATGTGTCGT-T
* * *
119732462 TTCAGGCACCTCGTGTGTCATA
1 TT-AGGCACCTCATGTGTCGTT
* *
119732484 TCAGGCACCTCGTGTGTCGTT
1 TTAGGCACCTCATGTGTCGTT
* *
119732505 TTAGGCACTTTATGTGTCGT
1 TTAGGCACCTCATGTGTCGT
119732525 ACTCTGATCA
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 33 0.66
22 3 0.06
23 14 0.28
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (21 bp):
TTAGGCACCTCATGTGTCGTT
Found at i:119733910 original size:24 final size:24
Alignment explanation
Indices: 119733860--119733910 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
119733850 TAAATTTAAA
119733860 TATTATTAAATAATTTTATAAAAT
1 TATTATTAAATAATTTTATAAAAT
* *
119733884 TATTAATTAATTAATTTTA-AAAGT
1 TATT-ATTAAATAATTTTATAAAAT
119733908 TAT
1 TAT
119733911 AAAAATATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
TATTATTAAATAATTTTATAAAAT
Found at i:119734227 original size:66 final size:67
Alignment explanation
Indices: 119734090--119734232 Score: 200
Period size: 66 Copynumber: 2.1 Consensus size: 67
119734080 TAAAAGATAT
*
119734090 ATTTAATTAATTCATATTTTTATTTATAAAATATTTACACATATTATAATTTAGTGTATATATAA
1 ATTTAATTAATTCATATTTTTATATATAAAATATTTACACATATTATAATTTAGTGTATATATAA
119734155 AC
66 AC
* * * * *
119734157 ATTTAATTAATTCATA-TTTTATATAT-ATATATTTATACTTATTATAATTTCAGTGTTTATATT
1 ATTTAATTAATTCATATTTTTATATATAAAATATTTACACATATTATAATTT-AGTGTATATATA
*
119734220 AAG
65 AAC
119734223 ATTTAATTAA
1 ATTTAATTAA
119734233 ATTTAAATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
65 21 0.31
66 31 0.46
67 16 0.24
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (67 bp):
ATTTAATTAATTCATATTTTTATATATAAAATATTTACACATATTATAATTTAGTGTATATATAA
AC
Found at i:119734424 original size:46 final size:46
Alignment explanation
Indices: 119734357--119734444 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
119734347 ATTCATTCAT
*
119734357 AGGGTAAGTGCAAGTATGAGAGTA-TTCTCTAGCAAATGTGAGGGTG
1 AGGGTAAGTGCAAGAATGAGAG-AGTTCTCTAGCAAATGTGAGGGTG
** * *
119734403 AGGGTAAGTGTGAGAATGAGAGAGTTCTCTAGCTAGTGTGAG
1 AGGGTAAGTGCAAGAATGAGAGAGTTCTCTAGCAAATGTGAG
119734445 AATAAAAATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 1 0.03
46 35 0.97
ACGTcount: A:0.30, C:0.08, G:0.36, T:0.26
Consensus pattern (46 bp):
AGGGTAAGTGCAAGAATGAGAGAGTTCTCTAGCAAATGTGAGGGTG
Found at i:119736773 original size:2 final size:2
Alignment explanation
Indices: 119736766--119736793 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
119736756 CTTTAAAATT
119736766 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119736794 CACATTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:119737135 original size:15 final size:16
Alignment explanation
Indices: 119737112--119737153 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
119737102 TTATGTTTTG
*
119737112 TCATGTATTTTT-GTA
1 TCATATATTTTTAGTA
*
119737127 TCATATATTTTTATTA
1 TCATATATTTTTAGTA
*
119737143 TAATATATTTT
1 TCATATATTTT
119737154 GTTAACTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (16 bp):
TCATATATTTTTAGTA
Found at i:119737971 original size:132 final size:131
Alignment explanation
Indices: 119737719--119738021 Score: 349
Period size: 132 Copynumber: 2.3 Consensus size: 131
119737709 GTGAAATAGT
*
119737719 GCCCTAACGTGTTGGGTTGCAATTTCGT-GTTTGCTCAAAATAATCGAATATCCCTTCAAAATTT
1 GCCCTAACGTGTTGGGTTGCAATTTC-TCGTTTGCTCAAAATAATAGAATATCCCTTCAAAATTT
* * * * * * *
119737783 CACTCATGCCTTTTAAAAATTCTTTAAAACGAAGGCAAAGTTTGAAATTTGGCAATTCGCGGAAT
65 CACTCAGGCCTTCTAAAAATCCTCTAAAACGAAGGCAAAGCTCGAAATTTGACAATTCG-GGAAT
*
119737848 CGC
129 CAC
* *
119737851 GCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATAGAATATCCCTTCGAAATTTT
1 GCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATAGAATATCCCTTCAAAATTTC
* * ***
119737916 ACTTAGGTCTTCTAAAAATCCTCTAAAACGAAGGCAATA-CTCGGTGTTTGACAATTCGGGAATC
66 ACTCAGGCCTTCTAAAAATCCTCTAAAACGAAGGCAA-AGCTCGAAATTTGACAATTCGGGAATC
*
119737980 AT
130 AC
** * * ** *
119737982 TACCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAA
1 GCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAA
119738022 CGATCGAATA
Statistics
Matches: 145, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
131 40 0.28
132 104 0.72
133 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (131 bp):
GCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATAGAATATCCCTTCAAAATTTC
ACTCAGGCCTTCTAAAAATCCTCTAAAACGAAGGCAAAGCTCGAAATTTGACAATTCGGGAATCA
C
Found at i:119739677 original size:70 final size:68
Alignment explanation
Indices: 119739556--119739721 Score: 217
Period size: 70 Copynumber: 2.4 Consensus size: 68
119739546 AACCGTTTAA
*
119739556 GGGATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTGAATTATAAGAGTATTATCTAGTAAA
1 GGGATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTAAATTATAAGAGTATTATCTAGTAAA
*
119739621 TTT
66 TAT
* * * *
119739624 GGGATTAAAATTAACTTTTTTAATGAAAATAGTGAAGAAGTAAACTT-TGAGAGTATTTTTTAGT
1 GGGATTAAAATTAA--TTTTTAATGAAAATAATGAAGAAGTAAA-TTATAAGAGTATTATCTAGT
*
119739688 CAATAT
63 AAATAT
*
119739694 GAGATTAAAATTAAATTTTTAATGAAAA
1 GGGATTAAAATT-AATTTTTAATGAAAA
119739722 GAATTTGTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
68 14 0.16
69 13 0.15
70 55 0.64
71 4 0.05
ACGTcount: A:0.45, C:0.02, G:0.16, T:0.37
Consensus pattern (68 bp):
GGGATTAAAATTAATTTTTAATGAAAATAATGAAGAAGTAAATTATAAGAGTATTATCTAGTAAA
TAT
Found at i:119740497 original size:17 final size:17
Alignment explanation
Indices: 119740475--119740510 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
119740465 TGACGCTAGC
119740475 ATTCAATAAATATTTAA
1 ATTCAATAAATATTTAA
119740492 ATTCAATAAATATTTAA
1 ATTCAATAAATATTTAA
119740509 AT
1 AT
119740511 ATATAATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTCAATAAATATTTAA
Found at i:119752104 original size:39 final size:39
Alignment explanation
Indices: 119752061--119752195 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
119752051 ACCAATATGG
*
119752061 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
119752100 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
119752138 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
119752179 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
119752196 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:119753735 original size:17 final size:17
Alignment explanation
Indices: 119753713--119753747 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
119753703 GAATGCTCTC
*
119753713 TGTTTCTTATTCTTCTT
1 TGTTTCTTATTATTCTT
*
119753730 TGTTTCTTTTTATTCTT
1 TGTTTCTTATTATTCTT
119753747 T
1 T
119753748 TTCTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCTTATTATTCTT
Found at i:119759999 original size:24 final size:24
Alignment explanation
Indices: 119759972--119760110 Score: 260
Period size: 24 Copynumber: 5.8 Consensus size: 24
119759962 GCTGGAATTA
119759972 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
119759996 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
119760020 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
119760044 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
119760068 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
119760092 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
119760111 ACATAATAAG
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 113 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:119760124 original size:72 final size:72
Alignment explanation
Indices: 119759971--119760132 Score: 245
Period size: 72 Copynumber: 2.2 Consensus size: 72
119759961 TGCTGGAATT
* *
119759971 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
**
119760036 CGATTTA
66 CGACATA
* * *
119760043 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
119760108 CGAACATA
66 CG-ACATA
119760116 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
119760133 CACATTCGGT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 77 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
CGACATA
Found at i:119762817 original size:39 final size:39
Alignment explanation
Indices: 119762774--119762908 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
119762764 ACCAATATGG
*
119762774 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
119762813 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
119762851 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
119762892 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
119762909 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:119764446 original size:17 final size:17
Alignment explanation
Indices: 119764424--119764458 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
119764414 GAATGCTCTC
*
119764424 TGTTTCTTATTCTTCTT
1 TGTTTCTTATTATTCTT
*
119764441 TGTTTCTTTTTATTCTT
1 TGTTTCTTATTATTCTT
119764458 T
1 T
119764459 TTCTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCTTATTATTCTT
Found at i:119764534 original size:13 final size:13
Alignment explanation
Indices: 119764494--119764527 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
119764484 ATGTATATAT
* *
119764494 ATAATATTATTTA
1 ATAATAATAGTTA
119764507 ATAATAATAGTTA
1 ATAATAATAGTTA
119764520 ATAATAAT
1 ATAATAAT
119764528 TTATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATAATAATAGTTA
Found at i:119770255 original size:14 final size:15
Alignment explanation
Indices: 119770236--119770275 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
119770226 AGGTTCCAGC
119770236 AATTAACCCAAACT-
1 AATTAACCCAAACTA
119770250 AATTAACCCAAACTA
1 AATTAACCCAAACTA
119770265 AATTTAACCCA
1 AA-TTAACCCA
119770276 TCAAACCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 14 0.58
15 2 0.08
16 8 0.33
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (15 bp):
AATTAACCCAAACTA
Found at i:119770972 original size:30 final size:30
Alignment explanation
Indices: 119770914--119771060 Score: 172
Period size: 30 Copynumber: 4.9 Consensus size: 30
119770904 TGTAATTTTT
* * *
119770914 AGAAAATTTAA-GGTTAAAATGTAATTTAA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTAA
* * *
119770943 GGAAAGTTTAAGGGTCTAAGTGAAATTTAA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTAA
*
119770973 AGAAAGTTTAGGGGTCAAAATGAAATTTAA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTAA
* * *
119771003 AGAAAGTTTAGGGGTTAAAATAAAATTTAGA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTA-A
*
119771034 A-AAATTTTAAGGGTCAAAATGAAATTT
1 AGAAAGTTTAAGGGTCAAAATGAAATTT
119771061 TTTTTATTTT
Statistics
Matches: 100, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
29 9 0.09
30 89 0.89
31 2 0.02
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.31
Consensus pattern (30 bp):
AGAAAGTTTAAGGGTCAAAATGAAATTTAA
Found at i:119771356 original size:77 final size:76
Alignment explanation
Indices: 119771228--119772179 Score: 237
Period size: 75 Copynumber: 12.3 Consensus size: 76
119771218 TTATTCTTTA
* * *
119771228 TTGAAAAACAAGAAATTGAAAATAGCTCGGGATGTGACCCGAAGTTCAACTCACCTCTCG-AATT
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAA-T
119771292 ATGAGTTGATCT
65 ATGAGTTGATCT
* * *
119771304 TTGAAAAAGCAAAAAATTGAAAATATCTCAGCTTGTGA-CCTAAGGCTT-AACTCACCTCTCGCA
1 TTGAAAAA-CAAAAAATTGAAAATAGCTCAGCATGTGACCCGAA-G-TTCAACTCACCTCTCGCA
*
119771367 ATATGAGTTGATTTTTTTTT
63 ATATGAGTTGA------TCT
* * * *** *** * *
119771387 TTGAAAAA-TAGAAATTGAAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
*
119771451 TGAGTTGATTGATTTTT
66 TGA---G-TTGA--TCT
* *** * *** ** ** **
119771468 TTGAAAAGTAGAAATTAAAAACAAAATTTGAAAAGACATCG-G-CATGTGGCCCGAGACTCAACT
1 TTGAAAA--ACAAA--AAATTGAAAA-TAGCTCAG-CAT-GTGACCCGAAGTTC-A-ACTC-A--
* *
119771531 CACCTCCCGCAATATGAGTTGATTT
54 --CCTCTCGCAATATGAGTTGATCT
** * * * * *
119771556 TTGACGAAC-AGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAA-GTTCAACTCACCTCTCGCAAT
*
119771619 ATGAGTTGATTTTT
65 ATGAGTTGA--TCT
* * * * * * *
119771633 TTGAAAGAC-AGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCCCGCAATA
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
*
119771697 TGAGTTGATTTTT
66 TGAGTTGA--TCT
* * * * * * *
119771710 TTGAAAGAC-AGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCCCGCAATA
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
*
119771774 TGAGTTGATTTT
66 TGAGTTGA-TCT
* * * * * ** * ** * *
119771786 TTTAAAAGAC-AGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTT-AACTCATTTTTTGCAA
1 TTGAAAA-ACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAG-TTCAACTCACCTCTCGCAA
*
119771847 TATGAGTTGATTTTT
64 TATGAGTTGA--TCT
* * * * * ** * *
119771862 TTGAAAGAC-AGAAATTGAAGATACCTCA--ATGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
* *
119771924 TGAATTGATTTTT
66 TGAGTTGA--TCT
* * * * * * ** * * **
119771937 TTGAAAGAC-AGAAATTAAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
*
119771999 TGAGTTGATTTTT
66 TGAGTTGA--TCT
** * * * * * * * ** * *
119772012 TTGAAAGGC-AGAAATTGAAAATACCTCAACCTGT---CTGAGGCTCAACTCATTTCTCACAATT
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
*
119772073 TGAGTTGATTT
66 TGAGTTGATCT
*** * * * * *
119772084 TTTTGAAAC-ATAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
*
119772148 TGAGTTGATTT
66 TGAGTTGATCT
* *
119772159 TTGAAAAGC-ATAAATTGAAAA
1 TTGAAAAACAAAAAATTGAAAA
119772180 AACATCAATT
Statistics
Matches: 715, Mismatches: 115, Indels: 93
0.77 0.12 0.10
Matches are distributed among these distances:
72 29 0.04
74 33 0.05
75 252 0.35
76 31 0.04
77 214 0.30
78 5 0.01
79 1 0.00
80 6 0.01
81 60 0.08
82 7 0.01
83 18 0.03
84 2 0.00
85 5 0.01
86 8 0.01
87 9 0.01
88 10 0.01
89 5 0.01
90 5 0.01
91 1 0.00
94 14 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (76 bp):
TTGAAAAACAAAAAATTGAAAATAGCTCAGCATGTGACCCGAAGTTCAACTCACCTCTCGCAATA
TGAGTTGATCT
Found at i:119771618 original size:75 final size:74
Alignment explanation
Indices: 119771495--119772179 Score: 744
Period size: 75 Copynumber: 9.1 Consensus size: 74
119771485 AAAACAAAAT
* * * * *
119771495 TTGAAAAGACATCGGCATGTGGCCCGAGACTCAACTCACCTCCCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTCAGCATGT-G-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
119771559 -ACGAACAGAAA
64 AAAG-ACAGAAA
* *
119771570 TTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGT--GCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
119771635 GAAAGACAGAAA
63 GAAAGACAGAAA
*
119771647 TTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
119771712 GAAAGACAGAAA
63 GAAAGACAGAAA
*
119771724 TTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
119771789 AAAAGACAGAAA
63 GAAAGACAGAAA
* * * * ** * *
119771801 TTGAAAATACCTCAACGTGT-CTTGAGGCTTAACTCATTTTTTGCAATATGAGTTGATTTTTTTG
1 TTGAAAATACCTCAGCATGTGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
119771865 AAAGACAGAAA
64 AAAGACAGAAA
* * *
119771876 TTGAAGATACCTCA--ATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTTT
1 TTGAAAATACCTCAGCATGTG-C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
119771939 GAAAGACAGAAA
63 GAAAGACAGAAA
* * * * **
119771951 TTAAAAATACCTCAACGTGT-CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTG
1 TTGAAAATACCTCAGCATGTGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
*
119772015 AAAGGCAGAAA
64 AAAGACAGAAA
* * * ** * *
119772026 TTGAAAATACCTCAACCTGT-CTGAGGCTCAACTCATTTCTCACAATTTGAGTTGATTTTTTTG-
1 TTGAAAATACCTCAGCATGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
*
119772089 AA-ACATAAA
65 AAGACAGAAA
119772098 TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTCAGCATGTG-CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
119772162 AAA-AGCATAAA
64 AAAGA-CAGAAA
119772173 TTGAAAA
1 TTGAAAA
119772180 AACATCAATT
Statistics
Matches: 543, Mismatches: 51, Indels: 32
0.87 0.08 0.05
Matches are distributed among these distances:
72 23 0.04
73 11 0.02
74 45 0.08
75 280 0.52
76 1 0.00
77 181 0.33
78 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (74 bp):
TTGAAAATACCTCAGCATGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AGACAGAAA
Found at i:119772247 original size:12 final size:12
Alignment explanation
Indices: 119772230--119772254 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119772220 AACTCACCTC
119772230 TCGCAATATGAG
1 TCGCAATATGAG
119772242 TCGCAATATGAG
1 TCGCAATATGAG
119772254 T
1 T
119772255 TGATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (12 bp):
TCGCAATATGAG
Found at i:119772314 original size:87 final size:87
Alignment explanation
Indices: 119772068--119772327 Score: 326
Period size: 90 Copynumber: 3.0 Consensus size: 87
119772058 TCATTTCTCA
*
119772068 CAATTTGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAAC
1 CAATTTGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAAC
*
119772133 TCACCTCTCGCAATATGAGTTG
66 TCACCTCTCGCAATATGAGTCG
* *** *** * *
119772155 -ATTTTTGAAAAGCA-TAAATTGAAAAAACATCAATTGAAAATACCTCGGCGTGTGACCTGAGGC
1 CA-ATTTGAGTTG-ATTTTTTTG---AAACATAAATTGAAAATACCTCGGCATGTGACCTGAGGC
119772218 TCAACTCACCTCTCGCAATATGAGTCG
61 TCAACTCACCTCTCGCAATATGAGTCG
* * *
119772245 CAATATGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAAT
1 CAATTTGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAAC
*
119772310 TCACCTCTAGCAATATGA
66 TCACCTCTCGCAATATGA
119772328 ATTGATTTTT
Statistics
Matches: 142, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
86 1 0.01
87 67 0.47
88 1 0.01
89 1 0.01
90 71 0.50
91 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (87 bp):
CAATTTGAGTTGATTTTTTTGAAACATAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTCG
Found at i:119772517 original size:73 final size:71
Alignment explanation
Indices: 119772361--119772495 Score: 225
Period size: 73 Copynumber: 1.9 Consensus size: 71
119772351 CGAAAAATGA
* * *
119772361 AAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
119772426 GACAGCAG
66 -A-AGCAG
119772434 AAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTT
119772496 ATTTTTTTGA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 59 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (71 bp):
AAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
AAGCAG
Found at i:119772780 original size:72 final size:73
Alignment explanation
Indices: 119772558--119772826 Score: 330
Period size: 73 Copynumber: 3.7 Consensus size: 73
119772548 TGGCCCGAGA
* * * * *
119772558 CTCAACTCATCTCTTGCAATATGAGTTGATTTTTGACGAACAGAAATTGAAAA-TACCTCAACGT
1 CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAA-TAAAAATTACCTCAACAT
* *
119772622 GCCCTGAGG
65 GTCTTGAGG
* * * * **
119772631 CTCAACTCACCTCTCGTAGTATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAACATG
1 CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAATAAAAATTACCTCAACATG
119772696 TCTTGAGG
66 TCTTGAGG
* *
119772704 CTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAATAGAAATAAAAATTACCTCAACATG
1 CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAATAAAAATTACCTCAACATG
119772768 TCTTGAGG
66 TCTTGAGG
* * *
119772776 CTCAACTCAT-TTTGCGCAATATGAGTTGAACTTTGA-AAATAGAAATAAAAA
1 CTCAACTCATCTCT-CGCAATATGAGTTGAATTTTGACAAACAGAAATAAAAA
119772827 CATCAAAATA
Statistics
Matches: 174, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
71 2 0.01
72 83 0.48
73 89 0.51
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAATAAAAATTACCTCAACATG
TCTTGAGG
Found at i:119772799 original size:145 final size:145
Alignment explanation
Indices: 119772558--119772821 Score: 336
Period size: 145 Copynumber: 1.8 Consensus size: 145
119772548 TGGCCCGAGA
* * * * *
119772558 CTCAACTCATCTCTTGCAATATGAGTTGATTTTTGACGAACAGAAATTGAAAATACCTCAACGTG
1 CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAATTAAAAATACCTCAACATG
* * **
119772623 CCCTGAGGCTCAACTCACCTCTCGTAGTATGAGTTGATTTTTGACAAACAGAAATTGAAATTACC
66 CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAACTTTGA-AAACAGAAATTGAAATTACC
119772688 TCAACATGTCTTGAGG
130 TCAACATGTCTTGAGG
* *
119772704 CTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAATAGAAA-TAAAAATTACCTCAACAT
1 CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAATTAAAAA-TACCTCAACAT
* * * * *
119772767 GTCTTGAGGCTCAACTCA-TTTTGCGCAATATGAGTTGAACTTTGAAAATAGAAAT
65 GCCCTGAGGCTCAACTCACCTCT-CGCAATATGAGTTGAACTTTGAAAACAGAAAT
119772822 AAAAACATCA
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
144 16 0.16
145 51 0.51
146 33 0.33
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (145 bp):
CTCAACTCATCTCTCGCAATATGAGTTGAATTTTGACAAACAGAAATTAAAAATACCTCAACATG
CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAACTTTGAAAACAGAAATTGAAATTACCT
CAACATGTCTTGAGG
Found at i:119774580 original size:9 final size:9
Alignment explanation
Indices: 119774566--119774603 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
119774556 ACCTCTCCAT
119774566 TTTCTTTTC
1 TTTCTTTTC
119774575 TTTCTTTTC
1 TTTCTTTTC
119774584 TTTC-TTTC
1 TTTCTTTTC
119774592 TTT-TTTTGC
1 TTTCTTTT-C
119774601 TTT
1 TTT
119774604 TGAATAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 10 0.37
9 17 0.63
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:119774603 original size:13 final size:12
Alignment explanation
Indices: 119774570--119774603 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
119774560 CTCCATTTTC
119774570 TTTTCTTTCTTT
1 TTTTCTTTCTTT
119774582 TCTTTCTTTCTTT
1 T-TTTCTTTCTTT
119774595 TTTTGCTTT
1 TTTT-CTTT
119774604 TGAATAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTTCTTTCTTT
Found at i:119775220 original size:16 final size:17
Alignment explanation
Indices: 119775184--119775221 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
119775174 TTTGATCTCA
*
119775184 CTTTTTTTGTTTTTTGT
1 CTTTTTTTATTTTTTGT
119775201 -TTTTTTTATTTTTT-T
1 CTTTTTTTATTTTTTGT
119775216 CTTTTT
1 CTTTTT
119775222 ATGACTGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 1 0.05
16 18 0.95
ACGTcount: A:0.03, C:0.05, G:0.05, T:0.87
Consensus pattern (17 bp):
CTTTTTTTATTTTTTGT
Found at i:119779599 original size:15 final size:16
Alignment explanation
Indices: 119779581--119779612 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
119779571 ATTTTTTTTA
119779581 TTTT-TTTAGACCAAT
1 TTTTGTTTAGACCAAT
119779596 TTTTGTTTAGACCAAT
1 TTTTGTTTAGACCAAT
119779612 T
1 T
119779613 ACAAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.25, C:0.12, G:0.09, T:0.53
Consensus pattern (16 bp):
TTTTGTTTAGACCAAT
Found at i:119779724 original size:35 final size:37
Alignment explanation
Indices: 119779656--119779726 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 37
119779646 AAATTACTTC
* *
119779656 AATCCAACACAAACCAATCTCAGCCCACTAACTTAAT
1 AATCCAACACAAACCAATCCCAACCCACTAACTTAAT
*
119779693 AATCCAGCAC-AACCAA-CCCAACCCACTAACTTAA
1 AATCCAACACAAACCAATCCCAACCCACTAACTTAA
119779727 CATATCACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 16 0.52
36 6 0.19
37 9 0.29
ACGTcount: A:0.44, C:0.38, G:0.03, T:0.15
Consensus pattern (37 bp):
AATCCAACACAAACCAATCCCAACCCACTAACTTAAT
Found at i:119779866 original size:4 final size:4
Alignment explanation
Indices: 119779859--119779884 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
119779849 TTCCAGCAGC
119779859 AAAG AAAG AAAG AAAG AAAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AA
119779885 GAGATCCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:119780496 original size:30 final size:30
Alignment explanation
Indices: 119780444--119780560 Score: 137
Period size: 30 Copynumber: 3.9 Consensus size: 30
119780434 TAATTTAAGG
* * * *
119780444 AAAA-TTTAAGGGTCTAAGTGAAATTCAAA
1 AAAAGTTTAGGGGTCAAAATGAAATTAAAA
*
119780473 AAAAGTTTAGGGGTCAAAATGAAATTTAAA
1 AAAAGTTTAGGGGTCAAAATGAAATTAAAA
* *
119780503 GAAAGTTTAGGGGTCAAAATAAAATTTAAAAA
1 AAAAGTTTAGGGGTCAAAATGAAA-TT-AAAA
*
119780535 AAAAGTTTAGGGGTCAAAATGCAATT
1 AAAAGTTTAGGGGTCAAAATGAAATT
119780561 TTTTTATTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
29 4 0.05
30 43 0.57
31 4 0.05
32 24 0.32
ACGTcount: A:0.49, C:0.05, G:0.20, T:0.26
Consensus pattern (30 bp):
AAAAGTTTAGGGGTCAAAATGAAATTAAAA
Found at i:119780528 original size:60 final size:62
Alignment explanation
Indices: 119780428--119780561 Score: 173
Period size: 60 Copynumber: 2.2 Consensus size: 62
119780418 ATTTAGAGTT
* * * * * *
119780428 AAAATGTAATTTAAGGAAAATTTAAGGGTCTAAGTGAAA-TT-CAAAAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAATTTAAGGGTCAAAATAAAATTTAAAAAAAAAGTTTAGGGGTC
* *
119780488 AAAATGAAATTTAAAGAAAGTTTAGGGGTCAAAATAAAATTTAAAAAAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAATTTAAGGGTCAAAATAAAATTTAAAAAAAAAGTTTAGGGGTC
*
119780550 AAAATGCAATTT
1 AAAATGAAATTT
119780562 TTTTATTTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 32 0.51
61 2 0.03
62 29 0.46
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (62 bp):
AAAATGAAATTTAAAGAAAATTTAAGGGTCAAAATAAAATTTAAAAAAAAAGTTTAGGGGTC
Found at i:119781680 original size:2 final size:2
Alignment explanation
Indices: 119781673--119781702 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
119781663 ATTTTAACAA
119781673 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119781703 TTGGTTAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119786409 original size:46 final size:46
Alignment explanation
Indices: 119786359--119786534 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
119786349 TGGTTGAGCA
*
119786359 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* * *
119786405 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-T--G
*
119786450 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
* * * *
119786498 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
119786535 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
Found at i:119786493 original size:93 final size:93
Alignment explanation
Indices: 119786356--119786527 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
119786346 GGATGGTTGA
* * *
119786356 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
119786421 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
*
119786449 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
119786514 TGAGTCCGAGTTCG
66 TGAGTCCAAGTTCG
119786528 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:119789526 original size:26 final size:26
Alignment explanation
Indices: 119789490--119789599 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
119789480 TGATACAAAT
119789490 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119789516 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119789542 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119789568 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
119789594 TGATAA
1 TGATAA
119789600 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:119791666 original size:137 final size:137
Alignment explanation
Indices: 119791384--119791659 Score: 525
Period size: 137 Copynumber: 2.0 Consensus size: 137
119791374 GAGTAGTCTC
*
119791384 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGACTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
119791449 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
119791514 ACTGTTA
131 ACTGTTA
119791521 CCCAAATGGACTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGACTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
119791586 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
119791651 ACTGTTA
131 ACTGTTA
119791658 CC
1 CC
119791660 TGAATGGGCT
Statistics
Matches: 136, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 136 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (137 bp):
CCCAAATGGACTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTATAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:119793414 original size:17 final size:17
Alignment explanation
Indices: 119793364--119793414 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
119793354 TGGAAACATG
*
119793364 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
119793381 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
119793400 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
119793415 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:119793414 original size:22 final size:21
Alignment explanation
Indices: 119793386--119793443 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
119793376 ATGCAATCTT
*
119793386 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
119793407 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
119793430 AGATTTGATTTGTA
1 AGATATGATTTGTA
119793444 GATACCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:119794618 original size:19 final size:17
Alignment explanation
Indices: 119794581--119794623 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
119794571 ATGGTATTAT
* *
119794581 CATAATTCAATTCATAA
1 CATAAATCAATTCAAAA
119794598 CATCAAATCAAGTTCAAAA
1 CAT-AAATCAA-TTCAAAA
119794617 CATAAAT
1 CATAAAT
119794624 GCACAAGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.51, C:0.19, G:0.02, T:0.28
Consensus pattern (17 bp):
CATAAATCAATTCAAAA
Found at i:119795284 original size:2 final size:2
Alignment explanation
Indices: 119795277--119795302 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
119795267 ACGCACATTC
119795277 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
119795303 TACAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119796551 original size:15 final size:16
Alignment explanation
Indices: 119796531--119796578 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
119796521 AGCTTCTCTG
119796531 TTCTTTTCTTT-CTTT
1 TTCTTTTCTTTACTTT
* *
119796546 TTCTTTTATTTCCTTT
1 TTCTTTTCTTTACTTT
* *
119796562 TTATTTACTTTACTTT
1 TTCTTTTCTTTACTTT
119796578 T
1 T
119796579 AATAATAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (16 bp):
TTCTTTTCTTTACTTT
Found at i:119797915 original size:68 final size:67
Alignment explanation
Indices: 119797775--119797919 Score: 179
Period size: 67 Copynumber: 2.1 Consensus size: 67
119797765 TAAAAGATAT
* * *
119797775 ATTTTATTAAGTCATATTTTTATTTATAAACTATTTACAGATATTATAATTTAGTTTATATATAA
1 ATTTAATTAAGTCATATTTTTATATATAAAATATTTACAGATATTATAATTTAGTTTATATATAA
119797840 AC
66 AC
* *
119797842 ATTTAATTAATTCATATTTTATATATATAAAATATTTATAG-TATTATAATTTCAATGTTTATAT
1 ATTTAATTAAGTCATATTTT-TATATATAAAATATTTACAGATATTATAATTT--A-GTTTATAT
*
119797906 -T-AAG
62 ATAAAC
119797910 ATTTAATTAA
1 ATTTAATTAA
119797920 ATTTAAATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
67 29 0.43
68 29 0.43
69 2 0.03
70 8 0.12
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (67 bp):
ATTTAATTAAGTCATATTTTTATATATAAAATATTTACAGATATTATAATTTAGTTTATATATAA
AC
Found at i:119797959 original size:36 final size:36
Alignment explanation
