Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 401 of 410
Found at i:121123330 original size:49 final size:49
Alignment explanation
Indices: 121123264--121123359 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
121123254 GAATTTTGAA
*
121123264 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
121123313 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
121123360 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:121123393 original size:72 final size:72
Alignment explanation
Indices: 121123313--121123453 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
121123303 ACTCATTTTG
121123313 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
121123378 TTTTGGA
66 TTTTGGA
121123385 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
121123450 TTTT
66 TTTT
121123454 TTTTTTTTGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGGA
Found at i:121123406 original size:121 final size:121
Alignment explanation
Indices: 121123192--121123431 Score: 410
Period size: 121 Copynumber: 2.0 Consensus size: 121
121123182 TTTTTTGAAA
*
121123192 AACAGAAATTGAAAATTCCTCAGCATGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAA
1 AACAGAAATTGAAAATTCCTCAACATGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAA
*
121123257 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
121123313 AACAGAAATTG-AAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATT-CCTCAACATGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGA
*
121123377 ATTTTGGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
65 ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
121123432 CTCGCAATAT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
120 5 0.04
121 107 0.96
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATTCCTCAACATGTCTTGAGGCTCAACTAATTTCTCACAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:121123616 original size:13 final size:13
Alignment explanation
Indices: 121123589--121123622 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
121123579 GAGTTGATTC
*
121123589 TTGAACAACATAAA
1 TTGAA-AACAGAAA
121123603 TTGAAAACAGAAA
1 TTGAAAACAGAAA
121123616 TTGAAAA
1 TTGAAAA
121123623 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:121123670 original size:140 final size:140
Alignment explanation
Indices: 121123460--121123987 Score: 748
Period size: 140 Copynumber: 3.9 Consensus size: 140
121123450 TTTTTTTTTT
* *
121123460 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAAGCTCAACTCTCCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
121123524 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
121123589 TTGAACAACATAAA
127 TTGAACAACATAAA
121123603 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
121123668 CTGATTTTGAAAAAGTAGAAATTAAAAGGTCCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
121123733 ACAACGTAAA
131 ACAACATAAA
121123743 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
121123808 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGA---G----TTG-
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
121123865 --AA-ATTAA
131 ACAACATAAA
* * * * *
121123872 ---AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
121123934 TTGATTTTGAAAAA-CAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 CTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
