Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 399 of 410
Found at i:120800746 original size:7 final size:7
Alignment explanation
Indices: 120800734--120800760 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
120800724 AACGCTACTG
120800734 AATATAA
1 AATATAA
120800741 AATATAA
1 AATATAA
120800748 AATATAA
1 AATATAA
120800755 AATATA
1 AATATA
120800761 TATTTAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATATAA
Found at i:120801149 original size:16 final size:16
Alignment explanation
Indices: 120801130--120801161 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
120801120 TGAAACATAA
120801130 ATAAAGAGAAAGTATT
1 ATAAAGAGAAAGTATT
120801146 ATAAAGAGAAAGTATT
1 ATAAAGAGAAAGTATT
120801162 GTGTGAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.25
Consensus pattern (16 bp):
ATAAAGAGAAAGTATT
Found at i:120811066 original size:21 final size:20
Alignment explanation
Indices: 120811037--120811075 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
120811027 GAAACCCAAA
120811037 CATATCCAACCGTATACACCCC
1 CATATCCAACC-T-TACACCCC
120811059 CATA-CCAACCTTACACC
1 CATATCCAACCTTACACC
120811076 GTGTGGGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 6 0.35
22 4 0.24
ACGTcount: A:0.33, C:0.46, G:0.03, T:0.18
Consensus pattern (20 bp):
CATATCCAACCTTACACCCC
Found at i:120811174 original size:27 final size:26
Alignment explanation
Indices: 120811137--120811250 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 26
120811127 AGCATGACTG
* *
120811137 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
120811163 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
120811191 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
120811218 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
120811245 CCAGAA
1 CCAGAA
120811251 TGCTTCCTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:120811196 original size:54 final size:54
Alignment explanation
Indices: 120811137--120811250 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
120811127 AGCATGACTG
*
120811137 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
120811191 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
120811245 CCAGAA
1 CCAGAA
120811251 TGCTTCCTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:120811396 original size:26 final size:27
Alignment explanation
Indices: 120811352--120811428 Score: 84
Period size: 29 Copynumber: 2.8 Consensus size: 27
120811342 CAAAATTAAC
** *
120811352 CCTAGGGGTATAACGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
120811378 CCTAGGGGTATAATAGTAAATTTTCCATA
1 CCTAGGGGTATAATAGT-AATTTTCCA-A
* *
120811407 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
120811429 AGCTACTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 15 0.35
27 7 0.16
28 5 0.12
29 16 0.37
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:120812908 original size:26 final size:26
Alignment explanation
Indices: 120812872--120812981 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
120812862 CATGAAATTC
120812872 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120812898 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
120812924 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
120812950 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
120812976 TTATCA
1 TTATCA
120812982 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:120816257 original size:27 final size:29
Alignment explanation
Indices: 120816212--120816273 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
120816202 TTTAGCCATT
120816212 TTTTATTTTTATTGCAATT-TAA-TTTTC
1 TTTTATTTTTATTGCAATTATAATTTTTC
* **
120816239 TTTTGTTTTTATTTTAATTACTAATTTTTC
1 TTTTATTTTTATTGCAATTA-TAATTTTTC
120816269 TTTTA
1 TTTTA
120816274 CCTTCTCCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 16 0.57
29 3 0.11
30 9 0.32
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.69
Consensus pattern (29 bp):
TTTTATTTTTATTGCAATTATAATTTTTC
Found at i:120818014 original size:16 final size:15
Alignment explanation
Indices: 120817993--120818040 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
120817983 GATGTGAATA
120817993 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
120818009 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
120818024 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
120818040 A
1 A
120818041 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:120818016 original size:24 final size:24
Alignment explanation
Indices: 120817989--120818044 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
120817979 TAATGATGTG
*
120817989 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
120818013 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
120818037 AATAATAA
1 AATAATAA
120818045 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:120818023 original size:8 final size:8
Alignment explanation
Indices: 120817989--120818040 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
120817979 TAATGATGTG
*
120817989 AATAATAA
1 AATATTAA
120817997 AATATATAA
1 AATAT-TAA
120818006 AATA-TAA
1 AATATTAA
120818013 AATATTAA
1 AATATTAA
*
120818021 AATATCAA
1 AATATTAA
*
120818029 AATATTAG
1 AATATTAA
120818037 AATA
1 AATA
120818041 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:120818222 original size:25 final size:25
Alignment explanation
Indices: 120818194--120818242 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
120818184 CGTGATAATA
**
120818194 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATACATACATAATATAGTG
120818219 TTAAAAATACATACATAATATAGT
1 TTAAAAATACATACATAATATAGT
120818243 TAAGATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:120818309 original size:25 final size:23
Alignment explanation
Indices: 120818281--120818345 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
120818271 AAAAATATAT
120818281 ATATATAAATAATATAATATTAAA
1 ATATATAAATAATATAATA-TAAA
* * *
120818305 GATATATACATAAAATAGTATAAA
1 -ATATATAAATAATATAATATAAA
*
120818329 ATATATATATATATATA
1 ATATATAAATA-ATATA
120818346 CGTAATATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 10 0.29
24 8 0.24
25 16 0.47
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (23 bp):
ATATATAAATAATATAATATAAA
Found at i:120818368 original size:56 final size:59
Alignment explanation
Indices: 120818275--120818417 Score: 143
Period size: 58 Copynumber: 2.4 Consensus size: 59
120818265 ATGTAAAAAA
*
120818275 ATATATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTATAA-AATAT
1 ATATATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTAAAAGAATAT
** * * * *
120818333 ATATATATATATACGTAATATAGA-ATTTAA-A-ATATACCTAATATATTAAAAGAATAT
1 ATATATATATATAAATAATATA-ATATTAAAGATATATACATAAAATAGTAAAAGAATAT
120818390 ATATAATATAATATTAAGA-AATATAATA
1 ATAT-ATAT-ATA-TAA-ATAATATAATA
120818418 ATAACAAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
56 16 0.23
57 10 0.14
58 29 0.42
59 5 0.07
60 9 0.13
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (59 bp):
ATATATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTAAAAGAATAT
Found at i:120818418 original size:23 final size:25
Alignment explanation
Indices: 120818375--120818420 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
120818365 TATACCTAAT
120818375 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
120818400 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
120818421 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:120818986 original size:30 final size:31
Alignment explanation
Indices: 120818916--120819060 Score: 174
Period size: 30 Copynumber: 4.8 Consensus size: 31
120818906 TAGGTACAAG
* *
120818916 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* ** * *
120818946 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
*
120818976 TGGTGGTGGAG-AAGGTCTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
*
120819006 TGGTGGTGGA-AAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
120819036 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGT
120819061 TGAGAAAAGT
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
29 2 0.02
30 98 0.98
ACGTcount: A:0.21, C:0.05, G:0.48, T:0.27
Consensus pattern (31 bp):
TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
Found at i:120823288 original size:46 final size:46
Alignment explanation
Indices: 120823221--120823396 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
120823211 ACAAGTGGCA
120823221 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
120823267 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
120823312 CATCCGAACTCGTTGATTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
120823360 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
120823397 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:120823376 original size:93 final size:93
Alignment explanation
Indices: 120823217--120823388 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
120823207 GGATACAAGT
* * *
120823217 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
120823282 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
120823310 GGCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
120823375 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
120823389 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:120831483 original size:11 final size:13
Alignment explanation
Indices: 120831467--120831498 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
120831457 ATAAATCACT
120831467 TTTTTTTTC-G-A
1 TTTTTTTTCGGAA
120831478 TTTTTTTTCGGAA
1 TTTTTTTTCGGAA
120831491 TTTTTTTT
1 TTTTTTTT
120831499 TCAAACTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
12 1 0.05
13 9 0.47
ACGTcount: A:0.09, C:0.06, G:0.09, T:0.75
Consensus pattern (13 bp):
TTTTTTTTCGGAA
Found at i:120835416 original size:26 final size:28
Alignment explanation
Indices: 120835359--120835417 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
120835349 ATTAAGAGTT
120835359 AAAATAGATTTTCTCTTTTCATTTTTAG
1 AAAATAGATTTTCTCTTTTCATTTTTAG
*
120835387 AAAATAG-TTTTC-GTTTTCTATTTTTA-
1 AAAATAGATTTTCTCTTTTC-ATTTTTAG
120835413 AAAAT
1 AAAAT
120835418 TGAAAAACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 10 0.34
27 12 0.41
28 7 0.24
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.53
Consensus pattern (28 bp):
AAAATAGATTTTCTCTTTTCATTTTTAG
Found at i:120836360 original size:14 final size:15
Alignment explanation
Indices: 120836337--120836397 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
120836327 GTTTGAATCT
*
120836337 ATATTTAAA-TAAAA
1 ATATTAAAATTAAAA
**
120836351 ATATTAAAATTAATC
1 ATATTAAAATTAAAA
*
120836366 ATATT-TAATTATAAA
1 ATATTAAAATTA-AAA
*
120836381 TTATTAAAATTAAAA
1 ATATTAAAATTAAAA
120836396 AT
1 AT
120836398 GCTTTTTCCT
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
14 13 0.37
15 17 0.49
16 5 0.14
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATTAAAATTAAAA
Found at i:120836388 original size:30 final size:30
Alignment explanation
Indices: 120836332--120836393 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
120836322 GCTAAGTTTG
120836332 AATCTATATTTAAATAAAAATATTAAAATT
1 AATCTATATTTAAATAAAAATATTAAAATT
* *
120836362 AATC-ATATTTAATTATAAATTATTAAAATT
1 AATCTATATTTAAATA-AAAATATTAAAATT
120836392 AA
1 AA
120836394 AAATGCTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
AATCTATATTTAAATAAAAATATTAAAATT
Found at i:120839284 original size:3 final size:3
