Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 400 of 410
Found at i:120973810 original size:87 final size:87
Alignment explanation
Indices: 120973218--120973812 Score: 474
Period size: 87 Copynumber: 6.8 Consensus size: 87
120973208 ATGATGGGCT
* * * * * *
120973218 TTAACCACCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAGCCTTAAA-CCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGA-TCGAAGATGACAGGCCTTAAACCCCTAAGCAGTAGG
*
120973280 GTAACAGGCTGAAGATTTACAGATC
65 GTAACAGGCCG-A-ATTTACAGATC
* * * *
120973305 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGTCTTAAACCCCTAATCGGTAGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACA-GGCCTTAAACCCCTAAGCAGTAGG
** *
120973369 GTAACAGATCGAA-TTATAGATC
65 GTAACAGGCCGAATTTACAGATC
* * ** *
120973391 TTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGATCTTAACCCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACAGGCCTTAAACCCCTAAGCAGTAGGG
* ** * * * **
120973455 AAACAGATCGAAGATGA-TGGGC
66 TAACAGGCCGAA-TTTACAGATC
* * * * * * *
120973477 TTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACAAGCCTTAACCCCCTAAGTAGTAG
1 -TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGACAGGCCTTAAACCCCTAAGCAGTAG
*
120973540 GGTAACAGGCTGAAGATTTACAGATC
64 GGTAACAGGCCG-A-ATTTACAGATC
* ** * *
120973566 TTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACAGGCCTTAAACCCCTAAGCAGTAGGG
* * *
120973631 TAACAAGCCGAATTTACAAACC
66 TAACAGGCCGAATTTACAGATC
* * * * *** *
120973653 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAATCTT-AACCCCTAACCAGTAG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGACAGGCCTTAAACCCCTAAGCAGTAG
**
120973716 GGTAACAGGTTGAATTTACAGATC
64 GGTAACAGGCCGAATTTACAGATC
* * * * ** *
120973740 TTAACCCCTTAAACAGTTGGGAAATAGATCGAAGATGATGGGCCTTAAACCCCTAAGTAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACAGGCCTTAAACCCCTAAGCAGTAGGG
120973805 TAACAGGC
66 TAACAGGC
120973813 TGGAAATTAC
Statistics
Matches: 397, Mismatches: 93, Indels: 36
0.75 0.18 0.07
Matches are distributed among these distances:
85 33 0.08
86 58 0.15
87 203 0.51
88 43 0.11
89 59 0.15
90 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (87 bp):
TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACAGGCCTTAAACCCCTAAGCAGTAGGG
TAACAGGCCGAATTTACAGATC
Found at i:120973945 original size:68 final size:68
Alignment explanation
Indices: 120973828--120974026 Score: 294
Period size: 68 Copynumber: 2.9 Consensus size: 68
120973818 ATTACAAATT
*
120973828 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
*
120973891 AGGA
66 A-AA
* * *
120973895 TCTTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTTAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
120973960 AAA
66 AAA
* * * *
120973963 CCTCTTCTTCCAGAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
120974027 TGGAAGAAGA
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
67 6 0.05
68 111 0.94
69 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (68 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
AAA
Found at i:120974186 original size:44 final size:44
Alignment explanation
Indices: 120974138--120974778 Score: 572
Period size: 44 Copynumber: 14.6 Consensus size: 44
120974128 GATTTCAGCA
* *
120974138 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
120974182 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * *
120974226 TGACATTCCTGTGCTTACAGTGAAGC-AGATTGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAG-TTGAAAATATCAG-ATT
* *
120974270 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
120974314 TGGCATCCCTGTGCTTATA-GGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
120974357 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
* *
120974401 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
120974445 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
120974489 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
120974533 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * *
120974577 TGGCATCCCTGTGCTTATAGGGAACAA-ATCAAAGATAACAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAA-ATATCAGATT
* * * * * * *
120974621 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
120974665 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
*
120974709 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
120974753 TGGCATCCCTGTGCTTATAGGGAACA
1 TGGCATCCCTGTGCTTATAGGGAACA
120974779 GATCGAAGAT
Statistics
Matches: 482, Mismatches: 89, Indels: 52
0.77 0.14 0.08
Matches are distributed among these distances:
42 4 0.01
43 66 0.14
44 372 0.77
45 36 0.07
46 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
Found at i:120974808 original size:44 final size:44
Alignment explanation
Indices: 120974074--120974836 Score: 570
Period size: 44 Copynumber: 17.3 Consensus size: 44
120974064 TGTAGAGGAG
* ** ** * *
120974074 CAGACCGAAGATAGCAGATCTAACATTTCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
**
120974118 GCAGATCGAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAA
* * * *
120974162 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974206 CAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* **
120974250 GCAGATTGAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAA
* * * *
120974294 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA-GGAA
1 CAGA-TCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974337 CAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* **
120974381 GCAGATCAAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAA
* * * *
120974425 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974469 CAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* **
120974513 GCAGATCAAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974557 CA-AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* * * * * * *
120974601 CAAATCAAAGATAACAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* **
120974645 GCAGATCAAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGCAGATC-TGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974689 CA-AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974733 CA-AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
* * * * *
120974777 CAGATCGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
*
120974821 GCAGATCAAAGATAGC
1 -CAGATCGAAGATAGC
120974837 GGATATCGCC
Statistics
Matches: 572, Mismatches: 115, Indels: 62
0.76 0.15 0.08
Matches are distributed among these distances:
42 5 0.01
43 89 0.16
44 393 0.69
45 85 0.15
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (44 bp):
CAGATCGAAGATAGCAGATCTGGCATCCCTGTGCTTATAGGGAA
Found at i:120974813 original size:132 final size:132
Alignment explanation
Indices: 120974079--120974788 Score: 1226
Period size: 132 Copynumber: 5.4 Consensus size: 132
120974069 AGGAGCAGAC
* * *
120974079 CGAAGATAGCAGATCTAACATTTCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
120974144 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
120974209 AT
131 AT
**
120974211 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATTGAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
120974276 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA-GGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
120974340 AT
131 AT
120974342 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
120974407 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
120974472 AT
131 AT
120974474 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
120974539 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
120974604 AT
131 AT
* *
120974606 CAAAGATAACAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
*
120974671 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
66 CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
*
120974736 GT
131 AT
* * * * * * * * * *
120974738 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAGAT
1 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
120974789 AGCAAATCTG
Statistics
Matches: 557, Mismatches: 20, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
131 140 0.25
132 417 0.75
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCAT
CCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAA
AT
Found at i:120975211 original size:22 final size:22
Alignment explanation
Indices: 120975171--120975212 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
120975161 TGGCCACCCA
*
120975171 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
120975193 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
120975213 CCAACCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:120975336 original size:22 final size:23
Alignment explanation
Indices: 120975283--120975383 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 23
120975273 GGGTTTTGGT
120975283 TTTTTTGGAGGAGGATTGTTCTTTG
1 TTTTTTGGAGGAGG-TTGTT-TTTG
120975308 --TTTTGGAGGAGGTT-TTTTTG
1 TTTTTTGGAGGAGGTTGTTTTTG
*
120975328 TTTTTTGGAGG-TGTT-TTTTTG
1 TTTTTTGGAGGAGGTTGTTTTTG
*
120975349 TTTTTTTGGAAAGAAGGTTGTTTTTG
1 -TTTTTTGG--AGGAGGTTGTTTTTG
*
120975375 TTTCTTGGA
1 TTTTTTGGA
120975384 AAGGCTAGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
20 4 0.06
21 11 0.17
22 19 0.29
23 13 0.20
24 2 0.03
25 10 0.15
26 6 0.09
ACGTcount: A:0.12, C:0.02, G:0.30, T:0.56
Consensus pattern (23 bp):
TTTTTTGGAGGAGGTTGTTTTTG
Found at i:120975339 original size:19 final size:21
Alignment explanation
Indices: 120975308--120975354 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
120975298 TTGTTCTTTG
*
120975308 TTTTGGAGGAGGTTTTTTTGTT
1 TTTTGGAGG-TGTTTTTTTGTT
120975330 TTTTGGAGGTGTTTTTTTGTT
1 TTTTGGAGGTGTTTTTTTGTT
120975351 TTTT
1 TTTT
120975355 TGGAAAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.06, C:0.00, G:0.28, T:0.66
Consensus pattern (21 bp):
TTTTGGAGGTGTTTTTTTGTT
Found at i:120975353 original size:20 final size:21