Indices: 119797919--119797990 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
119797909 GATTTAATTA
* *
119797919 AATTTAAATTTAAATTTAACTTTCTAATAAAAATAG
1 AATTTAAAATTAAAGTTAACTTTCTAATAAAAATAG
* *
119797955 AATTTAAAATTAAAGTTAATTTTTTAATAAAAATAG
1 AATTTAAAATTAAAGTTAACTTTCTAATAAAAATAG
119797991 TGAAGAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (36 bp):
AATTTAAAATTAAAGTTAACTTTCTAATAAAAATAG
Found at i:119798052 original size:38 final size:38
Alignment explanation
Indices: 119798004--119798079 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
119797994 AGAAATTGAC
119798004 ATTTATTTATATAGTAAAATAATAAAAAAATGAACATT
1 ATTTATTTATATAGTAAAATAATAAAAAAATGAACATT
119798042 ATTTATTTATATAGTAAAATAATAAAAAAATGAACATT
1 ATTTATTTATATAGTAAAATAATAAAAAAATGAACATT
119798080 CATTCATAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (38 bp):
ATTTATTTATATAGTAAAATAATAAAAAAATGAACATT
Found at i:119798094 original size:35 final size:36
Alignment explanation
Indices: 119798016--119798094 Score: 97
Period size: 38 Copynumber: 2.2 Consensus size: 36
119798006 TTATTTATAT
* * *
119798016 AGTAAAATAATAAAAAAATGAACATTATTTATTTATAT
1 AGTAAAATAATAAAAAAATGAAC--TATTCATTCATAG
119798054 AGTAAAATAATAAAAAAATGAAC-ATTCATTCATAG
1 AGTAAAATAATAAAAAAATGAACTATTCATTCATAG
*
119798089 GGTAAA
1 AGTAAA
119798095 TGCAAGTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 14 0.38
38 23 0.62
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.30
Consensus pattern (36 bp):
AGTAAAATAATAAAAAAATGAACTATTCATTCATAG
Found at i:119798395 original size:72 final size:73
Alignment explanation
Indices: 119798308--119798445 Score: 242
Period size: 72 Copynumber: 1.9 Consensus size: 73
119798298 TATTCTCTAA
*
119798308 TTAATGTGAGATTAAAATTAACTTTTTAATGGATATAATG-AAGAATTATCACTTATTTATAAGG
1 TTAATGTGAGATTAAAATTAACTTTTTAATGGATATAATGAAAAAATTATCACTTATTTATAAGG
119798372 TCAATATG
66 TCAATATG
* *
119798380 TTAATGTGAGGTTAAAATTAACTTTTTAATGGATATAATGAAAAAATTGTCACTTATTTATAAGG
1 TTAATGTGAGATTAAAATTAACTTTTTAATGGATATAATGAAAAAATTATCACTTATTTATAAGG
119798445 T
66 T
119798446 TAATGTAAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
72 39 0.63
73 23 0.37
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.41
Consensus pattern (73 bp):
TTAATGTGAGATTAAAATTAACTTTTTAATGGATATAATGAAAAAATTATCACTTATTTATAAGG
TCAATATG
Found at i:119798720 original size:71 final size:69
Alignment explanation
Indices: 119798598--119798764 Score: 214
Period size: 71 Copynumber: 2.4 Consensus size: 69
119798588 AACCTTTTAA
*
119798598 GGGATTAAAATTAA-TTTTTAATGAAAATAATGAAGAAGTGAATTATAAGAGTAT-TATCTAGTA
1 GGGATTAAAATTAATTTTTTAATGAAAATAATGAAGAAGTAAATTATAAGAGTATCT-TCTAGTA
*
119798661 AATTT
65 AATAT
* * *
119798666 GGGATTAAAATTAACTTTTTTTAATGAAAATAGTGAAGAAGTAAACTT-TGAGAGTATCTTTTAG
1 GGGATTAAAATTAA--TTTTTTAATGAAAATAATGAAGAAGTAAA-TTATAAGAGTATCTTCTAG
*
119798730 TCAATAT
63 TAAATAT
*
119798737 GAGATTAAAATTAATTTTTTAATGAAAA
1 GGGATTAAAATTAATTTTTTAATGAAAA
119798765 GAATTTGTCA
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
68 14 0.16
69 14 0.16
71 56 0.64
72 3 0.03
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.38
Consensus pattern (69 bp):
GGGATTAAAATTAATTTTTTAATGAAAATAATGAAGAAGTAAATTATAAGAGTATCTTCTAGTAA
ATAT
Found at i:119799825 original size:13 final size:13
Alignment explanation
Indices: 119799801--119799877 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
119799791 CACTTAAAAT
* *
119799801 TTTTCTAAAGTAC
1 TTTTCAAAAGCAC
* *
119799814 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
*
119799827 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
119799840 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
119799853 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
119799866 TTTTCAAAAGCA
1 TTTTCAAAAGCA
119799878 ATGAAAAACT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 56 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:119804587 original size:26 final size:26
Alignment explanation
Indices: 119804552--119804713 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
119804542 TGATACAAAT
*
119804552 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATAGGTTAGGTAAATGTTCCA
119804578 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
119804604 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
119804630 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
119804656 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
119804682 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
119804708 TGATAA
1 TGATAA
119804714 GAATTTCATG
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:119804642 original size:78 final size:78
Alignment explanation
Indices: 119804552--119804713 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
119804542 TGATACAAAT
*
119804552 TGATAATAGGTTAGGTAAATGTTCCTTGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
119804617 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* *
119804630 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
119804695 GGTAAATGTTTCA
66 GGTAAATGTTTCA
119804708 TGATAA
1 TGATAA
119804714 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
GGTAAATGTTTCA
Found at i:119807749 original size:7 final size:7
Alignment explanation
Indices: 119807733--119807763 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
119807723 TCACGGTGAC
*
119807733 AAGAGAA
1 AAGAGGA
119807740 AAGAGGA
1 AAGAGGA
119807747 AAGAGGA
1 AAGAGGA
119807754 AAGAGGA
1 AAGAGGA
119807761 AAG
1 AAG
119807764 TTTTTGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (7 bp):
AAGAGGA
Found at i:119808402 original size:23 final size:23
Alignment explanation
Indices: 119808376--119808438 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
119808366 TAAAAAATGC
119808376 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAATTT
*
119808399 TAATA-AATATAAAT-TAAAAATTT
1 TAATACAAT-TACATAT-AAAATTT
*
119808422 TAATACAATTTCATATA
1 TAATACAATTACATATA
119808439 TAGGATATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (23 bp):
TAATACAATTACATATAAAATTT
Found at i:119809615 original size:7 final size:7
Alignment explanation
Indices: 119809603--119809710 Score: 67
Period size: 7 Copynumber: 15.1 Consensus size: 7
119809593 ACTAATTAAT
119809603 CTAAACC
1 CTAAACC
119809610 CTAAACC
1 CTAAACC
*
119809617 TCTTAACCC
1 -C-TAAACC
*
119809626 CT-ATCC
1 CTAAACC
*
119809632 CATAAACA
1 C-TAAACC
*
119809640 CTAAACT
1 CTAAACC
119809647 CTAAACC
1 CTAAACC
*
119809654 CTTACACC
1 C-TAAACC
* *
119809662 TTAAACT
1 CTAAACC
119809669 CT-AACC
1 CTAAACC
*
119809675 CTAACCC
1 CTAAACC
119809682 CTAAACC
1 CTAAACC
*
119809689 CTAAATC
1 CTAAACC
* *
119809696 ATAATCC
1 CTAAACC
119809703 CTAAACC
1 CTAAACC
119809710 C
1 C
119809711 ATAATTCATC
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
6 9 0.12
7 51 0.68
8 10 0.13
9 5 0.07
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:119809779 original size:21 final size:21
Alignment explanation
Indices: 119809753--119809837 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
119809743 ACTCCTAAAC
*
119809753 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
119809774 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
* *
119809799 CTTAAACCCTAAATCATATAT
1 CTTAAACCATAAACCATATAT
*
119809820 CTTAAATCATAAACCATA
1 CTTAAACCATAAACCATA
119809838 AACTATAATG
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
21 30 0.60
22 2 0.04
24 3 0.06
25 15 0.30
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:119809790 original size:46 final size:46
Alignment explanation
Indices: 119809737--119809830 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
119809727 CTTCAAATAC
*
119809737 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
* *
119809783 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAATCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
119809829 TA
1 TA
119809831 AACCATAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:119810070 original size:41 final size:41
Alignment explanation
Indices: 119810003--119810384 Score: 463
Period size: 41 Copynumber: 9.4 Consensus size: 41
119809993 TTATATGACT
119810003 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
* * *
119810044 TTTAACGGCATTTTTACAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
** * *
119810085 TTTAGCGGCGTTTTGCCATAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
**
119810126 TTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
* * ** *
119810167 TTTAGCGGAGTTTTTCCGTAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
*
119810208 TTTAGCGGCG-TTTTACCAAAATCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTA-CAAAAGCGCCGCTAATGCTCTGGTC
* *
119810249 TTTAGCGGCG-TTTTACCAAAATCGCCGCTAATGCTC-AGTC
1 TTTAGCGGCGTTTTTA-CAAAAGCGCCGCTAATGCTCTGGTC
* *
119810289 TTTAGCGGCG-TTTTACCAAAAGCGCTGCTAATGCTC-AGTC
1 TTTAGCGGCGTTTTTA-CAAAAGCGCCGCTAATGCTCTGGTC
** * *
119810329 TTTAGCGGCGTTTTCTACTAAAA-CGCCGCTGTTGCTTTGTTC
1 TTTAGCGGCGTTTT-TAC-AAAAGCGCCGCTAATGCTCTGGTC
119810371 -TTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
119810385 TATAAAATGC
Statistics
Matches: 306, Mismatches: 30, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
40 56 0.18
41 242 0.79
42 8 0.03
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTACAAAAGCGCCGCTAATGCTCTGGTC
Found at i:119811110 original size:2 final size:2
Alignment explanation
Indices: 119811103--119811128 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
119811093 TAAATTGTTG
119811103 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
119811129 TTTAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119815188 original size:21 final size:20
Alignment explanation
Indices: 119815164--119815212 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
119815154 ATCATGATTA
119815164 TAAAAAATAATTTTAAAAAAT
1 TAAAAAATAA-TTTAAAAAAT
* *
119815185 TAAAATAT-ATTTATAAAAT
1 TAAAAAATAATTTAAAAAAT
*
119815204 TTAAAAATA
1 TAAAAAATA
119815213 CAAATTACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 15 0.65
20 1 0.04
21 7 0.30
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAAAATAATTTAAAAAAT
Found at i:119823263 original size:42 final size:39
