Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 398 of 410
Found at i:120634336 original size:45 final size:46
Alignment explanation
Indices: 120634262--120634613 Score: 168
Period size: 46 Copynumber: 7.7 Consensus size: 46
120634252 TTGTTCAATA
* ** * *
120634262 GATGTCATAGTATCTCCCATCCACGGTCTTATTTATCTT-TGACAT
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTCTGACAT
* * * * *
120634307 GATGCCATAGTGTCTTTCAACTATGGTCTTAGTTATTTTCTGCCAT
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTCTGACAT
* * * *
120634353 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTCAT-ATCAC
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTC-TGA-CAT
* * * *
120634399 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTCAT-ATCAC
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTC-TGA-CAT
* * * * *** *
120634445 GTTGCCATGGTATATTTGAACCATGGTCTTACACAT-TTCAT-ATCAG
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTC-TGA-CAT
* * *** * *
120634491 GTTGCCATGGTATCTTTCAACCATGGTCTTACACAT-TAC-GTATCAG
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTCTG-A-CAT
* * *** *
120634537 GTTGCCATGGTATCTTTCAACCATGGTCTTACACAT-TTC-GTATCAG
1 GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTCTG-A-CAT
* *
120634583 GTTGCCATGGTATCTTTCAACCATGGTCTTA
1 GATGCCATAGTATCTTTCAACCATGGTCTTA
120634614 CACATTACGT
Statistics
Matches: 275, Mismatches: 27, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
45 33 0.12
46 242 0.88
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (46 bp):
GATGCCATAGTATCTTTCAACCATGGTCTTATTTATCTTCTGACAT
Found at i:120634369 original size:46 final size:46
Alignment explanation
Indices: 120634353--120634701 Score: 563
Period size: 46 Copynumber: 7.6 Consensus size: 46
120634343 TTTCTGCCAT
** *
120634353 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
** *
120634399 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
120634445 GTTGCCATGGTATATTTGAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
120634491 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTACGTATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
120634537 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCGTATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
120634583 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTACGTATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
120634629 GTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCTTATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
120634675 GTTGCCATGGTATCTTTCAACCATGGT
1 GTTGCCATGGTATCTTTCAACCATGGT
120634702 ATCTTTCGTA
Statistics
Matches: 288, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 288 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:120636485 original size:11 final size:11
Alignment explanation
Indices: 120636469--120636518 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
120636459 ATACTAATAA
120636469 AATAATAAAAT
1 AATAATAAAAT
120636480 AATAATAAAAT
1 AATAATAAAAT
* *
120636491 ATCTTATTAAAAT
1 A--ATAATAAAAT
*
120636504 ATTAATAAAAT
1 AATAATAAAAT
120636515 AATA
1 AATA
120636519 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 24 0.73
13 9 0.27
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:120637573 original size:21 final size:21
Alignment explanation
Indices: 120637514--120637574 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
120637504 GCACATAGGT
* *
120637514 GCTAAACAAAAACCCGTAAGG
1 GCTAAACAAAAACCCATAAGA
* ** * *
120637535 GTTAAACGGAAGCTCATAAGA
1 GCTAAACAAAAACCCATAAGA
120637556 GCTAAACAAAAACCCATAA
1 GCTAAACAAAAACCCATAA
120637575 CGGTTAAACT
Statistics
Matches: 28, Mismatches: 12, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.49, C:0.21, G:0.16, T:0.13
Consensus pattern (21 bp):
GCTAAACAAAAACCCATAAGA
Found at i:120637582 original size:21 final size:20
Alignment explanation
Indices: 120637516--120637583 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
120637506 ACATAGGTGC
*
120637516 TAAACAAAAACCCGTAAGGGT
1 TAAACAAAAACCCATAA-GGT
** * * *
120637537 TAAACGGAAGCTCATAAGAGC
1 TAAACAAAAACCCATAAG-GT
120637558 TAAACAAAAACCCATAACGGT
1 TAAACAAAAACCCATAA-GGT
120637579 TAAAC
1 TAAAC
120637584 TAAAGCTCAA
Statistics
Matches: 34, Mismatches: 11, Indels: 4
0.69 0.22 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.94
22 1 0.03
ACGTcount: A:0.49, C:0.21, G:0.16, T:0.15
Consensus pattern (20 bp):
TAAACAAAAACCCATAAGGT
Found at i:120637612 original size:42 final size:42
Alignment explanation
Indices: 120637514--120637623 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
120637504 GCACATAGGT
* * *
120637514 GCTAAACAAAAACCCGTAAGGGTTAAACGGAAGCTCATAAGA
1 GCTAAACAAAAACCCATAAGGGTTAAACGAAAGCTCAAAAGA
* *
120637556 GCTAAACAAAAACCCATAACGGTTAAACTAAAGCTCAAAAGA
1 GCTAAACAAAAACCCATAAGGGTTAAACGAAAGCTCAAAAGA
* *** *
120637598 GCTGAACTGGAACCCAAAAGGGTTAA
1 GCTAAACAAAAACCCATAAGGGTTAA
120637624 TCTGAAACTC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (42 bp):
GCTAAACAAAAACCCATAAGGGTTAAACGAAAGCTCAAAAGA
Found at i:120640049 original size:18 final size:19
Alignment explanation
Indices: 120640026--120640066 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
120640016 TTGATTCTCA
*
120640026 GGGAAG-CAAAGAAAGCTT
1 GGGAAGTCAAAAAAAGCTT
*
120640044 GGGAAGTCAAAAAAAGGTT
1 GGGAAGTCAAAAAAAGCTT
120640063 GGGA
1 GGGA
120640067 TTTAGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.44, C:0.07, G:0.37, T:0.12
Consensus pattern (19 bp):
GGGAAGTCAAAAAAAGCTT
Found at i:120645093 original size:160 final size:161
Alignment explanation
Indices: 120644900--120645189 Score: 370
Period size: 160 Copynumber: 1.8 Consensus size: 161
120644890 TTATATTAAG
* *** *
120644900 AAATAAATTAAATAAAGACAAATGTATGGTGATGATTTGATACAAGTGTATTAATAAAAATACAT
1 AAATAAATTAAATAAAGACAAATGTAGGGTGATGATAAAATACAAGTGTAATAATAAAAATACAT
* *
120644965 ACATTTGTAATACTTATAATTT-AGTATTAAATAGATATTTAT-TTAA-ATTATTATATTAAATT
66 ACAGTTGTAATACATAT-ATTTGA-TATTAAATAGATATTTATCTTAACATTATTATATTAAATT
120645027 ATTGTTATAATAATAATTATTATTAATATTATC
129 ATTGTTATAATAATAATTATTATTAATATTATC
* * * * * *** **
120645060 AAATAAATTGAATTATGATAAATGTAGGGTGATGATAAAATACATGTGTAATAATATGTATGTAT
1 AAATAAATTAAATAAAGACAAATGTAGGGTGATGATAAAATACAAGTGTAATAATAAAAATACAT
*
120645125 ACAGTTGTAATACATGTATTTGATATTAAATAGATATTTATCTTAACTATTATTATATTAAATTA
66 ACAGTTGTAATACATATATTTGATATTAAATAGATATTTATCTTAAC-ATTATTATATTAAATTA
120645190 ATAAACAAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
159 22 0.20
160 69 0.64
162 17 0.16
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (161 bp):
AAATAAATTAAATAAAGACAAATGTAGGGTGATGATAAAATACAAGTGTAATAATAAAAATACAT
ACAGTTGTAATACATATATTTGATATTAAATAGATATTTATCTTAACATTATTATATTAAATTAT
TGTTATAATAATAATTATTATTAATATTATC
Found at i:120646411 original size:18 final size:18
Alignment explanation
Indices: 120646357--120646416 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
120646347 ATATTACTGG
120646357 ATTGAATAACTGATTGTT
1 ATTGAATAACTGATTGTT
* *
120646375 ATTG-AT---TGTTTGAT
1 ATTGAATAACTGATTGTT
120646389 ATTGAATAACTGATTGTT
1 ATTGAATAACTGATTGTT
120646407 ATTGAATAAC
1 ATTGAATAAC
120646417 AATAAACAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 10 0.29
15 2 0.06
17 2 0.06
18 20 0.59
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (18 bp):
ATTGAATAACTGATTGTT
Found at i:120650765 original size:26 final size:26
Alignment explanation
Indices: 120650656--120650757 Score: 168
Period size: 26 Copynumber: 3.9 Consensus size: 26
120650646 CATGAAATTC
120650656 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120650682 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
120650708 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
120650734 TTATCATGGAATATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
120650758 TTTTATCAAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:120661468 original size:80 final size:80
Alignment explanation
Indices: 120661330--120661487 Score: 282
Period size: 80 Copynumber: 2.0 Consensus size: 80
120661320 TTAATGAGGA
120661330 AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACTCCAGT-T
1 AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACTCCA-TCT
120661394 ATTATTTGTAACATGG
65 ATTATTTGTAACATGG
* *
120661410 AAAAGAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAGATATAGGACTCCATCTA
1 AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACTCCATCTA
120661475 TTATTTGTAACAT
66 TTATTTGTAACAT
120661488 TAATTTAATA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.27
Consensus pattern (80 bp):
AAAAAAAAACTACAACATGGTAATACATTACAAGAATGGAAATCTCAAATATAGGACTCCATCTA
TTATTTGTAACATGG
Found at i:120662007 original size:2 final size:2
Alignment explanation
Indices: 120662000--120662029 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
120661990 ATTTGATCTA
120662000 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120662030 TGAGAAGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120666174 original size:11 final size:11
Alignment explanation
Indices: 120666158--120666184 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
120666148 AAATTTCCAC
120666158 ACACATAATAA
1 ACACATAATAA
120666169 ACACATAATAA
1 ACACATAATAA
120666180 ACACA
1 ACACA
120666185 AAAATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.22, G:0.00, T:0.15
Consensus pattern (11 bp):
ACACATAATAA
Found at i:120673138 original size:36 final size:37
Alignment explanation
Indices: 120673086--120673213 Score: 113
Period size: 36 Copynumber: 3.5 Consensus size: 37
120673076 AAATTTAGAT
* *
120673086 AAACCTATAAAAATTATAAAA-ATATAAAA-GCTAATA
1 AAACTTATAAAAATTATAAAACATATAAAATCCTAA-A
*
120673122 AAACTTATAAATATTATAAAACATATAAAATCCTAAA
1 AAACTTATAAAAATTATAAAACATATAAAATCCTAAA
* * * *
120673159 AAA-TTATAATAATTGTAAAAAAATATAGAAGTACCTAAA
1 AAACTTATAAAAATTAT-AAAACATATA-AAAT-CCTAAA
*
120673198 ATA-TTA-AAAAATTATA
1 AAACTTATAAAAATTATA
120673214 TAAAATTAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
36 29 0.38
37 22 0.29
38 14 0.18
39 11 0.14
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.29
Consensus pattern (37 bp):
AAACTTATAAAAATTATAAAACATATAAAATCCTAAA
Found at i:120673149 original size:27 final size:25
Alignment explanation
Indices: 120673084--120673151 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
120673074 AAAAATTTAG
*
120673084 ATAAACCTATAAAAATTATAAAAAT
1 ATAAAACTATAAAAATTATAAAAAT
* *
120673109 ATAAAAGCTAATAAAACTTATAAATATT
1 ATAAAA-CT-ATAAAAATTATAAA-AAT
120673137 ATAAAACATATAAAA
1 ATAAAAC-TATAAAA
120673152 TCCTAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 5 0.14
26 2 0.06
27 20 0.56
28 9 0.25
ACGTcount: A:0.63, C:0.07, G:0.01, T:0.28
Consensus pattern (25 bp):
ATAAAACTATAAAAATTATAAAAAT
Found at i:120676628 original size:17 final size:18
Alignment explanation
Indices: 120676601--120676634 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
120676591 GGCCTACACC
120676601 AAAACTAAAACCAAAAAT
1 AAAACTAAAACCAAAAAT
120676619 AAAA-TAAAACCAAAAA
1 AAAACTAAAACCAAAAA
120676635 AATAAATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (18 bp):
AAAACTAAAACCAAAAAT
Found at i:120678501 original size:2 final size:2
Alignment explanation
Indices: 120678494--120678538 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
120678484 CTTTTACGTG
120678494 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120678536 TA T
1 TA T
120678539 TTTAAATTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:120681561 original size:10 final size:10
Alignment explanation
Indices: 120681546--120681574 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
120681536 GTGTGCCCTA
120681546 ATGAAAGCTT
1 ATGAAAGCTT
120681556 ATGAAAGCTT
1 ATGAAAGCTT
120681566 ATGAAAGCT
1 ATGAAAGCT
120681575 CATAGGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (10 bp):
ATGAAAGCTT
Found at i:120681900 original size:46 final size:47
Alignment explanation
Indices: 120681834--120682070 Score: 156
Period size: 47 Copynumber: 4.8 Consensus size: 47
120681824 TCACATATTA
* * ** *