Alignment explanation
Indices: 120975284--120975353 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 21
120975274 GGTTTTGGTT
120975284 TTTTTGGAGGAGGATTGTTCTTTG
1 TTTTTGGAGGAGG-TT-TT-TTTG
120975308 -TTTTGGAGGAGGTTTTTTTG
1 TTTTTGGAGGAGGTTTTTTTG
*
120975328 TTTTTTGGAGG-TGTTTTTTTG
1 -TTTTTGGAGGAGGTTTTTTTG
120975349 TTTTT
1 TTTTT
120975354 TTGGAAAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
20 9 0.21
21 11 0.26
22 11 0.26
23 12 0.28
ACGTcount: A:0.09, C:0.01, G:0.30, T:0.60
Consensus pattern (21 bp):
TTTTTGGAGGAGGTTTTTTTG
Found at i:120975354 original size:23 final size:23
Alignment explanation
Indices: 120975276--120975355 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 23
120975266 TAGATGGGGG
* **
120975276 TTTTGGTTTTTTTGGAGGAGGAT
1 TTTTGTTTTTTTTGGAGGAGTTT
* * *
120975299 TGTTCTTTGTTTTGGAGGAGGTTT
1 TTTTGTTTTTTTTGGAGGA-GTTT
*
120975323 TTTTG--TTTTTTGGAGGTGTTT
1 TTTTGTTTTTTTTGGAGGAGTTT
120975344 TTTTGTTTTTTT
1 TTTTGTTTTTTT
120975356 GGAAAGAAGG
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
21 9 0.20
22 10 0.23
23 20 0.45
24 5 0.11
ACGTcount: A:0.07, C:0.01, G:0.29, T:0.62
Consensus pattern (23 bp):
TTTTGTTTTTTTTGGAGGAGTTT
Found at i:120975697 original size:3 final size:3
Alignment explanation
Indices: 120975683--120975766 Score: 66
Period size: 3 Copynumber: 27.3 Consensus size: 3
120975673 GAGCTTTGTT
* *
120975683 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
120975727 TTC TCA TGTA TATA TTA TTA TT- TATA TTA TTA TATA TTA T
1 TTA TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA T-TA TTA T
120975767 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
2 4 0.06
3 51 0.78
4 10 0.15
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:120976010 original size:2 final size:2
Alignment explanation
Indices: 120976003--120976033 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
120975993 TATTTTTATG
120976003 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120976034 GTATTGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120976174 original size:21 final size:21
Alignment explanation
Indices: 120976144--120976183 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
120976134 TATACATATA
*
120976144 TATATATATATATATTATTGT
1 TATATATATATATAGTATTGT
*
120976165 TATATTTATATATAGTATT
1 TATATATATATATAGTATT
120976184 ATTGTTTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
TATATATATATATAGTATTGT
Found at i:120976196 original size:24 final size:23
Alignment explanation
Indices: 120976142--120976214 Score: 78
Period size: 23 Copynumber: 3.1 Consensus size: 23
120976132 TATATACATA
*
120976142 TATATATATATATATATTATTGT
1 TATATTTATATATATATTATTGT
120976165 TATATTTATATATAGTATTATTGT
1 TATATTTATATATA-TATTATTGT
* *
120976189 T-TACTTTACTTTA-ATATTATTCT
1 TATA-TTTA-TATATATATTATTGT
120976212 TAT
1 TAT
120976215 TATCATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
23 24 0.56
24 16 0.37
25 3 0.07
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (23 bp):
TATATTTATATATATATTATTGT
Found at i:120979150 original size:33 final size:33
Alignment explanation
Indices: 120979113--120979185 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
120979103 TTCAACAATT
120979113 TTTTTTATGTTATTGACACATAATTTTGGTAAC
1 TTTTTTATGTTATTGACACATAATTTTGGTAAC
* *
120979146 TTTTTTTTGTTATTGACACATAATTTTGGTAAT
1 TTTTTTATGTTATTGACACATAATTTTGGTAAC
120979179 TTTTTTA
1 TTTTTTA
120979186 CTCTGAATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.25, C:0.07, G:0.11, T:0.58
Consensus pattern (33 bp):
TTTTTTATGTTATTGACACATAATTTTGGTAAC
Found at i:120980637 original size:5 final size:5
Alignment explanation
Indices: 120980627--120980658 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
120980617 AATTTGTGTG
120980627 TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TT
120980659 TCATAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:120985039 original size:5 final size:5
Alignment explanation
Indices: 120985029--120985060 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
120985019 AATTTGTGTG
120985029 TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TT
120985061 TCACAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:120985130 original size:14 final size:14
Alignment explanation
Indices: 120985111--120985139 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
120985101 GTAAACTCAA
120985111 TTACATAATAAATT
1 TTACATAATAAATT
120985125 TTACATAATAAATT
1 TTACATAATAAATT
120985139 T
1 T
120985140 AGTAACCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (14 bp):
TTACATAATAAATT
Found at i:120985218 original size:57 final size:59
Alignment explanation
Indices: 120985155--120985268 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 59
120985145 CCTTTAGCAC
* *
120985155 GATACAATCAC-A-CAAGTAACCATAACATAGTAATATAATACGAGAATGCAGATCTTG
1 GATACAATCACAATCAAGTAACCATAACATAGTAATACAACACGAGAATGCAGATCTTG
* *
120985212 GATACAATCACAATTTTAAGTAACCATAACATAGTAATACAACACGAGAATGTAGAT
1 GATACAATCACAA--TCAAGTAACCATAACATAGTAATACAACACGAGAATGCAGAT
120985269 TTTGATTATA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 11 0.22
58 1 0.02
61 37 0.76
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (59 bp):
GATACAATCACAATCAAGTAACCATAACATAGTAATACAACACGAGAATGCAGATCTTG
Found at i:120986250 original size:26 final size:26
Alignment explanation
Indices: 120986214--120986321 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
120986204 GAAATTTCCA
*
120986214 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
*
120986240 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
120986266 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
120986292 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
120986318 ATCA
1 ATCA
120986322 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:120993495 original size:35 final size:38
Alignment explanation
Indices: 120993432--120993503 Score: 114
Period size: 35 Copynumber: 2.0 Consensus size: 38
120993422 TTCTAATTAT
120993432 TTTATAAATTCATAATCCAAATAGGTTATGTGAAAAAA
1 TTTATAAATTCATAATCCAAATAGGTTATGTGAAAAAA
*
120993470 TTTAT-AATTC-T-ATCCAAATATGTTATGTGAAAAA
1 TTTATAAATTCATAATCCAAATAGGTTATGTGAAAAA
120993504 GATAATAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 22 0.67
36 1 0.03
37 5 0.15
38 5 0.15
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (38 bp):
TTTATAAATTCATAATCCAAATAGGTTATGTGAAAAAA
Found at i:120994781 original size:26 final size:22
Alignment explanation
Indices: 120994747--120994797 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 22
120994737 GTTATTAAAT
120994747 TTTAATAATATTATTATTAAATATAA
1 TTTAATAAT-TT-TT-TT-AATATAA
120994773 TTTAATAATTTTTTTAATATAA
1 TTTAATAATTTTTTTAATATAA
120994795 TTT
1 TTT
120994798 TTTATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.40
23 2 0.08
24 2 0.08
25 2 0.08
26 9 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTAATAATTTTTTTAATATAA
Found at i:120994953 original size:17 final size:17
Alignment explanation
Indices: 120994931--120994997 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 17
120994921 TGGTAATACC
*
120994931 AAAAAATAACTATTACA
1 AAAAAATAAATATTACA
* *
120994948 AAAAAATAAATAATAGA
1 AAAAAATAAATATTACA
* *
120994965 AATAAAATAATTATTTC-
1 AA-AAAATAAATATTACA
**
120994982 ATTAAATAAATATTAC
1 AAAAAATAAATATTAC
120994998 GTTTAATCAA
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
16 11 0.29
17 17 0.45
18 10 0.26
ACGTcount: A:0.63, C:0.06, G:0.01, T:0.30
Consensus pattern (17 bp):
AAAAAATAAATATTACA
Found at i:120998225 original size:21 final size:23
Alignment explanation
Indices: 120998187--120998241 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
120998177 AAGAAAGAAA
120998187 ATACATAT-TAATAAT-AA-ATAT
1 ATACATATAT-ATAATAAAGATAT
* *
120998208 GTACATATATATATTAAAGATAT
1 ATACATATATATAATAAAGATAT
120998231 ATACATATATA
1 ATACATATATA
120998242 ATAGACATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 11 0.39
22 3 0.11
23 14 0.50
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (23 bp):
ATACATATATATAATAAAGATAT
Found at i:120998251 original size:19 final size:17
Alignment explanation
Indices: 120998210--120998252 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
120998200 ATAAATATGT
*
120998210 ACATATATATATTAAAG
1 ACATATACATATTAAAG
*
120998227 ATATATACATATATAATAG
1 ACATATACATAT-TAA-AG
120998246 ACATATA
1 ACATATA
120998253 TTAATAATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 10 0.48
18 3 0.14
19 8 0.38
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (17 bp):
ACATATACATATTAAAG
Found at i:120998344 original size:26 final size:27
Alignment explanation
Indices: 120998301--120998354 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
120998291 TATGTACACC
* * *
120998301 AAATAATACATAATAATA-TTAAAATA
1 AAATAATAAATAACAATAGTGAAAATA
*
120998327 AAATAATAAATGACAATAGTGAAAATA
1 AAATAATAAATAACAATAGTGAAAATA
120998354 A
1 A
120998355 TAAGTATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.26
Consensus pattern (27 bp):
AAATAATAAATAACAATAGTGAAAATA
Found at i:120998475 original size:21 final size:21
Alignment explanation
Indices: 120998449--120998488 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
120998439 TAATATCAAT
120998449 AATAAATATAATAAGAATAAA
1 AATAAATATAATAAGAATAAA
*
120998470 AATAAATATAATAATAATA
1 AATAAATATAATAAGAATA
120998489 TACACATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (21 bp):
AATAAATATAATAAGAATAAA
Found at i:120998727 original size:23 final size:22
Alignment explanation
Indices: 120998698--120998740 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
120998688 AATAGTAATG
*
120998698 GTATTAGAAGTATATAATATATA
1 GTATTAGAAATATAT-ATATATA
120998721 GTATTAGAAATATATATATA
1 GTATTAGAAATATATATATA
120998741 AAACAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.40
Consensus pattern (22 bp):