Alignment explanation
Indices: 119823216--119823311 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
119823206 AAATAATAAA
* * *
119823216 AAAATTAAAAAATATTATTCTTACATATTAATAATTTCTTTT
1 AAAATTAAAAAACATTA-T-TT-CAAATTAATAACTTCTTTT
**
119823258 AAAATTTTAAAACATTATTTCAAATTAATAACTTCTTTT
1 AAAATTAAAAAACATTATTTCAAATTAATAACTTCTTTT
**
119823297 AAAATTTTAAAACAT
1 AAAATTAAAAAACAT
119823312 AGTTTGTAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 32 0.65
40 2 0.04
41 1 0.02
42 14 0.29
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (39 bp):
AAAATTAAAAAACATTATTTCAAATTAATAACTTCTTTT
Found at i:119825392 original size:28 final size:27
Alignment explanation
Indices: 119825344--119825397 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
119825334 TGAGTGTAAA
119825344 ATTATAAAAAAATTCAAAAATTAAAAAG
1 ATTATAAAAAAATTCAAAAA-TAAAAAG
119825372 ATTATAAAAAAGATTC-AAAATAAAAA
1 ATTATAAAAAA-ATTCAAAAATAAAAA
119825398 TAAAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 6 0.24
28 15 0.60
29 4 0.16
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (27 bp):
ATTATAAAAAAATTCAAAAATAAAAAG
Found at i:119839935 original size:12 final size:12
Alignment explanation
Indices: 119839915--119839957 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
119839905 AGTAAACAAT
119839915 AATACTATATATA
1 AATA-TATATATA
119839928 AATATATATATA
1 AATATATATATA
* * *
119839940 TATATACATAAA
1 AATATATATATA
119839952 AATATA
1 AATATA
119839958 CACTAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATATATA
Found at i:119840193 original size:3 final size:3
Alignment explanation
Indices: 119840180--119840265 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
119840170 GAGGGCATAT
119840180 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
119840224 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
119840266 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:119840204 original size:12 final size:12
Alignment explanation
Indices: 119840180--119840262 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
119840170 GAGGGCATAT
119840180 ATAATAT-AATA
1 ATAATATAAATA
119840191 ATAATATAAATA
1 ATAATATAAATA
119840203 ATAATATATACATGA
1 ATAATATA-A-AT-A
119840218 GA-AATA-ATAATA
1 -ATAATATA-AATA
119840230 ATAATATAAATA
1 ATAATATAAATA
* *
119840242 ATAGTAAAAATA
1 ATAATATAAATA
*
119840254 ATAAAATAA
1 ATAATATAA
119840263 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:119840224 original size:21 final size:18
Alignment explanation
Indices: 119840185--119840265 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
119840175 CATATATAAT
*
119840185 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
119840203 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
119840224 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
119840242 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
119840259 ATAATAA
1 ATAATAA
119840266 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:119840253 original size:27 final size:27
Alignment explanation
Indices: 119840180--119840266 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
119840170 GAGGGCATAT
* *
119840180 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
119840206 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
119840230 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
119840257 A-AATAATAAA
1 ATAAT-ATAAA
119840267 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:119840644 original size:22 final size:21
Alignment explanation
Indices: 119840603--119840649 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
119840593 CTTCTTTCCA
*
119840603 AAAAAACAAAAAAACACCTCT
1 AAAAAACAAAAAAACACCTCC
*
119840624 AAAAAACAAAAAAACCTCCTCC
1 AAAAAACAAAAAAA-CACCTCC
119840646 AAAA
1 AAAA
119840650 CAAAGAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.66, C:0.26, G:0.00, T:0.09
Consensus pattern (21 bp):
AAAAAACAAAAAAACACCTCC
Found at i:119840649 original size:20 final size:22
Alignment explanation
Indices: 119840626--119840672 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
119840616 ACACCTCTAA
119840626 AAAACAAA-AA-AACCTCCTCC
1 AAAACAAAGAACAACCTCCTCC
*
119840646 AAAACAAAGAACTATCCTCCTCC
1 AAAACAAAGAAC-AACCTCCTCC
119840669 AAAA
1 AAAA
119840673 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
23 13 0.57
ACGTcount: A:0.53, C:0.32, G:0.02, T:0.13
Consensus pattern (22 bp):
AAAACAAAGAACAACCTCCTCC
Found at i:119840649 original size:21 final size:22
Alignment explanation
Indices: 119840603--119840700 Score: 76
Period size: 22 Copynumber: 4.5 Consensus size: 22
119840593 CTTCTTTCCA
*
119840603 AAAAAACAAAAAAA-CACCTCT
1 AAAAAACAAAAAAACCACCTCC
*
119840624 AAAAAACAAAAAAACCTCCTCC
1 AAAAAACAAAAAAACCACCTCC
* *
119840646 --AAAACAAAGAACTATCCTCCTCC
1 AAAAAACAAA-AA--AACCACCTCC
* * *
119840669 AAAAAACCAAAAACCCACCCCC
1 AAAAAACAAAAAAACCACCTCC
*
119840691 TAAAAACAAA
1 AAAAAACAAA
119840701 GTCTTGAATG
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
20 8 0.13
21 16 0.26
22 20 0.32
23 9 0.15
24 2 0.03
25 7 0.11
ACGTcount: A:0.58, C:0.32, G:0.01, T:0.09
Consensus pattern (22 bp):
AAAAAACAAAAAAACCACCTCC
Found at i:119841204 original size:44 final size:44
Alignment explanation
Indices: 119841155--119841521 Score: 244
Period size: 44 Copynumber: 8.3 Consensus size: 44
119841145 TGCTTCACTG
* * *
119841155 TAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTA
*** * * ** * *
119841199 TAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTACTTCACTG
1 TAAGCACAGGGATGTCAAAT-CTGCTGTTTTC-AACTTGTTCCCTA
* * * * * * *
119841243 TAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTT
1 TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACT-TGTTCCCTA
* *
119841287 TAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTA
* *** * * * *
119841331 TAAGCACAGGGATG-C-CATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGTCAAAT-CTGCTGT-TTTCAACTTG-TTCCCTA
* * * * * **
119841375 TAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCATTCCCTA
1 TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACT-TGTTCCCTA
* *
119841419 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTA
* * *
119841463 TAAGCACAGGGATGCACAAATCTGATGTTTTCAACTTGTTCCTTA
1 TAAGCACAGGGATG-TCAAATCTGCTGTTTTCAACTTGTTCCCTA
119841508 TAAGCACAGGGATG
1 TAAGCACAGGGATG
119841522 CCATGCTAAA
Statistics
Matches: 248, Mismatches: 60, Indels: 29
0.74 0.18 0.09
Matches are distributed among these distances:
42 4 0.02
43 14 0.06
44 167 0.67
45 59 0.24
46 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TAAGCACAGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTA
Found at i:119841284 original size:88 final size:88
Alignment explanation
Indices: 119841135--119841300 Score: 244
Period size: 88 Copynumber: 1.9 Consensus size: 88
119841125 GATATCCGCT
* * * * * *
119841135 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTAT
1 ATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTCGTTCCCTAT
119841200 AAGCACAGGGATGTCATGCTGAA
66 AAGCACAGGGATGTCATGCTGAA
* *
119841223 ATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTT
1 ATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-CGTTCCCTA
119841287 TAAGCACAGGGATG
65 TAAGCACAGGGATG
119841301 CCAAATCTGT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
87 1 0.01
88 68 0.99
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (88 bp):
ATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTCGTTCCCTAT
AAGCACAGGGATGTCATGCTGAA
Found at i:119841340 original size:132 final size:132
Alignment explanation
Indices: 119841132--119841477 Score: 548
Period size: 132 Copynumber: 2.6 Consensus size: 132
119841122 GGCGATATCC
* * * * * * * * *
119841132 GCTATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCC
1 GCTATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCC
*
119841197 TATAAGCACAGGGATGTCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGA
65 TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGA
119841262 TCT
130 TCT
* *
119841265 GCTATCTTCGATCCGTTCCCTTTAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCT
1 GCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCT
* *
119841330 ATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGAT
66 ATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGAT
119841395 CT
131 CT
*
119841397 GCTATCTTCGATCCATTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCT
1 GCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCT
119841462 ATAAGCACAGGGATGC
66 ATAAGCACAGGGATGC
119841478 ACAAATCTGA
Statistics
Matches: 198, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
132 185 0.93
133 13 0.07
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
GCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCT
ATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGAT
CT
Found at i:119841536 original size:132 final size:131
Alignment explanation
Indices: 119841155--119841541 Score: 408
Period size: 132 Copynumber: 2.9 Consensus size: 131
119841145 TGCTTCACTG
* * * * * *
119841155 TAAGCACAGGAATGTCAGATTTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCT
1 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
* * * * *** *
119841220 GAAATC-TTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCGTTCC
66 GAAATCTTTC-AACTGCTTCACTATAAGCACAGGAATGCCAGA-CTAAAATCTTCGATCCATTCC
*
119841284 CTT
129 CTA
*
119841287 TAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
1 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
* * * * ***
119841352 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCCATTCCC
66 GAAATCTTTCAACTGCTTCACTATAAGCACAGGAATGCCAGA-CTAAAATCTTCGATCCATTCCC
119841417 TA
130 TA
119841419 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCACAAAT
1 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGC-C--AT
** * *
119841484 -CTGATGT-TTTCAACTTG-TTC-CTTATAAGCACAGGGATGCCATG-CTAAAATCTTGGATC
63 GCTGAAATCTTTCAAC-TGCTTCAC-TATAAGCACAGGAATGCCA-GACTAAAATCTTCGATC
119841542 TGCTTCACTG
Statistics
Matches: 226, Mismatches: 22, Indels: 14
0.86 0.08 0.05
Matches are distributed among these distances:
132 189 0.84
133 27 0.12
134 8 0.04