120681834 CACAACGAAGCCATAGCCCAGCCATGGTCTTACAC-GGATCACAAAT
1 CACACCGATGCCATAGCCCAGATATGGTCTTACACAGGAGCACAAAT
* * * * * *
120681880 CACACTGATTCCATATCCCAGATATGGTCTTATACAGTAGCACATAT
1 CACACCGATGCCATAGCCCAGATATGGTCTTACACAGGAGCACAAAT
* *
120681927 CACACCGATGCCATAGCCCAGATATGGTCTTATA-TGGAAGCACATAAT
1 CACACCGATGCCATAGCCCAGATATGGTCTTACACAGG-AGCACA-AAT
* * *
120681975 CACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAAATCACATAAT
1 CACA-----CCGATGCCATAGCCCAGATATGGTCTTACACAGG--AGCACA-AAT
* *
120682029 CACATCACACTGATGCCATAGCCCAGCTATGGTCTTATACAG
1 --CA-CAC-C-GATGCCATAGCCCAGATATGGTCTTACACAG
120682071 AAATCACATA
Statistics
Matches: 156, Mismatches: 19, Indels: 23
0.79 0.10 0.12
Matches are distributed among these distances:
46 28 0.18
47 45 0.29
48 6 0.04
52 1 0.01
53 32 0.21
54 39 0.25
55 1 0.01
56 2 0.01
57 2 0.01
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (47 bp):
CACACCGATGCCATAGCCCAGATATGGTCTTACACAGGAGCACAAAT
Found at i:120681989 original size:53 final size:51
Alignment explanation
Indices: 120681843--120682086 Score: 220
Period size: 54 Copynumber: 4.9 Consensus size: 51
120681833 ACACAACGAA
** * * *
120681843 GCCATAGCCCAGCCATGGTCTTACACGG-ATCACA-AATCACA---CTGAT
1 GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCCCCGAT
* * * *
120681889 TCCATATCCCAGATATGGTCTTATACAGTAGCACAT-ATCACA---CCGAT
1 GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCCCCGAT
*
120681936 GCCATAGCCCAGATATGGTCTTATATGGAAGCACATAATCACATCTCTCCGAT
1 GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATC-C-CCGAT
* * *
120681989 GCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCACATCACACTGAT
1 GCCATAGCCCAGATATGGTCTTATACGG-AAGCACATAATCACATC-C-CCGAT
* * *
120682043 GCCATAGCCCAGCTATGGTCTTATACAGAAATCACAT-ATCACAT
1 GCCATAGCCCAGATATGGTCTTATAC-GGAAGCACATAATCACAT
120682087 GTTGCCATGG
Statistics
Matches: 168, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
46 22 0.13
47 46 0.27
48 6 0.04
53 38 0.23
54 55 0.33
55 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (51 bp):
GCCATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCCCCGAT
Found at i:120682049 original size:54 final size:54
Alignment explanation
Indices: 120681925--120682086 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
120681915 AGTAGCACAT
* * *
120681925 ATCACACCGATGCCATAGCCCAGATATGGTCTTATATGG-AAGCACATAATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
* *
120681978 ATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
* *
120682032 ATCACACTGATGCCATAGCCCAGCTATGGTCTTATACAGAAATCACAT-ATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
120682085 AT
1 AT
120682087 GTTGCCATGG
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 42 0.42
54 57 0.58
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (54 bp):
ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATAATCAC
Found at i:120684700 original size:134 final size:136
Alignment explanation
Indices: 120684455--120684737 Score: 491
Period size: 134 Copynumber: 2.1 Consensus size: 136
120684445 CATTGGGCCT
**
120684455 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTAGATTACAATAAACTGGGCCTTA
*
120684520 GCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAAC
66 GCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
120684585 ATATGC
131 ATATGC
*
120684591 AAG-CCATTTGGGTAACAGTGGTACTGGG-CAGAGCCCTTTTCA-ATTACAGTAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTT-AGATTACAATAAACTGGGCCTT
*
120684653 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAATATCAGTAAA
65 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
120684718 CATATGC
130 CATATGC
120684725 AAGCCCATTTGGG
1 AAGCCCATTTGGG
120684738 GAGACTATTC
Statistics
Matches: 140, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
134 104 0.74
135 33 0.24
136 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTAGATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
ATATGC
Found at i:120686606 original size:25 final size:26
Alignment explanation
Indices: 120686512--120686620 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
120686502 CATGAAATTC
120686512 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120686538 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
120686564 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
120686590 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
120686615 TTATCA
1 TTATCA
120686621 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:120690626 original size:135 final size:137
Alignment explanation
Indices: 120690380--120690664 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
120690370 CATTGGGCCT
**
120690380 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
120690445 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
120690510 CA-ATGC
131 CATATGC
* *
120690516 AATCCCATTTGGGTAACAGTGGTACTGGG-CAGAGCCCTTTTCAGATTACAGTAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
120690580 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
120690645 CATATGC
131 CATATGC
120690652 AAGCCCATTTGGG
1 AAGCCCATTTGGG
120690665 AGACTACTTA
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 101 0.71
136 42 0.29
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:120692476 original size:26 final size:26
Alignment explanation
Indices: 120692438--120692521 Score: 143
Period size: 26 Copynumber: 3.2 Consensus size: 26
120692428 CATGAAATTC
*
120692438 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
120692464 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCTA
120692490 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
120692516 TTATCA
1 TTATCA
120692522 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
25 1 0.02
26 53 0.96
27 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:120695613 original size:54 final size:53
Alignment explanation
Indices: 120695558--120695701 Score: 165
Period size: 54 Copynumber: 2.8 Consensus size: 53
120695548 ACACGGATCA
* * *
120695558 CATATCACACAGATGCCATATCCCAGATATGGTCTTATACAG-TAGCACAT-AT
1 CATATCACAC-GATGCCATAGCCCAGCTATGGTCTTATACAGAAAGCACATGAT
* * * *
120695610 C--A-CAC-CGATACCATAGCCCAGCTATGGTTTTATACGGAAATCACATGAT
1 CATATCACACGATGCCATAGCCCAGCTATGGTCTTATACAGAAAGCACATGAT
120695659 CATATCACACCGATGCCATAGCCCAGCTATGGTCTTATACAGA
1 CATATCACA-CGATGCCATAGCCCAGCTATGGTCTTATACAGA
120695702 TGGTCTTTTC
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
47 26 0.35
48 7 0.09
49 6 0.08
50 1 0.01
51 1 0.01
52 4 0.05
54 30 0.40
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (53 bp):
CATATCACACGATGCCATAGCCCAGCTATGGTCTTATACAGAAAGCACATGAT
Found at i:120699466 original size:43 final size:42
Alignment explanation
Indices: 120699313--120699469 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 42
120699303 TGTGTTCTCG
* * *
120699313 TGTAAGACCACGTCTGGCACGTTGGCATTGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACATTGGCATTGATATGTGATT-CA
*
120699356 TGTAAGACCATGTCTGGGACATTGGCATTG-TAT-TAGATTCA
1 TGTAAGACCACGTCTGGGACATTGGCATTGATATGT-GATTCA
* * *
120699397 TGTAAGACC-CTGTCTAGGACAGTGGCATCGATATGTGATTGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATTGATATGTGATT-CA
*
120699440 TGTAAGACCACGTCTGGGATATTGGCATTG
1 TGTAAGACCACGTCTGGGACATTGGCATTG
120699470 TGCGATATGC
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 27 0.28
42 14 0.15
43 54 0.56
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATTGATATGTGATTCA
Found at i:120704486 original size:22 final size:24
Alignment explanation
Indices: 120704449--120704538 Score: 84
Period size: 21 Copynumber: 3.9 Consensus size: 24
120704439 ATTTTGAGCC
*
120704449 TCTTAATAT-TTATTTTAAA-TT-
1 TCTTTATATATTATTTTAAACTTG
120704470 TCTTTATATATTATTTTAAACTTG
1 TCTTTATATATTATTTTAAACTTG
* *
120704494 TC-TTAT-TCTTA-TTTAAATTTG
1 TCTTTATATATTATTTTAAACTTG
*
120704515 TCTTTATACAACTTATTTTAAACT
1 TCTTTATA-TA-TTATTTTAAACT
120704539 CTCTTATTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 19 0.35
22 18 0.33
23 6 0.11
24 2 0.04
25 3 0.05
26 7 0.13
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (24 bp):
TCTTTATATATTATTTTAAACTTG
Found at i:120704487 original size:27 final size:26
Alignment explanation
Indices: 120704239--120704485 Score: 120
Period size: 26 Copynumber: 9.5 Consensus size: 26
120704229 TACATACTTC
* *
120704239 TTATATATTATATATTTTCAAAGTTATTT
1 TTATATATTATTTATTTT-AAA-TT-TCT
*
120704268 TTACATATTATTTATTTTAAATTT-T
1 TTATATATTATTTATTTTAAATTTCT
* *
120704293 TTCCACATATGATTTATTTTAAATCTT-T
1 TT--ATATATTATTTATTTTAAAT-TTCT
* * * *
120704321 GTGTTTATTATCTATTTTAAAGTTT-T
1 TTATATATTATTTATTTTAAA-TTTCT
* * * **
120704347 ATATGTATTACTTGGTTTAAATTAT-T
1 TTATATATTATTTATTTTAAATT-TCT
* *
120704373 TTATATGTTATTTACTTTAAAATTTC-
1 TTATATATTATTTA-TTTTAAATTTCT
*
120704399 TTATGTATTATTTATTTTAAATTTCTTT
1 TTATATATTATTTATTTTAAATTTC--T
* * **
120704427 TTACATATTA-TTATTTT-GA-GCCT
1 TTATATATTATTTATTTTAAATTTCT
*
120704450 CT-TA-A-TATTTATTTTAAATTTCT
1 TTATATATTATTTATTTTAAATTTCT
120704473 TTATATATTATTT
1 TTATATATTATTT
120704486 TAAACTTGTC
Statistics
Matches: 165, Mismatches: 37, Indels: 35
0.70 0.16 0.15
Matches are distributed among these distances:
20 2 0.01
21 8 0.05
22 2 0.01
23 5 0.03
24 2 0.01
25 17 0.10
26 62 0.38
27 36 0.22
28 15 0.09
29 16 0.10
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (26 bp):
TTATATATTATTTATTTTAAATTTCT
Found at i:120704515 original size:21 final size:23
Alignment explanation
Indices: 120704449--120704522 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
120704439 ATTTTGAGCC
*
120704449 TCTTA-ATATTTATTTTAAATTTC
1 TCTTATATA-TTATTTTAAATTTG
*
120704472 T-TTATATATTATTTTAAACTTG
1 TCTTATATATTATTTTAAATTTG
*
120704494 TCTTAT-TCTTA-TTTAAATTTG
1 TCTTATATATTATTTTAAATTTG
120704515 TCTT-TATA
1 TCTTATATA
120704523 CAACTTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.02
21 14 0.33
22 20 0.47
23 8 0.19
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (23 bp):
TCTTATATATTATTTTAAATTTG
Found at i:120704559 original size:44 final size:43
Alignment explanation
Indices: 120704455--120704564 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 43
120704445 AGCCTCTTAA
* * *
120704455 TATTTATTTTAAATT-TCTTTATATATTATTTTAAACTTGTCT
1 TATTTATTTTAATTTGTCTTTATAAATTATTTTAAACTTCTCT
*
120704497 TATTCTTATTTAAATTTGTCTTTATACAACTTATTTTAAAC-TCTCT
1 TA-T-TTATTTTAATTTGTCTTTATA-AA-TTATTTTAAACTTCTCT
120704543 TATTTATTTTAATTTGT-TTTAT
1 TATTTATTTTAATTTGTCTTTAT
120704565 TATTGTTCAT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.03
43 6 0.10
44 23 0.40
45 9 0.16
46 7 0.12
47 11 0.19
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (43 bp):
TATTTATTTTAATTTGTCTTTATAAATTATTTTAAACTTCTCT
Found at i:120704629 original size:35 final size:34
Alignment explanation
Indices: 120704586--120704657 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 34
120704576 TTAGGTTTTT
*
120704586 TTTCATATAGTATTTAT-TATATATATATGAC-CTA
1 TTTCATATA-TATATATATATATATATAT-ACTCTA
120704620 TTTCAATATATATATATATATATATATATACTCTA
1 TTTC-ATATATATATATATATATATATATACTCTA
120704655 TTT
1 TTT
120704658 TAAATTGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
34 12 0.35
35 22 0.65
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (34 bp):
TTTCATATATATATATATATATATATATACTCTA
Found at i:120704630 original size:2 final size:2
Alignment explanation
Indices: 120704625--120704649 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120704615 ACCTATTTCA
120704625 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
120704650 CTCTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:120706835 original size:2 final size:2
Alignment explanation
Indices: 120706830--120706884 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
120706820 ATATATATAT
120706830 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
120706872 AG AG AG AG AG AG A
1 AG AG AG AG AG AG A
120706885 AGCTAAAAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:120710657 original size:40 final size:40
Alignment explanation
Indices: 120710602--120710681 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