GTATTAGAAATATATATATATA
Found at i:120998796 original size:2 final size:2
Alignment explanation
Indices: 120998777--120998826 Score: 68
Period size: 2 Copynumber: 26.0 Consensus size: 2
120998767 TGACATTAAA
*
120998777 AT AT AT AC AT A- AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
120998817 AT AT AA AT AT
1 AT AT AT AT AT
120998827 TAGGAGACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:120998975 original size:23 final size:24
Alignment explanation
Indices: 120998944--120998997 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
120998934 TTGATAATAC
120998944 TACA-TAAATATATACACATAT-A
1 TACATTAAATATATACACATATAA
*
120998966 TACATTAAATATATACATATATAA
1 TACATTAAATATATACACATATAA
120998990 TAACATTA
1 T-ACATTA
120998998 TACACTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 16 0.57
24 2 0.07
25 6 0.21
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (24 bp):
TACATTAAATATATACACATATAA
Found at i:120999001 original size:19 final size:21
Alignment explanation
Indices: 120998944--120998988 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
120998934 TTGATAATAC
120998944 TACA-TAAATATATACACATATA
1 TACATTAAATATAT--ACATATA
120998966 TACATTAAATATATACATATA
1 TACATTAAATATATACATATA
120998987 TA
1 TA
120998989 ATAACATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 4 0.18
23 9 0.41
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TACATTAAATATATACATATA
Found at i:121000997 original size:88 final size:87
Alignment explanation
Indices: 121000701--121001114 Score: 410
Period size: 88 Copynumber: 4.7 Consensus size: 87
121000691 TACTCGGCAT
** * * * * *
121000701 GTGATCCTGA-GCTCAACTCATTTCTCGAAATATGAATTGACTCTTT-AAAAACAGATATT-AAA
1 GTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAAA
* * * *
121000763 AACAAAAATTGAAGATAGCTCAGCAC
64 AATAGAAATTGAAAATACCTCAG--C
* * * * *
121000789 GTGAACC-AAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTG--AAACTTAATTTGAAAA
1 GTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAA
* **
121000851 TTAGATTTTGAAAATACCTC-GAC
65 ATAGAAATTGAAAATACCTCAG-C
* *
121000874 ATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAA
1 --GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTG-AA
*
121000939 AAACAGAAATTGAAAATACCTCAGC
63 AAATAGAAATTGAAAATACCTCAGC
* * * * *
121000964 GTGTCCTGAGGCTCAATTCACCTCTCGCGATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAAAA
*
121001029 GTAGAAATTGAAAATACCTCAGC
65 ATAGAAATTGAAAATACCTCAGC
* * *
121001052 GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAA
121001115 TTACCTCAGC
Statistics
Matches: 270, Mismatches: 44, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
85 2 0.01
86 11 0.04
87 81 0.30
88 127 0.47
89 27 0.10
90 21 0.08
91 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (87 bp):
GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAAAAA
TAGAAATTGAAAATACCTCAGC
Found at i:121001027 original size:14 final size:14
Alignment explanation
Indices: 121001008--121001042 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
121000998 AGTTGATTTT
121001008 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
*
121001022 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
121001036 TTGAAAA
1 TTGAAAA
121001043 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:121001083 original size:176 final size:174
Alignment explanation
Indices: 121000711--121001114 Score: 444
Period size: 175 Copynumber: 2.3 Consensus size: 174
121000701 GTGATCCTGA
** * * * * * *
121000711 GCTCAACTCATTTCTCGAAATATGAATTGACTCTTT-AAAAACAGATATT--AAAAACAAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAAATTGAAAAAACAGAAATT
* * * *
121000773 GAAGATAGCTCAGCACGTGAACC-AAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTGAA
65 GAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTGAA
** * * **
121000837 ACTTAATTTGAAAATTAGATTTTGAAAATACCTCGACATGTGACCCGAG
127 ACAGAAATTGAAAAGTAGAAATTGAAAATACCTCGACA-GTGACCCGAG
* *
121000886 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAAAACAGAAATTG
* * * *
121000951 AAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCGATATGAGTTGATTTTTTGAAAAG
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG-GTTTTTG-AAA-
121001016 CAGAAATTGAAAAGTAGAAATTGAAAATACCTC-AGC-GTG-CCCTGAG
128 CAGAAATTGAAAAGTAGAAATTGAAAATACCTCGA-CAGTGACCC-GAG
*
121001062 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAA
121001115 TTACCTCAGC
Statistics
Matches: 194, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
174 6 0.03
175 71 0.37
176 62 0.32
177 27 0.14
178 28 0.14
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (174 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAAAACAGAAATTG
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTGAAACAG
AAATTGAAAAGTAGAAATTGAAAATACCTCGACAGTGACCCGAG
Found at i:121001152 original size:73 final size:72
Alignment explanation
Indices: 121001033--121001519 Score: 723
Period size: 73 Copynumber: 6.7 Consensus size: 72
121001023 TGAAAAGTAG
121001033 AAATTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
121001097 GACAAACAA
65 GA-AAACAT
* * *
121001106 AAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
121001171 TG-AAACAT
64 TGAAAACAT
121001179 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
121001244 G-AAACAT
65 GAAAACAT
* *
121001251 AAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCTCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
121001316 ACAAACAG
66 A-AAACAT
* * * * *
121001324 AAATTGAAATTACCTCAGCGTATCCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGGTTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTT
121001389 TGAAAA-AT
64 TGAAAACAT
121001397 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
121001462 TG-AAACAT
64 TGAAAACAT
* *
121001470 AAATTGAAAATACCTCAGCATGTCCCGAGGCTCATCTCACCTCTCGCAAT
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
121001520 GTAGCACCCC
Statistics
Matches: 379, Mismatches: 25, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
71 6 0.02
72 74 0.20
73 279 0.74
74 7 0.02
75 13 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAACAT
Found at i:121001411 original size:218 final size:219
Alignment explanation
Indices: 121001033--121001519 Score: 879
Period size: 218 Copynumber: 2.2 Consensus size: 219
121001023 TGAAAAGTAG
121001033 AAATTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
121001097 GACAAACAAAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACTTCTCGCAATATGAGT
65 GACAAACAAAAATTGAAATTACCTCAGCGTATCCCAAGGCTCAACTCACTTCTCGCAATATGAGT
*
121001162 TGATTTTTTTGAAACATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
130 TGATTTTTTTGAAAAATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
121001227 ATATGAGTTGA-TTTTTTGAAACAT
195 ATATGAGTTGATTTTTTTGAAACAT
* *
121001251 AAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCTCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
121001316 ACAAACAGAAATTGAAATTACCTCAGCGTATCCCAAGGCTCAACTCACTTCTCGCAATATGAGTT
66 ACAAACAAAAATTGAAATTACCTCAGCGTATCCCAAGGCTCAACTCACTTCTCGCAATATGAGTT
*
121001381 GGTTTTTTTGAAAAATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
131 GATTTTTTTGAAAAATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
121001446 TATGAGTTGATTTTTTTGAAACAT
196 TATGAGTTGATTTTTTTGAAACAT
* *
121001470 AAATTGAAAATACCTCAGCATGTCCCGAGGCTCATCTCACCTCTCGCAAT
1 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
121001520 GTAGCACCCC
Statistics
Matches: 257, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
218 195 0.76
219 62 0.24
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (219 bp):
AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
ACAAACAAAAATTGAAATTACCTCAGCGTATCCCAAGGCTCAACTCACTTCTCGCAATATGAGTT
GATTTTTTTGAAAAATAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTGAAACAT
Found at i:121002480 original size:136 final size:136
Alignment explanation
Indices: 121002248--121002520 Score: 546
Period size: 136 Copynumber: 2.0 Consensus size: 136
121002238 GCCCATTCAA
121002248 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
121002313 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
121002378 ATTTGG
131 ATTTGG
121002384 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
121002449 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
121002514 ATTTGG
131 ATTTGG
121002520 G
1 G
121002521 GAGACTACTC
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
136 137 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCC
ATTTGG
Found at i:121002556 original size:21 final size:21
Alignment explanation
Indices: 121002527--121002574 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
121002517 TGGGGAGACT
*
121002527 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
121002548 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
121002569 ACTCCA
1 ACTCCA
121002575 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:121004340 original size:26 final size:26
Alignment explanation
Indices: 121004304--121004439 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
121004294 CATGATATTC
121004304 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
121004330 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
121004356 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
121004382 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
121004408 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
121004434 TTATCA
1 TTATCA
121004440 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:121017957 original size:18 final size:17
Alignment explanation
Indices: 121017918--121017956 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
121017908 CCTAAAGGTG
*
121017918 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
121017935 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
121017952 ATTTT
1 ATTTT