121123988 CAATTTAAAA
Statistics
Matches: 363, Mismatches: 18, Indels: 24
0.90 0.04 0.06
Matches are distributed among these distances:
125 33 0.09
126 72 0.20
129 3 0.01
130 2 0.01
133 3 0.01
137 1 0.00
139 3 0.01
140 217 0.60
142 23 0.06
143 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAA
Found at i:121123744 original size:54 final size:54
Alignment explanation
Indices: 121123645--121123749 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 54
121123635 ACCTGAGGCT
*
121123645 CAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGTC
1 CAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGTC
* * *
121123699 CAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 CAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
121123750 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
54 31 0.70
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
CAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGTC
Found at i:121124050 original size:122 final size:124
Alignment explanation
Indices: 121123740--121124080 Score: 501
Period size: 126 Copynumber: 2.8 Consensus size: 124
121123730 TGAACAACGT
* * * *
121123740 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
121123805 GAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTG
66 GAGTTGATTTTGAAAAA-CAAAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTG
*
121123865 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
121123930 TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAG-T-
65 TGAGTTGATTTTGAAAAACAAAAATTAAAAGG-TTCAACTCACCTCTCGCAATATGAGTTG
* * * * * *
121123988 CAATTTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
121124053 GAGTTGATTTTG-AAAACAAAAATTAAAA
66 GAGTTGATTTTGAAAAACAAAAATTAAAA
121124081 ATACCTCAAT
Statistics
Matches: 199, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
121 16 0.08
122 63 0.32
123 7 0.04
124 1 0.01
125 42 0.21
126 70 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (124 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGAAAAACAAAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTG
Found at i:121124102 original size:71 final size:70
Alignment explanation
Indices: 121123959--121124133 Score: 210
Period size: 71 Copynumber: 2.5 Consensus size: 70
121123949 AAAAATTAAA
* * * * * *
121123959 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
121124023 CCCCG
66 CCCCG
* *
121124028 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAATGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
121124093 GTCTTG
65 GCCCCG
*
121124099 AGGCTCAACTCA-TCTCTCACAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
121124134 CCCTTGAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 26 0.29
70 6 0.07
71 59 0.65
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:121131859 original size:22 final size:23
Alignment explanation
Indices: 121131830--121131891 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 23
121131820 TTTTTGGGGG
121131830 GTTAGGTTTTTTTCTTTTTTTTTTT
1 GTTAGGTTTTTTTC--TTTTTTTTT
*
121131855 GGGTTA-GATTTTTTCTTTTTTTTT
1 --GTTAGGTTTTTTTCTTTTTTTTT
121131879 GTTAGGTTTTTTT
1 GTTAGGTTTTTTT
121131892 TTTGGGGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 4 0.12
23 7 0.22
24 9 0.28
26 8 0.25
27 4 0.12
ACGTcount: A:0.06, C:0.03, G:0.16, T:0.74