120710592 GAAGGCTAAG
120710602 TACGGATTCCAGGCCTCAAGAACCCTTTTTGGGGAATATT
1 TACGGATTCCAGGCCTCAAGAACCCTTTTTGGGGAATATT
*
120710642 TACGGATTCTAGGCCTCAAGAACCCTTTTTGGGGAATATT
1 TACGGATTCCAGGCCTCAAGAACCCTTTTTGGGGAATATT
120710682 GACAACTTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (40 bp):
TACGGATTCCAGGCCTCAAGAACCCTTTTTGGGGAATATT
Found at i:120710941 original size:20 final size:20
Alignment explanation
Indices: 120710903--120710950 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
120710893 TAAATTCTAA
* **
120710903 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAAATAATT
120710923 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
120710943 AAA-ATAAA
1 AAAGATAAA
120710951 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:120710994 original size:15 final size:15
Alignment explanation
Indices: 120710974--120711003 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
120710964 ATAATCCTAA
*
120710974 TAATTATCTTAATAT
1 TAATTATCCTAATAT
120710989 TAATTATCCTAATAT
1 TAATTATCCTAATAT
120711004 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:120711590 original size:9 final size:9
Alignment explanation
Indices: 120711576--120711621 Score: 67
Period size: 9 Copynumber: 5.1 Consensus size: 9
120711566 TTTACATATA
120711576 TTTTCTTTT
1 TTTTCTTTT
120711585 TTTTC-TTT
1 TTTTCTTTT
120711593 TTTTCTTTT
1 TTTTCTTTT
*
120711602 TTTCCTTTT
1 TTTTCTTTT
120711611 TTTTACTTTT
1 TTTT-CTTTT
120711621 T
1 T
120711622 ATTTTATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
8 8 0.24
9 19 0.58
10 6 0.18
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:120711598 original size:17 final size:17
Alignment explanation
Indices: 120711576--120711613 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
120711566 TTTACATATA
*
120711576 TTTTCTTTTTTTTCTTT
1 TTTTCTTTTTTTCCTTT
120711593 TTTTCTTTTTTTCCTTT
1 TTTTCTTTTTTTCCTTT
120711610 TTTT
1 TTTT
120711614 TACTTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (17 bp):
TTTTCTTTTTTTCCTTT
Found at i:120711621 original size:8 final size:8
Alignment explanation
Indices: 120711576--120711613 Score: 58
Period size: 8 Copynumber: 4.5 Consensus size: 8
120711566 TTTACATATA
120711576 TTTTCTTTT
1 TTTTC-TTT
120711585 TTTTCTTT
1 TTTTCTTT
120711593 TTTTCTTT
1 TTTTCTTT
120711601 TTTTCCTTT
1 TTTT-CTTT
120711610 TTTT
1 TTTT
120711614 TACTTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 15 0.54
9 13 0.46
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTCTTT
Found at i:120712582 original size:15 final size:14
Alignment explanation
Indices: 120712562--120712641 Score: 82
Period size: 13 Copynumber: 6.0 Consensus size: 14
120712552 TTAATATCTA
120712562 AAAATAATAAATAAT
1 AAAATAATAAA-AAT
*
120712577 AAAATAAT-AAGAT
1 AAAATAATAAAAAT
120712590 AAAATAA-ATAAAAT
1 AAAATAATA-AAAAT
120712604 -AAA-AATAAAAAT
1 AAAATAATAAAAAT
120712616 AAAAT-A-AAAAAT
1 AAAATAATAAAAAT
*
120712628 AAAAAAATAAAAAT
1 AAAATAATAAAAAT
120712642 TGGGTTGCCT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
12 17 0.31
13 18 0.33
14 12 0.22
15 8 0.15
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (14 bp):
AAAATAATAAAAAT
Found at i:120712591 original size:5 final size:5
Alignment explanation
Indices: 120712574--120712639 Score: 59
Period size: 5 Copynumber: 13.4 Consensus size: 5
120712564 AATAATAAAT
*
120712574 AATAA AAT-- AATAA GATAA AAT-A AATAA AATAAA AATAAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA AATAA AATAA
*
120712623 AA-AA TAAAAA AATAA AA
1 AATAA -AATAA AATAA AA
120712640 ATTGGGTTGC
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.06
4 6 0.12
5 30 0.58
6 13 0.25
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:120718971 original size:20 final size:20
Alignment explanation
Indices: 120718946--120718993 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
120718936 TAAATTCTAA
* * *
120718946 AAAGATGAATACAGTTAATT
1 AAAGATAAATAAAGATAATT
120718966 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
120718986 AAA-ATAAA
1 AAAGATAAA
120718994 ATCCTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.10, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:120719037 original size:15 final size:15
Alignment explanation
Indices: 120719017--120719046 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
120719007 ATAATCCTAA
*
120719017 TAATTATCTTAATAT
1 TAATTATCCTAATAT
120719032 TAATTATCCTAATAT
1 TAATTATCCTAATAT
120719047 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:120721215 original size:20 final size:18
Alignment explanation
Indices: 120721190--120721249 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 18
120721180 GTTGTGTTGT
120721190 AAACATGTTGATTGATAG
1 AAACATGTTGATTGATAG
* *
120721208 AATTACATAGATG-TTGTATCG
1 AA--ACAT-GTTGATTG-ATAG
120721229 TAAACATGTTGATTGATAG
1 -AAACATGTTGATTGATAG
120721248 AA
1 AA
120721250 GCTTAGTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
18 4 0.12
19 6 0.19
20 14 0.44
21 6 0.19
22 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (18 bp):
AAACATGTTGATTGATAG
Found at i:120721232 original size:40 final size:40
Alignment explanation
Indices: 120721172--120721249 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
120721162 ATTGGAAGAA
* * *
120721172 ACATGGATGTTGTGTTGTAAACATGTTGATTGATAGAATT
1 ACATAGATGTTGTATCGTAAACATGTTGATTGATAGAATT
120721212 ACATAGATGTTGTATCGTAAACATGTTGATTGATAGAA
1 ACATAGATGTTGTATCGTAAACATGTTGATTGATAGAA
120721250 GCTTAGTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (40 bp):
ACATAGATGTTGTATCGTAAACATGTTGATTGATAGAATT
Found at i:120729121 original size:29 final size:30
Alignment explanation
Indices: 120729075--120729131 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
120729065 TTTTAAACAT
120729075 TTTTATAAAGGTTAGGCCCTTATATGAGCA
1 TTTTATAAAGGTTAGGCCCTTATATGAGCA
* * *
120729105 TTTTA-AAAGGTTTGGCCTTTATGTGAG
1 TTTTATAAAGGTTAGGCCCTTATATGAG
120729132 TAACCCCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (30 bp):
TTTTATAAAGGTTAGGCCCTTATATGAGCA
Found at i:120733217 original size:127 final size:130
Alignment explanation
Indices: 120732919--120733218 Score: 333
Period size: 127 Copynumber: 2.3 Consensus size: 130
120732909 CGGGAGATTG
* * *
120732919 CAACCCAGCACGATAGGGCACT-ATTCCTCGAACTGTCAAACATCGAACAATTCTTTCTTTTTAA
1 CAACCCAGCACGATAGGGCA-TGATTCC-CGAATTGTCAAACATCGAACAATCCTTTCTTTTGAA
* * * * *
120732983 AGGGTTTTTAGAAAACGTGAATGAAACTTCGAAGGGATCTTCGATTGTTTAGAACAAATGAAAAA
64 AGGGTTTTTAGAAAACATGAATGAAAC-TCGAAGGAATATCCGATTGTTTAGAACAAACGAAAAA
120733048 GCA
128 GCA
* * * * * *
120733051 CAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCGAAC-ATCCTTTGTTTTGAAA-
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACATCGAACAATCCTTTCTTTTGAAAG
* * * * * *
120733114 GGTTTTTA-ATAAACATGAGTGAAAAC-CTAAGGAATATCCGATTGTTTTGAGCAAACG-AGAAT
66 GGTTTTTAGA-AAACATGAATG-AAACTCGAAGGAATATCCGATTGTTTAGAACAAACGAAAAAG
120733176 CA
129 CA
120733178 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACA
1 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACA
120733219 CCGAGTATTA
Statistics
Matches: 140, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
127 41 0.29
128 25 0.18
129 17 0.12
130 17 0.12
131 16 0.11
132 24 0.17
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (130 bp):
CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACATCGAACAATCCTTTCTTTTGAAAG
GGTTTTTAGAAAACATGAATGAAACTCGAAGGAATATCCGATTGTTTAGAACAAACGAAAAAGCA
Found at i:120733392 original size:130 final size:130
Alignment explanation
Indices: 120733246--120733482 Score: 352
Period size: 130 Copynumber: 1.8 Consensus size: 130
120733236 TTTAAAAGAT
* * * *
120733246 TTTTAGAAGACCTGAGTGAAATTTTGAAG-GAATATTTGATTATTTTAAACCAACGAGAAATTGC
1 TTTTAAAAGACATGAGTGAAATTTTGAAGTG-ATATTCGATTATTTTAAACAAACGAGAAATTGC
* *
120733310 AACCCAACATATTAGGGCACGATTCCAG-GAATTGCCAAATATCGCATATCGCCTTCGTTTAAGG
65 AACCCAACACATTAGGGCACAATTCC-GCGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGG
120733374 GA
129 GA
* * *
120733376 TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAACGCGAAATTGCA
1 TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTAAACAAACGAGAAATTGCA
*
120733441 ACCCAACACGTTAGGGCACAATTCCGCGAATTGCCAAATATC
66 ACCCAACACATTAGGGCACAATTCCGCGAATTGCCAAATATC
120733483 AAATCTCGTC
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
129 1 0.01
130 93 0.98
131 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (130 bp):
TTTTAAAAGACATGAGTGAAATTTTGAAGTGATATTCGATTATTTTAAACAAACGAGAAATTGCA
ACCCAACACATTAGGGCACAATTCCGCGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGGGA
Found at i:120735826 original size:25 final size:27
Alignment explanation
Indices: 120735789--120735841 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
120735779 TCAAACATGC
120735789 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
120735815 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
120735841 A
1 A
120735842 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:120737357 original size:26 final size:26
Alignment explanation
Indices: 120737321--120737430 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
120737311 CATGAAATTC
120737321 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
120737347 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
120737373 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
120737399 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
120737425 TTATCA
1 TTATCA
120737431 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:120741455 original size:133 final size:133
Alignment explanation
Indices: 120741228--120741626 Score: 672
Period size: 133 Copynumber: 3.0 Consensus size: 133
120741218 AATCTTGGGT
* * * *
120741228 CTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCCGCTTCACTGCAATATCAGGA
* *
120741293 AACCTAGATCCTCCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
66 AGCCTAGATCCACCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
120741358 AAC
131 AAC
*
120741361 CTACTCCACTACAACTTTAGAGAGCTAGGATGGTGGCTTAAATCCGCTTCACTGCAATATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCCGCTTCACTGCAATATCAGGA
*
120741426 AGTCTAGATCCACCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
66 AGCCTAGATCCACCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
120741491 AAC
131 AAC
*
120741494 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCCGCTTCACTGCAATATCAAGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCCGCTTCACTGCAATATCAGGA
*** * *
120741559 AGCCTAGATCCGTTGTCTTCGATCTGCTCCACTGCAATCTCAGGGGAACAAGATCTACTATCTTC
66 AGCCTAGATCCACCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
120741624 AAC
131 AAC
120741627 TTGTTGCCCC
Statistics
Matches: 250, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 250 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (133 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCCGCTTCACTGCAATATCAGGA
AGCCTAGATCCACCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
AAC
Found at i:120741480 original size:45 final size:45
Alignment explanation
Indices: 120741268--120741503 Score: 108
Period size: 45 Copynumber: 5.3 Consensus size: 45
120741258 TGGTGACTTA
* * *
120741268 AATCTGCTTCACTGCAA-CATCA-GGAAACCTAGATCCTCCGTCTTC
1 AATCTGCTCCACTGCAATC-TCAGGGAAA-CAAGATCCACCGTCTTC
* * **
120741313 GATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
1 AATCTGCTCCACTGCAATCTCAGGGAAACAAGATCCACCGTCTTC
* * * * * * * *** * *
120741358 AACCTACTCCACTACAA-CTTTAGAG-AGCTAGGAT--GGTGGCTTA
1 AATCTGCTCCACTGCAATC-TCAGGGAAAC-AAGATCCACCGTCTTC
* * * * *
120741401 AATCCGCTTCACTGCAATATCA-GGAAGTCTAGATCCACCGTCTTC
1 AATCTGCTCCACTGCAATCTCAGGGAA-ACAAGATCCACCGTCTTC
* * **
120741446 GATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
1 AATCTGCTCCACTGCAATCTCAGGGAAACAAGATCCACCGTCTTC
* *
120741491 AACCTACTCCACT
1 AATCTGCTCCACT
120741504 ACAACTTTAG
Statistics
Matches: 132, Mismatches: 49, Indels: 20
0.66 0.24 0.10
Matches are distributed among these distances:
42 1 0.01
43 21 0.16
44 4 0.03
45 96 0.73
46 10 0.08