121017957 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:121017962 original size:13 final size:12
Alignment explanation
Indices: 121017944--121017977 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
121017934 TATTTTACTC
121017944 TTATTTTTATTTT
1 TTATTTTT-TTTT
121017957 TTATTTTTTTTT
1 TTATTTTTTTTT
121017969 TT-TTTTTTT
1 TTATTTTTTT
121017978 CGAATCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 6 0.29
13 8 0.38
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (12 bp):
TTATTTTTTTTT
Found at i:121018235 original size:29 final size:29
Alignment explanation
Indices: 121018179--121018235 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
121018169 TCTCTTCTTT
* *
121018179 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
121018208 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
121018236 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:121022744 original size:12 final size:12
Alignment explanation
Indices: 121022727--121022762 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
121022717 AACATTTTGA
121022727 CATTCATGCATT
1 CATTCATGCATT
121022739 CATTCATGCATT
1 CATTCATGCATT
*
121022751 CATTCATACATT
1 CATTCATGCATT
121022763 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:121030480 original size:72 final size:72
Alignment explanation
Indices: 121030358--121030733 Score: 397
Period size: 72 Copynumber: 5.2 Consensus size: 72
121030348 AAGCCTTTTT
* * * * * *
121030358 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
121030423 ATTTTCA
66 ATTTTCA
* **
121030430 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
121030495 AATTTCA
66 ATTTTCA
* ** * * * * *
121030502 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCACACGCCG
1 ATTTTTG-TGT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTG
121030567 AGGTATTTTCA
62 AGGTATTTTCA
*
121030578 A-TTTT-TG---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
1 ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
121030638 AATTTCA
66 ATTTTCA
* * ** * * *
121030645 ATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACACGTTGAGG
1 ATTTTTGTGTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
121030709 TATTTTCA
65 TATTTTCA
*
121030717 ATTTCTGT-TTTCAAAAA
1 ATTTTTGTGTTT-AAAAA
121030734 AAAAAAAATC
Statistics
Matches: 255, Mismatches: 39, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
67 18 0.07
68 3 0.01
69 37 0.15
72 137 0.54
73 5 0.02
74 34 0.13
75 3 0.01
76 18 0.07
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (72 bp):
ATTTTTGTGTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCA
Found at i:121030628 original size:143 final size:144
Alignment explanation
Indices: 121030371--121030675 Score: 422
Period size: 143 Copynumber: 2.1 Consensus size: 144
121030361 TTTGTTTTTC
* * *
121030371 AAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCAAGAGGCGAGTCGAACCTCAGGTCACGCCGAGGTATTTTCAATTTTT
* **
121030436 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 GTG--TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
121030501 AATTTCTGTTGTCAAA
129 AATTTCTGTTGTCAAA
* * * *
121030517 AAAATCAACTCGTATTGCAAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA-TT
1 AAAATCAACTCATATTGCAAGAGGCGAGTCGAACCTCAGGT--CACGCCGAGGTATTTTCAATTT
*
121030581 TT-TG-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
64 TTGTGTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
121030644 AATTTCTGTTTTC--A
129 AATTTCTGTTGTCAAA
*
121030658 AAATTCAACTCATATTGC
1 AAAATCAACTCATATTGC
121030676 GAGAAATGAG
Statistics
Matches: 143, Mismatches: 14, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
141 17 0.12
143 67 0.47
146 37 0.26
147 4 0.03
148 18 0.13
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (144 bp):
AAAATCAACTCATATTGCAAGAGGCGAGTCGAACCTCAGGTCACGCCGAGGTATTTTCAATTTTT
GTGTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTCAAA
Found at i:121031839 original size:18 final size:17
Alignment explanation
Indices: 121031800--121031838 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
121031790 CCTAAAGGTG
*
121031800 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
121031817 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
121031834 ATTTT
1 ATTTT
121031839 TTATTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:121031859 original size:14 final size:16
Alignment explanation
Indices: 121031800--121031861 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 16
121031790 CCTAAAGGTG
*
121031800 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTT-TT
121031817 ATTTTACTCTTATTTTT
1 ATTTTA-TCTTATTTTT
121031834 A-TTT-T-TTATTTTTT
1 ATTTTATCTTA-TTTTT
121031848 ATTTT-TCTT-TTTTT
1 ATTTTATCTTATTTTT
121031862 TTCGAATCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
13 3 0.08
14 12 0.30
15 4 0.10
16 5 0.12
17 9 0.22
18 7 0.17
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTATCTTATTTTT
Found at i:121031860 original size:7 final size:7
Alignment explanation
Indices: 121031829--121031853 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
121031819 TTTACTCTTA
121031829 TTTTTAT
1 TTTTTAT
121031836 TTTTTAT
1 TTTTTAT
121031843 TTTTTAT
1 TTTTTAT
121031850 TTTT
1 TTTT
121031854 CTTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:121032127 original size:29 final size:29
Alignment explanation
Indices: 121032071--121032127 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
121032061 TCTCTTCTTT
* *
121032071 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
121032100 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
121032128 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:121038566 original size:12 final size:12
Alignment explanation
Indices: 121038549--121038580 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
121038539 TATTTTACCC
121038549 AATTTCTTCAAT
1 AATTTCTTCAAT
121038561 AATTTCTTCAAT
1 AATTTCTTCAAT
121038573 AATTTCTT
1 AATTTCTT
121038581 TTTCTAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:121047971 original size:25 final size:25
Alignment explanation
Indices: 121047927--121048008 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 25
121047917 ACATGAATTC
121047927 TTATCAT-GAAACTTTACCTAA-CCA
1 TTATCATGGAAA-TTTACCTAACCCA
*
121047951 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGGAA-ATTTACCTAACCCA
121047977 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAA-ATTTACCTAACCCA
121048003 TTATCA
1 TTATCA
121048009 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
24 7 0.13
25 12 0.23
26 34 0.64
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (25 bp):
TTATCATGGAAATTTACCTAACCCA
Found at i:121051886 original size:91 final size:91
Alignment explanation
Indices: 121051731--121051913 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
121051721 TGGTACTGGG
121051731 CCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCC
1 CCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCC
121051796 ATAGGCCCATTTCAAAATACATGCAA
66 ATAGGCCCATTTCAAAATACATGCAA
121051822 CCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCC
1 CCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCC
121051887 ATAGGCCCATTTCAAAATACATGCAA
66 ATAGGCCCATTTCAAAATACATGCAA
121051913 C
1 C
121051914 ATCAGTAAAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (91 bp):
CCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCC
ATAGGCCCATTTCAAAATACATGCAA
Found at i:121052214 original size:25 final size:27
Alignment explanation
Indices: 121052177--121052229 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
121052167 TCAAACATGC
121052177 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
121052203 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
121052229 A
1 A
121052230 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:121053750 original size:25 final size:25
Alignment explanation
Indices: 121053710--121053790 Score: 144
Period size: 25 Copynumber: 3.2 Consensus size: 25
121053700 ACATGAATTC
*
121053710 TTATCATGAAACATTTACCTAACCA
1 TTATCATGGAACATTTACCTAACCA
*
121053735 TTATCATGGAATATTTACCTAACCA
1 TTATCATGGAACATTTACCTAACCA
121053760 TTATCATGGAACATTTACCTAACCA
1 TTATCATGGAACATTTACCTAACCA
121053785 TTATCA
1 TTATCA
121053791 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (25 bp):
TTATCATGGAACATTTACCTAACCA
Found at i:121054196 original size:23 final size:24
Alignment explanation
Indices: 121054165--121054218 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
121054155 TTGATAATAC
121054165 TACA-TAAATATATACACATAT-A
1 TACATTAAATATATACACATATAA
*
121054187 TACATTAAATATATACATATATAA
1 TACATTAAATATATACACATATAA
121054211 TAACATTA
1 T-ACATTA
121054219 TACACTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 16 0.57
24 2 0.07
25 6 0.21
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (24 bp):
TACATTAAATATATACACATATAA
Found at i:121054222 original size:19 final size:21
Alignment explanation
Indices: 121054165--121054209 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
121054155 TTGATAATAC
121054165 TACA-TAAATATATACACATATA
1 TACATTAAATATAT--ACATATA
121054187 TACATTAAATATATACATATA
1 TACATTAAATATATACATATA
121054208 TA
1 TA
121054210 ATAACATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 4 0.18
23 9 0.41
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TACATTAAATATATACATATA
Found at i:121056786 original size:25 final size:24
Alignment explanation
Indices: 121056717--121056787 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 24
121056707 TATGTTAATC
*
121056717 ATTTTAAATTCCTTTTATTATTATTT
1 ATTTTAAATT-CTTTTA-TATTACTT
* *
121056743 ATTTTGAACTT-TCTATATATTACTT
1 ATTTT-AAATTCT-TTTATATTACTT
121056768 ATTTTAAAATTCTTTTATAT
1 ATTTT-AAATTCTTTTATAT
121056788 ACTCCTCATC
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
25 23 0.64
26 9 0.25
27 4 0.11
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.61