Consensus pattern (23 bp):
GTTAGGTTTTTTTCTTTTTTTTT
Found at i:121131866 original size:26 final size:27
Alignment explanation
Indices: 121131828--121131878 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
121131818 TTTTTTTGGG
*
121131828 GGGTTAGGTTTTTTTCTTTTTTTTTTT
1 GGGTTAGGATTTTTTCTTTTTTTTTTT
121131855 GGGTTA-GATTTTTTCTTTTTTTTT
1 GGGTTAGGATTTTTTCTTTTTTTTT
121131879 GTTAGGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.06, C:0.04, G:0.18, T:0.73
Consensus pattern (27 bp):
GGGTTAGGATTTTTTCTTTTTTTTTTT
Found at i:121131893 original size:27 final size:26
Alignment explanation
Indices: 121131829--121131894 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
121131819 TTTTTTGGGG
*
121131829 GGTTAGGTTTTTTTCTTTTTTTTTTTG
1 GGTTA-GTTTTTTTCTTTTTTTTTTTA
*
121131856 GGTTAGATTTTTTCTTTTTTTTTGTTA
1 GGTTAGTTTTTTTCTTTTTTTTT-TTA
*
121131883 GGTT-TTTTTTTT
1 GGTTAGTTTTTTT
121131895 GGGGAGGGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.06, C:0.03, G:0.17, T:0.74
Consensus pattern (26 bp):
GGTTAGTTTTTTTCTTTTTTTTTTTA
Found at i:121137689 original size:6 final size:6
Alignment explanation
Indices: 121137673--121137710 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
121137663 CTGTGAGTTA
* *
121137673 CTGTT- CTGTTG CTGTTG CTGTTG CAGTTG CTGCTG CTG
1 CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTG
121137711 CTGTTGCTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.03, C:0.21, G:0.32, T:0.45
Consensus pattern (6 bp):
CTGTTG
Found at i:121137691 original size:27 final size:27
Alignment explanation
Indices: 121137653--121137719 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
121137643 TGCTGCTGAA
*
121137653 GCTGTTGTTGCTG-TG-AGTTACTGTTCT
1 GCTGCTGTTGCTGTTGCAGTTACTG--CT
* *
121137680 GTTGCTGTTGCTGTTGCAGTTGCTGCT
1 GCTGCTGTTGCTGTTGCAGTTACTGCT
121137707 GCTGCTGTTGCTG
1 GCTGCTGTTGCTG
121137720 CTGATGCAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 25 0.74
28 2 0.06
29 7 0.21
ACGTcount: A:0.04, C:0.18, G:0.33, T:0.45
Consensus pattern (27 bp):
GCTGCTGTTGCTGTTGCAGTTACTGCT
Found at i:121137716 original size:15 final size:15
Alignment explanation
Indices: 121137688--121137727 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
121137678 CTGTTGCTGT
*
121137688 TGCTGTTGCAGTTGC
1 TGCTGCTGCAGTTGC
*
121137703 TGCTGCTGCTGTTGC
1 TGCTGCTGCAGTTGC
*
121137718 TGCTGATGCA
1 TGCTGCTGCA
121137728 ACTGAGCTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.07, C:0.23, G:0.33, T:0.38
Consensus pattern (15 bp):
TGCTGCTGCAGTTGC
Found at i:121138363 original size:30 final size:30
Alignment explanation
Indices: 121138327--121138384 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
121138317 ATCACATTAT
* *
121138327 TTAGATTCCAAATATACAAGTAATATGAAC
1 TTAGATTCCAAATAAACAAGTAAAATGAAC
*
121138357 TTAGATTCCAAATAAATAAGTAAAATGA
1 TTAGATTCCAAATAAACAAGTAAAATGA
121138385 CCCAAGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.29
Consensus pattern (30 bp):
TTAGATTCCAAATAAACAAGTAAAATGAAC
Found at i:121139411 original size:15 final size:14
Alignment explanation
Indices: 121139391--121139564 Score: 117
Period size: 15 Copynumber: 12.0 Consensus size: 14
121139381 CCTGCTGGGA
*
121139391 CTGCTGTGGTGGCTG
1 CTGCTGT-GTTGCTG
121139406 CTGCTGCTGTTGCTG
1 CTGCTG-TGTTGCTG
*
121139421 TTGCTGTTGTTGCTG