135 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (131 bp):
TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
GAAATCTTTCAACTGCTTCACTATAAGCACAGGAATGCCAGACTAAAATCTTCGATCCATTCCCT
A
Found at i:119841745 original size:68 final size:68
Alignment explanation
Indices: 119841636--119841825 Score: 292
Period size: 68 Copynumber: 2.8 Consensus size: 68
119841626 TCTTCTTCCA
* ** * *
119841636 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTTTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
119841701 -TT
66 CCT
* *
119841703 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
119841768 TCCT
65 TCCT
119841772 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAG
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAG
119841826 CGAAAAAGAA
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
68 110 0.99
69 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:119842022 original size:88 final size:88
Alignment explanation
Indices: 119841906--119843623 Score: 755
Period size: 88 Copynumber: 19.7 Consensus size: 88
119841896 CTATTTCCCA
* * * *
119841906 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTAG-TTAGGGGGTTAAGATT
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACT-GCTTAGGGGGTTAAGATC
119841970 TGTAAATCTTCAGCCTGTTACCCT
65 TGTAAATCTTCAGCCTGTTACCCT
* * * *
119841994 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGTC
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGA-TC
** * * * * * *
119842058 CATCATTTTTTA-TCTGTTTCCCT
65 TGTAAATCTTCAGCCTGTTACCCT
* * * *
119842081 TCTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTTCTTAGGGGTTTAAG-
1 ACTGCTTAGGGGGTTAAGATTTGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAAGA
* * *
119842144 GCTTGTAAA--TTCGGCTTGTTACCCT
63 TC-TGTAAATCTTCAGCCTGTTACCCT
*** * ** * * *
119842169 ACTGCTTA-GGGGTTAAAGCCCAT-CATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT
1 ACTGCTTAGGGGGTT-AAG-ATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
119842232 CTGTAAATCTTCAGCCTGTTACCCT
64 CTGTAAATCTTCAGCCTGTTACCCT
*** * ** * * *
119842257 ACTGCTTA-GGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGAT
1 ACTGCTTAGGGGGTT-AAG-ATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
119842320 CTGTAAATCTTCAGCCTGTTACCCT
64 CTGTAAATCTTCAGCCTGTTACCCT
** * * * *
119842345 ACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGC-
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATCT
** * * *
119842408 CCATCATCTTC-GATCTGTTTCCCT
66 GTA-AATCTTCAG-CCTGTTACCCT
* ** * * * * * *
119842432 ACTGCTTAGGGGGGTTAAGATCTT-CATCTTCGATCTGTTTCCTTACTACTTAGGGAGATAAGAT
1 ACTGCTTA-GGGGGTTAAGAT-TTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
* * *
119842496 CTG-CAA--TTCGGTCTGTTACCCT
64 CTGTAAATCTTCAGCCTGTTACCCT
* * * * * *
119842518 ACCGATTAGGGGTTTAAG-TCCCTTCGT--CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAG
1 ACTGCTTAGGGGGTTAAGAT---TT-GTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAG
119842580 ATCTGTAAATCTTCAGCCTGTTACCCT
62 ATCTGTAAATCTTCAGCCTGTTACCCT
*** * ** * *
119842607 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT
1 ACTGCTTAGGGGGTT-AAG-ATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
* ** *
119842671 CT-T-CATCTTC-GATTTGTTTCCCT
64 CTGTAAATCTTCAG-CCTGTTACCCT
* * * * ** * * * *
119842694 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCC
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGA-TC
* * *
119842758 T-T-CATCTTC-GATCTGTTTCCCT
65 TGTAAATCTTCAG-CCTGTTACCCT
*
119842780 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGGGGTTAAG-
1 ACTGCTTAGGGGGTTAAGATTTGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAAGA
* * *
119842843 GCTTGTAAAT-TT-GGCTTGTTACCCT
63 TC-TGTAAATCTTCAGCCTGTTACCCT
*** * ** * *
119842868 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT
1 ACTGCTTAGGGGGTT-AAG-ATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
* * * *
119842932 CT-T-CATCTTC-GATCTATTTCCCT
64 CTGTAAATCTTCAG-CCTGTTACCCT
* * * * ** * * *
119842955 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAG-TC-
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATCT
** ** * *
119843017 CCATCGTCTTC-GATCTGTTTCCCT
66 GTA-AATCTTCAG-CCTGTTACCCT
* *
119843041 ACTGCTTA-GGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGGAGTTAAG-
1 ACTGCTTAGGGGGTTAAGATTTGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAAGA
* * *
119843103 GCTTGTAAAT-TT-GGCTTGTTACCCT
63 TC-TGTAAATCTTCAGCCTGTTACCCT
*** * ** * *
119843128 ACTGCTTA-GGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT
1 ACTGCTTAGGGGGTT-AAG-ATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
* ** *
119843191 CT-T-CATCTTC-GATTTGTTTCCCT
64 CTGTAAATCTTCAG-CCTGTTACCCT
* * * * ** * * * *
119843214 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCC
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGA-TC
** * *
119843278 T-T-CGTCTTC-GATCTGTTTCCCT
65 TGTAAATCTTCAG-CCTGTTACCCT
* * *
119843300 ACTACTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGGAGTTAAG-
1 ACTGCTTAGGGGGTTAAGATTTGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAAGA
* * *
119843363 GCTTGTAAAT-TT-GGCTTGTTACCCT
63 TC-TGTAAATCTTCAGCCTGTTACCCT
* *** * ** * * *
119843388 ATTGCTTAGGGGGTTAAAGCCCAT-CATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGAT
1 ACTGCTTAGGGGGTT-AAG-ATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
* * *
119843452 CT-T-CATCTTC-GATCTGTTTCCCT
64 CTGTAAATCTTCAG-CCTGTTACCCT
* * * * ** * * * *
119843475 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCC
1 ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGA-TC
** * *
119843539 T-T-CGTCTTC-GATCTGTTTCCCT
65 TGTAAATCTTCAG-CCTGTTACCCT
* *
119843561 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGGGTTAAGATTTGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAAG
119843624 GCTTGTGAAT
Statistics
Matches: 1265, Mismatches: 270, Indels: 189
0.73 0.16 0.11
Matches are distributed among these distances:
84 5 0.00
85 151 0.12
86 316 0.25
87 237 0.19
88 339 0.27
89 208 0.16
90 9 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (88 bp):
ACTGCTTAGGGGGTTAAGATTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATCT
GTAAATCTTCAGCCTGTTACCCT
Found at i:119842427 original size:132 final size:133
Alignment explanation
Indices: 119841852--119843497 Score: 848
Period size: 132 Copynumber: 12.6 Consensus size: 133
119841842 AATTTCCAGC
* * * * * *
119841852 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
119841917 GGTTAAGATCTGTAAA--TTCAACCTGTTACCCTACTAG-TTAGGGGGTTAAGATTTGTAAATCT
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACT-GCTTAGGGGGTTAAG-CTTGTAAATCT
119841979 TCAGC-
129 T-AGCT
* * **** ** * *
119841984 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGT-AAATTCG-GCTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTAGG
** * * * * * * * *
119842047 GGGTTAA-AGTCCATCATTTTTTA-TCTGTTTCCCTTCTGCTTAGGGGGTTAAGATCTGTAAATC
65 GGGTTAAGA-TCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGCT-TGTAAATC
119842110 TTCAGC-
128 TT-AGCT
* * * *** ** * *
119842116 CTGTTACCCTACTTCTTAGGGGTTTAAGGCTTGT-AAATTCG-GCTTGTTACCCTACTGCTTA-G
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTAGG
* ** * * * * *
119842178 GGGTTAA-AGC-CCATCATCTT-TGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAAT
65 GGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGCT-TGTAAAT
119842240 CTTCAGC-
127 CTT-AGCT
*
119842247 CTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
119842311 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAAT-TT
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAA-GCTTGTAAATCTT
*
119842375 GGCT
130 AGCT
119842379 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-GG
* * * * * * * * *
119842443 GGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCTTACTACTTAGGGAGATAAGATCTG-CAA--
65 GGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGCT-TGTAAATC
* *
119842502 TTCGGT
128 TTAGCT
* * * * *
119842508 CTGTTACCCTACCGATTA-GGGGTTTAAGTCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
*** *
119842572 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCT
65 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTT-AAGCTTGTAAATCT
* *
119842636 TCGAT
129 TAGCT
* ** * *
119842641 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATTTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * * * * * * *
119842705 AGATAAGATCTG-CAA--TTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CATCT
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG--CTTGTAAATCT
* *
119842765 TCGAT
129 TAGCT
* * ** * * *
119842770 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * *** *
119842833 GGGGGTTAAG-GCTTGTAAAT-TT-GGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CA
63 GGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTT-AAGCTTGTAAA
* *
119842894 TCTTCGAT
126 TCTTAGCT
* ** * *
119842902 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATCTATTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * * * * * *** **
119842966 AGATAAGATCTG-CAA--TTCGGTCTGTTACCCTACCGATTAGGGGTTTAAG-TCCCATCGTCTT
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGCTTGTA-AATCTT
* *
119843027 CGAT
130 AGCT
* * ** * * *
119843031 CTGTTTCCCTACTGCTTA-GGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * * *** *
119843093 GGGAGTTAAG-GCTTGTAAAT-TT-GGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCAT-CA
63 GGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTT-AAGCTTGTAAA
* *
119843153 TCTTCGAT
126 TCTTAGCT
* ** * *
119843161 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATTTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * * * * * * **
119843225 AGATAAGATCTG-CAA--TTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCT-T-CGTCT
66 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG--CTTGTAAATCT
* *
119843285 TCGAT
129 TAGCT
* * * ** * * *
119843290 CTGTTTCCCTACTACTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * * * *** *
119843353 GGGAGTTAAG-GCTTGTAAAT-TT-GGCTTGTTACCCTATTGCTTAGGGGGTTAAAGCCCAT-CA
63 GGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTT-AAGCTTGTAAA
* *
119843414 TCTTTGAT