Alignment explanation
Indices: 120839252--120839393 Score: 81
Period size: 3 Copynumber: 49.3 Consensus size: 3
120839242 TGCTTTAACG
* * *
120839252 TTA TTA CTA TT- TTC TTA TCA TTA TTA -TA TTA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
120839297 TTA -TA TTTA GTA TTA TCT- TTA ATA TTA -TA TT- TCTA TTA TTA -TA
1 TTA TTA -TTA TTA TTA T-TA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * *
120839340 TTTA TTA TTA TCTA TTA CT- TTA TTT TTA TTT TTA TT- TTA ATA TTA
1 -TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
120839385 TTA -TA TTA T
1 TTA TTA TTA T
120839394 ATTCACCTTT
Statistics
Matches: 106, Mismatches: 17, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
2 19 0.18
3 78 0.74
4 9 0.08
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:120839286 original size:17 final size:17
Alignment explanation
Indices: 120839266--120839300 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
120839256 TACTATTTTC
120839266 TTATCATTATTATATTA
1 TTATCATTATTATATTA
*
120839283 TTATTATTATTATATTA
1 TTATCATTATTATATTA
120839300 T
1 T
120839301 ATTTAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATCATTATTATATTA
Found at i:120839298 original size:14 final size:14
Alignment explanation
Indices: 120839252--120839396 Score: 72
Period size: 14 Copynumber: 10.1 Consensus size: 14
120839242 TGCTTTAACG
* * *
120839252 TTATTACTATTTTC
1 TTATTATTATTATA
*
120839266 TTATCATTATTATA
1 TTATTATTATTATA
120839280 TTATTATTATTAT-
1 TTATTATTATTATA
120839293 TATATTA-TATTTAGTA
1 T-TATTATTA-TTA-TA
*
120839309 TTATCTTTAATATTATA
1 TTA---TTATTATTATA
120839326 TT-TCTATTATTATA
1 TTAT-TATTATTATA
*
120839340 TTTATTATTA-TCTA
1 -TTATTATTATTATA
120839354 TTACTTTATT-TT-TA
1 TTA--TTATTATTATA
*
120839368 TTTTTATT-TTAATA
1 TTATTATTATT-ATA
120839382 TTATTA-TATTATA
1 TTATTATTATTATA
120839395 TT
1 TT
120839397 CACCTTTTAT
Statistics
Matches: 105, Mismatches: 9, Indels: 35
0.70 0.06 0.23
Matches are distributed among these distances:
12 7 0.07
13 13 0.12
14 55 0.52
15 16 0.15
16 2 0.02
17 4 0.04
18 6 0.06
19 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (14 bp):
TTATTATTATTATA
Found at i:120839310 original size:17 final size:17
Alignment explanation
Indices: 120839273--120839396 Score: 66
Period size: 17 Copynumber: 7.5 Consensus size: 17
120839263 TTCTTATCAT
*
120839273 TATTATATTATTATTAT
1 TATTATATTATTATTAG
120839290 TATTATATTA-TATTTAG
1 TATTATATTATTA-TTAG
* *
120839307 TATTATCTTTAATATTA-
1 TATTAT-ATTATTATTAG
*
120839324 TATT-T-CTATTATTA-
1 TATTATATTATTATTAG
*
120839338 TATT-TATTATTATCTAT
1 TATTATATTATTAT-TAG
* **
120839355 TACTT-TATTTTTATTTT
1 TA-TTATATTATTATTAG
* *
120839372 TATTTTAATATTATTA-
1 TATTATATTATTATTAG
120839388 TATTATATT
1 TATTATATT
120839397 CACCTTTTAT
Statistics
Matches: 87, Mismatches: 12, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
14 12 0.14
15 6 0.07
16 14 0.16
17 37 0.43
18 16 0.18
19 2 0.02
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (17 bp):
TATTATATTATTATTAG
Found at i:120839337 original size:38 final size:36
Alignment explanation
Indices: 120839286--120839385 Score: 107
Period size: 38 Copynumber: 2.8 Consensus size: 36
120839276 TATATTATTA
* *
120839286 TTATTATTA-TATTATATTTAGTATTATCT-TTAAT
1 TTATTTTTATTATTATATTTAATATTATCTATTAAT
* *
120839320 ATTATATTTCTATTATTATATTTATTATTATCTATTACT
1 -TTAT-TTT-TATTATTATATTTAATATTATCTATTAAT
*
120839359 TTATTTTTATTTTTAT-TTTAATATTAT
1 TTATTTTTATTATTATATTTAATATTAT
120839386 TATATTATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
35 14 0.25
36 10 0.18
37 5 0.09
38 23 0.41
39 4 0.07
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (36 bp):
TTATTTTTATTATTATATTTAATATTATCTATTAAT
Found at i:120839804 original size:47 final size:48
Alignment explanation
Indices: 120839745--120839864 Score: 124
Period size: 50 Copynumber: 2.5 Consensus size: 48
120839735 TTTAAATACC
*
120839745 ATATTA-TATACATATATTTT-A-TATCTAT-TCTTATATATTATTATTTT
1 ATATTATTATACATATATTTTCACTAT-TATCACTTAT-TATT-TTATTTT
*
120839792 -TGTTATTATACATAATATTTTCACTATTATCACTTATTATTTTATTTT
1 ATATTATTATACAT-ATATTTTCACTATTATCACTTATTATTTTATTTT
*
120839840 AATATTATTATATATATATTCTTCA
1 -ATATTATTATACATATATT-TTCA
120839865 TATATGTTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
46 4 0.07
47 7 0.11
48 14 0.23
49 13 0.21
50 23 0.38
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (48 bp):
ATATTATTATACATATATTTTCACTATTATCACTTATTATTTTATTTT
Found at i:120839928 original size:11 final size:11
Alignment explanation
Indices: 120839904--120839934 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
120839894 ATCTATTTTA
120839904 TATATATATATG
1 TATATAT-TATG
120839916 TATATATTATG
1 TATATATTATG
120839927 TATATATT
1 TATATATT
120839935 TTAACATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (11 bp):
TATATATTATG
Found at i:120852061 original size:88 final size:88
Alignment explanation
Indices: 120851881--120852093 Score: 274
Period size: 88 Copynumber: 2.4 Consensus size: 88
120851871 TTTATTTTTT
* * *
120851881 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTTTCAAAATC
1 AAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAAATC
120851946 TGCTTTTCAAATTCCTGTTTGTC
66 TGCTTTTCAAATTCCTGTTTGTC
* * **
120851969 AAAAATCAACTCATATTGTGAGAGGTAAGTTGAGCCTCAGGGCACGCTGA-GTAATTTTC-ATTT
1 AAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT-ATTTTCAAAAT
*
120852032 TTGCTTTTC-AA-TCTCTGCTTT-TC
65 CTGCTTTTCAAATTC-CTG-TTTGTC
120852055 AAAAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCT
1 --AAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCT
120852094 TGGCTCACAT
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
85 2 0.02
86 7 0.06
87 15 0.14
88 86 0.78
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (88 bp):
AAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAAATC
TGCTTTTCAAATTCCTGTTTGTC
Found at i:120852164 original size:78 final size:79
Alignment explanation
Indices: 120852049--120852196 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 79
120852039 TCAATCTCTG
** * * * *
120852049 CTTTTCAAAAAAATCAATTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACATG-CTGAGGTA
1 CTTTTCAAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTC-GAGATA
120852113 TTTTCAGTTTTTATA
65 TTTTCAGTTTTTATA
*
120852128 CTTTTC-AAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGATAT
1 CTTTTCAAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGATAT
120852192 TTTCA
66 TTTCA
120852197 AATTTTGTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
78 54 0.89
79 7 0.11
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (79 bp):
CTTTTCAAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGATAT
TTTCAGTTTTTATA
Found at i:120852312 original size:14 final size:14
Alignment explanation
Indices: 120852293--120852327 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
120852283 CGCTGAGGTA
*
120852293 TTTTCAATTTCTGT
1 TTTTCAATTTCTGC
*
120852307 TTTTCAATTTTTGC
1 TTTTCAATTTCTGC
120852321 TTTTCAA
1 TTTTCAA
120852328 AAAAGTCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:120852313 original size:102 final size:103
Alignment explanation
Indices: 120852126--120852313 Score: 265
Period size: 102 Copynumber: 1.8 Consensus size: 103
120852116 TCAGTTTTTA
* *
120852126 TACTTTTCAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGATA
1 TACTTTTCAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTCGAGATA
120852191 TTTTCAAATTTTGTTGTTCAAATTCTGTTTTTAATTTC
66 TTTTCAAATTTTGTTGTTCAAATTCTGTTTTTAATTTC
* * * * *
120852229 TACTTTTC-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACG-CTGAGGT
1 TACTTTTCAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTC-GAGAT
*
120852292 ATTTTC-AATTTCTGTTTTTCAA
65 ATTTTCAAATTT-TGTTGTTCAA
120852314 TTTTTGCTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
101 6 0.08
102 61 0.81
103 8 0.11
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (103 bp):
TACTTTTCAAAAAATCAACCCATATGGCGAGAGGTGAGTTGAGCCTCGGCTCACACGTCGAGATA
TTTTCAAATTTTGTTGTTCAAATTCTGTTTTTAATTTC
Found at i:120852399 original size:89 final size:90
Alignment explanation
Indices: 120852218--120852651 Score: 329
Period size: 83 Copynumber: 5.0 Consensus size: 90
120852208 TCAAATTCTG
* * *
120852218 TTTTT-AATTTCTACTTTTC--CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTTTCAATTTATACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
* *
120852279 CACACGCTGAGGTATTTTCAATTTCTG
64 CACACGCTGAGGTATTTTCAATTCCTA
* * * * *
120852306 TTTTTCAATTTTTGCTTTTCAAAAAAGTCAACTCCTATTGCGAGAGGTGAGTTGAGCCTCAGG-G
1 TTTTTCAATTTATACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCA
*
120852370 CACGCTGAGGTATTTTCAGTTCCTA
66 CACGCTGAGGTATTTTCAATTCCTA
* *
120852395 TTTTTCAATTTATATTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTTTCAATTTATACTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * *
120852460 GTCACATG-TCGAGGTATTTTCAAAAT-CTG
63 G-CACACGCT-GAGGTATTTTC-AATTCCTA
* * * * * *
120852489 CTTTT--A---A-A--TTTCAAAAAGACCAACTCATATGGCGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTTTCAATTTATACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCA
* * *
120852545 CATGTACTGAGCTATTTTCAATTTCTA
66 CACG--CTGAGGTATTTTCAATTCCTA
* * ** * *
120852572 -TTTT-AATGTCTGTTTTTC----AAATCAACTAATATTGTGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTTTCAATTTATACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCA
*
120852630 CACGCTGAGGTATTTTTAATTC
66 CACGCTGAGGTATTTTCAATTC
120852652 ATGTTTTCAA
Statistics
Matches: 280, Mismatches: 43, Indels: 51
0.75 0.11 0.14
Matches are distributed among these distances:
81 5 0.02
82 9 0.03
83 64 0.23
84 1 0.00
85 33 0.12
86 6 0.02
88 6 0.02
89 56 0.20
91 34 0.12
92 43 0.15
93 1 0.00
94 20 0.07
95 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (90 bp):
TTTTTCAATTTATACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCA
CACGCTGAGGTATTTTCAATTCCTA
Found at i:120852802 original size:129 final size:124
Alignment explanation
Indices: 120852572--120852822 Score: 328
Period size: 129 Copynumber: 2.0 Consensus size: 124
120852562 TCAATTTCTA
* * *
120852572 TTTTAATGTCTGTTTTTCAAATCAACTAATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 TTTTAATGTCTGTTTTTCAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCAGGACACACTG
* *
120852637 AGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 AGGCATTTTTAATTCATGTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
* * *
120852696 TTTTAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCAT
1 TTTTAATGTCTG-TTTTTC--AAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCAGG---AC
*
120852760 ATACTGAGGCATTTTTAATTTC-TGCTTTTC-AAAATCAACTCATATTACGAGAGGTGAGTTGAG
60 ACACTGAGGCATTTTTAA-TTCATG-TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
120852823 TCTCAGGTCA
Statistics
Matches: 110, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
124 11 0.10
125 6 0.05
126 2 0.02
127 33 0.30
129 50 0.45
130 8 0.07
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (124 bp):
TTTTAATGTCTGTTTTTCAAATCAACTAATATTGCGAGAAGTGAGTTGAGCCTCAGGACACACTG
AGGCATTTTTAATTCATGTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
Found at i:120852819 original size:74 final size:74
Alignment explanation
Indices: 120852696--120852865 Score: 209
Period size: 74 Copynumber: 2.3 Consensus size: 74
120852686 GAGTTGAGCC
* * *
120852696 TTTTAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCAT
1 TTTTAATTTCTG-CTTTTC-AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGG-TCAC
* *
120852760 ATACTGAGGCAT
63 ACACTGAAGCAT
* * *
120852772 TTTTAATTTCTGCTTTTCAAAATCAACTCATATTACGAGAGGTGAGTTGAGTCTCAGGTCACACG
1 TTTTAATTTCTGCTTTTCAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGTCACACA
*
120852837 CTGAAGTAT
66 CTGAAGCAT
120852846 TTTTAAATTT-TGCTTTTCAA
1 TTTT-AATTTCTGCTTTTCAA
120852866 TTTCTACTTT
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
74 59 0.71
75 12 0.14
76 12 0.14
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (74 bp):
TTTTAATTTCTGCTTTTCAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGTCACACA
CTGAAGCAT
Found at i:120852989 original size:85 final size:85
Alignment explanation
Indices: 120852772--120852999 Score: 262
Period size: 89 Copynumber: 2.6 Consensus size: 85
120852762 ACTGAGGCAT
* *
120852772 TTTTAATTTCTGCTTTTCAAAATCAACTCATATTACGAGAGGTGAGTTGAGTCTCAGGTCACACG
1 TTTTAATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACG
** *
120852837 CTGAAGTATTTTTAAATTTTGC
64 CTGAAGTATTTCCAAATTTCGC
* * * *
120852859 TTTTCAATTTCTACTTTTCCAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAT
1 TTTT-AATTTCT-GTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACAC
* * *
120852923 GCTGAGGTA-TTCCCAATTTCGG
63 GCTGAAGTATTTCCAAATTTCGC
*
120852945 TTTTAATTTATGTTTTCAAAAATCAAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTAATTTCTGTTTTC-AAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT
120853000 TTTAATTTCT
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
83 1 0.01
84 10 0.08
85 35 0.29
86 12 0.10
87 14 0.12
88 11 0.09
89 38 0.31
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (85 bp):
TTTTAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCT
GAAGTATTTCCAAATTTCGC
Found at i:120854943 original size:14 final size:14
Alignment explanation
Indices: 120854933--120855014 Score: 59
Period size: 14 Copynumber: 5.9 Consensus size: 14
120854923 TACTATTTTC
120854933 TTATCATTATTATA
1 TTATCATTATTATA
*
120854947 TTATTATTATTATA
1 TTATCATTATTATA
120854961 TTAT-A-T-TTAGTA
1 TTATCATTATTA-TA
*
120854973 TTATCTTTAATATTATA
1 TTATC---ATTATTATA
120854990 TT-TCTATTATTATA
1 TTATC-ATTATTATA
120855004 TT-T-ATTATTAT
1 TTATCATTATTAT
120855015 CTATTACTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
11 3 0.05
12 15 0.25
13 1 0.02
14 29 0.49
16 3 0.05
17 5 0.08
18 3 0.05
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (14 bp):
TTATCATTATTATA
Found at i:120854951 original size:3 final size:3
Alignment explanation
Indices: 120854919--120855057 Score: 66
Period size: 3 Copynumber: 48.3 Consensus size: 3
120854909 TGCTTTAACG
* * *
120854919 TTA TTA CTA TT- TTC TTA TCA TTA TTA -TA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
120854964 -TA TTTA GTA TTA TCT- TTA ATA TTA -TA TT- TCTA TTA TTA -TA TTTA
1 TTA -TTA TTA TTA T-TA TTA TTA TTA TTA TTA T-TA TTA TTA TTA -TTA
* * * * *
120855008 TTA TTA TCTA TTA CT- TTA TTT TTA TTT TTA TT- TCA ATA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
120855052 -TA TTA T
1 TTA TTA T
120855058 ATTCACCTTT
Statistics
Matches: 101, Mismatches: 19, Indels: 32
0.66 0.12 0.21
Matches are distributed among these distances:
2 18 0.18
3 74 0.73
4 9 0.09
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:120854976 original size:12 final size:12
Alignment explanation
Indices: 120854938--120855014 Score: 74
Period size: 12 Copynumber: 6.7 Consensus size: 12
120854928 TTTTCTTATC
120854938 ATTATTATA-TT
1 ATTATTATATTT
120854949 ATTA-T-TA-TT
1 ATTATTATATTT
120854958 A-TATTATATTT
1 ATTATTATATTT
* *
120854969 AGTATTATCTTT
1 ATTATTATATTT
*
120854981 AATATTATATTTCT
1 ATTATTATA-TT-T
120854995 ATTATTATATTT
1 ATTATTATATTT
120855007 ATTATTAT
1 ATTATTAT
120855015 CTATTACTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
8 2 0.04
9 6 0.11
10 3 0.05
11 7 0.12
12 25 0.45
13 4 0.07
14 9 0.16
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (12 bp):
ATTATTATATTT
Found at i:120854986 original size:38 final size:40
Alignment explanation
Indices: 120854940--120855039 Score: 113
Period size: 38 Copynumber: 2.6 Consensus size: 40
120854930 TTCTTATCAT
120854940 TATT-ATATTATTATTATTA-TATTATATTTAGTATTATC
1 TATTAATATTATTATTATTATTATTATATTTAGTATTATC
*
120854978 T-TTAATATTA-TATT-TCTATTATTATATTTATTATTATC
1 TATTAATATTATTATTAT-TATTATTATATTTAGTATTATC
* * *
120855016 TATTACT-TTATTTTTATTTTTATT
1 TATTAATATTATTATTATTATTATT
120855040 TCAATATTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
36 1 0.02
37 8 0.15
38 29 0.56
39 13 0.25
40 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (40 bp):
TATTAATATTATTATTATTATTATTATATTTAGTATTATC
Found at i:120855000 original size:26 final size:23
Alignment explanation
Indices: 120854940--120855014 Score: 71
Period size: 26 Copynumber: 3.0 Consensus size: 23
120854930 TTCTTATCAT
120854940 TATTATATTATTATTATT-ATATTA
1 TATT-TATTATTATT-TTAATATTA
*
120854964 TATTTAGTATTATCTTTAATATTA
1 TATTTATTATTAT-TTTAATATTA
*
120854988 TATTTCTATTATTATATTTATTATTA
1 TA-TT-TATTATTAT-TTTAATATTA
120855014 T
1 T
120855015 CTATTACTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
23 10 0.23
24 13 0.30
25 2 0.05
26 18 0.42
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (23 bp):
TATTTATTATTATTTTAATATTA
Found at i:120855121 original size:93 final size:93
Alignment explanation
Indices: 120854951--120855125 Score: 205
Period size: 93 Copynumber: 1.9 Consensus size: 93
120854941 ATTATATTAT
* * * * *
120854951 TATTATTATATTATATTTAGTATTATCTTTAATATTATATTTCTATTATTATATTTATTATTATC
1 TATTATTATATTATATTCACTATTATATTTAATATTATATTACTATTATTATATTTATTATTATA
*
120855016 TATTACTTTATTTTTATTTTTATTTCAA
66 TATTACTGTATTTTTATTTTTATTTCAA
* * *
120855044 TATTATTATATTATATTCACCTTTTATATTTTATA-T-TATTACTATTACTTATCTTTACTTA-T
1 TATTATTATATTATATTCA-CTATTATATTTAATATTATATTACTATTA-TTATATTTA-TTATT
120855106 ATATATATAC-GTATTTTTAT
63 ATATAT-TACTGTATTTTTAT
120855126 GTACATATAG
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
92 10 0.14
93 42 0.61
94 17 0.25
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (93 bp):
TATTATTATATTATATTCACTATTATATTTAATATTATATTACTATTATTATATTTATTATTATA
TATTACTGTATTTTTATTTTTATTTCAA
Found at i:120855167 original size:16 final size:17
Alignment explanation
Indices: 120855146--120855181 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
120855136 CTTTTATATA
120855146 GTTTTTT-TATTACTTT
1 GTTTTTTATATTACTTT
*
120855162 GTTTTTTATTTTACTTT
1 GTTTTTTATATTACTTT
120855179 GTT
1 GTT
120855182 ATATTTGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.11, C:0.06, G:0.08, T:0.75
Consensus pattern (17 bp):
GTTTTTTATATTACTTT
Found at i:120855520 original size:22 final size:22
Alignment explanation
Indices: 120855495--120855659 Score: 72
Period size: 22 Copynumber: 7.1 Consensus size: 22
120855485 CTTATTATTT
120855495 TATTTTAATATTATTATATATA
1 TATTTTAATATTATTATATATA
*
120855517 TATTCTTCATATATGTTATGTACATACT-
1 TATT-TT-A-ATA--TTAT-TATATA-TA
*
120855545 TTTTTTCAATATCTATTATATATA
1 TATTTT-AATAT-TATTATATATA
*
120855569 TA-TTTATATATATATATATATGTA
1 TATTTTA-ATAT-TAT-TATATATA
* *
120855593 TATATGT-ATA-TATTATGTATA
1 TAT-TTTAATATTATTATATATA
* *
120855614 TATTTTAACATTACTAGT-TATA
1 TATTTTAATATTATTA-TATATA
* *
120855636 TATTTTTACTA-TATTATGTATA
1 TA-TTTTAATATTATTATATATA
120855658 TA
1 TA
120855660 CTTCAAACAC
Statistics
Matches: 110, Mismatches: 15, Indels: 36
0.68 0.09 0.22
Matches are distributed among these distances:
20 2 0.02
21 12 0.11
22 28 0.25
23 20 0.18
24 20 0.18
25 6 0.05
26 5 0.05
27 8 0.07
28 8 0.07
29 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (22 bp):
TATTTTAATATTATTATATATA
Found at i:120855566 original size:2 final size:2
Alignment explanation
Indices: 120855561--120855616 Score: 69
Period size: 2 Copynumber: 28.5 Consensus size: 2
120855551 CAATATCTAT
* * *
120855561 TA TA TA TA TA TT TA TA TA TA TA TA TA TA TG TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
120855603 TA T- TA TG TA TA TA T
1 TA TA TA TA TA TA TA T
120855617 TTTAACATTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (2 bp):
TA
Found at i:120855691 original size:23 final size:24
Alignment explanation
Indices: 120855643--120855695 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
120855633 ATATATTTTT
120855643 ACTATATTATGTATATACTTCAAAC
1 ACTATATTATGTATATA-TTCAAAC
*
120855668 ACTATA-TATAGTATAT-TTCTAAC
1 ACTATATTAT-GTATATATTCAAAC
120855691 ACTAT
1 ACTAT
120855696 TACTATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 12 0.46
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (24 bp):
ACTATATTATGTATATATTCAAAC
Found at i:120856970 original size:22 final size:22
Alignment explanation
Indices: 120856919--120856979 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
120856909 ATAAGTAAAT
* *
120856919 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
120856940 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
120856962 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
120856980 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:120857078 original size:3 final size:3
Alignment explanation
Indices: 120857070--120857095 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
120857060 AAAGTAGTGC
120857070 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
120857096 TTAAAATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:120857614 original size:25 final size:25
Alignment explanation
Indices: 120857571--120857626 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
120857561 ATCTCAAAAA
*
120857571 AAAAGAAAAATCCCCTCTTGAATCTC
1 AAAA-AAAAATCCCCTCTTAAATCTC
* *
120857597 AAAAAAAAATCTCTTCTTAAATCTC
1 AAAAAAAAATCCCCTCTTAAATCTC
120857622 AAAAA
1 AAAAA
120857627 TTTCTTCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 23 0.85
26 4 0.15
ACGTcount: A:0.50, C:0.21, G:0.04, T:0.25
Consensus pattern (25 bp):
AAAAAAAAATCCCCTCTTAAATCTC
Found at i:120857842 original size:12 final size:12
Alignment explanation
Indices: 120857821--120857855 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
120857811 GAGATTAGGT
120857821 TTTTTCTTTTTGA
1 TTTTT-TTTTTGA
120857834 -TTTTTTTTTGA
1 TTTTTTTTTTGA
120857845 TTTTTTTTTTG
1 TTTTTTTTTTG
120857856 GGTTGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.06, C:0.03, G:0.09, T:0.83
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:120857848 original size:10 final size:11
Alignment explanation
Indices: 120857822--120857853 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
120857812 AGATTAGGTT
120857822 TTTTCTTTTTGA
1 TTTT-TTTTTGA
120857834 TTTTTTTTTGA
1 TTTTTTTTTGA
120857845 TTTTTTTTT
1 TTTTTTTTT
120857854 TGGGTTGGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTGA
Found at i:120858578 original size:205 final size:205
Alignment explanation
Indices: 120858221--120858791 Score: 896
Period size: 205 Copynumber: 2.8 Consensus size: 205
120858211 GATTTGATCC
* * * * * * **
120858221 CTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACGCGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACATGAAAGCCAAATC
* * * * *
120858286 AACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTTGGATCCGCTTCAGC
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCCGCTTCAGC
* * *
120858350 ATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTACATCAAAGTGAAGATTCCAAACTTT
131 ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTACATCAAAGTGAAGATGCCAAACTTC