1 CTGCTG-TGTTGCTG
121139436 CTG-T-TGTTGCTG
1 CTGCTGTGTTGCTG
* * *
121139448 CTGTTGCTGCTGTTG
1 CTGCTG-TGTTGCTG
*
121139463 TTGCTGCTGTTGCTG
1 CTGCTG-TGTTGCTG
121139478 CTG-T-TGTTGCTG
1 CTGCTGTGTTGCTG
* *
121139490 TTGTTGCTGTTGCTG
1 CTGCTG-TGTTGCTG
121139505 CTGCTGCTGTTGCTGTTG
1 CTGCTG-TGTTGC---TG
*
121139523 CTGCTGCTGTTGTTG
1 CTGCTG-TGTTGCTG
121139538 CTGCTGTTGTTGCTG
1 CTGCTG-TGTTGCTG
121139553 CTG-T-TGTTGCTG
1 CTGCTGTGTTGCTG
121139565 TTGTTGGGCA
Statistics
Matches: 132, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
12 29 0.22
13 2 0.02
14 3 0.02
15 83 0.63
16 1 0.01
18 14 0.11
ACGTcount: A:0.00, C:0.19, G:0.34, T:0.47
Consensus pattern (14 bp):
CTGCTGTGTTGCTG
Found at i:121139419 original size:12 final size:12
Alignment explanation
Indices: 121139407--121139570 Score: 190
Period size: 12 Copynumber: 13.9 Consensus size: 12
121139397 TGGTGGCTGC
*
121139407 TGCTGCTGTTGC
1 TGCTGCTGTTGT
*
121139419 TGTTGCTGTTGT
1 TGCTGCTGTTGT
121139431 TGCTGCTGTTGT
1 TGCTGCTGTTGT
121139443 TGCTGC---TGT
1 TGCTGCTGTTGT
121139452 TGCTGCTGTTGT
1 TGCTGCTGTTGT
*
121139464 TGCTGCTGTTGC
1 TGCTGCTGTTGT
* *
121139476 TGCTGTTGTTGC
1 TGCTGCTGTTGT
* * *
121139488 TGTTGTTGCTGT
1 TGCTGCTGTTGT
* *
121139500 TGCTGCTGCTGC
1 TGCTGCTGTTGT
* *
121139512 TGTTGCTGTTGC
1 TGCTGCTGTTGT
121139524 TGCTGCTGTTGT
1 TGCTGCTGTTGT
121139536 TGCTGCTGTTGT
1 TGCTGCTGTTGT
121139548 TGCTGCTGTTGT
1 TGCTGCTGTTGT
*
121139560 TGCTGTTGTTG
1 TGCTGCTGTTG
121139571 GGCATGCCTC
Statistics
Matches: 133, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
9 9 0.07
12 124 0.93
ACGTcount: A:0.00, C:0.18, G:0.34, T:0.49
Consensus pattern (12 bp):
TGCTGCTGTTGT
Found at i:121139426 original size:21 final size:21
Alignment explanation
Indices: 121139405--121139570 Score: 197
Period size: 21 Copynumber: 7.9 Consensus size: 21
121139395 TGTGGTGGCT
* *
121139405 GCTGCTGCTGTTGCTGTTGCT
1 GCTGTTGCTGCTGCTGTTGCT
* *
121139426 GTTGTTGCTGCTGTTGTTGCT
1 GCTGTTGCTGCTGCTGTTGCT
*
121139447 GCTGTTGCTGCTGTTGTTGCT
1 GCTGTTGCTGCTGCTGTTGCT
*
121139468 GCTGTTGCTGCTGTTGTTGCT
1 GCTGTTGCTGCTGCTGTTGCT
* * *
121139489 GTTGTTGCTGTTGCTGCTGCT
1 GCTGTTGCTGCTGCTGTTGCT
* *
121139510 GCTGTTGCTGTTGCTGCTGCT
1 GCTGTTGCTGCTGCTGTTGCT
* *
121139531 GTTGTTGCTGCTGTTGTTGCT
1 GCTGTTGCTGCTGCTGTTGCT
* *
121139552 GCTGTTGTTGCTGTTGTTG
1 GCTGTTGCTGCTGCTGTTG
121139571 GGCATGCCTC
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 129 1.00
ACGTcount: A:0.00, C:0.18, G:0.34, T:0.48
Consensus pattern (21 bp):
GCTGTTGCTGCTGCTGTTGCT
Found at i:121139557 original size:9 final size:9
Alignment explanation
Indices: 121139404--121139567 Score: 142
Period size: 9 Copynumber: 18.2 Consensus size: 9
121139394 CTGTGGTGGC
*
121139404 TGCTGCTGC
1 TGCTGCTGT
*
121139413 TGTTGCTGT
1 TGCTGCTGT
*
121139422 TGCTGTTGT
1 TGCTGCTGT
121139431 TGCTGCTGTTGT
1 TGCTGC---TGT
121139443 TGCTGCTGT
1 TGCTGCTGT
121139452 TGCTGCTGTTGT
1 TGCTGC---TGT
121139464 TGCTGCTGT
1 TGCTGCTGT
121139473 TGCTGCTGT
1 TGCTGCTGT
*
121139482 TGTTGCTGT
1 TGCTGCTGT
*
121139491 TGTTGCTGT
1 TGCTGCTGT
121139500 TGCTGC---
1 TGCTGCTGT
121139506 TGCTGCTGT
1 TGCTGCTGT
* *
121139515 TGCTGTTGC
1 TGCTGCTGT
121139524 TGCTGCTGT
1 TGCTGCTGT
*
121139533 TG-T--TGC
1 TGCTGCTGT
*
121139539 TGCTGTTGT
1 TGCTGCTGT
121139548 TGCTGCTGT
1 TGCTGCTGT
*
121139557 TGTTGCTGT