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (45 bp):
AATCTGCTCCACTGCAATCTCAGGGAAACAAGATCCACCGTCTTC
Found at i:120741835 original size:65 final size:64
Alignment explanation
Indices: 120741727--120741855 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 64
120741717 TCATGTATCT
*
120741727 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATAAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAAATGTG
* * * *
120741791 ATGCTTTATGTCAAATAATTAGGATGTTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAAATGTG
120741856 TTATTATATG
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
64 4 0.07
65 55 0.93
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATAAATCAAATGCTCCTAACTAAATGTG
Found at i:120758624 original size:26 final size:26
Alignment explanation
Indices: 120758585--120758635 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
120758575 TCAAATTTCT
* *
120758585 CTTTTACATGTTATTTATCTTAAACC
1 CTTTTAAATATTATTTATCTTAAACC
*
120758611 CTTTTAAATATTATTTATTTTAAAC
1 CTTTTAAATATTATTTATCTTAAAC
120758636 TATTTGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.02, T:0.53
Consensus pattern (26 bp):
CTTTTAAATATTATTTATCTTAAACC
Found at i:120763494 original size:17 final size:18
Alignment explanation
Indices: 120763461--120763496 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
120763451 ATCATATTCT
*
120763461 ATTAAATAAATTATAAAA
1 ATTAAATAAAATATAAAA
120763479 ATTAAA-AAAATATAAAA
1 ATTAAATAAAATATAAAA
120763496 A
1 A
120763497 AAACAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
ATTAAATAAAATATAAAA
Found at i:120763497 original size:18 final size:18
Alignment explanation
Indices: 120763461--120763496 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
120763451 ATCATATTCT
*
120763461 ATTAAATAAATTATAAAA
1 ATTAAAAAAATTATAAAA
120763479 ATTAAAAAAA-TATAAAA
1 ATTAAAAAAATTATAAAA
120763496 A
1 A
120763497 AAACAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
ATTAAAAAAATTATAAAA
Found at i:120764638 original size:25 final size:25
Alignment explanation
Indices: 120764605--120764660 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
120764595 ATTTATCAAA
* *
120764605 AAAAT-ATAAGAAT-TATTAAATATT
1 AAAATAATAAAAATGTATGAAA-ATT
120764629 AAAATAATAAAAATGTATGAAAATT
1 AAAATAATAAAAATGTATGAAAATT
*
120764654 AATATAA
1 AAAATAA
120764661 ACTTATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 5 0.19
25 16 0.59
26 6 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (25 bp):
AAAATAATAAAAATGTATGAAAATT
Found at i:120764723 original size:21 final size:20
Alignment explanation
Indices: 120764698--120764745 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
120764688 TTCTAATAAA
*
120764698 TTATAAAAAATCTTTAAAATT
1 TTATAAAAAAT-ATTAAAATT
120764719 TTATAAAAAAATATTAAAATT
1 TTAT-AAAAAATATTAAAATT
*
120764740 ATATAA
1 TTATAA
120764746 TAATCATCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 15 0.62
22 7 0.29
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TTATAAAAAATATTAAAATT
Found at i:120765215 original size:9 final size:10
Alignment explanation
Indices: 120765201--120765254 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 10
120765191 TAGTTATCAT
120765201 TTTTTAT-AA
1 TTTTTATAAA
120765210 TTTTTATAAA
1 TTTTTATAAA
**
120765220 TTTTTATCTA
1 TTTTTATAAA
*
120765230 -TTTTA-ATA
1 TTTTTATAAA
120765238 TTTTTATAATA
1 TTTTTATAA-A
120765249 TTTTTA
1 TTTTTA
120765255 CAATTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
8 2 0.05
9 17 0.46
10 11 0.30
11 7 0.19
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:120765232 original size:20 final size:18
Alignment explanation
Indices: 120765201--120765284 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 18
120765191 TAGTTATCAT
*
120765201 TTTTTATAATTTTTATAAA
1 TTTTTATTATTTTTA-AAA
*
120765220 TTTTTATCTA-TTTTAATA
1 TTTTTAT-TATTTTTAAAA
*
120765238 TTTTTATAATATTTTTACAATT
1 TTTTTAT--TATTTTTA-AA-A
*
120765260 TTTTTATTATCTTTTAAGA
1 TTTTTATTAT-TTTTAAAA
120765279 TTTTTA
1 TTTTTA
120765285 ATAAACTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
18 9 0.17
19 20 0.38
20 10 0.19
21 6 0.12
22 7 0.13
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTTTATTATTTTTAAAA
Found at i:120765249 original size:11 final size:11
Alignment explanation
Indices: 120765201--120765266 Score: 56
Period size: 11 Copynumber: 6.6 Consensus size: 11
120765191 TAGTTATCAT
120765201 TTTTTAT-A-A
1 TTTTTATAATA
120765210 TTTTTATAA-A
1 TTTTTATAATA
*
120765220 TTTTTAT-CTA
1 TTTTTATAATA
120765230 --TTT-TAATA
1 TTTTTATAATA
120765238 TTTTTATAATA
1 TTTTTATAATA
* *
120765249 TTTTTACAATT
1 TTTTTATAATA
120765260 TTTTTAT
1 TTTTTAT
120765267 TATCTTTTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
7 1 0.02
8 5 0.11
9 7 0.15
10 13 0.28
11 20 0.43
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTTATAATA
Found at i:120765387 original size:11 final size:10
Alignment explanation
Indices: 120765363--120765449 Score: 50
Period size: 11 Copynumber: 8.3 Consensus size: 10
120765353 GATTTTTATA
*
120765363 TTTTGTAATAT
1 TTTTATAAT-T
*
120765374 TTTCATAATT
1 TTTTATAATT
*
120765384 TTTT-TATTT
1 TTTTATAATT
120765393 TTTTATAATT
1 TTTTATAATT
*
120765403 TTATATCAATT
1 TTTTAT-AATT
* **
120765414 TTAATATTTTAT
1 TT-TTATAAT-T
120765426 TTTTATATATT
1 TTTTATA-ATT
*
120765437 TTTAATAATT
1 TTTTATAATT
120765447 TTT
1 TTT
120765450 ATGCTTTTTG
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
9 8 0.14
10 19 0.32
11 24 0.41
12 8 0.14
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (10 bp):
TTTTATAATT
Found at i:120765438 original size:10 final size:10
Alignment explanation
Indices: 120765354--120765451 Score: 55
Period size: 10 Copynumber: 9.8 Consensus size: 10
120765344 AATGGATTGG
120765354 ATTTTTATAT
1 ATTTTTATAT
*
120765364 -TTTGTA-AT
1 ATTTTTATAT
*
120765372 ATTTTCATA-
1 ATTTTTATAT
120765381 ATTTTT-T-T
1 ATTTTTATAT
*
120765389 ATTTTTTTAT
1 ATTTTTATAT
*
120765399 AATTTTATAT
1 ATTTTTATAT
*
120765409 CAATTTTAATATTTT
1 --ATTTT--TA-TAT
120765424 ATTTTTATAT
1 ATTTTTATAT
120765434 ATTTTTA-AT
1 ATTTTTATAT
120765443 AATTTTTAT
1 -ATTTTTAT
120765452 GCTTTTTGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 23
0.68 0.09 0.23
Matches are distributed among these distances:
8 9 0.13
9 17 0.25
10 26 0.39
11 2 0.03
12 4 0.06
13 5 0.07
14 2 0.03
15 2 0.03
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:120765439 original size:24 final size:26
Alignment explanation
Indices: 120765401--120765448 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
120765391 TTTTTTATAA
120765401 TTTTATATCAATTTTAAT-ATTTTAT
1 TTTTATATCAATTTTAATAATTTTAT
*
120765426 TTTTATAT-ATTTTTAATAATTTT
1 TTTTATATCAATTTTAATAATTTT
120765449 TATGCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTATATCAATTTTAATAATTTTAT
Found at i:120766683 original size:19 final size:18
Alignment explanation
Indices: 120766655--120766694 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
120766645 CCAAAACATC
120766655 CTTCATACCATTATTTTG
1 CTTCATACCATTATTTTG
120766673 CTTCTATACCATTATTTTG
1 CTTC-ATACCATTATTTTG
120766692 CTT
1 CTT
120766695 GTGAATATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.53
Consensus pattern (18 bp):
CTTCATACCATTATTTTG
Found at i:120767211 original size:30 final size:30
Alignment explanation
Indices: 120767170--120767226 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
120767160 GTTGAGTTGG
*
120767170 TACCAGGTTAATTTGTGACACCAACTCAAC
1 TACCAGATTAATTTGTGACACCAACTCAAC
120767200 TACCAGATTAATTTGTGACACCAACTC
1 TACCAGATTAATTTGTGACACCAACTC
120767227 TGTTGTAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (30 bp):
TACCAGATTAATTTGTGACACCAACTCAAC
Found at i:120767447 original size:30 final size:30
Alignment explanation
Indices: 120767413--120767527 Score: 151
Period size: 30 Copynumber: 3.8 Consensus size: 30
120767403 ACTTTTCTCA
*
120767413 ACTAGCCACACATT-TTCCACCACCAACTCC
1 ACTAGCCACAC-TTGCTCCACCACCAACTCC
* *
120767443 ACTAGCCACACTTTCTCCACCACCAAATCC
1 ACTAGCCACACTTGCTCCACCACCAACTCC
** *
120767473 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTTGCTCCACCACCAACTCC
*
120767503 ACTAACCACACTTGCTCCACCACCA
1 ACTAGCCACACTTGCTCCACCACCA
120767528 CTTGTACCTA
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 2 0.03
30 71 0.97
ACGTcount: A:0.29, C:0.46, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACTTGCTCCACCACCAACTCC
Found at i:120768126 original size:25 final size:25
Alignment explanation
Indices: 120768088--120768242 Score: 80
Period size: 25 Copynumber: 6.0 Consensus size: 25
120768078 ATATTACGTA
* *
120768088 TATATATATATATATATATTTTATAC
1 TATAT-TATGTATATATATTTAATAC
* * *
120768114 TATTTTATGTATATATCTTTAATAT
1 TATATTATGTATATATATTTAATAC
* **
120768139 TATATTATTTATATATATATTTTTTTTAC
1 TATATTA--TGTATATATA--TTTAATAC
* * *
120768168 -ATGTTATCTTATATATATATCTTA-AC
1 TATATTAT-GTATATATAT-T-TAATAC
* * *
120768194 TATATTATGTATGTATTTTTAACAC
1 TATATTATGTATATATATTTAATAC
* *
120768219 TATATTATGTACATATTTTTAATA
1 TATATTATGTATATATATTTAATA
120768243 TTATCACGTA
Statistics
Matches: 98, Mismatches: 22, Indels: 19
0.71 0.16 0.14
Matches are distributed among these distances:
24 2 0.02
25 47 0.48
26 15 0.15
27 24 0.24
28 5 0.05
29 5 0.05
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (25 bp):
TATATTATGTATATATATTTAATAC
Found at i:120768127 original size:29 final size:29
Alignment explanation
Indices: 120768094--120768205 Score: 78
Period size: 27 Copynumber: 4.1 Consensus size: 29
120768084 CGTATATATA
120768094 TATATATATATATTTTATACTATTTTATG
1 TATATATATATATTTTATACTATTTTATG
* * * *
120768123 TATATATCTTTAATATTATATTA-TTTA--
1 TATATATATAT-ATTTTATACTATTTTATG
* * *
120768150 TATATATAT-T-TTTTTTAC-ATGTTATC
1 TATATATATATATTTTATACTATTTTATG
* *
120768176 T-TATATATATATCTTA-ACTATATTATG
1 TATATATATATATTTTATACTATTTTATG
120768203 TAT
1 TAT
120768206 GTATTTTTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 17
0.67 0.14 0.18
Matches are distributed among these distances:
23 1 0.02
24 8 0.13
25 7 0.11
26 5 0.08
27 18 0.29
28 1 0.02
29 13 0.21
30 9 0.15
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TATATATATATATTTTATACTATTTTATG
Found at i:120768418 original size:16 final size:15
Alignment explanation
Indices: 120768394--120768441 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
120768384 TAATTATTAT
*
120768394 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
120768410 TATTTTAATATTTTA
1 TATTTTAATATTTTA
120768425 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
120768441 T
1 T
120768442 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:120768429 original size:7 final size:8
Alignment explanation
Indices: 120768394--120768445 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
120768384 TAATTATTAT
*
120768394 TATTCTAA
1 TATTTTAA
*
120768402 TATTTTGA
1 TATTTTAA
120768410 TATTTTAA
1 TATTTTAA
120768418 TATTTT-A
1 TATTTTAA
120768425 TATTTTATA
1 TATTTTA-A
*
120768434 TATTTTAT
1 TATTTTAA
120768442 TATT
1 TATT
120768446 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:120769508 original size:40 final size:40
Alignment explanation
Indices: 120769444--120769549 Score: 110
Period size: 40 Copynumber: 2.6 Consensus size: 40
120769434 AGCAGCGTTT
*
120769444 TTAGCGGCG-TTTTAATTAAAAACGCCACTA-AGGAACAAGCA
1 TTAGCGGCGCTTTT-A-TAAAAACGCCACTATAGGAAC-ACCA
* * * *
120769485 TTAGCGGCGCTTTTATAAAAACGCCGCTATATGTACACCT
1 TTAGCGGCGCTTTTATAAAAACGCCACTATAGGAACACCA
120769525 TTAGCGGCGCTTTT-TAGAAAACGCC
1 TTAGCGGCGCTTTTATA-AAAACGCC
120769550 GCAAAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
39 2 0.04
40 37 0.65
41 14 0.25
42 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCGGCGCTTTTATAAAAACGCCACTATAGGAACACCA
Found at i:120769861 original size:40 final size:40
Alignment explanation
Indices: 120769793--120769905 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 40
120769783 ATTTTAGTGG
120769793 CTTTAGCGGCGCTTTTTTAAGAAACGCCGCTATAAG-TAC-AC
1 CTTTAGCGGCGCTTTTTTAA-AAACGCCGCTA-AAGCT-CGAC
* * *
120769834 CTTTAGCGGCGCTTTTTGAAAAACGCCGCTAATGCTCGAT