120858415 AATTCGTTCT
196 AATTCGTTCT
120858425 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACATGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACATGAAAGCCAAATC
*
120858490 AGCTATGTCTTCGATTTATTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCCGCTTCAGC
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCCGCTTCAGC
*
120858555 ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTC
131 ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTACATCAAAGTGAAGATGCCAAACTTC
*
120858620 GATTCGTTCT
196 AATTCGTTCT
*
120858630 CTGACGATATAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACATGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACATGAAAGCCAAATC
*
120858695 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAG-
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCCGCTTCAGC
* *
120858759 -TGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 AT-AAA-CATCTGAAGGTGAGATCTGCTATGTGT
120858792 AGCCTATTAC
Statistics
Matches: 340, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
203 1 0.00
204 66 0.19
205 273 0.80
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (205 bp):
CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCACATGAAAGCCAAATC
AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCCGCTTCAGC
ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTACATCAAAGTGAAGATGCCAAACTTC
AATTCGTTCT
Found at i:120867016 original size:15 final size:14
Alignment explanation
Indices: 120866974--120867023 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
120866964 ATAACTTTGA
*
120866974 ATGCAAATGATGTG
1 ATGCAAATGATGAG
120866988 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
120867003 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
120867017 ATGCAAA
1 ATGCAAA
120867024 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:120868877 original size:24 final size:24
Alignment explanation
Indices: 120868812--120868946 Score: 137
Period size: 25 Copynumber: 5.2 Consensus size: 24
120868802 TGGTACAAAT
120868812 TGATAATGTGTTAGGTAAATGTTCA
1 TGATAATG-GTTAGGTAAATGTTCA
*
120868837 TGATAATGGGTTAGGTAAATATTCA
1 TGATAAT-GGTTAGGTAAATGTTCA
120868862 TGATAATGGTTAGGT-AATGTTCCA
1 TGATAATGGTTAGGTAAATGTT-CA
*
120868886 TGATAATGATTAGGTAAATTGATAATGTTCA
1 TGATAATGGTTAGG-----T-A-AATGTTCA
120868917 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTT-CA
120868943 TGAT
1 TGAT
120868947 GGGCATTTCA
Statistics
Matches: 94, Mismatches: 4, Indels: 23
0.78 0.03 0.19
Matches are distributed among these distances:
23 5 0.05
24 23 0.24
25 35 0.37
26 8 0.09
27 1 0.01
29 1 0.01
31 10 0.11
32 11 0.12
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (24 bp):
TGATAATGGTTAGGTAAATGTTCA
Found at i:120868912 original size:32 final size:32
Alignment explanation
Indices: 120868876--120868936 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
120868866 AATGGTTAGG
120868876 TAATGTTCCATGATAAT-GATTAGGTAAATTGA
1 TAATGTT-CATGATAATGGATTAGGTAAATTGA
*
120868908 TAATGTTCATGATAATGGTTTAGGTAAAT
1 TAATGTTCATGATAATGGATTAGGTAAAT
120868937 GTTCCATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (32 bp):
TAATGTTCATGATAATGGATTAGGTAAATTGA
Found at i:120875886 original size:26 final size:26
Alignment explanation
Indices: 120875857--120876016 Score: 223
Period size: 26 Copynumber: 6.2 Consensus size: 26
120875847 TGGTACAAAT
120875857 TGATAATGTG-TTAGGTAAATGTTCCA
1 TGATAATG-GATTAGGTAAATGTTCCA
* *
120875883 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
120875909 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATGTTCCA
* * *
120875935 TGATAACGGATTAGGTAAATATTCTA
1 TGATAATGGATTAGGTAAATGTTCCA
*
120875961 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
120875987 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
120876013 TGAT
1 TGAT
120876017 GGGCATTTCA
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
25 1 0.01
26 116 0.99
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:120875922 original size:52 final size:52
Alignment explanation
Indices: 120875857--120876016 Score: 257
Period size: 52 Copynumber: 3.1 Consensus size: 52
120875847 TGGTACAAAT
*
120875857 TGATAATGTGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
* * *
120875909 TGATAATGGGTTAGGTAAATGTTTCATGATAACGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
* * *
120875961 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
120876013 TGAT
1 TGAT
120876017 GGGCATTTCA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 99 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
Found at i:120888071 original size:15 final size:15
Alignment explanation
Indices: 120888053--120888104 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
120888043 ATACACTAAT
120888053 ATAATAATAGTTATA
1 ATAATAATAGTTATA
* **
120888068 ATAATACTAGCAATA
1 ATAATAATAGTTATA
* *
120888083 GTAATAATTTGTTATA
1 ATAATAA-TAGTTATA
120888099 ATAATA
1 ATAATA
120888105 TATACACAAT
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (15 bp):
ATAATAATAGTTATA
Found at i:120888133 original size:2 final size:2
Alignment explanation
Indices: 120888126--120888156 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
120888116 TGGTATTTTA
*
120888126 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
120888157 CAATAGTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:120888721 original size:36 final size:36
Alignment explanation
Indices: 120888674--120888761 Score: 167
Period size: 36 Copynumber: 2.4 Consensus size: 36
120888664 GGTCGGTTCG
120888674 ACGACGTCGTTTTGGGATTTAATGGCCAACCCCAAA
1 ACGACGTCGTTTTGGGATTTAATGGCCAACCCCAAA
120888710 ACGACGTCGTTTTGGGATTTAATGGCCAACCCCAAA
1 ACGACGTCGTTTTGGGATTTAATGGCCAACCCCAAA
*
120888746 ACGACGTCATTTTGGG
1 ACGACGTCGTTTTGGG
120888762 GGGCTATAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (36 bp):
ACGACGTCGTTTTGGGATTTAATGGCCAACCCCAAA
Found at i:120892060 original size:73 final size:72
Alignment explanation
Indices: 120891868--120892100 Score: 270
Period size: 73 Copynumber: 3.2 Consensus size: 72
120891858 ATGTTTTTAT
* * * * * * * *
120891868 TTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAACCTCAAGACATGTTGAGGTAC
1 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* *
120891933 TTTCAAT
66 TTTTAAA
* * *
120891940 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACACTGAGG
1 TTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGG
120892005 TAATTTTAAA
63 TAATTTTAAA
*
120892015 TTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGG-A
1 TTCTGTTT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTA
*
120892079 ATTTTCAA
65 ATTTTAAA
120892087 TTCCTGCTTTTCAA
1 TT-CTG-TTTTCAA
120892101 TTTCTGCTTT
Statistics
Matches: 137, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
72 16 0.12
73 59 0.43
74 5 0.04
75 57 0.42
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (72 bp):
TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
TTTTAAA
Found at i:120892099 original size:14 final size:14
Alignment explanation
Indices: 120892080--120892113 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
120892070 CGCTGAGGAA
120892080 TTTTCAATTCCTGC
1 TTTTCAATTCCTGC
*
120892094 TTTTCAATTTCTGC
1 TTTTCAATTCCTGC
120892108 TTTTCA
1 TTTTCA
120892114 TAAAAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTTCAATTCCTGC
Found at i:120892210 original size:90 final size:89
Alignment explanation
Indices: 120892024--120892243 Score: 264
Period size: 90 Copynumber: 2.4 Consensus size: 89
120892014 ATTCTGTTTG
* *
120892024 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTCTCAATT
* *
120892089 CCTGCTTTTCAATTTCTGCTTTTCA
66 CCTGCTTTTCAATTTATGATTTT-A
* ** * * *
120892114 TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCATATGCTGAGGTATTCTCAG
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC--ACGCTGAGGAATTCTCAA
* *
120892179 TTTCTGTTTTTTCAATTTAT-ATTTT-
64 TTCCTG-CTTTTCAATTTATGATTTTA
* *
120892204 TCAAAAATAAACTCATATTGCAAGAGGTGAGTTGAGCCTC
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
120892244 GGGTCACATG
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
90 78 0.70
92 23 0.21
93 11 0.10
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (89 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTCTCAATT
CCTGCTTTTCAATTTATGATTTTA
Found at i:120894351 original size:16 final size:16
Alignment explanation
Indices: 120894312--120894366 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
120894302 TTATTCCCTC
*
120894312 TATTATGTATTACTAAT
1 TATTAT-TATTACTAGT
120894329 GTATTATTATTACTAGT
1 -TATTATTATTACTAGT
*
120894346 TATTATTATTTCTAG-
1 TATTATTATTACTAGT
120894361 TATTAT
1 TATTAT
120894367 CACATATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
15 6 0.17
16 14 0.40
17 9 0.26
18 6 0.17
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.56
Consensus pattern (16 bp):
TATTATTATTACTAGT
Found at i:120894619 original size:22 final size:22
Alignment explanation
Indices: 120894594--120894649 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
120894584 AATATCTTAT
120894594 ATATTATTATGTACATATTTTG
1 ATATTATTATGTACATATTTTG
* * *
120894616 ATATCATTA-GTTATATATTTTT
1 ATATTATTATG-TACATATTTTG
120894638 ATA-TATTATGTA
1 ATATTATTATGTA
120894650 TATTTCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (22 bp):
ATATTATTATGTACATATTTTG
Found at i:120895165 original size:43 final size:42
Alignment explanation
Indices: 120895045--120895372 Score: 273
Period size: 43 Copynumber: 7.6 Consensus size: 42
120895035 AAAACTTCGT
*
120895045 GGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGC
1 GGCG-TTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGC
* * * ** *
120895088 GGCGCTCTTAAAAAAACGCCGCCGAAGACCAGGACCTTTAGT
1 GGCGTTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGC
*
120895130 GGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGC
1 GGCG-TTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGC
* * * *
120895173 GACGCTTTTTAAAAAAACGCCGCTATAGACCAAGACCTTTAGC
1 GGCG-TTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGC
* * * * * *
120895216 GGCGCTTTTATAAAAAACACCGCTATAGACCTGTACTTTTAGC
1 GGCGTTTTTAT-AAAAACGCCGCTAAAGACCAGGACCTTTAGC
* * * * *
120895259 GGCGCTTTTGTAAAAAAAAGCCTC-AATAGACCAAGAACTTTAGC
1 GGCG-TTTT-TATAAAAACGCCGCTAA-AGACCAGGACCTTTAGC
* * * * **
120895303 AGCGCTTTTATAAAAAACGCCGCTATAGACCTA-TAATTTTAGC
1 GGCGTTTTTAT-AAAAACGCCGCTAAAGACC-AGGACCTTTAGC
*
120895346 GGCGCTTTTGTAAAAAAACGCCGCTAA
1 GGCG-TTTT-TATAAAAACGCCGCTAA
120895373 TTTGCCTAGT
Statistics
Matches: 224, Mismatches: 51, Indels: 19
0.76 0.17 0.06
Matches are distributed among these distances:
42 42 0.19
43 134 0.60
44 44 0.20
45 4 0.02
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
GGCGTTTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGC
Found at i:120895308 original size:87 final size:87
Alignment explanation
Indices: 120895051--120895369 Score: 326
Period size: 87 Copynumber: 3.7 Consensus size: 87
120895041 TCGTGGCGTT
* * * * * * * *
120895051 TTTTAT-AAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TCT-TAAAAAAACGCCGCCGA
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAAAGCCG-CAA
* * **
120895113 -AGACCAGGACCTTTAGTGGCG-
65 TAGACCAAGAACTTTAGCAGCGC
* * * * * * * * *
120895134 TTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTT-TAAAAAAACGCCGCTA
1 TTTTATA-AAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAAAGCCGCAA
* *
120895198 TAGACCAAGACCTTTAGCGGCGC
65 TAGACCAAGAACTTTAGCAGCGC
* *
120895221 TTTTATAAAAAACACCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAAAGCCTCAAT
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAAAGCCGCAAT
120895286 AGACCAAGAACTTTAGCAGCGC
66 AGACCAAGAACTTTAGCAGCGC
* * *
120895308 TTTTATAAAAAACGCCGCTATAGACCTATAATTTTAGCGGCGCTTTTGTAAAAAAACGCCGC
1 TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAAAGCCGC
120895370 TAATTTGCCT
Statistics
Matches: 206, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
83 5 0.02
85 37 0.18
86 67 0.33
87 97 0.47
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (87 bp):
TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAAAGCCGCAAT
AGACCAAGAACTTTAGCAGCGC
Found at i:120896283 original size:18 final size:18
Alignment explanation
Indices: 120896251--120896288 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
120896241 TACAATATAG
120896251 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
120896270 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
120896287 TA
1 TA
120896289 CTTGATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:120898361 original size:3 final size:3
Alignment explanation
Indices: 120898348--120898399 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
120898338 GAACATAGTA
*
120898348 ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
120898396 ATT A
1 ATT A
120898400 GTATATATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:120903559 original size:19 final size:19
Alignment explanation
Indices: 120903525--120903561 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
120903515 TTTTAAATAA
*
120903525 ATATTCTTTTATTCTTTGT
1 ATATTCTTTTACTCTTTGT
*
120903544 ATATTCTTTTGCTCTTTG
1 ATATTCTTTTACTCTTTG
120903562 GACTATTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.08, T:0.65
Consensus pattern (19 bp):
ATATTCTTTTACTCTTTGT
Found at i:120904954 original size:13 final size:13
Alignment explanation
Indices: 120904936--120904974 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
120904926 CTTGAGACCT
120904936 TAAAAAAAAGAAA
1 TAAAAAAAAGAAA
120904949 TAAAAAGAAA-AAA
1 TAAAAA-AAAGAAA
*
120904962 TCAAAAAAAGAAA
1 TAAAAAAAAGAAA
120904975 GAAAGAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 3 0.13
13 17 0.74
14 3 0.13
ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08
Consensus pattern (13 bp):
TAAAAAAAAGAAA
Found at i:120906197 original size:66 final size:66
Alignment explanation
Indices: 120906056--120906243 Score: 254
Period size: 66 Copynumber: 2.8 Consensus size: 66
120906046 TTTTGGCATT
* *
120906056 CATAACACATCTAGTTAGGAGCATTTGATTTATTTTTTGATCATAGCATCCTAATTATTTGACAT
1 CATAACACATCTAGTTAGGAGCATTTGATTCA--TTTTGATCATAGCATCCTAATTATGTGACAT
120906121 AAG
64 AAG
* * * ** *
120906124 --TATCACATCTAGTTAGGTGCATTTGACTCATTTCAATCATAGCATCCTAATTATGTGACATCA
1 CATAACACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATGTGACATAA
120906187 G
66 G
* *
120906188 CATAACACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCTTAATTAT
1 CATAACACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTAT
120906244 TTGGATAAAC
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
64 30 0.29
66 73 0.71
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (66 bp):
CATAACACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATGTGACATAA
G
Found at i:120906529 original size:45 final size:45
Alignment explanation
Indices: 120906430--120906529 Score: 116
Period size: 45 Copynumber: 2.2 Consensus size: 45
120906420 TTATAACAAG
* *
120906430 TCTTATCTCCCTGAGGTTGCAGTGGAGTAGACTGAAGATTGAAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTGAAGA
* *
120906475 TTTTTTCTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGATGGTG-A-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGAT--TGAAGA
120906520 TCTTATCTCC
1 TCTTATCTCC
120906530 ATGTATCGGC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
44 1 0.02
45 42 0.91
46 1 0.02
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTGAAGA
Found at i:120906830 original size:177 final size:175
Alignment explanation
Indices: 120906503--120906897 Score: 485
Period size: 177 Copynumber: 2.2 Consensus size: 175
120906493 GCAGTGGAGC
*
120906503 AGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTTA
1 AGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTTA
* * *
120906568 TCTTTCTGAGGTAGTAAGAGAGCAAGTTGAAAGATGAGTCTTATCTTCCTGAGGTAGCAAGGAAG
66 TCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAAGATGAGTCTTATCTTCCTAAGGTAGCAAGGAAG
*
120906633 CAGACTGAGAATTAAAGATCTTATCTCCCT-AAGCAGTAGCGAAGT
131 CAGACTGAGAATTAAAGATCTTATCTCCCTCAA-CAGAAGCGAAGT
* * * **
120906678 AGATTGAGGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCTA-TTGACCT
1 AGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAG-CCT
* * * **
120906742 TATCTCTCTGAGGTAGCAGGAGAGTAGGTTG-GCGATTGTAGTCTTATCTTCCTAAGGTAGCAAG
64 TATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAAGA-TG-AGTCTTATCTTCCTAAGGTAGCAAG
* * * * *
120906806 GAAGCAGACT-A-AATGTGGAAGATCTTATTTCTCTCAACAGAAGTGGAGT
127 GAAGCAGACTGAGAAT-T-AAAGATCTTATCTCCCTCAACAGAAGCGAAGT
* * *
120906855 AGATCGAAAAAGGCAAATCTTATCTCCATGTATCGGCAATGGA
1 AGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGA
120906898 ATAGATTTAA
Statistics
Matches: 188, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
175 56 0.30
176 35 0.19
177 95 0.51
178 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (175 bp):
AGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAGCCTTA
TCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAAGATGAGTCTTATCTTCCTAAGGTAGCAAGGAAG
CAGACTGAGAATTAAAGATCTTATCTCCCTCAACAGAAGCGAAGT
Found at i:120907143 original size:265 final size:266
Alignment explanation
Indices: 120906686--120907175 Score: 616
Period size: 265 Copynumber: 1.8 Consensus size: 266
120906676 GTAGATTGAG
* * **
120906686 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCTATTGACCTTATCTCTCT
1 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGAGTTTAGCCACAGACCTTATCTCTCT
* * * ** *
120906751 GAGGTAGCAGGAGAGTAGGTTGGCGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACT
66 GAGGTAACAAGAGAGCAGGTTGAAGAATGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACT
* ** *
120906816 AAATGTGGAAGATCTTATTTCTCTCAACAGAAGTGGAGTAGATCGAAAAAGGCAAATCTTATCTC
131 AAATGTGGAAGATCTTATCTCTCTCAACAGAAGCAGAGAAGATCGAAAAAGGCAAATCTTATCTC
* *
120906881 CATGTATCGGCAATGGAATAGATTTAAGCCCCAAGATTTATTTTCCTGAACTTGCAGCAGAACAA
196 CATGTATCAGCAATGGAACAGATTTAAGCCCCAAGATTTATTTTCCTGAACTTGCAGCAGAACAA
120906946 ATTGTA
261 ATTGTA
* * * *
120906952 GATGGTGAATTTTATCTCCATGTATCGGCAATGGGGCAGAGTTTAGCCACCAG-CCTTATCTCTT
1 GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGAGTTTAGCCA-CAGACCTTATCTCTC
*
120907016 TGAGGTAACAAGAGAGCAGGTTGAAGAATG-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
65 TGAGGTAACAAGAGAGCAGGTTGAAGAATGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGAC
* * * * * *
120907080 TGAGAAT-T-GAAGATCTTATCTC-CTTAAGCAGTAA-CAGAGCAAG-TTGAAGATGGCGAGTCT
130 T-A-AATGTGGAAGATCTTATCTCTCTCAA-CAG-AAGCAGAG-AAGATCGAAAAAGGCAAATCT
* *
120907140 TATCTCCATGTATCAGTAATGGAACAGATTTTAGCC
190 TATCTCCATGTATCAGCAATGGAACAGATTTAAGCC
120907176 ATTAGCCTTA
Statistics
Matches: 189, Mismatches: 29, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
264 4 0.02
265 97 0.51
266 84 0.44
267 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (266 bp):
GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGAGTTTAGCCACAGACCTTATCTCTCT
GAGGTAACAAGAGAGCAGGTTGAAGAATGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACT
AAATGTGGAAGATCTTATCTCTCTCAACAGAAGCAGAGAAGATCGAAAAAGGCAAATCTTATCTC
CATGTATCAGCAATGGAACAGATTTAAGCCCCAAGATTTATTTTCCTGAACTTGCAGCAGAACAA
ATTGTA
Found at i:120907198 original size:176 final size:177
Alignment explanation
Indices: 120906963--120907283 Score: 491
Period size: 176 Copynumber: 1.8 Consensus size: 177
120906953 ATGGTGAATT
* ** *
120906963 TTATCTCCATGTATCGGCAATGGGGCAGAGTTTAGCCACCAGCCTTATCTCTTTGAGGTAACAAG
1 TTATCTCCATGTATCAGCAATGGAACAGAGTTTAGCCACCAGCCTTATCTCTCTGAGGTAACAAG
* *
120907028 AGAGCAGGTTGAAGAATG-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGAATTGAAG
66 AGAGCAGATTGAAGAATGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGAATTGAAG
120907092 ATCTTATCTCCTTAAGCAGTAACAGAGCAAGTTGAAGATGGCGAGTC
131 ATCTTATCTCCTTAAGCAGTAACAGAGCAAGTTGAAGATGGCGAGTC
* * ** *
120907139 TTATCTCCATGTATCAGTAATGGAACAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAGCAAG
1 TTATCTCCATGTATCAGCAATGGAACAGAGTTTAGCCACCAGCCTTATCTCTCTGAGGTAACAAG
** * *
120907204 AGAGCAGATTGGTGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTAAGAATTGAAG
66 AGAGCAGATTGAAGAATGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGAATTGAAG
*
120907269 ATTTTATCTCCTTAA
131 ATCTTATCTCCTTAA
120907284 AGTTGCAGCG
Statistics
Matches: 128, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
176 70 0.55
177 58 0.45
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (177 bp):
TTATCTCCATGTATCAGCAATGGAACAGAGTTTAGCCACCAGCCTTATCTCTCTGAGGTAACAAG
AGAGCAGATTGAAGAATGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGAATTGAAG
ATCTTATCTCCTTAAGCAGTAACAGAGCAAGTTGAAGATGGCGAGTC
Found at i:120907840 original size:180 final size:179
Alignment explanation
Indices: 120907492--120908003 Score: 769
Period size: 180 Copynumber: 2.9 Consensus size: 179
120907482 TCTCTTTGAG
* * * * *
120907492 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGATAGCAAGGAAACAAACTGAGA
1 GTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAGA
* * * * * * * * *
120907557 TTTGAAGATCTTATGTCACT-AAGATAGTAGTGGAACAGA--TTGAAGATGGTGAATCTTATCTC
66 ATTGAAGATTTTATCTCCCTGAAG-TTGCAGCGGAGCAGATCTTGTAGATGGTGAATCTTATCTC
*
120907619 CATGTATCGGCAATGGAGCAGATTTTACCACTAAGCCTTATTTCTCTGAC
130 CATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATTTCTCTGAC
* *
120907669 GTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTCCTGAGGTAGCAAGGAAGTAGACTAAGA
1 GTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAGA
120907734 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTAGTAGATGGTGAATCTTATCTC
66 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTT-GTAGATGGTGAATCTTATCTC
*
120907799 CATGTATCGACAATGGAGCAGATTTTACCACCAAGCCTTATTTCTCTGAC
130 CATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATTTCTCTGAC
120907849 GTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAGA
1 GTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAGA
* * *
120907914 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGTAGATCTTCGTAGATGATGAATCTCATCTC
66 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTT-GTAGATGGTGAATCTTATCTC
* *
120907979 CATGTATCGGTAATAGAGCAGATTT
130 CATGTATCGGCAATGGAGCAGATTT
120908004 GAGCCACCGA
Statistics
Matches: 304, Mismatches: 27, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
177 85 0.28
178 3 0.01
179 2 0.01
180 214 0.70
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (179 bp):
GTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAGA
ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTGTAGATGGTGAATCTTATCTCC
ATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTTATTTCTCTGAC
Found at i:120909158 original size:26 final size:26
Alignment explanation
Indices: 120909129--120909210 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
120909119 TGATACAAAT
*