126 TCTTAGCT
* ** *
119843422 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
119843486 AGATAAGATCTG
66 GGTTAAGATCTG
119843498 CAATTCGGTC
Statistics
Matches: 1237, Mismatches: 206, Indels: 144
0.78 0.13 0.09
Matches are distributed among these distances:
127 3 0.00
128 39 0.03
129 222 0.18
130 212 0.17
131 308 0.25
132 353 0.29
133 90 0.07
134 10 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (133 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGCTTGTAAATCTTA
GCT
Found at i:119842900 original size:261 final size:261
Alignment explanation
Indices: 119842290--119843634 Score: 1976
Period size: 261 Copynumber: 5.1 Consensus size: 261
119842280 CATCTTCGAT
* * * * *
119842290 CTGTTTCCCTACTACTTAGGGGGTTAA-GATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAAAT-TT-GGCTTGTTACCCTACTGCTTAG
* *** * * * * ** *
119842354 GGGGTTAAGGCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCT
63 GGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCT
* * * * * * * *
119842417 TCGATCTGTTTCCCTACTGCTTAGGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCTTA-CTAC
126 TCGATCTGTTTCCCTACTGCTTA-GGGAGATAAGATCTGCA-ATTCGGTCTGTTACCCTACCGA-
* * * ** * * * * * ** *
119842481 TTAGGGAG-ATAAGA-TCTGC-AATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAG-TCCCTT
188 TTAGGG-GTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTA
** *
119842542 CGTCTTC-GAT
252 AATCTTCAG-C
* * * *
119842552 CTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAAAT-TT-GGCTTGTTACCCTACTGCTTAG
119842616 GGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTC
63 GGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTC
*
119842681 GATTTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGG
128 GATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGG
*
119842746 GGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTT
193 GGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTT
119842811 CAGC
258 CAGC
119842815 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGG
119842880 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
66 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
*
119842945 CTATTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
131 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
* *
119843010 TTAAGTCCCATCGTCTTCGATCTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAG
196 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
119843074 C
261 C
*
119843075 CTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA-GGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGG
119843139 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
66 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
*
119843204 TTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
131 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
*
119843269 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAG
196 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
119843334 C
261 C
* *
119843335 CTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTTGGCTTGTTACCCTATTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGG
*
119843400 GTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
66 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
119843465 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
131 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
119843530 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
196 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
119843595 C
261 C
* *
119843596 CTGTTACCCTACTGCTTAGGGGCTTAAGGCTTGTGAATT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATT
119843635 CACTGATTCT
Statistics
Matches: 1013, Mismatches: 59, Indels: 23
0.93 0.05 0.02
Matches are distributed among these distances:
259 168 0.17
260 197 0.19
261 440 0.43
262 141 0.14
263 64 0.06
264 3 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (261 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGG
GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
C
Found at i:119842952 original size:43 final size:43
Alignment explanation
Indices: 119841852--119843623 Score: 1183
Period size: 43 Copynumber: 40.7 Consensus size: 43
119841842 AATTTCCAGC
* * * ** *
119841852 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTTCATCTTCGAT
* * * ** * *
119841896 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-TCATCTTCGAT
* * * *
119841939 CTGTTACCCTACTAG-TTAGGGGGTTAAGATTTGTAAATCTTC-AGC
1 CTGTTTCCCTACT-GCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * ** *
119841984 CTGTTACCCTACTGCTTAGGGGTTTAAGGT-TTGTAAATTCG-G
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
* * * **
119842026 CTTGTTACCCTACTGCTTAGGGGGTTAA-AGTCCATCATTTTTTAT
1 C-TGTTTCCCTACTGCTTAGGGGGTTAAGA-T-CTTCATCTTCGAT
* * *
119842071 CTGTTTCCCTTCTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * * ** *
119842116 CTGTTACCCTACTTCTTAGGGGTTTAAG-GCTTGTAAATTCG-G
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGAT
* ** * *
119842158 CTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTTGAT
1 C-TGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* *
119842202 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* ** *
119842247 CTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
* * *
119842290 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * *
119842335 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGAT
* ** *
119842379 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
119842422 CTGTTTCCCTACTGCTTAGGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTA-GGGGGTTAAGATCTTCATCTTCGAT
* * * * * * *
119842466 CTGTTTCCTTACTACTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * *
119842508 CTGTTACCCTACCGATTAGGGGTTTAAG-TCCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGAT--CTTCATCTTCGAT
* *
119842552 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* ** *
119842597 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
119842641 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
119842684 TTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * *
119842726 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* *
119842770 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * *
119842815 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGAT
* ** *
119842859 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
119842902 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
119842945 CTATTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
119842987 CTGTTACCCTACCGATTAGGGGTTTAAG-TCCCATCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGAT--CTTCATCTTCGAT
* *
119843031 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * * *
119843075 CTGTTACCCTACTGCTTAGGGAGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGAT
* ** *
119843119 -TGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
119843161 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
119843204 TTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
119843246 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* * *
119843290 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* * * * * *
119843335 CTGTTACCCTACTGCTTAGGGAGTTAAG-GCTTGTAAAT-TTGGCT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGAT
* * ** * *
119843379 -TGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGAT
119843422 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * *
119843465 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
* * * * * *
119843507 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGAT
* *
119843551 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-T
* *
119843596 CTGTTACCCTACTGCTTAGGGGCTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAG
119843624 GCTTGTGAAT
Statistics
Matches: 1353, Mismatches: 286, Indels: 177
0.75 0.16 0.10
Matches are distributed among these distances:
41 4 0.00
42 157 0.12
43 492 0.36
44 404 0.30
45 292 0.22
46 4 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (43 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
Found at i:119843239 original size:520 final size:522
Alignment explanation
Indices: 119842552--119843634 Score: 1976
Period size: 520 Copynumber: 2.1 Consensus size: 522
119842542 CGTCTTCGAT
* *
119842552 CTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
1 CTGTTACCCTACTGCTTA-GGGGTTAAGGCT-TGTAAAT-TTCAGCCTGTTACCCTACTGCTTAG
119842616 GGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTC
63 GGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTC
119842681 GATTTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGG
128 GATTTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGG
*
119842746 GGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTT
193 GGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTT
*
119842811 CAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA
258 CAGCCTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTA
119842876 GGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTT
323 GGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTT
119842941 CGATCTATTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAG
388 CGATCTATTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAG
*
119843006 GGGTTTAAGTCCCATCGTCTTCGATCTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCT
453 GGGTTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCT
119843070 TCAGC
518 TCAGC
* *
119843075 CTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTT-GGCTTGTTACCCTACTGCTTA-GG
1 CTGTTACCCTACTGCTTAGGG-GTTAAGGCTTGTAAATTTCAGCCTGTTACCCTACTGCTTAGGG
119843138 GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGA
65 GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGA
119843203 TTTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGG
130 TTTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGG
*
119843268 TTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCA
195 TTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCA
*
119843333 GCCTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTTGGCTTGTTACCCTATTGCTTAGG