1 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGCTCGAC
*
120769874 CTTTAGCGGCG-TTTTTTAAAAACGCCACTAAA
1 CTTTAGCGGCGCTTTTTTAAAAACGCCGCTAAA
120769906 AGATTAAATA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
39 21 0.33
40 24 0.38
41 19 0.30
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (40 bp):
CTTTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGCTCGAC
Found at i:120770301 original size:22 final size:21
Alignment explanation
Indices: 120770276--120770326 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
120770266 CCCTAAATTA
120770276 TAAAACTTAAAACTATAAACCC
1 TAAAAC-TAAAACTATAAACCC
* * *
120770298 TAAATCTAAAACCATAAAACC
1 TAAAACTAAAACTATAAACCC
*
120770319 TTAAACTA
1 TAAAACTA
120770327 TAGACAACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.55, C:0.22, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAAACTAAAACTATAAACCC
Found at i:120770411 original size:14 final size:14
Alignment explanation
Indices: 120770392--120770426 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
120770382 AGAATAAATA
120770392 ATATATATATGGAT
1 ATATATATATGGAT
*
120770406 ATATATATATTGAT
1 ATATATATATGGAT
120770420 ATATATA
1 ATATATA
120770427 GATATTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (14 bp):
ATATATATATGGAT
Found at i:120770697 original size:3 final size:3
Alignment explanation
Indices: 120770689--120770771 Score: 166
Period size: 3 Copynumber: 27.7 Consensus size: 3
120770679 ATTAATAGGA
120770689 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
120770737 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
120770772 AAGAGAAAAA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:120776102 original size:273 final size:276
Alignment explanation
Indices: 120775432--120776852 Score: 2290
Period size: 273 Copynumber: 5.0 Consensus size: 276
120775422 CTAACCTTAT
120775432 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATA-TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
120775497 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
65 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
120775562 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
130 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
120775627 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTA-T-TT
183 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATT
120775690 TTTTATATTAATAATGTTTGATTTTAATA
248 TTTTATATTAATAATGTTTGATTTTAATA
*
120775719 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
1 TTTAAAT-ATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
120775784 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
65 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
120775849 AAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
130 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
120775911 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTTTTTATATTAAT
195 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTTTTTATATTAAT
120775976 AATGTTTGATTTTAATA
260 AATGTTTGATTTTAATA
*
120775993 TTTAAATATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGTCTTATATCGAGCTG
1 TTTAAATATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTG
120776058 CAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
66 CAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
120776123 AAGACTTGAAAAAA-TTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT
131 AAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATTT
120776187 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTT
184 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTA-TT
120776252 TTTTATATTAATAATGTTTGATTTTAATA
248 TTTTATATTAATAATGTTTGATTTTAATA
*
120776281 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
1 TTTAAAT-ATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
120776346 GCAAGATATAATGGAT-CTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
65 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
120776410 AAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
130 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
120776472 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTTTTTATATTAAT
195 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTTTTTATATTAAT
120776537 AATGTTTGATTTTAATA
260 AATGTTTGATTTTAATA
120776554 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATA-TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
120776619 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
65 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
120776684 AAAGACTTGAAAAAA-TTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
130 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
* * *
120776748 TCCAATTTACTTATAAAAATTAAACTACGATTCATTTTTGATATTATTATATTCAAATTACTATT
183 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTA-T
*
120776813 TTTTTATATTAATAATGTTTTATTTTAATA
247 TTTTTATATTAATAATGTTTGATTTTAATA
120776843 TTT-AATATTT
1 TTTAAATATTT
120776853 TTAAATTTCT
Statistics
Matches: 1080, Mismatches: 15, Indels: 78
0.92 0.01 0.07
Matches are distributed among these distances:
272 90 0.08
273 263 0.24
274 175 0.16
275 1 0.00
276 3 0.00
277 1 0.00
278 3 0.00
283 3 0.00
284 4 0.00
285 1 0.00
287 237 0.22
288 177 0.16
289 122 0.11
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.40
Consensus pattern (276 bp):
TTTAAATATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTG
CAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
AAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTTA
TAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTTTTTATATTAATA
ATGTTTGATTTTAATA
Found at i:120776650 original size:562 final size:563
Alignment explanation
Indices: 120775432--120776847 Score: 2734
Period size: 562 Copynumber: 2.5 Consensus size: 563
120775422 CTAACCTTAT
120775432 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
120775497 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
120775562 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAA-TTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
120775627 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAA-T--TATT
195 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATT
120775689 TTTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTG
260 TTTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTG
120775754 GAAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAAC
325 GAAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAAC
120775819 GCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC
390 GCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC
120775884 TATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTAT
455 TATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTAT
120775949 ATTTAAATTACTATTTTTTATATTAATAATGTTTGATTTTAATA
520 ATTTAAATTACTATTTTTTATATTAATAATGTTTGATTTTAATA
*
120775993 TTTAAATA-TTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGTCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
120776057 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
120776122 AAAGACTTGAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT
131 AAAGACTTGAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT
120776187 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTT
196 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTT
120776252 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
261 TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
120776317 AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGAT-CTCCCTAGGTGTAACAACG
326 AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
120776381 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
391 CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
120776446 ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
456 ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
120776511 TTTAAATTACTATTTTTTATATTAATAATGTTTGATTTTAATA
521 TTTAAATTACTATTTTTTATATTAATAATGTTTGATTTTAATA
120776554 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
120776619 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
120776684 AAAGACTTGAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT
131 AAAGACTTGAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT
* * *
120776749 CCAATTTACTTATAAAAATTAAACTACGATTCATTTTTGATATTATTATATTCAAATTACTATTT
196 CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTT
*
120776814 TTTTATATTAATAATGTTTTATTTTAATATTTAA
261 TTTTATATTAATAATGTTTGATTTTAATATTTAA
120776848 TATTTTTAAA
Statistics
Matches: 844, Mismatches: 7, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
559 106 0.13
560 135 0.16
561 208 0.25
562 395 0.47
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.40
Consensus pattern (563 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATTT
CCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATTT
TTTTATATTAATAATGTTTGATTTTAATATTTAAATAATTTAAAGATTCAAAGTATATAGGCTGG
AAACCTGACGGGTTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACG
CCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATTGAGCTCATTTACT
ATTCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATA
TTTAAATTACTATTTTTTATATTAATAATGTTTGATTTTAATA
Found at i:120777521 original size:9 final size:9
Alignment explanation
Indices: 120777509--120777626 Score: 134
Period size: 9 Copynumber: 13.4 Consensus size: 9
120777499 ATTTGATATC
120777509 ATAACTTAT
1 ATAACTTAT
120777518 ATAAC--AT
1 ATAACTTAT
*
120777525 ATAACTTAC
1 ATAACTTAT
120777534 ATAACTTAT
1 ATAACTTAT
* *
120777543 ATAACATAC
1 ATAACTTAT
120777552 ATAACTTAT
1 ATAACTTAT
* *
120777561 ATAACATAC
1 ATAACTTAT
120777570 ATAACTTAT
1 ATAACTTAT
120777579 ATAACTTAT
1 ATAACTTAT
*
120777588 ATAACTTAG
1 ATAACTTAT
*
120777597 ATAA-ATAT
1 ATAACTTAT
*
120777605 ATAACTTAC
1 ATAACTTAT
*
120777614 ATAACTTAC
1 ATAACTTAT
120777623 ATAA
1 ATAA
120777627 TACTTAAATA
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
7 7 0.08
8 6 0.07
9 78 0.86
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (9 bp):
ATAACTTAT
Found at i:120777546 original size:18 final size:18
Alignment explanation
Indices: 120777509--120777731 Score: 144
Period size: 18 Copynumber: 12.7 Consensus size: 18
120777499 ATTTGATATC
*
120777509 ATAACTTATATAAC--AT
1 ATAACTTACATAACTTAT
120777525 ATAACTTACATAACTTAT
1 ATAACTTACATAACTTAT
*
120777543 ATAACATACATAACTTAT
1 ATAACTTACATAACTTAT
*
120777561 ATAACATACATAACTTAT
1 ATAACTTACATAACTTAT
* *
120777579 ATAACTTATATAACTTAG
1 ATAACTTACATAACTTAT
* * *
120777597 ATAA-ATATATAACTTAC
1 ATAACTTACATAACTTAT
*
120777614 ATAACTTACATAATACTTAA
1 ATAACTTACAT-A-ACTTAT
*
120777634 ATATA-TT---TTA--TAT
1 ATA-ACTTACATAACTTAT
* *
120777647 CATAATTTACATAACTTAC
1 -ATAACTTACATAACTTAT
* *
120777666 ATAACTTAGATAA-ATAT
1 ATAACTTACATAACTTAT
* *
120777683 ATAATTTACATAA-ATAT
1 ATAACTTACATAACTTAT
* * * *
120777700 ATATCATATCATAAATTAC
1 ATAACTTA-CATAACTTAT
120777719 ATAACTTACATAA
1 ATAACTTACATAA
120777732 TACTTAAATA
Statistics
Matches: 165, Mismatches: 27, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
13 3 0.02
14 5 0.03
15 1 0.01
16 13 0.08
17 40 0.24
18 81 0.49
19 11 0.07
20 10 0.06
21 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
ATAACTTACATAACTTAT
Found at i:120777658 original size:105 final size:105
Alignment explanation
Indices: 120777549--120777755 Score: 274
Period size: 105 Copynumber: 2.0 Consensus size: 105
120777539 TTATATAACA
* * * * *
120777549 TACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATA-AATAT-ATAACTT
1 TACATAACTTACATAACATACATAA-ATATATAACTTACATAA-ATAGATATAATATCATAAATT
* *
120777612 ACATAACTTACATAATACTTAAATATATTTTATATCATAATT
64 ACATAACTTACATAATACTTAAATATATATCATATCATAATT
* * * * *
120777654 TACATAACTTACATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATAAATTAC
1 TACATAACTTACATAACATACATAAATATATAACTTACATAAATAGATATAATATCATAAATTAC
120777719 ATAACTTACATAATACTTAAATATATATCATATCATA
66 ATAACTTACATAATACTTAAATATATATCATATCATA
120777756 CATAACTAGT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
103 5 0.06