1 TGCTGCTGT
121139566 TG
1 TG
121139568 TTGGGCATGC
Statistics
Matches: 128, Mismatches: 15, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
6 10 0.08
7 1 0.01
8 1 0.01
9 98 0.77
12 18 0.14
ACGTcount: A:0.00, C:0.18, G:0.34, T:0.48
Consensus pattern (9 bp):
TGCTGCTGT
Found at i:121139617 original size:6 final size:6
Alignment explanation
Indices: 121139608--121139666 Score: 73
Period size: 6 Copynumber: 9.8 Consensus size: 6
121139598 CATCTGCAGT
* * * * *
121139608 TGTTGC TGTTGC TGTTGC TGTTGA TGTTGA TGTTGA GGTTGC TGCTGC
1 TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC
121139656 TGTTGC TGTTG
1 TGTTGC TGTTG
121139667 TTGCTGCTCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.05, C:0.12, G:0.36, T:0.47
Consensus pattern (6 bp):
TGTTGC
Found at i:121139671 original size:18 final size:18
Alignment explanation
Indices: 121139617--121139674 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
121139607 TTGTTGCTGT
*
121139617 TGCTGTTGCTGTTGATGT
1 TGCTGTTGCTGTTGATGC
* ** *
121139635 TGATGTTGAGGTTGCTGC
1 TGCTGTTGCTGTTGATGC
*
121139653 TGCTGTTGCTGTTGTTGC
1 TGCTGTTGCTGTTGATGC
121139671 TGCT
1 TGCT
121139675 CCCGTGCTTT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.05, C:0.14, G:0.34, T:0.47
Consensus pattern (18 bp):
TGCTGTTGCTGTTGATGC
Found at i:121145299 original size:31 final size:30
Alignment explanation
Indices: 121145264--121145342 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
121145254 CAACATTAAT
121145264 GTTTCATGTATATATTTGAACCACAATCAAA
1 GTTTCATGTATATATTTGAACCA-AATCAAA
* * * *
121145295 GTTTCAAGTGTATAATTGCACCAAATCAAA
1 GTTTCATGTATATATTTGAACCAAATCAAA
121145325 G-TTCATGTATCAT-TTTGA
1 GTTTCATGTAT-ATATTTGA
121145343 GATTTGTCCC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 10 0.26
30 10 0.26
31 19 0.49
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (30 bp):
GTTTCATGTATATATTTGAACCAAATCAAA
Found at i:121150497 original size:24 final size:24
Alignment explanation
Indices: 121150468--121150528 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
121150458 AATTTAATTA
121150468 TTTAATATTTTTTATAAATATATG
1 TTTAATATTTTTTATAAATATATG
*
121150492 TTTAATAATTTTTATAAATATATG
1 TTTAATATTTTTTATAAATATATG
121150516 TTTAATATTTTTT
1 TTTAATATTTTTT
121150529 TCTTTTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (24 bp):
TTTAATATTTTTTATAAATATATG
Found at i:121155591 original size:19 final size:19
Alignment explanation
Indices: 121155559--121155596 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
121155549 TGAAACTCGA
*
121155559 AAAGTATAATGACTCAATT
1 AAAGTATAATGACTAAATT
121155578 AAAGTATAGA-GACTAAATT
1 AAAGTATA-ATGACTAAATT
121155597 CATAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (19 bp):
AAAGTATAATGACTAAATT
Found at i:121156375 original size:15 final size:15
Alignment explanation
Indices: 121156351--121156384 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
121156341 AATTTTAAAG
121156351 AAATGAATATTGTAA
1 AAATGAATATTGTAA
*
121156366 AAATGGATATTGTAA
1 AAATGAATATTGTAA
121156381 AAAT
1 AAAT
121156385 ATTGATTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (15 bp):
AAATGAATATTGTAA
Found at i:121157746 original size:5 final size:5
Alignment explanation
Indices: 121157736--121157761 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