120909129 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120909155 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
120909181 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120909207 TGAT
1 TGAT
120909211 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:120915899 original size:13 final size:14
Alignment explanation
Indices: 120915877--120915905 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
120915867 CTTGATAAGT
120915877 TTATT-TTTTTAAA
1 TTATTATTTTTAAA
120915890 TTATTATTTTTAAA
1 TTATTATTTTTAAA
120915904 TT
1 TT
120915906 CCTTTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATTATTTTTAAA
Found at i:120916468 original size:44 final size:44
Alignment explanation
Indices: 120916382--120916468 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
120916372 TTTAGCCACC
** *
120916382 AGTCTTATCTCTCTAAGGTAACAAGAAAGCAGGTTGACGATTGT
1 AGTCTTATCTCTCTAAGGTAACAAGAAAGCAGACTGAAGATTGT
* * *
120916426 AGTCTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
1 AGTCTTATCTCT-CTAAGGTAACAAGAAAGCAGACTGAAGATTG
120916469 AAGGTCTATC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 1 0.03
44 35 0.97
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
AGTCTTATCTCTCTAAGGTAACAAGAAAGCAGACTGAAGATTGT
Found at i:120918598 original size:87 final size:87
Alignment explanation
Indices: 120918436--120918606 Score: 213
Period size: 87 Copynumber: 2.0 Consensus size: 87
120918426 GGGAAAATTC
* * * **
120918436 AGATAAACTGCTAGTAGGTTTTGAATGCACAACATATTTGCAGATAAAAGCTGTTAGTACGTTTG
1 AGATAAACTGCCAGTAGGTTGTGAATGCACAACATATTTGCAAATAAAAGCTGTTAGTACAATTG
*
120918501 CATATGAACCACCAGTGTTTGT
66 CATATAAACCACCAGTGTTTGT
* *
120918523 AGATAAACTGCCAGTAGGTTGTGAGTGCACAACATATTTGTAAATAAAAGCT-TCTAGTA-AATT
1 AGATAAACTGCCAGTAGGTTGTGAATGCACAACATATTTGCAAATAAAAGCTGT-TAGTACAATT
*
120918586 -CATAGATAAACCACTAGTGTT
65 GCAT--ATAAACCACCAGTGTT
120918607 GCAGATTATT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
85 3 0.04
86 3 0.04
87 66 0.92
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (87 bp):
AGATAAACTGCCAGTAGGTTGTGAATGCACAACATATTTGCAAATAAAAGCTGTTAGTACAATTG
CATATAAACCACCAGTGTTTGT
Found at i:120920106 original size:37 final size:37
Alignment explanation
Indices: 120920065--120920141 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
120920055 ACTAAACCTC
120920065 TAAAATATGACAATGGTACTTAACCATCAAACTTATT
1 TAAAATATGACAATGGTACTTAACCATCAAACTTATT
* *
120920102 TAAAATATTACAATGGTACTTGACCATCAAACTTATT
1 TAAAATATGACAATGGTACTTAACCATCAAACTTATT
120920139 TAA
1 TAA
120920142 TTTTTTAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.34
Consensus pattern (37 bp):
TAAAATATGACAATGGTACTTAACCATCAAACTTATT
Found at i:120922917 original size:38 final size:34
Alignment explanation
Indices: 120922875--120922950 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 34
120922865 ATACATGTAT
120922875 ATATTCTTTCATATGTATTATATATATATATGCTTTTA
1 ATATT-TTT-ATATGTATTAT-TATATATATG-TTTTA
* *
120922913 ATA-TTTTATGTGTATTATTATGTATATGTTTTA
1 ATATTTTTATATGTATTATTATATATATGTTTTA
120922946 ATATT
1 ATATT
120922951 GTTAGTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
33 8 0.23
34 10 0.29
35 10 0.29
36 3 0.09
37 1 0.03
38 3 0.09
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (34 bp):
ATATTTTTATATGTATTATTATATATATGTTTTA
Found at i:120922989 original size:21 final size:21
Alignment explanation
Indices: 120922965--120923009 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
120922955 GTCATTTATC
*
120922965 TTTTGAATTATTA-TATGTATA
1 TTTTGAA-TATTACTATATATA
*
120922986 TTTTTAATATTACTATATATA
1 TTTTGAATATTACTATATATA
120923007 TTT
1 TTT
120923010 CTAATACCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTGAATATTACTATATATA
Found at i:120923002 original size:23 final size:21
Alignment explanation
Indices: 120922973--120923015 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
120922963 TCTTTTGAAT
* *
120922973 TATTA-TATGTATATTTTTAA
1 TATTACTATATATATTTCTAA
120922993 TATTACTATATATATTTCTAA
1 TATTACTATATATATTTCTAA
120923014 TA
1 TA
120923016 CCATTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (21 bp):
TATTACTATATATATTTCTAA
Found at i:120923014 original size:21 final size:20
Alignment explanation
Indices: 120922973--120923028 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
120922963 TCTTTTGAAT
* *
120922973 TATTATATGTATATTTTTAA
1 TATTATATATATATTTCTAA
120922993 TATTACTATATATATTTCTAA
1 TATTA-TATATATATTTCTAA
**
120923014 TACCAT-TATATATTT
1 TATTATATATATATTT
120923029 ATATATATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 9 0.29
20 6 0.19
21 16 0.52
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (20 bp):
TATTATATATATATTTCTAA
Found at i:120923133 original size:21 final size:21
Alignment explanation
Indices: 120923092--120923133 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
120923082 TCTAATATAA
* *
120923092 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
120923113 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
120923134 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:120935706 original size:87 final size:87
Alignment explanation
Indices: 120935407--120935845 Score: 494
Period size: 87 Copynumber: 5.0 Consensus size: 87
120935397 TTTCTGCTTG
* * * *
120935407 TCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACCCTGAGGTATTTTCAACT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
* *
120935472 TCTGTATTTTCAA--TTGATGTT
66 TCTGT-TTTTCAATCTTTATTTT
* * * * *
120935493 TC-AAAATCAACTCATATTGCGAGAAGTGGGTCGAGCCTTAGGACACGCTGAGGTATTTTCAATA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT-
* *
120935557 TT-TTTTTTTCAAT-TTCTGTTTT
65 TTCTGTTTTTCAATCTT-TATTTT
** ** *
120935579 AAAAAAAATGGACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
1 -TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
* *
120935644 TTCTGTTTTTTAATCTATATTTT
65 TTCTGTTTTTCAATCTTTATTTT
*
120935667 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
* * **
120935732 TCTGCTTTTCAATTTTTGCTTT
66 TCTGTTTTTCAATCTTTATTTT
*
120935754 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACATGCCGAGGTATTTT
1 TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CAC--GCTGAGGTATTTT
* * *
120935818 CAAATTCTGTCTTTCAAACTTTATTTT
61 CAATTTCTGTTTTTCAATCTTTATTTT
120935845 T
1 T
120935846 AATTTTTACT
Statistics
Matches: 295, Mismatches: 46, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
84 7 0.02
85 58 0.20
86 7 0.02
87 79 0.27
88 70 0.24
89 42 0.14
91 32 0.11
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (87 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
TCTGTTTTTCAATCTTTATTTT
Found at i:120935743 original size:14 final size:14
Alignment explanation
Indices: 120935724--120935757 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
120935714 GCTGAGGTAA
120935724 TTTCAATTTCTGCT
1 TTTCAATTTCTGCT
*
120935738 TTTCAATTTTTGCT
1 TTTCAATTTCTGCT
120935752 TTTCAA
1 TTTCAA
120935758 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTGCT
Found at i:120935922 original size:103 final size:102
Alignment explanation
Indices: 120935737--120936207 Score: 480
Period size: 103 Copynumber: 4.9 Consensus size: 102
120935727 CAATTTCTGC
* * * * *
120935737 TTTTCAATTTTTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTTAATTTTTACTTTTC-AAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCA
120935802 CATGCCGAGGTATTTTCAAATTCTGTCTTTCAAACTTTA
65 CATGCCGAGGTATTTTCAAATTCTGTCTTTCAAA-TTTA
* * *
120935841 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCGC
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
* * *
120935906 ATGCTGAGGTATTTTCAATTTCTGT-TTT--AATTCA
66 ATGCCGAGGTATTTTCAAATTCTGTCTTTCAAATTTA
* * * *
120935940 ----T--GTTTT-C-----AAAAA-TTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
*
120935992 ATGCCAAGGTATTTTCAAATTCTGTCTTTCAAATTCTA
66 ATGCCGAGGTATTTTCAAATTCTGTCTTTCAAATT-TA
* *
120936030 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGC
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
*
120936095 ATGCCGAGGTATTTTC-AA-------TTTC-----TG
66 ATGCCGAGGTATTTTCAAATTCTGTCTTTCAAATTTA
* **
120936119 TTTTTAATTTCTGTTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
* * *
120936183 ATGCTGAGGTATTTCCAATTTCTGT
66 ATGCCGAGGTATTTTCAAATTCTGT
120936208 TTTAATTCAT
Statistics
Matches: 305, Mismatches: 38, Indels: 57
0.76 0.09 0.14
Matches are distributed among these distances:
86 56 0.18
87 8 0.03
88 52 0.17
89 27 0.09
90 1 0.00
92 1 0.00
93 4 0.01
94 1 0.00
95 5 0.02
96 4 0.01
97 1 0.00
99 3 0.01
100 2 0.01
102 10 0.03
103 113 0.37
104 17 0.06
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (102 bp):
TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
ATGCCGAGGTATTTTCAAATTCTGTCTTTCAAATTTA
Found at i:120935977 original size:86 final size:87
Alignment explanation
Indices: 120935855--120936260 Score: 401
Period size: 86 Copynumber: 4.5 Consensus size: 87
120935845 TAATTTTTAC
* * * **
120935855 TTTTCAAAAACTCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCGCATGCTGAGGTATTT
1 TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCAAGGTATTT
*
120935920 TCAATTTCTGTTTTAATTCATG
66 TCAAATTCTGTTTTAATTCATG
* * *
120935942 TTTTCAAAAA-TTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCAAGGTATTT
1 TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCAAGGTATTT
120936006 TCAAATTCTGTCTTTCAAATTCTAT-
66 TCAAATTCTGT-TTT--AATTC-ATG
** * *
120936031 TTTT-AATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGC
1 TTTTCAA---AAAC---TC----A---A-CTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
* *
120936095 ATGCCGAGGTATTTTCAATTTCTGTTTTTAATTTC-TG
52 ATGCCAAGGTATTTTCAAATTCTG-TTTTAA-TTCATG
**
120936132 TTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATT
1 -TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCAAGGTATT
* *
120936196 TCCAATTTCTGTTTTAATTCATG
65 TTCAAATTCTGTTTTAATTCATG
*
120936219 TTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCT
120936261 TTTTAATTTC
Statistics
Matches: 269, Mismatches: 25, Indels: 51
0.78 0.07 0.15
Matches are distributed among these distances:
86 100 0.37
87 21 0.08
88 58 0.22
89 10 0.04
90 2 0.01
91 1 0.00
92 1 0.00
95 1 0.00
96 2 0.01
99 1 0.00
100 2 0.01
101 2 0.01
102 8 0.03
103 59 0.22
104 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (87 bp):
TTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGCCAAGGTATTT
TCAAATTCTGTTTTAATTCATG
Found at i:120935981 original size:189 final size:190
Alignment explanation
Indices: 120935650--120936207 Score: 824
Period size: 189 Copynumber: 2.9 Consensus size: 190
120935640 CAATTTCTGT
* * * * *
120935650 TTTTTAATCTATATTTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---G
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCG
* * *
120935711 CACGCTGAGGTAATTTCAATTTCTGCTTTTCAATTTTTGCTTTTCAAAAAAATCAACTCATATTG
65 CATGCTGAGGTATTTTCAATTTCTGCTTTT-AA-TTCTGCTTTTC--AAAAATCAACTCATATTG
120935776 CGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAACTT-T
126 CGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAA-TTCT
120935840 A
190 A
*
120935841 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCGC
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGC
*
120935906 ATGCTGAGGTATTTTCAATTTCTG-TTTTAATTCATG-TTTTCAAAAATTAACTCATATTGCGAG
66 ATGCTGAGGTATTTTCAATTTCTGCTTTTAATTC-TGCTTTTCAAAAATCAACTCATATTGCGAG
*
120935969 AGGTGAGTTGAGCCTCGGGTCACATGCCAAGGTATTTTCAAATTCTGTCTTTCAAATTCTA