104 18 0.20
105 65 0.74
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (105 bp):
TACATAACTTACATAACATACATAAATATATAACTTACATAAATAGATATAATATCATAAATTAC
ATAACTTACATAATACTTAAATATATATCATATCATAATT
Found at i:120777659 original size:9 final size:9
Alignment explanation
Indices: 120777647--120777732 Score: 50
Period size: 9 Copynumber: 9.7 Consensus size: 9
120777637 TATTTTATAT
120777647 CATAATTTA
1 CATAATTTA
*
120777656 CATAACTTA
1 CATAATTTA
*
120777665 CATAACTTA
1 CATAATTTA
* *
120777674 GATAA-ATA
1 CATAATTTA
*
120777682 TATAATTTA
1 CATAATTTA
*
120777691 CATAAATATA
1 CAT-AATTTA
* * *
120777701 TATCATAT-
1 CATAATTTA
*
120777709 CATAAATTA
1 CATAATTTA
*
120777718 CATAACTTA
1 CATAATTTA
120777727 CATAAT
1 CATAAT
120777733 ACTTAAATAT
Statistics
Matches: 59, Mismatches: 15, Indels: 6
0.74 0.19 0.08
Matches are distributed among these distances:
8 10 0.17
9 42 0.71
10 7 0.12
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (9 bp):
CATAATTTA
Found at i:120777670 original size:78 final size:80
Alignment explanation
Indices: 120777508--120777731 Score: 242
Period size: 78 Copynumber: 2.8 Consensus size: 80
120777498 TATTTGATAT
* * * *
120777508 CATAACTTATAT-AACATATAACTTACATAACTTATATAACATACATAACTTATATAACATACAT
1 CATAACTTAGATAAATATATAACTTACATAACTTACATAACATACATAAATTATATAACATACAT
*
120777572 AACTTATATAACTTA
66 AACTTACATAACTTA
* * ***
120777587 TATAACTTAGATAAATATATAACTTACATAACTTACAT-A-ATACTTAAA-TATATTTTATATCA
1 CATAACTTAGATAAATATATAACTTACATAACTTACATAACATACATAAATTATATAACATA-CA
*
120777649 TAATTTACATAACTTA
65 TAACTTACATAACTTA
* * * * * *
120777665 CATAACTTAGATAAATATATAATTTACATAA-ATATATATCATATCATAAATTACATAACTTACA
1 CATAACTTAGATAAATATATAACTTACATAACTTACATAACATA-CATAAATTATATAACATACA
120777729 TAA
65 TAA
120777732 TACTTAAATA
Statistics
Matches: 117, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
77 12 0.10
78 52 0.44
79 14 0.12
80 33 0.28
81 6 0.05
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (80 bp):
CATAACTTAGATAAATATATAACTTACATAACTTACATAACATACATAAATTATATAACATACAT
AACTTACATAACTTA
Found at i:120777695 original size:17 final size:17
Alignment explanation
Indices: 120777643--120777702 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
120777633 AATATATTTT
120777643 ATATCATAATTTACATAA
1 ATAT-ATAATTTACATAA
* * * *
120777661 CTTACATAACTTAGATAA
1 -ATATATAATTTACATAA
120777679 ATATATAATTTACATAA
1 ATATATAATTTACATAA
120777696 ATATATA
1 ATATATA
120777703 TCATATCATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
17 20 0.61
18 11 0.33
19 2 0.06
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATATAATTTACATAA
Found at i:120777792 original size:105 final size:102
Alignment explanation
Indices: 120777601--120777805 Score: 234
Period size: 105 Copynumber: 2.0 Consensus size: 102
120777591 ACTTAGATAA
* * * *
120777601 ATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTAC
1 ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
* * *
120777666 ATAACTTAGATAAATATATAATTTACATAAATATATATC
66 AAAACTTACATAAATACATAA--TACATAAATATATATC
**
120777705 ATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACA-TAAC-TAGTTT
1 ATAT-ATAAATTACATAACTTACATAATACTTAAATATATATCATATCATA-ATTAACATAACTT
* * * *
120777768 ACAAAATTTACTTAACTTACATAATACATAAATCTATA
64 ACAAAACTTACATAA-ATACATAATACATAAATATATA
120777806 GTCGAAAATC
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
103 13 0.15
104 19 0.22
105 52 0.61
106 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (102 bp):
ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
AAAACTTACATAAATACATAATACATAAATATATATC
Found at i:120783341 original size:21 final size:21
Alignment explanation
Indices: 120783308--120783358 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
120783298 ACAACTTAGA
*
120783308 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
120783329 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
120783350 GCAGAGGCA
1 GCAGAGGCA
120783359 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:120783658 original size:31 final size:31
Alignment explanation
Indices: 120783612--120783678 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
120783602 TGGTTGTATT
* *
120783612 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
120783643 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
120783674 TTTTA
1 TTTTA
120783679 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:120783905 original size:43 final size:43
Alignment explanation
Indices: 120783752--120784116 Score: 613
Period size: 43 Copynumber: 8.7 Consensus size: 43
120783742 GTAAAAAAAG
*
120783752 CGCCGCTAAAAGCCTTGA-CTTTAGCGGCGC-TTTCACACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
120783793 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120783836 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120783880 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120783923 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120783966 CGCCGCTAAAAG-C-TGACCTTTAGCGGCGC-TTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120784006 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
120784049 CGCCGCTAAAAGGCTGGACCTTTAGCGGCGCTTGT-CC-C--A
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120784088 CGCCGCTAAAAGCCTTGACCTTTAGCGGC
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGC
120784117 ATTTTTTTCC
Statistics
Matches: 310, Mismatches: 8, Indels: 14
0.93 0.02 0.04
Matches are distributed among these distances:
39 28 0.09
40 23 0.07
41 36 0.12
42 31 0.10
43 150 0.48
44 42 0.14
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:120784053 original size:126 final size:128
Alignment explanation
Indices: 120783752--120784116 Score: 611
Period size: 126 Copynumber: 2.9 Consensus size: 128
120783742 GTAAAAAAAG
*
120783752 CGCCGCTAAAAGCCTTGA-CTTTAGCGGCGC-TTTCACACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
120783815 TAGCGGCGCTTTTACCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
66 TAGCGGCGCTTTT-CCACAAACGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
120783880 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
120783945 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAAG-C-TGACCTTTAGCGGCGC-TTTCCCACAAA
66 TAGCGGCGCTTTT-CCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
120784006 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGGCTGGACCTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
*
120784071 TAGCGGCGCTTGTCC-C--ACGCCGCTAAAAGCCTTGACCTTTAGCGGC
66 TAGCGGCGCTTTTCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGC
120784117 ATTTTTTTCC
Statistics
Matches: 228, Mismatches: 5, Indels: 12
0.93 0.02 0.05
Matches are distributed among these distances:
122 13 0.06
123 1 0.00
124 15 0.07
125 2 0.01
126 86 0.38
127 16 0.07
128 19 0.08
129 17 0.07
130 59 0.26
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (128 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCGCTTTTCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:120784892 original size:12 final size:12
Alignment explanation
Indices: 120784875--120784910 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
120784865 ATTCATTTGA
120784875 CATTCATGCATT
1 CATTCATGCATT
120784887 CATTCATGCATT
1 CATTCATGCATT
*
120784899 CATTCATACATT
1 CATTCATGCATT
120784911 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:120793412 original size:75 final size:74
Alignment explanation
Indices: 120793197--120793596 Score: 502
Period size: 75 Copynumber: 5.3 Consensus size: 74
120793187 TCGATTTCTG
* * *
120793197 CTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTC
1 CTTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---
*
120793262 ACATGCTGAGGT-
62 ACACGCTGAGGTA
***
120793274 CTTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 CTTTTCAATTTCTGTT--TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
120793339 CACGCTGAGGTA
63 CACGCTGAGGTA
* *
120793351 TTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 CTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACA
120793416 CGCTGAGGTA
65 CGCTGAGGTA
* *
120793426 TTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 CTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACA
120793491 CGCTGAGGTA
65 CGCTGAGGTA
* * * * * *
120793501 -ATTTCAATTTTTGTTTATC-AAAAATTAACTCATATTGCGAGAGGTGGGTTAAGCCTCGGCTCA
1 CTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---A
*
120793564 CATGCTGAGGT-
63 CACGCTGAGGTA
120793575 CTTTTCAATTTCTGTTTTTCAA
1 CTTTTCAATTTCTGTTTTTCAA
120793597 TTTCTGTTCA
Statistics
Matches: 290, Mismatches: 24, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
72 2 0.01
73 35 0.12
74 15 0.05
75 157 0.54
76 12 0.04
77 28 0.10
78 39 0.13
79 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (74 bp):
CTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACAC
GCTGAGGTA
Found at i:120793595 original size:14 final size:14
Alignment explanation
Indices: 120793576--120793604 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
120793566 TGCTGAGGTC
120793576 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
120793590 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
120793604 T
1 T
120793605 CATAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:120793657 original size:240 final size:239
Alignment explanation
Indices: 120793371--120793838 Score: 742
Period size: 240 Copynumber: 2.0 Consensus size: 239
120793361 TCTGTTTTTC
*
120793371 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
*
120793436 TCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
66 TCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTA
* * * * * * * *
120793501 ATTTCAATTTTTGTT-T-ATCAAAAATTAACTCATATTGCGAGAGGTGGGTTAAGCCTCGGCTCA
130 ATTGCAATTTCTATTGTCA-AAAAAATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCGGCTCA
* *
120793564 CATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCATAAA
194 CACGCTGAGGTATTTTCAATTTCTG-TTTTCAATTTCTGTTCATAAA
120793611 AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
* *
120793676 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACATGTTGAGGTAA
66 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTAA
* * *
120793741 TTGCAATTTCTATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACG
131 TTGCAATTTCTATTGTCAAAAAAATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCGGCTCACA
120793806 CGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
196 CGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
120793839 ACGTTGTTCA
Statistics
Matches: 209, Mismatches: 17, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
239 73 0.35
240 135 0.65
241 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (239 bp):
AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTAA
TTGCAATTTCTATTGTCAAAAAAATCAACTCATATTGCAAGAAGTGAGTTAAGCCTCGGCTCACA
CGCTGAGGTATTTTCAATTTCTGTTTTCAATTTCTGTTCATAAA
Found at i:120793700 original size:92 final size:90
Alignment explanation
Indices: 120793520--120793700 Score: 202
Period size: 92 Copynumber: 2.0 Consensus size: 90
120793510 TTTGTTTATC
* * * * *
120793520 AAAAATTAACTCATATTGCGAGAGGTGGGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGAGAGAGGTGAGTTAAGCCTCGG--CACACGCTGAGGTCTTTTAAATT
** ***
120793585 TCTGTTTTTCAATTTCTGTTCATAAAA
64 TCTGTTTTTCAAAATCAACTCATAAAA
* *
120793612 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAAATT
1 AAAAATCAACTCATATTGAGAGAGGTGAGTTAAGCCTC-GGCACACGCTGAGGT-CTTTTAAATT
120793676 TCTGTTTTTCAAAAATCAACTCATA
64 TCTGTTTTTC-AAAATCAACTCATA
120793701 TTGCGAGAGG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
90 11 0.15
91 18 0.24
92 43 0.58
93 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (90 bp):
AAAAATCAACTCATATTGAGAGAGGTGAGTTAAGCCTCGGCACACGCTGAGGTCTTTTAAATTTC
TGTTTTTCAAAATCAACTCATAAAA
Found at i:120793713 original size:74 final size:73
Alignment explanation
Indices: 120793611--120793832 Score: 259
Period size: 74 Copynumber: 3.0 Consensus size: 73
120793601 TGTTCATAAA
* *
120793611 AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTA-TTTTCAATT
120793676 TCTGTTTTTC