Consensus pattern (24 bp):
ATTTTAAATTCTTTTATATTACTT
Found at i:121056841 original size:6 final size:6
Alignment explanation
Indices: 121056832--121056859 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
121056822 TTACTTTGGA
121056832 TTATAT TTATAT TTATAT TTATAT TTAT
1 TTATAT TTATAT TTATAT TTATAT TTAT
121056860 TTATTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:121056926 original size:29 final size:27
Alignment explanation
Indices: 121056860--121056928 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 27
121056850 TTATATTTAT
* **
121056860 TTATTTATTTTAAATTGTTTTTGTATA
1 TTATTTATTTTAAATTCTTTTTACATA
*
121056887 TAATTTATTTTAAATTTCTTATTTACATA
1 TTATTTATTTTAAA-TTCTT-TTTACATA
121056916 TTATTTATTTTAA
1 TTATTTATTTTAA
121056929 GCTCTTTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 13 0.37
28 4 0.11
29 18 0.51
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (27 bp):
TTATTTATTTTAAATTCTTTTTACATA
Found at i:121057020 original size:27 final size:28
Alignment explanation
Indices: 121056990--121057048 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
121056980 TATTCAATTT
*
121056990 AATTT-ATTTAACATATTA-TTTATTTGA
1 AATTTGATTT-ACATATTATTTTATTTAA
* *
121057017 AATTTGCTTTATATATTATTTTATTTAA
1 AATTTGATTTACATATTATTTTATTTAA
121057045 AATT
1 AATT
121057049 GTTTATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (28 bp):
AATTTGATTTACATATTATTTTATTTAA
Found at i:121057061 original size:26 final size:26
Alignment explanation
Indices: 121057002--121057071 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 26
121056992 TTTATTTAAC
*
121057002 ATATTATTTATTTGAAATTTGCTTTAT
1 ATATTATTTATTT-AAAATTGCTTTAT
121057029 ATATTATTTTATTTAAAATTG-TTTAT
1 ATATTA-TTTATTTAAAATTGCTTTAT
*
121057055 ATTTTATTTATGTTAAA
1 ATATTATTTAT-TTAAA
121057072 TCTTTTTCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.13
26 15 0.38
27 12 0.31
28 7 0.18
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.60
Consensus pattern (26 bp):
ATATTATTTATTTAAAATTGCTTTAT
Found at i:121058303 original size:16 final size:17
Alignment explanation
Indices: 121058281--121058322 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
121058271 CATTGTTGAG
121058281 AAACAACTCT-TATTCA
1 AAACAACTCTATATTCA
* *
121058297 GAACAACCTCTATATTGA
1 AAACAA-CTCTATATTCA
121058315 AAACAACT
1 AAACAACT
121058323 ATGTTGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 5 0.24
17 6 0.29
18 10 0.48
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (17 bp):
AAACAACTCTATATTCA
Found at i:121065332 original size:2 final size:2
Alignment explanation
Indices: 121065325--121065368 Score: 61
Period size: 2 Copynumber: 21.5 Consensus size: 2
121065315 TATGCCTTTA
* *
121065325 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
121065368 A
1 A
121065369 ATAATAAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121067920 original size:46 final size:46
Alignment explanation
Indices: 121067853--121067941 Score: 169
Period size: 46 Copynumber: 1.9 Consensus size: 46
121067843 AACGACATAA
121067853 TTTTAAGGGGATTATGGAGACCTCAAAACGGCGCCATTTGGCCTAG
1 TTTTAAGGGGATTATGGAGACCTCAAAACGGCGCCATTTGGCCTAG
*
121067899 TTTTAAGGGGATTATGGAGACCTCAAAACGGTGCCATTTGGCC
1 TTTTAAGGGGATTATGGAGACCTCAAAACGGCGCCATTTGGCC
121067942 CTTGACCTGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (46 bp):
TTTTAAGGGGATTATGGAGACCTCAAAACGGCGCCATTTGGCCTAG
Found at i:121068453 original size:22 final size:22
Alignment explanation
Indices: 121068428--121068475 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
121068418 CTTTTCATAC
* *
121068428 TTAT-TTACTTGTATTATTATTT
1 TTATATTAC-TGTATCATTAATT
121068450 TTATATTACTGTATCATTAATT
1 TTATATTACTGTATCATTAATT
121068472 TTAT
1 TTAT
121068476 GCTGTCATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (22 bp):
TTATATTACTGTATCATTAATT
Found at i:121076617 original size:6 final size:6
Alignment explanation
Indices: 121076606--121076660 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
121076596 CAACCCAATC
* *
121076606 TTTATT TTTATTTT TTTATT TTTTTT TTTA-T TTT-CT TTTATT TTTA-T
1 TTTATT TTTA--TT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
121076653 TTTATT TT
1 TTTATT TT
121076661 AGTTAAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
5 13 0.32
6 22 0.54
8 6 0.15
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:121076627 original size:5 final size:5
Alignment explanation
Indices: 121076606--121076661 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
121076596 CAACCCAATC
* * *
121076606 TTTATT TTTAT TTT-T TTATTT TTTTT TTTAT TTTCT TTTATT TTTAT
1 TTTA-T TTTAT TTTAT TT-TAT TTTAT TTTAT TTTAT TTTA-T TTTAT
121076653 TTTAT TTTA
1 TTTAT TTTA
121076662 GTTAAATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
4 3 0.07
5 29 0.66
6 12 0.27
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:121076632 original size:11 final size:11
Alignment explanation
Indices: 121076616--121076660 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
121076606 TTTATTTTTA
121076616 TTTTTTTATTT
1 TTTTTTTATTT
121076627 TTTTTTT-TATT
1 TTTTTTTAT-TT
*
121076638 TTCTTTTATTT
1 TTTTTTTATTT
*
121076649 TTATTTTATTT
1 TTTTTTTATTT
121076660 T
1 T
121076661 AGTTAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 1 0.03
11 28 0.93
12 1 0.03
ACGTcount: A:0.11, C:0.02, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:121076644 original size:16 final size:16
Alignment explanation
Indices: 121076606--121076661 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
121076596 CAACCCAATC
121076606 TTTATTTTTATTTTT-T
1 TTTA-TTTTATTTTTAT
121076622 TATT-TTTT-TTTTTAT
1 T-TTATTTTATTTTTAT
*
121076637 TTTCTTTTATTTTTAT
1 TTTATTTTATTTTTAT
121076653 TTTATTTTA
1 TTTATTTTA
121076662 GTTAAATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
14 7 0.20
15 10 0.29
16 16 0.46
17 2 0.06
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTATTTTATTTTTAT
Found at i:121076850 original size:43 final size:41
Alignment explanation
Indices: 121076766--121076857 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 41
121076756 TATCCATGCT
* * * *
121076766 GCCAAACAGTTCTATTCCAGCCAGAATGCCATATCTCTGCA
1 GCCAAACAGTCCTATTCCAGCCAGAATCCCAAAACTCTGCA
121076807 GCCAAACAGTCCTATTCCAGCCTTAGAATCCCCAAAAC-CTGCA
1 GCCAAACAGTCCTATTCCAGCC--AGAAT-CCCAAAACTCTGCA
121076850 GCCAAACA
1 GCCAAACA
121076858 CCCCTTTTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
41 21 0.48
43 18 0.41
44 5 0.11
ACGTcount: A:0.33, C:0.35, G:0.13, T:0.20
Consensus pattern (41 bp):
GCCAAACAGTCCTATTCCAGCCAGAATCCCAAAACTCTGCA
Found at i:121077819 original size:117 final size:118
Alignment explanation
Indices: 121077612--121077841 Score: 381
Period size: 117 Copynumber: 2.0 Consensus size: 118
121077602 TGTTTTCCAT
* *
121077612 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
121077677 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
**
121077730 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACC-GGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
****
121077794 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA
121077842 ACCGGAAATA
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
117 68 0.65
118 36 0.35
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:121077986 original size:14 final size:14
Alignment explanation
Indices: 121077967--121078009 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
121077957 AATAAAATTT
*
121077967 AAAAAAATCAAAAA
1 AAAAAAAGCAAAAA
*
121077981 AAAAAAAGGAAAAA
1 AAAAAAAGCAAAAA
*
121077995 AAAAGAAG-AAAAA
1 AAAAAAAGCAAAAA
121078008 AA
1 AA
121078010 TAAGTACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 7 0.27
14 19 0.73
ACGTcount: A:0.86, C:0.02, G:0.09, T:0.02
Consensus pattern (14 bp):
AAAAAAAGCAAAAA
Found at i:121081257 original size:41 final size:40
Alignment explanation
Indices: 121081190--121081340 Score: 144
Period size: 42 Copynumber: 3.6 Consensus size: 40
121081180 GAGTTTCTGT
*
121081190 TTAACCCTAATGGGTTTTCGTTTAGCTCTTTGAGCTTTAG-
1 TTAACCCTTATGGG-TTTCGTTTAGCTCTTTGAGCTTTAGA
* * *
121081230 TATAACTCTTCTGGGTTTCAGTTTAGCTCTTCCGAGCTTTAGA
1 T-TAACCCTTATGGGTTTC-GTTTAGCTCTT-TGAGCTTTAGA
* **
121081273 TTAACCCTTATGGGTTTCCGTTTAGCTCCTATGAGCTTCCG-
1 TTAACCCTTATGGGTTT-CGTTTAGCT-CTTTGAGCTTTAGA
*
121081314 TTCAACCCTTATGAGTTTTCGTTTAGC
1 TT-AACCCTTATG-GGTTTCGTTTAGC
121081341 ACTTCTGTGC
Statistics
Matches: 92, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 5 0.05
41 23 0.25
42 56 0.61
43 8 0.09
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.42
Consensus pattern (40 bp):
TTAACCCTTATGGGTTTCGTTTAGCTCTTTGAGCTTTAGA
Found at i:121081261 original size:21 final size:21
Alignment explanation
Indices: 121081200--121081261 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
121081190 TTAACCCTAA
121081200 TGGGTTTTC-GTTTAGCTCTT-
1 TGGG-TTTCAGTTTAGCTCTTC
* * *
121081220 TGAGCTTT-AGTATAACTCTTC
1 TG-GGTTTCAGTTTAGCTCTTC
121081241 TGGGTTTCAGTTTAGCTCTTC
1 TGGGTTTCAGTTTAGCTCTTC
121081262 CGAGCTTTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48
Consensus pattern (21 bp):
TGGGTTTCAGTTTAGCTCTTC
Found at i:121081336 original size:21 final size:21
Alignment explanation
Indices: 121081275--121081336 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
121081265 GCTTTAGATT
* *
121081275 AACCCTTATGGGTTTCCGTTT
1 AACCCTTATGAGTTTCCGTTC
* *
121081296 AGCTCC-TATGAGCTTCCGTTC
1 AAC-CCTTATGAGTTTCCGTTC
*
121081317 AACCCTTATGAGTTTTCGTT
1 AACCCTTATGAGTTTCCGTT
121081337 TAGCACTTCT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
AACCCTTATGAGTTTCCGTTC
Found at i:121081803 original size:2 final size:2
Alignment explanation
Indices: 121081796--121081834 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
121081786 GAATGACAAT