121157726 ATTATGTTGC
121157736 TTAAA TTAAA TTAAA TTAAA TTAAA T
1 TTAAA TTAAA TTAAA TTAAA TTAAA T
121157762 AAGTGTAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TTAAA
Found at i:121158000 original size:13 final size:14
Alignment explanation
Indices: 121157977--121158005 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
121157967 AATTTATGTT
121157977 AAAAAGTAAAAAAA
1 AAAAAGTAAAAAAA
121157991 AAAAAG-AAAAAAA
1 AAAAAGTAAAAAAA
121158004 AA
1 AA
121158006 GAGCAATGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (14 bp):
AAAAAGTAAAAAAA
Found at i:121158236 original size:21 final size:22
Alignment explanation
Indices: 121158196--121158236 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
121158186 ACAACTGAGG
* *
121158196 AAAAGAAAGCAAATAAAGTACT
1 AAAAGAAAGAAAAAAAAGTACT
121158218 AAAAGAAA-AAAAAAAAGTA
1 AAAAGAAAGAAAAAAAAGTA
121158237 GAAAAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.73, C:0.05, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAAGAAAGAAAAAAAAGTACT
Found at i:121159736 original size:20 final size:20
Alignment explanation
Indices: 121159707--121159744 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
121159697 GGTATACTTT
*
121159707 TATATGAAATTTTAATTTTG
1 TATATAAAATTTTAATTTTG
*
121159727 TATATAAAATTTTTATTT
1 TATATAAAATTTTAATTT
121159745 GTTCAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TATATAAAATTTTAATTTTG
Found at i:121171846 original size:27 final size:27
Alignment explanation
Indices: 121171808--121171861 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
121171798 TGTTCCATTC
121171808 AATAAGATTGAGATTCTTCAATGCCTG
1 AATAAGATTGAGATTCTTCAATGCCTG
121171835 AATAAGATTGAGATTCTTCAATGCCTG
1 AATAAGATTGAGATTCTTCAATGCCTG
121171862 CTAGAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (27 bp):
AATAAGATTGAGATTCTTCAATGCCTG
Found at i:121175514 original size:249 final size:249
Alignment explanation
Indices: 121175060--121175532 Score: 644
Period size: 249 Copynumber: 1.9 Consensus size: 249
121175050 AGAAGTTATG
121175060 GAGTAAGTTAGAACAAACTCCCTATCTAATTTTCACAAATTCCAAATTTAATTATTTTAAATTTT
1 GAGTAAGTTAGAACAAACTCCCTATCTAATTTTCACAAATTCCAAATTTAATTATTTTAAATTTT
* * * *
121175125 AAATTTTAAAATATAAGTCCAATTATTAATGTTGTTAATATTTTTTTATTAAATTTATCAAATAA
66 AAAATTTAAAATATAAGTCCAATTATTAACGATGTTAACATTTTTTTATTAAATTTATCAAATAA
* * * ** *
121175190 TATTTTAAAATAAAAAAATATTAATTCAATAGTAATGTAATAAAAAAATCTGATATTTTAATTAA
131 CATTTTAAAATAAAAAAATACTAATTCAATAGCAACATAATAAAAAAATCTGATATTTTAATCAA
* * *
121175255 TTTAAATTTAATAAAATAATTTTAACAATGTTAACCATTAGACCTAAATTTACA
196 CTCAAATTTAACAAAATAATTTTAACAATGTTAACCATTAGACCTAAATTTACA
* * * *
121175309 GAGTAAGTTAGAACAAACTCCGTATCTAATTTTCACAAATTCTAAATTTAGTTATTTTAATTTTT
1 GAGTAAGTTAGAACAAACTCCCTATCTAATTTTCACAAATTCCAAATTTAATTATTTTAAATTTT
* * * ** *
121175374 AAAATTTAAAATTTAAGTCTAATTATTAACGATGTTAACA-TTTTTTATTAAATTTATTAGCTTG
66 AAAATTTAAAATATAAGTCCAATTATTAACGATGTTAACATTTTTTTATTAAATTTATCA-AATA
* ** * * *
121175438 ACATTTTGAAATAAAAAAATACTAATTTGATAGCCACATAATTAAAAAAAT-TGATGTTTTCATC
130 ACATTTTAAAATAAAAAAATACTAATTCAATAGCAACATAA-TAAAAAAATCTGATATTTTAATC
*
121175502 AACTCGAATTTAACAAAATAATTTTAACAAT
194 AACTCAAATTTAACAAAATAATTTTAACAAT
121175533 ATTAGTTCGG
Statistics
Matches: 192, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
248 18 0.09
249 165 0.86