64 TCTGTTTTTC
* * * *
120793686 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACATGTTGAGGTAATTGCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GACACGCTGAGGTATTTTCAATTT
* *
120793750 CT-ATTGTC
65 CTGTTTTTC
* * * *
120793758 AAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGCGCTGAGGTATTTTCAA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTCAA
120793823 TTTCTGTTTT
62 TTTCTGTTTT
120793833 CAATTTACGT
Statistics
Matches: 122, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
72 4 0.03
73 11 0.09
74 85 0.70
76 20 0.16
77 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:120793978 original size:140 final size:140
Alignment explanation
Indices: 120793761--120794538 Score: 1344
Period size: 140 Copynumber: 5.5 Consensus size: 140
120793751 TATTGTCAAA
** * *
120793761 AAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTC-GGCTCACGCGCTGAGGTATTTTCAATT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCA--CGCTGAGGTATTTTCAATT
*
120793825 TCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAA
63 TCTTTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAA
120793890 TTTCTACTTTTTC
128 TTTCTACTTTTTC
*
120793903 AAAATCAGCTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
120793968 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
120794033 CTACTTTTTC
131 CTACTTTTTC
*
120794043 AAAATCAGCTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
*
120794108 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGTGAGAGGTGGGTTGAACCTTTTAATTT
66 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
120794173 CTACTTTTTC
131 CTACTTTTTC
120794183 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
* *
120794248 GTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTT
66 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
120794313 CTACTTTTTC
131 CTACTTTTTC
*
120794323 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
* *
120794388 ATTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
120794453 CTACTTTTTC
131 CTACTTTTTC
*
120794463 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCATATGCTGAGGTATTTTCAATT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TC--ACGCTGAGGTATTTTCAATT
*
120794527 TCTGTCTTTCAA
63 TCT-TTTTTCAA
120794539 AAAAAAAATT
Statistics
Matches: 612, Mismatches: 19, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
139 1 0.00
140 546 0.89
142 57 0.09
143 8 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
CTACTTTTTC
Found at i:120794392 original size:13 final size:13
Alignment explanation
Indices: 120794374--120794398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120794364 CACGCTGAGG
120794374 TATTTTCAATTTC
1 TATTTTCAATTTC
120794387 TATTTTCAATTT
1 TATTTTCAATTT
120794399 ATGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:120794564 original size:81 final size:72
Alignment explanation
Indices: 120794458--120794683 Score: 267
Period size: 72 Copynumber: 3.0 Consensus size: 72
120794448 AATTTCTACT
* ** * * * *
120794458 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCATATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
120794521 TCAATTTCTG
63 TCAATTTCTG
*
120794531 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
120794596 AATTTCAATTTCTG
59 AATTTCAATTTCTG
*
120794610 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
120794675 ATTTCTG
66 ATTTCTG
120794682 TT
1 TT
120794684 CAAAATGAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
72 69 0.51
73 1 0.01
74 4 0.03
78 4 0.03
79 23 0.17
80 4 0.03
81 30 0.22
82 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:120794656 original size:72 final size:72
Alignment explanation
Indices: 120794543--120794683 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
120794533 TTTCAAAAAA
120794543 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
120794608 TGTTTTC
66 TGTTTTC
120794615 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
120794680 TGTT
66 TGTT
120794684 CAAAATGAGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:120794668 original size:293 final size:291
Alignment explanation
Indices: 120794308--120795270 Score: 763
Period size: 275 Copynumber: 3.2 Consensus size: 291
120794298 TGAACCTTTT
* * *
120794308 AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCTGAG
1 AATTTCT-GTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
120794373 GTATTTTCAATTTCTATTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGT
65 GTAATTTCAATTTCT-TTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGT
* * *
120794438 TGAACCTTTTAATTTCTACTTTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGG
129 TGAA--TTTCAATTTCT-CTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * *
120794502 TTCATATGCTGAGGTATTTTCAATTTCTGTCTTTCAA-AAAAAAAATTCAACTCATATTGCGAGA
191 CTCACATGCTGAGGTATTTTCAATTTCTATCTTTCAATAAAAAAAA-TCAACTCATATTGCGAGA
* *
120794566 AATGAGTTGAGCCTCAAGACACGTTGAGGTA-ATTTC
255 AATGAGTTGAGCCTCAAGACACGCTGAGGTATATTTA
** *
120794602 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
* * * * * * *
120794666 GTAATTTCAATTTC-TGTTCAA--AATG-AGTT---GAGT---CTC-----GGGACACGCTGAGG
65 GTAATTTCAATTTCTTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGA-GGTG-GG
*
120794716 -T-AATTTCAATTTCTGTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT
128 TTGAATTTCAATTTCTCTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT
* * *
120794779 CACATGCTGAGGTCTTTTCAATTTCTATTTTTCAATTTCTGTTCGTAAAAAAATCAACTCATATT
193 CACATGCTGAGGTATTTTCAATTTCTATCTTTCAA-------T--AAAAAAAATCAACTCATATT
** * *
120794844 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTA
249 GCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATATTTA
** *
120794887 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
* * * *
120794952 GTAGTGTCAATTT-TTGTGTTCCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
65 GTAATTTCAATTTCTT-T-TT-CAATTTATGTTGTTCAAGAATCAACTCATATTGC--GA---GA
* * ** *
120795016 GTTGAGCCTCGGGACATGTTGAGGTAATTGCAATTTCTATTGTCAAAAAAATCAATTCATATTGC
122 ---G-G--T--GG----GTT---G-AATTTCAATTTCTCTT-TCTCAAAAATCAACTCATATTGC
* * * * ** ****
120795081 AAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTC--TGTTTCTGTTTGTCA
170 GAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATTTCTATCTTTC-AATAAAAA
* ** * * * *
120795144 AAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGACATGCTGAGGTA-ATTTC
234 AAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATATTTA
** **
120795201 AATTTCTGTTTTTCAAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
1 AATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
120795266 G-AATT
65 GTAATT
120795271 GTCGATTTTT
Statistics
Matches: 537, Mismatches: 73, Indels: 99
0.76 0.10 0.14
Matches are distributed among these distances:
274 5 0.01
275 80 0.15
277 6 0.01
278 4 0.01
279 2 0.00
282 3 0.01
284 45 0.08
285 21 0.04
286 57 0.11
287 4 0.01
288 5 0.01
289 6 0.01
291 9 0.02
292 11 0.02
293 54 0.10
294 7 0.01
295 2 0.00
298 3 0.01
303 1 0.00
305 2 0.00
308 1 0.00
310 1 0.00
313 3 0.01
314 67 0.12
315 52 0.10
317 1 0.00
318 1 0.00
319 1 0.00
323 5 0.01
324 14 0.03
325 64 0.12
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (291 bp):
AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTG
AATTTCAATTTCTCTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCAC
ATGCTGAGGTATTTTCAATTTCTATCTTTCAATAAAAAAAATCAACTCATATTGCGAGAAATGAG
TTGAGCCTCAAGACACGCTGAGGTATATTTA
Found at i:120794694 original size:49 final size:49
Alignment explanation
Indices: 120794637--120794732 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
120794627 ATATTGCGAG
*
120794637 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* **
120794686 AAATGAGTTGAGTCTCGGGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
120794733 TCTCAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:120794845 original size:90 final size:88
Alignment explanation
Indices: 120794719--120794902 Score: 257
Period size: 90 Copynumber: 2.1 Consensus size: 88
120794709 GCTGAGGTAA
*
120794719 TTTCAATTTCTGTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
1 TTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
* *
120794783 TGCTGAGGT-CTTTTCAATTTCTATT
63 CGCTGAGGTACTTTTAAATTTCTATT
120794808 TTTCAATTTCTG-TTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTTTC-T-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
120794872 GCTGAGGTATTTTTAAATTTCTGTT
64 GCTGAGGTACTTTTAAATTTCTATT
120794897 TTTCAA
1 TTTCAA
120794903 AAATCAACTC
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
88 14 0.16
89 32 0.37
90 38 0.44
91 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (88 bp):
TTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTACTTTTAAATTTCTATT
Found at i:120794926 original size:74 final size:73
Alignment explanation
Indices: 120794807--120795266 Score: 339
Period size: 74 Copynumber: 6.0 Consensus size: 73
120794797 CAATTTCTAT
* ** *
120794807 TTTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
120794872 GCTGAGGTA
65 GCTGAGGTA
* *
120794881 TTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 -TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
120794946 GCTGAGGTA
65 GCTGAGGTA
* * * * * ** * *** * *
120794955 GTGTCAATTTTTGTGTTCCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTTTTTCAA---A----AATC--AACTC-A-T-ATTGCGAGAGG--TGAGTTG
* *
120795020 AGCCTCGGGACATGTTGAGGTA
52 AGCCTCGGGACACGCTGAGGTA
* * * * * * * **
120795042 ATTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCA
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
120795106 CGTGCTGAGGTA
64 C--GCTGAGGTA
* * *
120795118 TTTTCAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAG
1 TTTTCAATTTCTG----T-TTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
120795182 GACATGCTGAGGTA
60 GACACGCTGAGGTA
* **
120795196 ATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
120795261 CTGAGG
66 CTGAGG
120795267 AATTGTCGAT
Statistics
Matches: 294, Mismatches: 65, Indels: 54
0.71 0.16 0.13
Matches are distributed among these distances:
72 2 0.01
73 63 0.21
74 71 0.24
75 14 0.05
76 23 0.08
77 1 0.00
78 22 0.07
79 4 0.01
80 37 0.13
81 2 0.01
82 6 0.02
83 3 0.01
84 1 0.00
85 7 0.02
86 2 0.01
87 34 0.12
88 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTA
Found at i:120795068 original size:161 final size:159
Alignment explanation
Indices: 120794689--120795371 Score: 742
Period size: 161 Copynumber: 4.3 Consensus size: 159
120794679 CTGTTCAAAA
* * *
120794689 TGAGTTGAGTCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTCTCAAAAATCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
* * * * *
120794754 GCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTATTTTTCAATTTCT
66 GCAAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATTGTCAATTTCT-GTGTTCAATTT-T
* **
120794819 GTTCGTAAAAAAATCAACTCATATTGCGAGAGG
128 GTT-TTTCAAAAATCAACTCATATTGCGAGAGG
* *
120794852 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATAT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTCTGTTTTTCAAAAATCAACTCATAT
* ** * *
120794917 TGCGAGAGGTGAGTTGAGCCTCGGGGCAC-GCTGAGGTAGTGTCAATTTTTGTGTTCCAATTTAT
65 TGCAAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTGTCAATTTCTGTGTT-CAATTT-T
120794981 GTTTTTCAAAAATCAACTCATATTGCGAGAGG
128 GTTTTTCAAAAATCAACTCATATTGCGAGAGG
* * * * * * *
120795013 TGAGTTGAGCCTCGGGACATGTTGAGGTAATTGCAATTTCT-ATTGTCAAAAAAATCAATTCATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC--AAAAATCAACTCATA
* *
120795077 TTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTCTGT-TTC-----T
64 TTGCAAGAGGTGAGTTGAGCCTCGGCTCAC-TGCTGAGGTATTGTCAATTTCTGTGTTCAATTTT
* *
120795136 GTTTGTC-AAAATCAACTCATATTACGAGAGG
128 GTTTTTCAAAAATCAACTCATATTGCGAGAGG
* *
120795167 TGAGTTGAGCTTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
* ** * * * * *
120795232 GTAAGAGGTGAGTTGAGCCTCGGGACAC-GCTGAGGAATTGTCGATTTTTGTGTTTTAA-TTT-C
66 GCAAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTGTCAATTTCTGTG-TTCAATTTTGT
***** *
120795294 AAAAAAATAAATCAACTCATATTGTGAGAGG
130 TTTTCAA-AAATCAACTCATATTGCGAGAGG