121081796 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121081835 GTGTGTATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121083571 original size:19 final size:19
Alignment explanation
Indices: 121083510--121083572 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
121083500 ATGGGCATGG
*
121083510 AATAATA-ATACATGAATA
1 AATAATATAAACATGAATA
*
121083528 AA-AATATTACAA-GTGAATGA
1 AATAATA-TA-AACATGAAT-A
121083548 CAATAATATAAACATGAATA
1 -AATAATATAAACATGAATA
121083568 AATAA
1 AATAA
121083573 ATTAAAGAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 13
0.69 0.06 0.25
Matches are distributed among these distances:
17 4 0.11
18 2 0.06
19 11 0.31
20 5 0.14
21 9 0.26
22 4 0.11
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.25
Consensus pattern (19 bp):
AATAATATAAACATGAATA
Found at i:121083700 original size:22 final size:22
Alignment explanation
Indices: 121083646--121083688 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
121083636 ATCAAAAGAA
*
121083646 TGAAAT-AAT-ATAAAACAATT
1 TGAAATAAATAATGAAACAATT
121083666 TGAAATAAATAATGAAACAATT
1 TGAAATAAATAATGAAACAATT
121083688 T
1 T
121083689 TGACTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 11 0.55
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (22 bp):
TGAAATAAATAATGAAACAATT
Found at i:121083944 original size:19 final size:18
Alignment explanation
Indices: 121083880--121083954 Score: 75
Period size: 19 Copynumber: 4.3 Consensus size: 18
121083870 ATAGAAAAAA
*
121083880 ATAT-TAAAGTAAATAAT
1 ATATATAAAATAAATAAT
*
121083897 ATACATAAAATAAA-AAT
1 ATATATAAAATAAATAAT
* *
121083914 AT-TTTAATATAAATAAT
1 ATATATAAAATAAATAAT
121083931 ATATATGAAAATAAATAAT
1 ATATAT-AAAATAAATAAT
*
121083950 GTATA
1 ATATA
121083955 AAGAGTTTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
16 8 0.17
17 13 0.28
18 10 0.22
19 15 0.33
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (18 bp):
ATATATAAAATAAATAAT
Found at i:121089550 original size:17 final size:17
Alignment explanation
Indices: 121089524--121089557 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
121089514 ACGGAAATGA
* *
121089524 TTTGTTAGATTCTAAAT
1 TTTGTAAGATTCCAAAT
121089541 TTTGTAAGATTCCAAAT
1 TTTGTAAGATTCCAAAT
121089558 CCATGATTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (17 bp):
TTTGTAAGATTCCAAAT
Found at i:121093574 original size:12 final size:12
Alignment explanation
Indices: 121093558--121093595 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
121093548 AAAATTCTAA
121093558 AAAAAAAAACC-
1 AAAAAAAAACCT
121093569 AGAAAAAGAAACCT
1 A-AAAAA-AAACCT
121093583 AAAAAAAAACCT
1 AAAAAAAAACCT
121093595 A
1 A
121093596 GCCGCCGCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.04
12 12 0.50
13 10 0.42
14 1 0.04
ACGTcount: A:0.74, C:0.16, G:0.05, T:0.05
Consensus pattern (12 bp):
AAAAAAAAACCT
Found at i:121095035 original size:19 final size:19
Alignment explanation
Indices: 121095000--121095037 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
121094990 CCATTGTTAC
*
121095000 TGTTATTATTATTATCACT
1 TGTTATTATTATCATCACT
121095019 TGTTATTA-TACTCATCACT
1 TGTTATTATTA-TCATCACT
121095038 ATTATTGTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.53
Consensus pattern (19 bp):
TGTTATTATTATCATCACT
Found at i:121095055 original size:13 final size:13
Alignment explanation
Indices: 121095037--121095069 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
121095027 TACTCATCAC
121095037 TATTATTG-TACTT
1 TATTATTGTTAC-T
121095050 TATTATTGTTACT
1 TATTATTGTTACT
121095063 TATTATT
1 TATTATT
121095070 TTAGTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (13 bp):
TATTATTGTTACT
Found at i:121095149 original size:3 final size:3
Alignment explanation
Indices: 121095143--121095337 Score: 87
Period size: 3 Copynumber: 66.3 Consensus size: 3
121095133 TTTTTTTTTG
* * * *
121095143 TTA TTA TTA TTC TTA TTA TTA TTA TTA TTA TCA CTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * * * *
121095191 GAA CTA TTT TTA TTA CTA TTA TT- TAA TATA TTA TTT TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
** * * * * * *
121095236 TCG TTA CTA TTA TTG TTA -TA TTG TTA CTA TTA CTA TCA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
121095282 -TG TTA TTA -TA TCTT TTA CTA TTA TTA TTA TT- GTA TTC TTA CTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
121095325 TTA TTG TTA TTA T
1 TTA TTA TTA TTA T
121095338 ATTTCCTTTT
Statistics
Matches: 131, Mismatches: 53, Indels: 16
0.65 0.26 0.08
Matches are distributed among these distances:
2 8 0.06
3 119 0.91
4 4 0.03
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:121095263 original size:20 final size:20
Alignment explanation
Indices: 121095222--121095334 Score: 79
Period size: 20 Copynumber: 5.6 Consensus size: 20
121095212 TTTAATATAT
* *
121095222 TATTTTTATTACTATCGTTAC
1 TATTATTATTA-TATTGTTAC
*
121095243 TATTATTGTTATATTGTTAC
1 TATTATTATTATATTGTTAC
* * *
121095263 TATTACTATCATATTATTA-
1 TATTATTATTATATTGTTAC
* *
121095282 TGTTATTA-TATCTT-TTAC
1 TATTATTATTATATTGTTAC
*
121095300 TATTATTATTATTGTATTCTTAC
1 TATTATTATTA---TATTGTTAC
*
121095323 TATTATTGTTAT
1 TATTATTATTAT
121095335 TATATTTCCT
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
17 3 0.04
18 11 0.15
19 8 0.11
20 24 0.33
21 9 0.12
22 3 0.04
23 14 0.19
ACGTcount: A:0.27, C:0.09, G:0.05, T:0.59
Consensus pattern (20 bp):
TATTATTATTATATTGTTAC
Found at i:121095304 original size:23 final size:23
Alignment explanation
Indices: 121095277--121095340 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
121095267 ACTATCATAT
*
121095277 TATTA-TGTTATTATATCTTTTAC
1 TATTATTGTTATTATAT-TCTTAC
* *
121095300 TATTATTATTATTGTATTCTTAC
1 TATTATTGTTATTATATTCTTAC
121095323 TATTATTGTTATTATATT
1 TATTATTGTTATTATATT
121095341 TCCTTTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 26 0.74
24 9 0.26
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.62
Consensus pattern (23 bp):
TATTATTGTTATTATATTCTTAC
Found at i:121095681 original size:3 final size:3
Alignment explanation
Indices: 121095489--121095661 Score: 67
Period size: 3 Copynumber: 57.7 Consensus size: 3
121095479 TTTAATTTAC
* **
121095489 TTA TTA TT- TGTA TTA TTG TTA TTA -TA TT- TGTA TTTA CCA TTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA
* * * *
121095534 TTA CTA TTA TT- TTCA CTT- TTA TTA CTA TTA CTA TTA TCA TT- TCT-
1 TTA TTA TTA TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
121095578 TTA TTA TTT TCTA TTA CTA TTA TTA TTA TTA ATA TAA ATA TTGA -TA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
* * *
121095624 TTC TTA TTA CTA CTT- TTA TTA TTA TTA TTA ATA TTA TT
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT
121095662 GTTTTACCAC
Statistics
Matches: 123, Mismatches: 30, Indels: 34
0.66 0.16 0.18
Matches are distributed among these distances:
2 13 0.11
3 100 0.81
4 7 0.06
5 3 0.02
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:121098096 original size:43 final size:42
Alignment explanation
Indices: 121098035--121098119 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 42
121098025 GACGGAGGGA
121098035 AACGAAGCGACATAGGTAAAAAACAAACTTTATTTTATTTATT
1 AACGAAGCGACATAGGTAAAAAACAAACTTTATTTT-TTTATT
*
121098078 AACGAAGCGACATAGGTAAAAAATAAACTTTATTTTTTTATT
1 AACGAAGCGACATAGGTAAAAAACAAACTTTATTTTTTTATT
121098120 TATTATACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 6 0.15
43 35 0.85
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.34
Consensus pattern (42 bp):
AACGAAGCGACATAGGTAAAAAACAAACTTTATTTTTTTATT
Found at i:121102753 original size:21 final size:21
Alignment explanation
Indices: 121102727--121102769 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
121102717 GTGGCTTAAC
121102727 TCTCTTATTCGTATTCCCCAG
1 TCTCTTATTCGTATTCCCCAG
121102748 TCTCTTATTCGTATTCCCCAG
1 TCTCTTATTCGTATTCCCCAG
121102769 T
1 T
121102770 GGAGTCGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.33, G:0.09, T:0.44
Consensus pattern (21 bp):
TCTCTTATTCGTATTCCCCAG
Found at i:121104161 original size:3 final size:3
Alignment explanation
Indices: 121104155--121104197 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
121104145 GAATAATAGC
* * *
121104155 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAC AAT ATT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
121104198 CATTAAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:121104163 original size:12 final size:12
Alignment explanation
Indices: 121104146--121104176 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
121104136 GACAATAAAG
121104146 AATAATAGCAAT
1 AATAATAGCAAT
*
121104158 AATAATAGTAAT
1 AATAATAGCAAT
121104170 AATAATA
1 AATAATA
121104177 ATAATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.29
Consensus pattern (12 bp):
AATAATAGCAAT
Found at i:121104176 original size:18 final size:18
Alignment explanation
Indices: 121104146--121104349 Score: 65
Period size: 18 Copynumber: 10.7 Consensus size: 18
121104136 GACAATAAAG
*
121104146 AATAATAGCAATAATAAT
1 AATAATAGTAATAATAAT
* *
121104164 AGTAATAATAATAATAAT
1 AATAATAGTAATAATAAT
* *
121104182 AACAATATTAATAATACATT
1 AATAATAGTAATAATA-A-T
121104202 AAAATACAATAGTAA-AATAAT
1 --AAT--AATAGTAATAATAAT
* * * *
121104223 GACAATGGTAGTAATAAT
1 AATAATAGTAATAATAAT
* *
121104241 -ATATTGGTAATACATAAT
1 AATAATAGTAATA-ATAAT
* *
121104259 AGAGGGAATAAAGAATATAATAGA-
1 A-A--TAAT--AGTA-ATAATA-AT
121104283 AATAATAGTAATAAT-AT
1 AATAATAGTAATAATAAT
* ** *
121104300 GAACAATAGTGGTGATAAT
1 -AATAATAGTAATAATAAT
*
121104319 AATAATAATAATAATAAT
1 AATAATAGTAATAATAAT
* *
121104337 AACAATAATAATA
1 AATAATAGTAATA
121104350 TATGAGTTAT
Statistics
Matches: 136, Mismatches: 31, Indels: 38
0.66 0.15 0.19
Matches are distributed among these distances:
16 1 0.01
17 15 0.11
18 80 0.59
19 7 0.05
20 2 0.01
21 4 0.03
22 5 0.04
23 5 0.04
24 13 0.10
25 4 0.03
ACGTcount: A:0.57, C:0.04, G:0.10, T:0.29
Consensus pattern (18 bp):