250 9 0.05
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (249 bp):
GAGTAAGTTAGAACAAACTCCCTATCTAATTTTCACAAATTCCAAATTTAATTATTTTAAATTTT
AAAATTTAAAATATAAGTCCAATTATTAACGATGTTAACATTTTTTTATTAAATTTATCAAATAA
CATTTTAAAATAAAAAAATACTAATTCAATAGCAACATAATAAAAAAATCTGATATTTTAATCAA
CTCAAATTTAACAAAATAATTTTAACAATGTTAACCATTAGACCTAAATTTACA
Found at i:121176951 original size:46 final size:44
Alignment explanation
Indices: 121176847--121176954 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
121176837 TGTCTTTGAC
** * * *
121176847 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
121176891 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
121176937 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
121176955 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:121179344 original size:29 final size:29
Alignment explanation
Indices: 121179289--121179350 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
121179279 ATTGATTTTA
121179289 AAATTTAAATTTTCAATAATAAAAT-AAT
1 AAATTTAAATTTTCAATAATAAAATAAAT
* *
121179317 AAATTTAGAATTTTCAATAATGAGATAAAT
1 AAATTTA-AATTTTCAATAATAAAATAAAT
121179347 AAAT
1 AAAT
121179351 ATAATTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 7 0.23
29 16 0.53
30 7 0.23
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (29 bp):
AAATTTAAATTTTCAATAATAAAATAAAT
Found at i:121180958 original size:8 final size:8
Alignment explanation
Indices: 121180945--121180970 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
121180935 AATGTATTTC
121180945 TTTATCAT
1 TTTATCAT
121180953 TTTATCAT
1 TTTATCAT
121180961 TTTATCAT
1 TTTATCAT
121180969 TT
1 TT
121180971 ATTCTATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTATCAT
Found at i:121191828 original size:18 final size:17
Alignment explanation
Indices: 121191773--121191829 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
121191763 TGGAGGTTTG
121191773 ATGCCTGGGATGCCTGGA
1 ATGCCT-GGATGCCTGGA
* ** *
121191791 ATGCCAGGAACCCGGAGA
1 ATGCCTGGATGCCTG-GA
121191809 ATGCCTGGTATGCCTGGA
1 ATGCCTGG-ATGCCTGGA
121191827 ATG
1 ATG
121191830 GACAGTGATA
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
17 6 0.21
18 19 0.66
19 4 0.14
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (17 bp):
ATGCCTGGATGCCTGGA
Found at i:121212504 original size:6 final size:6
Alignment explanation
Indices: 121212493--121212517 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
121212483 TCGGCCGACA
121212493 CCTCCG CCTCCG CCTCCG CCTCCG C
1 CCTCCG CCTCCG CCTCCG CCTCCG C
121212518 TTCCTCCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.68, G:0.16, T:0.16
Consensus pattern (6 bp):
CCTCCG
Found at i:121212905 original size:11 final size:12
Alignment explanation
Indices: 121212878--121212910 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
121212868 GGAAGGAGTG
121212878 GAGGTAGAGGAA
1 GAGGTAGAGGAA
*
121212890 GAGGTAG-GGTA
1 GAGGTAGAGGAA
121212901 GAGGTAGAGG
1 GAGGTAGAGG
121212911 TGCGCGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.00, G:0.55, T:0.12
Consensus pattern (12 bp):
GAGGTAGAGGAA
Found at i:121212906 original size:6 final size:6
Alignment explanation
Indices: 121212878--121212911 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
121212868 GGAAGGAGTG
*
121212878 GAGGTA GAGGAA GAGGTA G-GGTA GAGGTA GAGGT