130 AGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAATTCTA
120936030 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGC
1 TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGC
* * *
120936095 ATGCCGAGGTATTTTCAATTTCTGTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAG
66 ATGCTGAGGTATTTTCAATTTCTGCTTTTAA-TTCTGCTTTTCAAAAATCAACTCATATTGCGAG
* * * * *
120936160 AAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTCCAATTTCTGT
130 AGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGT
120936208 TTTAATTCAT
Statistics
Matches: 338, Mismatches: 20, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
188 2 0.01
189 165 0.49
190 8 0.02
191 101 0.30
192 34 0.10
193 4 0.01
194 24 0.07
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (190 bp):
TTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCGC
ATGCTGAGGTATTTTCAATTTCTGCTTTTAATTCTGCTTTTCAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTCTGTCTTTCAAATTCTA
Found at i:120936127 original size:13 final size:13
Alignment explanation
Indices: 120936106--120936136 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
120936096 TGCCGAGGTA
*
120936106 TTTTCAATTTCTG
1 TTTTTAATTTCTG
120936119 TTTTTAATTTCTG
1 TTTTTAATTTCTG
120936132 TTTTT
1 TTTTT
120936137 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:120936168 original size:88 final size:87
Alignment explanation
Indices: 120936018--120936430 Score: 378
Period size: 88 Copynumber: 4.7 Consensus size: 87
120936008 AAATTCTGTC
* * * *
120936018 TTTCAAATTCTATTTTTAATTTTTACTTTTCAAAAACTCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTCAATTTCTGTTTTTAATTTCT-GTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGA
*
120936083 GCCTTGGCTCGCATGCCGAGGTAT
64 GCCTTGGCTCACATGCCGAGGTAT
120936107 TTTCAATTTCTGTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTCAATTTCTGTTTTTAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
* *
120936172 CCTCGGCTCACATGCTGAGGTAT
65 CCTTGGCTCACATGCCGAGGTAT
* *
120936195 TTCCAATTTCTG-TTTTAA-TTCATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAATTTCTGTTTTTAATTTC-TGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
* * ** *
120936258 CCTT--TTTA-ATTTC--TGT-T
65 CCTTGGCTCACATGCCGAGGTAT
** * * ** * *
120936275 TTTCAAAATCTATTTTTCAAATTAAG-TTTCAAAAAATACCAACTCATATTGCGAGAGGTGAATT
1 TTTCAATTTCTGTTTTT-AATTTCTGTTTTC-AAAAAT--CAACTCATATTGCGAGAAGTGAGTT
* * *
120936339 -ACGCCTTGGCTCACGTGCTGAGCTAT
62 GA-GCCTTGGCTCACATGCCGAGGTAT
* * * * * * *
120936365 TCTCAATTTCTGTTTTTAATGTCTGTTTTTAAAGAATCAATTCATATTGCAAGAAATGGGTTGAG
1 TTTCAATTTCTGTTTTTAATTTCTGTTTTCAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAG
120936430 C
65 C
120936431 TCAAGATCAC
Statistics
Matches: 260, Mismatches: 46, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
80 9 0.03
81 10 0.04
82 9 0.03
83 5 0.02
84 31 0.12
86 46 0.18
87 9 0.03
88 81 0.31
89 40 0.15
90 20 0.08
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (87 bp):
TTTCAATTTCTGTTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
CTTGGCTCACATGCCGAGGTAT
Found at i:120938669 original size:21 final size:20
Alignment explanation
Indices: 120938636--120938691 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
120938626 TCTTTTGAAC
* *
120938636 TATTATATGTATATTTTTAA
1 TATTATATATATATTTCTAA
120938656 TATTACTATATATATTTCTAA
1 TATTA-TATATATATTTCTAA
**
120938677 TACCAT-TATATATTT
1 TATTATATATATATTT
120938692 ATATATATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 9 0.29
20 6 0.19
21 16 0.52
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (20 bp):
TATTATATATATATTTCTAA
Found at i:120938798 original size:21 final size:21
Alignment explanation
Indices: 120938756--120938798 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
120938746 CTAATATAAA
* *
120938756 TATATATATATCATATAGGTT
1 TATATACATATCATACAGGTT
*
120938777 TATATACATATCATACATGTT
1 TATATACATATCATACAGGTT
120938798 T
1 T
120938799 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (21 bp):
TATATACATATCATACAGGTT
Found at i:120939754 original size:26 final size:26
Alignment explanation
Indices: 120939725--120939832 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
120939715 TGATACAAAT
120939725 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
120939751 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120939777 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120939803 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
120939829 TGAT
1 TGAT
120939833 TGGGAATTTC
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:120946785 original size:26 final size:25
Alignment explanation
Indices: 120946756--120946860 Score: 185
Period size: 26 Copynumber: 4.2 Consensus size: 25
120946746 GATATCCAAT
120946756 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
120946782 TGATAATGGTTAGGTAAATGTT-CA
1 TGATAATGGTTAGGTAAATGTTCCA
120946806 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
120946831 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
120946857 TGAT
1 TGAT
120946861 GGAATTTCAT
Statistics
Matches: 77, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
24 24 0.31
25 24 0.31
26 29 0.38
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:120946829 original size:49 final size:52
Alignment explanation
Indices: 120946756--120946860 Score: 189
Period size: 49 Copynumber: 2.1 Consensus size: 52
120946746 GATATCCAAT
120946756 TGATAATGGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
120946806 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
120946857 TGAT
1 TGAT
120946861 GGAATTTCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
49 25 0.47
50 22 0.42
51 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:120954041 original size:26 final size:26
Alignment explanation
Indices: 120954005--120954088 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
120953995 CATAAAATTC
*
120954005 TTATCATGAAACATTCACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
120954031 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
120954057 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
120954083 TTATCA
1 TTATCA
120954089 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:120955392 original size:68 final size:68
Alignment explanation
Indices: 120955283--120955417 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
120955273 TGCCTTCTTT
*
120955283 TGATATATCTCATTCACTTATTTGCAACGCTTCCTCTCTCCAT-AAAAAAATTGCTCTTCAATTC
1 TGATATATCTCATTCACTTATTTGCAACGCTTCCTCTCTCCATAAAAAAAACT-CTCTTCAATTC
120955347 CAAC
65 CAAC
*
120955351 TGATATATCTCATTCACTTATTTGCAATGCTTCCTCTCTCCATAAAAAAAACTCTCTTCAATTCC
1 TGATATATCTCATTCACTTATTTGCAACGCTTCCTCTCTCCATAAAAAAAACTCTCTTCAATTCC
120955416 AA
66 AA
120955418 ACTGTCGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 56 0.88
69 8 0.12
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.37
Consensus pattern (68 bp):
TGATATATCTCATTCACTTATTTGCAACGCTTCCTCTCTCCATAAAAAAAACTCTCTTCAATTCC
AAC
Found at i:120955903 original size:106 final size:106
Alignment explanation
Indices: 120955754--120955966 Score: 295
Period size: 106 Copynumber: 2.0 Consensus size: 106
120955744 AAACATTGCT
* * *
120955754 AATTAAATCAAATTTTGTGAAAAATGCCTTTGTATTTTGAGTTAATC-GAGAAGAAAATCATGCC
1 AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCAG-GAAGAAAATCATGCC
* * * *
120955818 TCATAAGTTAGGGCACGATG-TCTCGAATCCCTGAAAATGAGA
65 CCATAAGTTAGGACACGATGCT-TCAAATCCCTGAAAATAAGA
* * *
120955860 AATTAAATCAAATTTTATGAAGAATGTCTTCGTATTTCGAGTTAATCAGGAAGAGAATCATGCCC
1 AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCAGGAAGAAAATCATGCCC
*
120955925 CGTAAGTTAGGACACGATGCTTCAAATCCCTGAAAATAAGA
66 CATAAGTTAGGACACGATGCTTCAAATCCCTGAAAATAAGA
120955966 A
1 A
120955967 TGCTCATTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
106 92 0.98
107 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (106 bp):
AATTAAATCAAATTTTATGAAAAATGCCTTCGTATTTCGAGTTAATCAGGAAGAAAATCATGCCC
CATAAGTTAGGACACGATGCTTCAAATCCCTGAAAATAAGA
Found at i:120964798 original size:22 final size:22
Alignment explanation
Indices: 120964758--120964799 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
120964748 TGGCCACCCA
*
120964758 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
120964780 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
120964800 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:120964898 original size:23 final size:21
Alignment explanation
Indices: 120964845--120964919 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 21
120964835 CCATTCAAGA
* *
120964845 CTTTGTTTTAGAGGGGGGTTTT
1 CTTTGTTTTGGA-GGAGGTTTT
*
120964867 GGTTT-TTTTGGAGGAGGATTGTT
1 -CTTTGTTTTGGAGGAGG-TT-TT
120964890 CTTTGTTTTGGAGGAGGTTTT
1 CTTTGTTTTGGAGGAGGTTTT
*
120964911 TTTTGTTTT
1 CTTTGTTTT
120964920 TTTGGAGGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 14 0.32
22 13 0.30
23 17 0.39
ACGTcount: A:0.09, C:0.03, G:0.33, T:0.55
Consensus pattern (21 bp):
CTTTGTTTTGGAGGAGGTTTT
Found at i:120964921 original size:23 final size:23
Alignment explanation
Indices: 120964870--120964974 Score: 79
Period size: 24 Copynumber: 4.4 Consensus size: 23
120964860 GGGTTTTGGT
*
120964870 TTTTTTGGAGGAGGATTGTTCTTTG
1 TTTTTTGGAGGAGG-TT-TTTTTTG
120964895 --TTTTGGAGGAGGTTTTTTTTG
1 TTTTTTGGAGGAGGTTTTTTTTG
* * *
120964916 TTTTTTTGGAGGTGTTTTTTTGTTT
1 -TTTTTTGGAGGAGGTTTTTT-TTG
* *
120964941 TTTTTTGGAAAGAAGGTTGTTTTTG
1 TTTTTTGG--AGGAGGTTTTTTTTG
*
120964966 TTTCTTGGA
1 TTTTTTGGA
120964975 AAGGCTAGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
21 6 0.09
22 2 0.03
23 13 0.20
24 24 0.38
25 11 0.17
26 8 0.12
ACGTcount: A:0.11, C:0.02, G:0.29, T:0.58
Consensus pattern (23 bp):
TTTTTTGGAGGAGGTTTTTTTTG
Found at i:120964927 original size:24 final size:24
Alignment explanation
Indices: 120964863--120964968 Score: 90
Period size: 23 Copynumber: 4.4 Consensus size: 24
120964853 TAGAGGGGGG
* *
120964863 TTTTGGTTTTTTTGGAGGAGGATT
1 TTTTTGTTTTTTTGGAGGAGGTTT
* * *
120964887 GTTCT-TTGTTTTGGAGGAGGTTT
1 TTTTTGTTTTTTTGGAGGAGGTTT
*
120964910 TTTTTGTTTTTTTGGAGG-TGTTT
1 TTTTTGTTTTTTTGGAGGAGGTTT
* * *
120964933 TTTTGTTTTTTTTTGGAAAGAAGGTTG
1 TTTT-TGTTTTTTTGG--AGGAGGTTT
120964960 TTTTTGTTT
1 TTTTTGTTT
120964969 CTTGGAAAGG
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
23 27 0.43
24 23 0.37
26 6 0.10
27 7 0.11
ACGTcount: A:0.10, C:0.01, G:0.28, T:0.60
Consensus pattern (24 bp):
TTTTTGTTTTTTTGGAGGAGGTTT
Found at i:120964942 original size:21 final size:21
Alignment explanation
Indices: 120964902--120964944 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
120964892 TTGTTTTGGA
120964902 GGAGGTTTTTTTTGTTTTTTT
1 GGAGGTTTTTTTTGTTTTTTT
120964923 GGAGGTGTTTTTTTGTTTTTTT
1 GGAGGT-TTTTTTTGTTTTTTT
120964945 TTGGAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.05, C:0.00, G:0.26, T:0.70
Consensus pattern (21 bp):
GGAGGTTTTTTTTGTTTTTTT
Found at i:120965293 original size:3 final size:3
Alignment explanation
Indices: 120965279--120965356 Score: 54
Period size: 3 Copynumber: 25.3 Consensus size: 3
120965269 GAGCTTTGTT
* *
120965279 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
120965323 TTCC TCA TGTA TATA TTA TTA TT- TATA TTA TTA T
1 TT-A TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA T
120965357 CATATTATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
2 4 0.07
3 47 0.80
4 8 0.14
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:120965324 original size:12 final size:13