* * *
120795325 TGAATTGAGCCTCAGGACACGCTCAGGTATTTTCAATTTCTGTTTTT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTT
120795372 TTCCAATTTC
Statistics
Matches: 441, Mismatches: 64, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
151 19 0.04
153 42 0.10
154 60 0.14
155 11 0.02
157 2 0.00
158 63 0.14
159 4 0.01
160 9 0.02
161 96 0.22
162 29 0.07
163 47 0.11
164 59 0.13
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (159 bp):
TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
GCAAGAGGTGAGTTGAGCCTCGGCTCACTGCTGAGGTATTGTCAATTTCTGTGTTCAATTTTGTT
TTTCAAAAATCAACTCATATTGCGAGAGG
Found at i:120795243 original size:73 final size:73
Alignment explanation
Indices: 120794973--120795270 Score: 332
Period size: 73 Copynumber: 4.0 Consensus size: 73
120794963 TTTTGTGTTC
* * *
120794973 CAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGTTGA
1 CAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGCTGA
*
120795038 GGTAATTG
66 GGTAATTT
* * * * * *
120795046 CAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCGGCTCACGTG
1 CAATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG--GACATG
*
120795110 CTGAGGTATTTT
62 CTGAGGTAATTT
* * * *
120795122 CAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGGACA
1 CAATTTCTG----T-TTT-TCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACA
120795186 TGCTGAGGTAATTT
60 TGCTGAGGTAATTT
* *
120795200 CAATTTCTGTTTTTCAAAAATCAACTCATATTGTAAGAGGTGAGTTGAGCCTCGGGACACGCTGA
1 CAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGCTGA
120795265 GG-AATT
66 GGTAATT
120795271 GTCGATTTTT
Statistics
Matches: 185, Mismatches: 28, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
72 10 0.05
73 55 0.30
74 38 0.21
76 21 0.11
78 24 0.13
80 33 0.18
82 2 0.01
83 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (73 bp):
CAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGCTGA
GGTAATTT
Found at i:120795380 original size:17 final size:17
Alignment explanation
Indices: 120795354--120795388 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
120795344 CGCTCAGGTA
120795354 TTTTCAATTTCTG-TTT
1 TTTTCAATTTCTGCTTT
120795370 TTTTCCAATTTCTGCTTT
1 TTTT-CAATTTCTGCTTT
120795388 T
1 T
120795389 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 9 0.53
18 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATTTCTGCTTT
Found at i:120795814 original size:75 final size:77
Alignment explanation
Indices: 120795527--120795813 Score: 370
Period size: 77 Copynumber: 3.8 Consensus size: 77
120795517 GAGTTGAGCC
* * * **
120795527 TTTT-AATTTCTGTTTTTC-AAA-AATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
* *
120795589 CGTGCTAAGCTA
66 CATGCTGAGCTA
* **
120795601 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
120795666 CATGCTGAGCTA
66 CATGCTGAGCTA
* *
120795678 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCA
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
* * *
120795743 CACGTTGAGGC-G
66 CATGCTGA-GCTA
* *
120795755 TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTACGAGAGGTGAGTTGAGTCTCGG
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
120795814 GCCATACATT
Statistics
Matches: 196, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
74 4 0.02
75 49 0.25
76 6 0.03
77 135 0.69
78 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
CATGCTGAGCTA
Found at i:120795834 original size:75 final size:76
Alignment explanation
Indices: 120795526--120795847 Score: 313
Period size: 77 Copynumber: 4.2 Consensus size: 76
120795516 TGAGTTGAGC
* * * **
120795526 CTTTT-AATTTCTGTTTTTC-AAA-AATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTTGCTC
1 CTTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGGCTC
*
120795588 ACGTGCTAAGCT
66 ACAT-CTAAGCT
* * **
120795600 ATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTC
1 CTTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGGCTC
*
120795665 ACATGCTGAGCT
66 ACAT-CTAAGCT
* *
120795677 ATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGG-T
1 CTTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGGCT
*
120795741 CACA-CGTTGAGGC-
65 CACATC--T-AAGCT
* * *
120795754 GTTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTACGAGAGGTGAGTTGAGTCTCGGGC-
1 CTTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGGCT
*
120795816 CATACAT-TAAGGT
65 C--ACATCTAAGCT
* *
120795829 CTTTTCAAATTCTGTTTTT
1 CTTTTCAATTTCTGCTTTT
120795848 AATTTCTGCT
Statistics
Matches: 218, Mismatches: 18, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
74 6 0.03
75 69 0.32
76 6 0.03
77 134 0.61
78 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (76 bp):
CTTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGGCTC
ACATCTAAGCT
Found at i:120795834 original size:152 final size:151
Alignment explanation
Indices: 120795526--120795847 Score: 350
Period size: 152 Copynumber: 2.1 Consensus size: 151
120795516 TGAGTTGAGC
* **
120795526 CTTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTTGCTCAC
1 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
** **
120795590 GTGCTAAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGA
66 ACGCTAAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTACGAGAGGTGAGTTGA
** *
120795655 GCCTTTGCTCACATGCTGAGCT
131 GCCTGGGCTCACAT-CTAAGCT
* * * * *
120795677 ATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTC
1 CTTTTCAATTTCTGTTTTTC-AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTC
* * *
120795742 ACACGTTGAGGC-GTTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTACGAGAGGTGAGT
64 ACACGCT-AAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTACGAGAGGTGAGT
* *
120795804 TGAGTCTCGGGC-CATACAT-TAAGGT
128 TGAGCCT-GGGCTC--ACATCTAAGCT
*
120795829 CTTTTCAAATTCTGTTTTT
1 CTTTTCAATTTCTGTTTTT
120795848 AATTTCTGCT
Statistics
Matches: 141, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
151 4 0.03
152 65 0.46
153 8 0.06
154 61 0.43
155 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (151 bp):
CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
ACGCTAAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTACGAGAGGTGAGTTGA
GCCTGGGCTCACATCTAAGCT
Found at i:120795860 original size:14 final size:13
Alignment explanation
Indices: 120795838--120795874 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
120795828 TCTTTTCAAA
120795838 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
*
120795851 TTCTGCTTTTCAAT
1 TTCTG-TTTTTAAT
120795865 TTCTGTTTTT
1 TTCTGTTTTT
120795875 TCAATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.11, C:0.14, G:0.08, T:0.68
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:120796675 original size:30 final size:30
Alignment explanation
Indices: 120796639--120796783 Score: 168
Period size: 30 Copynumber: 4.8 Consensus size: 30
120796629 ACTTTTCTCA
*
120796639 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
120796669 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* * *
120796699 ATTAGCTACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
120796729 ACTAGCCACA-CTTACTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
120796759 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
120796784 CTTGTACCTA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
29 3 0.03
30 94 0.97
ACGTcount: A:0.28, C:0.47, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:120797001 original size:16 final size:16
Alignment explanation
Indices: 120796961--120797001 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
120796951 AGAAGAGTTA
120796961 TTGTGAAGGCTAGTTTT
1 TTGTGAA-GCTAGTTTT
*
120796978 TTGAGAAGCTAGTTTT
1 TTGTGAAGCTAGTTTT
*
120796994 TTTTGAAG
1 TTGTGAAG
120797002 ATTAATCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.22, C:0.05, G:0.27, T:0.46
Consensus pattern (16 bp):
TTGTGAAGCTAGTTTT
Found at i:120797301 original size:23 final size:23
Alignment explanation
Indices: 120797274--120797403 Score: 81
Period size: 25 Copynumber: 5.5 Consensus size: 23
120797264 CCTTTTTTGT
120797274 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATATTA
* *
120797297 TATTA-TATATATTCTT-TTAATA
1 TATTATTATAT-TTCTTAATATTA
* *
120797319 TATTAGGTATATTT-TAAAT-TCTA
1 TATTA-TTATATTTCTTAATAT-TA
*
120797342 TATTATGTATATATATATT-ATATTA
1 TATTAT-TATAT-T-TCTTAATATTA
* *
120797367 TTTTATGTATATATCTTTAATATTA
1 TATTAT-TATATTTC-TTAATATTA
120797392 TATTATTTATAT
1 TATTA-TTATAT
120797404 ATATATATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 24
0.70 0.09 0.20
Matches are distributed among these distances:
22 15 0.18
23 26 0.31
24 8 0.10
25 31 0.37
26 3 0.04
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATTATATTTCTTAATATTA
Found at i:120797356 original size:2 final size:2
Alignment explanation
Indices: 120797340--120797417 Score: 53
Period size: 2 Copynumber: 42.5 Consensus size: 2
120797330 TTTTAAATTC
* * *
120797340 TA TA T- TA TG TA TA TA TA TA T- TA TA T- TA T- TT TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
120797378 TA TC TT TA -A TA T- TA TA T- TA TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120797417 T
1 T
120797418 TTTACATGTT
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
1 7 0.12
2 52 0.88
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (2 bp):
TA
Found at i:120797394 original size:50 final size:48
Alignment explanation
Indices: 120797276--120797421 Score: 135
Period size: 48 Copynumber: 3.1 Consensus size: 48
120797266 TTTTTTGTTA
* * * *
120797276 TTAT-TATATT-TCTTAATATTATATTA-TATATAT-TCTTTTAATATA
1 TTATGTATATTCT-TTAATATTATATTATTATATATATATTATATTATT
* *
120797321 TTAGGTATATT-TTAAAT-TCTATATTATGTATATATATATTATATTATT
1 TTATGTATATTCTTTAATAT-TATATTAT-TATATATATATTATATTATT
120797369 TTATGTATATATCTTTAATATTATATTATT-TATATATATATATATATATT
1 TTATGTATAT-TCTTTAATATTATATTATTATATATATAT-TATAT-TATT
120797419 TTA
1 TTA
120797422 CATGTTATCT
Statistics
Matches: 83, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
44 1 0.01
45 14 0.17
46 7 0.08
47 7 0.08
48 26 0.31
49 7 0.08
50 20 0.24
51 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (48 bp):
TTATGTATATTCTTTAATATTATATTATTATATATATATTATATTATT
Found at i:120797415 original size:37 final size:35
Alignment explanation
Indices: 120797350--120797439 Score: 85
Period size: 37 Copynumber: 2.5 Consensus size: 35
120797340 TATATTATGT
*
120797350 ATATATATATTATATTAT-TTTATGTATATATCTTTA-
1 ATAT-TATATTAT-TTATATTTATATATATAT-TTTAC
120797386 ATATTATATTATTTATATATATATATATATATTTTAC
1 ATATTATATTATTTATAT-T-TATATATATATTTTAC
* * *
120797423 ATGTTATCTTATGTATA
1 ATATTATATTATTTATA
120797440 AATCTTAACT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.09
35 9 0.20
36 9 0.20
37 24 0.52
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (35 bp):
ATATTATATTATTTATATTTATATATATATTTTAC
Found at i:120797479 original size:25 final size:25
Alignment explanation
Indices: 120797447--120797495 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
120797437 ATAAATCTTA
**
120797447 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
120797472 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
120797496 TATTAGCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:120797673 original size:16 final size:15
Alignment explanation
Indices: 120797649--120797696 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
120797639 TAATTATTAT
*
120797649 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
120797665 TATTTTAATATTTTA
1 TATTTTAATATTTTA
120797680 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
120797696 T
1 T
120797697 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:120797684 original size:7 final size:8
Alignment explanation
Indices: 120797649--120797700 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
120797639 TAATTATTAT
*
120797649 TATTCTAA
1 TATTTTAA
*
120797657 TATTTTGA
1 TATTTTAA
120797665 TATTTTAA
1 TATTTTAA
120797673 TATTTT-A
1 TATTTTAA
120797680 TATTTTATA
1 TATTTTA-A
*
120797689 TATTTTAT
1 TATTTTAA
120797697 TATT
1 TATT
120797701 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Done.