260 GCCTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGG
*
119843398 GGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCG
325 GGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCG
*
119843463 ATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGG
390 ATCTATTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGG
*
119843528 GTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC
455 GTTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC
119843593 AGC
520 AGC
*
119843596 CTGTTACCCTACTGCTTAGGGGCTTAAGGCTTGTGAATT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGGCTTGTAAATT
119843635 CACTGATTCT
Statistics
Matches: 543, Mismatches: 13, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
520 426 0.78
521 81 0.15
522 5 0.01
523 29 0.05
524 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (522 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATTTCAGCCTGTTACCCTACTGCTTAGGGG
GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGAT
TTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
TTAAGACCCTTCATCTTCGATCTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAG
CCTGTTACCCTACTGCTTAGGGAGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGG
GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGA
TCTATTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGG
TTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCA
GC
Found at i:119843603 original size:218 final size:214
Alignment explanation
Indices: 119841852--119843623 Score: 1065
Period size: 218 Copynumber: 8.1 Consensus size: 214
119841842 AATTTCCAGC
* * * * * *
119841852 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GCCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
** * * ** *
119841917 GGTTAAGATCTGT-AAATTCAACCTGTTACCCTACTAG-TTAGGGGGTTAAGATTTGTAAATCTT
65 GGTTAAGATCT-TCATCTTCGATCTGTTACCCTACT-GCTTA-GGGGTTAAGACCTG-CAA--TT
* * * * ** * *
119841980 C-AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGT-TTGTAAATTCG-GCTTGTTACCCTACTGC
124 CGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTT-CATCTTCGATC-TGTTTCCCTACTGC
* ** * * ***
119842042 TTAGGGGGTTAA-AGTCCATCATTTTTTAT
186 TTAGGGAGTTAAGA-TCTGTAAATTTCGGT
* * ** * * * *
119842071 CTGTTTCCCTTCTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTTCTTAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
* * * ** * * *
119842135 GGGTTTAAG-GCTTGTAAATTCG-GCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCAT-CATCT
63 GGGGTTAAGATCTT-CATCTTCGATC-TGTTACCCTACTGCTTAGGGGTT-AAGACC-TGCA-AT
* * * * *
119842197 TTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTG
123 TCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-TCTGTTTCCCTACTG
* ** * *
119842261 CTTAGGG-GTTAA-AGC-CCATCATCTTCGAT
185 CTTAGGGAGTTAAGATCTGTA-AAT-TTCGGT
* * ** * * *
119842290 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
* * * * *
119842354 GGGGTTAAG-GCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CAT
63 GGGGTTAAGATC-T-T-CATCTTCGATCTGTTACCCTACTGCTTA-GGGGTT-AAGACC-TGCA-
* * * *
119842415 CTTCGATCTGTTTCCCTACTGCTTAGGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCTTACTA
121 ATTCGATCTGTTACCCTACTGCTTA-GGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTG
* *
119842480 CTTAGGGAGATAAGATCTG-CAA-TTCGGT
185 CTTAGGGAGTTAAGATCTGTAAATTTCGGT
* * * *
119842508 CTGTTACCCTACCGATTAGGGGTTTAAGTCCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * *
119842573 GGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCT
65 GGTTAAGATCT-T-CATCTTCGA-TCTGTTACCCTACTGCTTA-GGGGTT-AAGACC-TGCA-AT
* *
119842636 TCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATTTGTTTCCCTACTGCTT
123 TCGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTT
* *
119842701 AGGGAGATAAGATCTG-CAA-TTCGGT
188 AGGGAGTTAAGATCTGTAAATTTCGGT
* * *
119842726 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * * *
119842791 GGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTT
65 GGTTAAGATCT-T-CATCTTCGA-TCTGTTACCCTACTGCTTA-GGGGTTAAGACCTG-CAATTC
* ** *
119842855 G-GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTT
125 GATC-TGTTACCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATCTGTTTCCCTACTGCTT
* * *
119842919 AGGGGGTTAAGATCT-T-CATCTTCGAT
188 AGGGAGTTAAGATCTGTAAAT-TTCGGT
* * * * ** * * * * * *
119842945 CTATTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGTCTGTTACCCTACCGATTAGGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
* * * * * *
119843009 TTTAAG-TCCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTC-
66 GTTAAGAT--CTTCATCTTCGATCTGTTACCCTACTGCTTAGGGGTTAAGACCTG-CAA--TTCG
* * * * * * *
119843072 AGCCTGTTACCCTACTGCTTAGGGAGTTAAG-GCTTGTAAAT-TTGGCT-TGTTACCCTACTGCT
126 A-TCTGTTACCCTACTGCTTAGGGGGTTAAGATC-T-T-CATCTTCGATCTGTTTCCCTACTGCT
* ** * *
119843134 TAGGG-GTTAA-AGC-CCATCATCTTCGAT
187 TAGGGAGTTAAGATCTGTA-AAT-TTCGGT
* ** * *
119843161 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATTTGTTTCCCTACTGCTTAGGGA
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
* * * * * * * **
119843226 GATAAGATCTGCA-ATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
66 GTTAAGATCTTCATCTTCGATCTGTTACCCTACTGCTTAGGGG-TTAAGA-CCTGC-AATTCGAT
* * * * *
119843290 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAG
128 CTGTTACCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
*
119843354 GGAGTTAAG-GCTTGTAAATTT-GG-
190 GGAGTTAAGATC-TGTAAATTTCGGT
* * *
119843377 CTTGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTAGGGGGTT-AAGCCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGG
* * * *
119843442 GGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGT
64 GGGTTAAGATCTTCATCTTCGATCTGTTACCCTACTGCTTAGGG-GTTAAGACCTGCAATTCGAT
* * * * *
119843507 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
128 CTGTTACCCTACTGCTTAGGGGGTTAAGA-TCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * *
119843572 GGTTAAGATCTGTAAATCTTCAGC
192 AGTTAAGATCTGTAAAT-TTCGGT
*
119843596 CTGTTACCCTACTGCTTAGGGGCTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
119843624 GCTTGTGAAT
Statistics
Matches: 1271, Mismatches: 206, Indels: 154
0.78 0.13 0.09
Matches are distributed among these distances:
214 2 0.00
215 80 0.06
216 139 0.11
217 239 0.19
218 379 0.30
219 280 0.22
220 132 0.10
221 20 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (214 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGCCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTTCATCTTCGATCTGTTACCCTACTGCTTAGGGGTTAAGACCTGCAATTCGATCTG
TTACCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGTT
AAGATCTGTAAATTTCGGT
Found at i:119845792 original size:35 final size:36
Alignment explanation
Indices: 119845748--119845913 Score: 196
Period size: 35 Copynumber: 4.6 Consensus size: 36
119845738 TCCTCATTGA
** *
119845748 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
119845783 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
119845823 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
119845858 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
*
119845893 GATACCATA-CTACATTTCACA
1 AATACCATACCTACATTTCACA
119845914 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
34 12 0.10
35 74 0.64
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:119845831 original size:75 final size:74
Alignment explanation
Indices: 119845744--119845913 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 74
119845734 GTTTTCCTCA
** * * **
119845744 TTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
119845808 CAGTATGGAT
65 CAGTATGGAT
*
119845818 TTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
119845883 CAGTATGGA-
65 CAGTATGGAT
119845892 -TG--ATACCATA-CTACATTTCACA
1 TTGAAATACCATACCTACATTTCACA
119845914 CTTTGCCATG
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
69 12 0.14
70 8 0.09
73 2 0.02
74 7 0.08
75 58 0.67
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:119847585 original size:28 final size:28
Alignment explanation
Indices: 119847554--119847611 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
119847544 TTTCCGCTTA
*
119847554 TTTTT-TTTTAGAATTTTTTTGTTTTTT
1 TTTTTGTTTTAGAATTTTTGTGTTTTTT
* **
119847581 TTTTTGTTTTCGTGTTTTTGTGTTTTTT
1 TTTTTGTTTTAGAATTTTTGTGTTTTTT
119847609 TTT
1 TTT
119847612 ATGCATTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.05, C:0.02, G:0.12, T:0.81
Consensus pattern (28 bp):
TTTTTGTTTTAGAATTTTTGTGTTTTTT
Found at i:119847628 original size:6 final size:6
Alignment explanation
Indices: 119847617--119847652 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
119847607 TTTTTATGCA
119847617 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
119847653 ATATAACTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TTTGCC
Found at i:119851940 original size:25 final size:23
Alignment explanation
Indices: 119851906--119851984 Score: 92
Period size: 21 Copynumber: 3.4 Consensus size: 23
119851896 AAAAAGTAAC
119851906 CTTTCCAAAAAACAAAAACAACCTT
1 CTTTCCAAAAAACAAAAA-AACC-T
119851931 CTTTCCAAAAAAACAAAAAAACC-
1 CTTTCC-AAAAAACAAAAAAACCT
*
119851954 C-CTCCAAAAAACAAAAAAACCT
1 CTTTCCAAAAAACAAAAAAACCT
*
119851976 C-CTCCAAAA
1 CTTTCCAAAA
119851985 CAAAGAACAA
Statistics
Matches: 51, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
21 16 0.31
22 12 0.24
23 1 0.02
25 10 0.20
26 12 0.24
ACGTcount: A:0.56, C:0.30, G:0.00, T:0.14
Consensus pattern (23 bp):
CTTTCCAAAAAACAAAAAAACCT
Found at i:119851971 original size:23 final size:24
Alignment explanation
Indices: 119851909--119852016 Score: 86
Period size: 25 Copynumber: 4.7 Consensus size: 24
119851899 AAGTAACCTT
* *
119851909 TCCAAAAAAC-AAAAACAACCTTCTT
1 TCCAAAAAACAAAAAAAAACC-TC-C
*
119851934 TCCAAAAAA-ACAAAAAAACC-CC
1 TCCAAAAAACAAAAAAAAACCTCC
119851956 TCCAAAAAAC--AAAAAAACCTCC
1 TCCAAAAAACAAAAAAAAACCTCC
* *
119851978 TCC--AAAACAAAGAACAATCCTCC
1 TCCAAAAAACAAA-AAAAAACCTCC
*
119852001 TCCAAAAAACCAAAAA
1 TCCAAAAAACAAAAAA
119852017 CCCACTCCCT
Statistics
Matches: 68, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
20 5 0.07
21 9 0.13
22 15 0.22
23 13 0.19
24 2 0.03
25 24 0.35
ACGTcount: A:0.57, C:0.31, G:0.01, T:0.11
Consensus pattern (24 bp):
TCCAAAAAACAAAAAAAAACCTCC
Done.