Alignment explanation
Indices: 120965279--120965361 Score: 61
Period size: 12 Copynumber: 6.7 Consensus size: 13
120965269 GAGCTTTGTT
120965279 TTATTAT-T-TTA
1 TTATTATATATTA
* *
120965290 TTATT-TTTACTA
1 TTATTATATATTA
120965302 TTATT-TATATTA
1 TTATTATATATTA
*
120965314 TTATTAT-TATTCC
1 TTATTATATATT-A
*
120965327 TCATGTATATATTA
1 TTAT-TATATATTA
120965341 TTATT-TATATTA
1 TTATTATATATTA
*
120965353 TTATCATAT
1 TTATTATAT
120965362 TATATATGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
10 1 0.02
11 6 0.11
12 32 0.56
13 8 0.14
14 6 0.11
15 4 0.07
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (13 bp):
TTATTATATATTA
Found at i:120965624 original size:12 final size:12
Alignment explanation
Indices: 120965591--120965633 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
120965581 TATATTAGTG
* *
120965591 TATATTTTTATG
1 TATATTTATATA
*
120965603 TATATATATATA
1 TATATTTATATA
120965615 TATATTTATATA
1 TATATTTATATA
120965627 TAGTATT
1 TA-TATT
120965634 GTTTTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (12 bp):
TATATTTATATA
Found at i:120965794 original size:24 final size:24
Alignment explanation
Indices: 120965739--120965787 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
120965729 TATACATATA
120965739 TATATATT-TATATAGTATTATTGT
1 TATAT-TTATATATAGTATTATTGT
120965763 TATATTTATATATAGTATTATTGT
1 TATATTTATATATAGTATTATTGT
120965787 T
1 T
120965788 TACTTTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (24 bp):
TATATTTATATATAGTATTATTGT
Found at i:120968314 original size:6 final size:6
Alignment explanation
Indices: 120968271--120968304 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
120968261 ATTCATTCCA
120968271 TGCATT TGCATT TGCATT TGCATT TGCA-T TGCAT
1 TGCATT TGCATT TGCATT TGCATT TGCATT TGCAT
120968305 CATTTGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (6 bp):
TGCATT
Found at i:120971158 original size:7 final size:6
Alignment explanation
Indices: 120971090--120971165 Score: 63
Period size: 6 Copynumber: 13.0 Consensus size: 6
120971080 ATGGCAAAGG
* *
120971090 CAAAAA -AAAAA -AAAAA CAAAAAAA CAAAAA CAAAATA AAAAAA TAAAAA
1 CAAAAA CAAAAA CAAAAA C--AAAAA CAAAAA CAAAA-A CAAAAA CAAAAA
*
120971139 -AAAAA -AAAAA -AAAAC CAAAAA CAAAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
120971166 GGTACCCAAC
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
5 24 0.39
6 26 0.43
7 5 0.08
8 6 0.10
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (6 bp):
CAAAAA
Found at i:120971165 original size:1 final size:1
Alignment explanation
Indices: 120971091--120971152 Score: 79
Period size: 1 Copynumber: 62.0 Consensus size: 1
120971081 TGGCAAAGGC
* * * * *
120971091 AAAAAAAAAAAAAAACAAAAAAACAAAAACAAAATAAAAAAATAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
120971153 CCAAAAACAA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.92, C:0.05, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:120972954 original size:66 final size:66
Alignment explanation
Indices: 120972854--120972980 Score: 218
Period size: 66 Copynumber: 1.9 Consensus size: 66
120972844 CATTCATATA
* *
120972854 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGTATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
120972919 C
66 C
* *
120972920 ATAACACATCTGGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
120972981 TAAGCATAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:120973137 original size:44 final size:43
Alignment explanation
Indices: 120973044--120973810 Score: 454
Period size: 44 Copynumber: 17.7 Consensus size: 43
120973034 ATTCACAAGC
* * * *
120973044 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGGT
* *
120973089 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GGT
* * * * * * *
120973133 CTTAA-ACCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGGT
* * * *
120973174 CTT-ATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGGT
* * * * * *
120973216 CTTTAACCACCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGA-AGGT
* * * *
120973260 CTTAA-ACCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGGT
* *
120973304 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAA-GGT
* * * * *
120973348 CTTAAACCCCTAATCGGTAGGGTAACAGATCG-A-ATTATAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGGT
* * * *
120973390 CTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGGT
* * *
120973433 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGGT
* * * * *
120973476 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACAAGC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGA-AGGT
* * * *
120973520 CTTAACCCCCTAAGTAGTAGGGTAACAG-GCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGGT
* * * *
120973565 CTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGGT
* * * ***
120973608 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGA-AGGT
* * * **
120973652 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGA-AGGT
* * * * * *
120973697 CTTAA-CCCCTAACCAGTAGGGTAACAGGTTGAA-TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGGT
* * * * * * *
120973739 CTTAACCCCTTAAACAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGA-AGGT
* *
120973783 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
120973811 GCTGGAAATT
Statistics
Matches: 565, Mismatches: 122, Indels: 71
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.00
41 29 0.05
42 72 0.13
43 167 0.30
44 186 0.33
45 107 0.19
46 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGAAGGT
Found at i:120973196 original size:84 final size:86
Alignment explanation
Indices: 120973045--120973547 Score: 280
Period size: 87 Copynumber: 5.8 Consensus size: 86
120973035 TTCACAAGCC
* * * *
120973045 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 TTAAACACCTAAGCAGTAGGGTAACAAGCCG-A-A-TTGCAGATCTTAACCCCCTAAGCAGTAGG
120973110 GAAACAGATCGAAGACGAAGGG-T
63 GAAACAGATCGAAGACGAAGGGCT
* * *
120973133 CTTAAAC-CCTAATCGGTAGGGTAAC-AGACCGAATTGCAGATCTT-ATCCCCTAAGCAGTAGGG
1 -TTAAACACCTAAGCAGTAGGGTAACAAG-CCGAATTGCAGATCTTAACCCCCTAAGCAGTAGGG
* *
120973195 AAACAGATCGAAGATGATGGGCT
64 AAACAGATCGAAGACGAAGGGCT
* * * *
120973218 TTAACCACCTAAGCAGTAGGGTAACAAGCCGAATTTACA-AGCCTTAA-ACCCTAAGCAGTAGGG
1 TTAAACACCTAAGCAGTAGGGTAACAAGCCGAA-TTGCAGA-TCTTAACCCCCTAAGCAGTAGGG
* * ** **
120973281 TAACAG-GCTGAAGATTTACAGATC-
64 AAACAGATC-GAAGA-CGA-AGGGCT
* * * * ** * * * * *
120973305 TTAACCCCCTAAGCAGTAGGGAAAC-AGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGG
1 TTAAACACCTAAGCAGTAGGGTAACAAG-CCGAA-TTGCA-GATCTTAACCCCCTAAGCAGTAGG
* * * **
120973369 GTAACAGATCGAATTA--TAGATC-
63 GAAACAGATCGAA-GACGAAGGGCT
* * * * * *
120973391 TT-ATCTCCCTAAGCAGTAGGGAAAC-AGATCGAAGATGAAGATCTTAACCCCCTAAGCAGTAGG
1 TTAAAC-ACCTAAGCAGTAGGGTAACAAG-CCGAA-TTGCAGATCTTAACCCCCTAAGCAGTAGG
* *
120973454 GAAACAGATCGAAGATGATGGGCT
63 GAAACAGATCGAAGACGAAGGGCT
* * * * * *
120973478 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACA-AGCCTTAACCCCCTAAGTAGTAGGG
1 TTAAACACCTAAGCAGTAGGGTAACAAGCCGAA-TTGCAGA-TCTTAACCCCCTAAGCAGTAGGG
*
120973542 TAACAG
64 AAACAG
120973548 GCTGAAGATT
Statistics
Matches: 332, Mismatches: 59, Indels: 48
0.76 0.13 0.11
Matches are distributed among these distances:
84 42 0.13
85 68 0.20
86 79 0.24
87 84 0.25
88 29 0.09
89 28 0.08
90 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (86 bp):
TTAAACACCTAAGCAGTAGGGTAACAAGCCGAATTGCAGATCTTAACCCCCTAAGCAGTAGGGAA
ACAGATCGAAGACGAAGGGCT
Found at i:120973530 original size:216 final size:215
Alignment explanation
Indices: 120973038--120973547 Score: 733
Period size: 216 Copynumber: 2.4 Consensus size: 215
120973028 CAGTGAATTC
120973038 ACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAG
1 ACAAGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAG
120973103 CAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCTAATCGGTAGGGTAACAGACCGAATT
65 CAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCTAATCGGTAGGGTAACAGACCGAATT
* * *
120973168 GCAGATCTTATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCACCTAAGCA
130 ACAGATCTTATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCACCTAAGCA
* * *
120973233 GTAGGGTAACAAGCCGAATTT
195 GTAGGGAAACAAGCCGAAATG
*
120973254 ACAAGCCTTAAACCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGC
1 ACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGC
*
120973319 AGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGATCGAATT
66 AGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAA-CCCTAATCGGTAGGGTAACAGACCGAATT
* * *
120973384 ATAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGATC-TTAACCCCCTAAGC
130 ACAGATCTTATC-CCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCACCTAAGC
*
120973448 AGTAGGGAAAC-AGATCGAAGATG
194 AGTAGGGAAACAAG-CCGAA-ATG
*** * * * *
120973471 ATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACA-AGCCTTAACCCCCTAA
1 ACAAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-TCTTAACCCCCTAA
* *
120973533 GTAGTAGGGTAACAG
64 GCAGTAGGGAAACAG
120973548 GCTGAAGATT
Statistics
Matches: 266, Mismatches: 22, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
215 93 0.35
216 107 0.40
217 44 0.17
218 22 0.08
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (215 bp):
ACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGC
AGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCTAATCGGTAGGGTAACAGACCGAATTA
CAGATCTTATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAGCTTTAACCACCTAAGCAG
TAGGGAAACAAGCCGAAATG
Found at i:120973597 original size:132 final size:132
Alignment explanation
Indices: 120973169--120973723 Score: 788
Period size: 132 Copynumber: 4.2 Consensus size: 132
120973159 GACCGAATTG
* *
120973169 CAGATCTT-ATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCACCTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
*
120973233 GTAGGGTAACAAGCCGAATTTACAAGCCTTAA-ACCCTAAGCAGTAGGGTAACAGGCTGAAGATT
66 GTAGGGTAACAAGCCGAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATT
120973297 TA
131 TA
* * * *
120973299 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATC
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCT-TTAACCCCCTAAGC
* * * * * * * *
120973363 GGTAGGGTAAC-AGATCGAA-TTA-TAGATCTTATCTCCCTAAGCAGTAGGGAAACA-GATCGAA
65 AGTAGGGTAACAAG-CCGAATTTACAAG-CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAA
*
120973424 GA-TGA
127 GATTTA
120973429 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
* *
120973493 GTAGGGTAACAAGCCAAATTTACAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATT
66 GTAGGGTAACAAGCCGAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATT
120973558 TA
131 TA
*
120973560 CAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
* *
120973625 GTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATT
66 GTAGGGTAACAAGCCGAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATT
120973690 TA
131 TA
* * *
120973692 CAAATCTTAA-CCCCTAACCAGTAGGGTAACAG
1 CAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
120973724 GTTGAATTTA
Statistics
Matches: 373, Mismatches: 39, Indels: 25
0.85 0.09 0.06
Matches are distributed among these distances:
129 72 0.19
130 56 0.15
131 110 0.29
132 135 0.36
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (132 bp):
CAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCA
GTAGGGTAACAAGCCGAATTTACAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATT
TA
Done.