AATAATAGTAATAATAAT
Found at i:121104210 original size:24 final size:24
Alignment explanation
Indices: 121104146--121104222 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
121104136 GACAATAAAG
** *
121104146 AATAATAGCAATAATAATAGTAAT
1 AATAATAATAATAACAATAGTAAT
*
121104170 AATAATAATAATAACAATATTAAT
1 AATAATAATAATAACAATAGTAAT
121104194 AATACATTAA-AAT-ACAATAGTAA-
1 AATA-A-TAATAATAACAATAGTAAT
121104217 AATAAT
1 AATAAT
121104223 GACAATGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.02
22 1 0.02
23 4 0.09
24 33 0.72
25 4 0.09
26 3 0.07
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (24 bp):
AATAATAATAATAACAATAGTAAT
Found at i:121104322 original size:3 final size:3
Alignment explanation
Indices: 121104314--121104349 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
121104304 AATAGTGGTG
*
121104314 ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
121104350 TATGAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:121105838 original size:77 final size:77
Alignment explanation
Indices: 121105709--121105859 Score: 250
Period size: 77 Copynumber: 2.0 Consensus size: 77
121105699 ATATGGAGCT
121105709 TGTCGAAACCATTTTTATTTTTGGATTTAAAAAACGAAGGGGATCGAATTTTAAAACAAAGTGTG
1 TGTCGAAACCATTTTTATTTTTGGATTTAAAAAACGAAGGGGATCGAATTTTAAAACAAAGTGTG
121105774 GAATCGCCAACC
66 GAATCGCCAACC
* * *
121105786 TGTCGAACCCATTTTTATTTTTGGATTTAAAAAATGACGGGGATC-AACTTTTAAAACAAAGTGT
1 TGTCGAAACCATTTTTATTTTTGGATTTAAAAAACGAAGGGGATCGAA-TTTTAAAACAAAGTGT
*
121105850 GGAGTCGCCA
65 GGAATCGCCA
121105860 CCAATCTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
76 2 0.03
77 67 0.97
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (77 bp):
TGTCGAAACCATTTTTATTTTTGGATTTAAAAAACGAAGGGGATCGAATTTTAAAACAAAGTGTG
GAATCGCCAACC
Found at i:121107265 original size:23 final size:21
Alignment explanation
Indices: 121107227--121107308 Score: 119
Period size: 21 Copynumber: 3.8 Consensus size: 21
121107217 AACACATAAA
* *
121107227 GTGCCTAAAACGACACACGAG
1 GTGCCTGATACGACACACGAG
121107248 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
121107269 GTGCCTGATACGACACATGAG
1 GTGCCTGATACGACACACGAG
121107290 GTGCCTGAAATACGACACA
1 GTGCCTG--ATACGACACA
121107309 TAAAGTGCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
21 46 0.82
23 10 0.18
ACGTcount: A:0.33, C:0.27, G:0.26, T:0.15
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:121107309 original size:23 final size:22
Alignment explanation
Indices: 121107213--121107320 Score: 114
Period size: 21 Copynumber: 5.0 Consensus size: 22
121107203 CCTGATCAGT
* * *
121107213 ATACAACACATAAAGTGCCT-A
1 ATACGACACATGAGGTGCCTGA
* *
121107234 AAACGACACACGAGGTGCCTG-
1 ATACGACACATGAGGTGCCTGA
*
121107255 ATACGACACACGAGGTGCCTG-
1 ATACGACACATGAGGTGCCTGA
121107276 ATACGACACATGAGGTGCCTGAA
1 ATACGACACATGAGGTGCCTG-A
* *
121107299 ATACGACACATAAAGTGCCTGA
1 ATACGACACATGAGGTGCCTGA
121107321 TCAGTAAAGC
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
21 55 0.73
22 1 0.01
23 19 0.25
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (22 bp):
ATACGACACATGAGGTGCCTGA
Found at i:121108791 original size:16 final size:17
Alignment explanation
Indices: 121108756--121108791 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
121108746 CCTAATTCTC
121108756 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
121108772 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
121108787 CCTTC
1 CCTTC
121108792 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:121112142 original size:3 final size:3
Alignment explanation
Indices: 121112136--121112205 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
121112126 AAACAACAAC
* * *
121112136 AAT AAT AAT AAT AAC AAT AAT AAT AAT ACGAT AAA AAT -GT AA- AGATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT A-A-T
*
121112183 AAT AAA AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
121112206 AATCTAAAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
2 2 0.04
3 46 0.87
4 1 0.02
5 4 0.08
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:121112153 original size:15 final size:15
Alignment explanation
Indices: 121112133--121112163 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
121112123 AACAAACAAC
121112133 AACAATAATAATAAT
1 AACAATAATAATAAT
121112148 AACAATAATAATAAT
1 AACAATAATAATAAT
121112163 A
1 A
121112164 CGATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
AACAATAATAATAAT
Found at i:121112208 original size:35 final size:37
Alignment explanation
Indices: 121112144--121112214 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
121112134 ACAATAATAA
* *
121112144 TAATAACAATAATAATAATACGATAAAAATGTAAAGAT
1 TAATAAAAATAATAATAATAC-ATAAAAATCTAAAGAT
121112182 TAATAAAAATAATAATAATA-AT-AAAATCTAAAG
1 TAATAAAAATAATAATAATACATAAAAATCTAAAG
121112215 TTTTGAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
35 10 0.32
36 2 0.06
38 19 0.61
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (37 bp):
TAATAAAAATAATAATAATACATAAAAATCTAAAGAT
Found at i:121112364 original size:18 final size:20
Alignment explanation
Indices: 121112338--121112378 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
121112328 TAAAAATGAT
*
121112338 AAAAGCAAC-AATA-ATAAA
1 AAAAACAACGAATACATAAA
*
121112356 AAAAACAACGTATACATAAA
1 AAAAACAACGAATACATAAA
121112376 AAA
1 AAA
121112379 TAGTAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.71, C:0.12, G:0.05, T:0.12
Consensus pattern (20 bp):
AAAAACAACGAATACATAAA
Found at i:121112549 original size:16 final size:17
Alignment explanation
Indices: 121112524--121112556 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
121112514 AATACCAAAG
*
121112524 AATAACAAAAA-TAAAA
1 AATAAAAAAAACTAAAA
121112540 AATAAAAAAAACTAAAA
1 AATAAAAAAAACTAAAA
121112557 TTAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (17 bp):
AATAAAAAAAACTAAAA
Found at i:121112561 original size:16 final size:18
Alignment explanation
Indices: 121112537--121112573 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
121112527 AACAAAAATA
121112537 AAAAATAAA-AAAA-ACT
1 AAAAATAAATAAAAGACT
*
121112553 AAAATTAAATAAAAGACT
1 AAAAATAAATAAAAGACT
121112571 AAA
1 AAA
121112574 TTTGAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (18 bp):
AAAAATAAATAAAAGACT
Found at i:121116558 original size:16 final size:17
Alignment explanation
Indices: 121116528--121116561 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
121116518 ATGATTTGTC
*
121116528 AGATTCTAAATTTTATA
1 AGATTCCAAATTTTATA
121116545 AGATTCCAAA-TTTATA
1 AGATTCCAAATTTTATA
121116561 A
1 A
121116562 TTCTAAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (17 bp):
AGATTCCAAATTTTATA
Found at i:121116622 original size:56 final size:56
Alignment explanation
Indices: 121116552--121116661 Score: 166
Period size: 56 Copynumber: 2.0 Consensus size: 56
121116542 ATAAGATTCC
* *
121116552 AAATTTATAATTCTAAGTATTCAATGAATTCACAATCTAAATATATTATGTGAAAA
1 AAATCTATAATTCTAAGTATTCAACGAATTCACAATCTAAATATATTATGTGAAAA
** * *
121116608 AAATCTATAATTCTAAGTATTTTACGATTTCACAATCTAAATATGTTATGTGAA
1 AAATCTATAATTCTAAGTATTCAACGAATTCACAATCTAAATATATTATGTGAA
121116662 CATGAACTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (56 bp):
AAATCTATAATTCTAAGTATTCAACGAATTCACAATCTAAATATATTATGTGAAAA
Found at i:121118456 original size:35 final size:35
Alignment explanation
Indices: 121118410--121118479 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
121118400 ATTTAGGAGT
121118410 AAGAAAATTCTTACTTCGTCAATGTTCCCTACACC
1 AAGAAAATTCTTACTTCGTCAATGTTCCCTACACC
121118445 AAGAAAATTCTTACTTCGTCAATGTTCCCTACACC
1 AAGAAAATTCTTACTTCGTCAATGTTCCCTACACC
121118480 TTTGATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (35 bp):
AAGAAAATTCTTACTTCGTCAATGTTCCCTACACC
Found at i:121119836 original size:22 final size:22
Alignment explanation
Indices: 121119793--121119837 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
121119783 GCTGAGGGAG
* * *
121119793 AAAAAGAGTGGATGAAAGAAAA
1 AAAAACAGTGAATAAAAGAAAA
*
121119815 AAAAACAGTGAATAAAATAAAA
1 AAAAACAGTGAATAAAAGAAAA
121119837 A
1 A
121119838 TAACTAAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.69, C:0.02, G:0.18, T:0.11
Consensus pattern (22 bp):
AAAAACAGTGAATAAAAGAAAA
Found at i:121120921 original size:2 final size:2
Alignment explanation
Indices: 121120914--121120957 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
121120904 ATATGTACAA
* *
121120914 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121120956 AT
1 AT
121120958 GTACATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:121121105 original size:34 final size:33
Alignment explanation
Indices: 121121044--121121108 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
121121034 ACACAATATG
* ***
121121044 GTATTTAAAATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATAAAAATATATAATA
121121077 GTATTTAAGAATATATACATAAAAATATATAA
1 GTATTTAA-AATATATACATAAAAATATATAA
121121109 CTAATGGCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 8 0.30
34 19 0.70
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (33 bp):
GTATTTAAAATATATACATAAAAATATATAATA
Found at i:121121655 original size:25 final size:25
Alignment explanation
Indices: 121121626--121121690 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
121121616 AGGTGGCTAG
*
121121626 GGTTTCTTGGTTTTTTGGGGGGTTA
1 GGTTTCTTGCTTTTTTGGGGGGTTA
* * **
121121651 GGTTTTTTTCTTTTTTTTGGGGTTA
1 GGTTTCTTGCTTTTTTGGGGGGTTA
*
121121676 GGTTT-TTTCTTTTTT
1 GGTTTCTTGCTTTTTT
121121691 TTTTTGGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 10 0.29
25 25 0.71
ACGTcount: A:0.03, C:0.05, G:0.28, T:0.65
Consensus pattern (25 bp):
GGTTTCTTGCTTTTTTGGGGGGTTA
Found at i:121121691 original size:25 final size:24
Alignment explanation
Indices: 121121644--121121712 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 24
121121634 GGTTTTTTGG
121121644 GGGGTTAGGTTTTTTTCTTTTTTTT
1 GGGGTTAGGTTTTTTT-TTTTTTTT
121121669 GGGGTTAGGTTTTTTCTTTTTTTTT
1 GGGGTTAGGTTTTTT-TTTTTTTTT
**
121121694 TTGGTTAGGTTTTTTTTTT
1 GGGGTTAGGTTTTTTTTTT
121121713 GGGGGGAGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.10
25 36 0.88
26 1 0.02
ACGTcount: A:0.04, C:0.03, G:0.23, T:0.70
Consensus pattern (24 bp):
GGGGTTAGGTTTTTTTTTTTTTTT
Found at i:121122715 original size:88 final size:87
Alignment explanation
Indices: 121122623--121122784 Score: 191
Period size: 88 Copynumber: 1.8 Consensus size: 87
121122613 TTTTTTGAAA
* * * *
121122623 AAAAAAAGAAATTGAAAATAGCTCAGTACG-TGAGCCAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAAAAGAAATTGAAAATACCTC-G-ACGTTGACCCAAGGCTCAACTCACATATCGCAATATGA
*
121122687 GTTGCTTTTTGAAAACAGAATTTG
64 GTTGATTTTTGAAAACAGAATTTG
* ** * * *
121122711 AAAAACAGATTTTGAAAATTCCTCGACGTTTGACCCGAGGCTCAACTCACATATCGCAATGTGAG
1 AAAAAAAGAAATTGAAAATACCTCGACG-TTGACCCAAGGCTCAACTCACATATCGCAATATGAG
121122776 TTGATTTTT
65 TTGATTTTT
121122785 TTGAAAAATA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
86 3 0.05
87 1 0.02
88 57 0.93
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (87 bp):
AAAAAAAGAAATTGAAAATACCTCGACGTTGACCCAAGGCTCAACTCACATATCGCAATATGAGT
TGATTTTTGAAAACAGAATTTG
Found at i:121122717 original size:14 final size:14
Alignment explanation
Indices: 121122694--121122728 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
121122684 TGAGTTGCTT
121122694 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
121122707 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
121122721 TTTGAAAA
1 TTTGAAAA
121122729 TTCCTCGACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:121122833 original size:248 final size:241
Alignment explanation
Indices: 121122375--121123206 Score: 853
Period size: 248 Copynumber: 3.4 Consensus size: 241
121122365 AACAGACATT
121122375 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** * * * ** ** *
121122440 TTGATTTTTTG-AAACTTAACTTGAAAAGCATATTTTGAAAATACCTCGATATGTGACTGGAGGT
66 TTGTTTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACGTGTGACCCGAGGC
*
121122504 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGACTCAACTCT
131 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA-A-AAATTGAAAA-AAT--ACT-T
** * *
121122566 C-GCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
190 CAGGTG-TATCT--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
* ** *
121122620 AAAAAAAAAAGAAATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACTTCTCGCAATAT
1 ---AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* * * *
121122685 GAGTTG-CTTTTTGAAAACAGAATTTGAAAAACAGATTTTGAAAATTCCTCGACGTTTGACCCGA
63 GAGTTGTTTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACGTGTGACCCGA
* * *
121122749 GGCTCAACTCACATATCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACTTC
128 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA-A-AAATTGAAAAAATACTTC
121122814 AGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
191 AG-GTGT-ATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
121122867 AAAGATAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * *
121122932 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
66 TTG---TTTTTTTGAAA-ACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACGTGTGACCCG
* * * * * *
121122997 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACAAAAATTG--AAATTACCTC
127 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAAAAAATTGAAAAAATACTTC
* *
121123060 AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
191 AG-GTGTATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * * ** ** *
121123111 AAAAACAGAAATTGAAAATACCTCA--GCATG-TCTTGAGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
121123173 GTTGATTTTTTTTTTGAAAAACAGAAATTGAAAA
65 GTTG----TTTTTTTG-AAAACAGAAATTGAAAA
121123207 TTCCTCAGCA
Statistics
Matches: 501, Mismatches: 66, Indels: 39
0.83 0.11 0.06
Matches are distributed among these distances:
241 1 0.00
242 32 0.06
243 23 0.05
244 130 0.26
246 14 0.03
247 17 0.03
248 180 0.36
249 77 0.15
250 23 0.05
251 4 0.01
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (241 bp):
AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGTTTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACGTGTGACCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAAAAATTGAAAAAATACTTCAGGTG
TATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:121122839 original size:79 final size:77
Alignment explanation
Indices: 121122748--121122942 Score: 259
Period size: 77 Copynumber: 2.5 Consensus size: 77
121122738 GTTTGACCCG
* * * *
121122748 AGGCTCAACTCACATATCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATA-CT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTG--AAAATAGC-
* * * *
121122812 TCAGTGTGTGATCTGA
63 TCAGCGCGTGAGC-CA
*
121122828 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAATAGCTCA
121122892 GCGCGTGAGCCA
66 GCGCGTGAGCCA
121122904 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
121122943 TTGAAAGGCA
Statistics
Matches: 104, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
76 2 0.02
77 53 0.51
78 1 0.01
79 47 0.45
80 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (77 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAATAGCTCA
GCGCGTGAGCCA
Found at i:121122943 original size:79 final size:78
Alignment explanation
Indices: 121122748--121122963 Score: 267
Period size: 79 Copynumber: 2.7 Consensus size: 78
121122738 GTTTGACCCG
* * * * *
121122748 AGGCTCAACTCACATATCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG--AAAATACTT
* * * *
121122813 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
121122828 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC-TC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATA-CTTC
121122891 AGCGCGTGAGC-CA
65 AGCGCGTGAGCTCA
**
121122904 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGATAGAAATTGAAAA
121122964 ACGGAAATTG
Statistics
Matches: 121, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
76 2 0.02
77 46 0.38
78 1 0.01
79 71 0.59
80 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATACTTCA
GCGCGTGAGCTCA
Found at i:121123102 original size:167 final size:167
Alignment explanation
Indices: 121122817--121123128 Score: 443
Period size: 170 Copynumber: 1.9 Consensus size: 167
121122807 ATACTTCAGT
* * * *
121122817 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGA
1 GTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAAACATAGAAATTGA
*
121122882 AAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGA
66 AAATACCTCA-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGA
**
121122947 AAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
128 AAAACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
* *
121122987 GTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACAACA-A-AAATTG
1 GTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGA-AACATAGAAATTG
* * *
121123050 AAATTACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
65 AAAATACCTCACGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
121123113 AAACAGAAATTGAAAA
129 AAACAGAAATTGAAAA
121123129 TACCTCAGCA
Statistics
Matches: 128, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
165 24 0.19
166 2 0.02
167 37 0.29
169 15 0.12
170 47 0.37
171 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (167 bp):
GTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAAACATAGAAATTGA
AAATACCTCACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
ACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
Found at i:121123152 original size:75 final size:75
Alignment explanation
Indices: 121122957--121123307 Score: 449
Period size: 78 Copynumber: 4.7 Consensus size: 75
121122947 AAGGCAGAAA
* * * * *
121122957 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCACCTCTCACAATAT
121123022 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * * *
121123034 TTG-ACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
121123098 GTTGATTTTT
66 GTTGATTTTT
* **
121123108 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
121123173 GTTGATTTTTTTT
66 GTTGA---TTTTT
* * * **
121123186 TTGAAAAACAGAAATTGAAAATTCCTCAGCATGTCTTGAGGCTCAACTAATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
*
121123251 GTTGA--ATT
66 GTTGATTTTT
*
121123259 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
121123308 TTTTGAACAG
Statistics
Matches: 247, Mismatches: 23, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
72 42 0.17
73 5 0.02
74 41 0.17
75 58 0.23
76 25 0.10
77 3 0.01
78 73 0.30
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTT
Found at i:121123303 original size:150 final size:148
Alignment explanation
Indices: 121122957--121123310 Score: 453
Period size: 153 Copynumber: 2.4 Consensus size: 148
121122947 AAGGCAGAAA
* * * ***
121122957 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAC
* * *
121123022 GAGTTGATTTTTTTGACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GAGTTGATTTTTTTGAAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTAACCTC
* *
121123087 TCGCAATATGAGTTGATTTTT
129 TCACAATATGAGTTGA-TATT
* *
121123108 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* * *
121123173 GTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATT-CCTCAGCATGTCTTGAGGCTCAACTAAT
66 GTTGA---TTTTTTTG-AAAACAAAAATTG-AAATTACCTCAGCATGTCCTGAGGCTCAACTAAC
*
121123237 TTCTCACAATATGAGTTGA-ATT
126 CTCTCACAATATGAGTTGATATT
*
121123259 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
121123311 TGAACAGAAA
Statistics
Matches: 179, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
149 31 0.17
150 47 0.26
151 36 0.20
152 8 0.04
153 52 0.29
154 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTGAAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
ACAATATGAGTTGATATT
Done.