1 GAGGTA GAGGTA GAGGTA GAGGTA GAGGTA GAGGT
121212912 GCGCGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.32, C:0.00, G:0.53, T:0.15
Consensus pattern (6 bp):
GAGGTA
Found at i:121220135 original size:26 final size:25
Alignment explanation
Indices: 121220104--121220157 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
121220094 AAAAATAATT
*
121220104 TAAAAATTATAAA-AAAATTAAATAAA
1 TAAAAA-TA-AAACAAAATTAAAAAAA
121220130 TAAAAATAAAATCAAAATTAAAAAAA
1 TAAAAATAAAA-CAAAATTAAAAAAA
121220156 TA
1 TA
121220158 TATAAAAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 3 0.12
25 2 0.08
26 20 0.80
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (25 bp):
TAAAAATAAAACAAAATTAAAAAAA
Found at i:121221685 original size:16 final size:16
Alignment explanation
Indices: 121221660--121221696 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
121221650 AATTCCTTTA
* *
121221660 AAATTGATATAATTAT
1 AAATTAATATAATGAT
121221676 AAATTAATATAATGAT
1 AAATTAATATAATGAT
121221692 AAATT
1 AAATT
121221697 TATAATTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AAATTAATATAATGAT
Found at i:121229843 original size:2 final size:2
Alignment explanation
Indices: 121229838--121229874 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
121229828 ACAGACATAC
*
121229838 AT AT AT AT AT AT AT AT AT AT AT AT AT -T TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121229875 GACTAATGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:121231991 original size:2 final size:2
Alignment explanation
Indices: 121231984--121232026 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
121231974 GGAACGGAAA
* *
121231984 AT AT AT AT GT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121232026 A
1 A
121232027 AAGAGAGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121232790 original size:21 final size:23
Alignment explanation
Indices: 121232766--121232807 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
121232756 CACTATTACT
121232766 TTGATTTTA-T-TTATTGTTTAA
1 TTGATTTTATTGTTATTGTTTAA
121232787 TTGATTTTATTGTTATTGTTT
1 TTGATTTTATTGTTATTGTTT
121232808 GGATATTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 1 0.05
23 9 0.47
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (23 bp):
TTGATTTTATTGTTATTGTTTAA
Found at i:121233602 original size:20 final size:20
Alignment explanation
Indices: 121233577--121233614 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
121233567 ATATTTACCA
121233577 TAATTCATAAATAGTTTAGG
1 TAATTCATAAATAGTTTAGG
121233597 TAATTCATAAATAGTTTA
1 TAATTCATAAATAGTTTA
121233615 AAGTATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
TAATTCATAAATAGTTTAGG
Found at i:121233777 original size:72 final size:72
Alignment explanation
Indices: 121233629--121233765 Score: 238
Period size: 72 Copynumber: 1.9 Consensus size: 72
121233619 ATGTTCTAGT
* *
121233629 TATAACATCTTTAATATGTTAAGTCCAAAGTTATTAATAATGGTAAATACACACAGGTTAATAAT
1 TATATCATCTTTAATATGTTAAGTCCAAAGTTATTAATAATGATAAATACACACAGGTTAATAAT
121233694 CGTAAAA
66 CGTAAAA
* *
121233701 TATATCATCTTTAATATGTTAGGTCCAAAGTTATTAATAATGATAAATACACACAGGTTTATAAT
1 TATATCATCTTTAATATGTTAAGTCCAAAGTTATTAATAATGATAAATACACACAGGTTAATAAT
121233766 TTATTTATAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (72 bp):
TATATCATCTTTAATATGTTAAGTCCAAAGTTATTAATAATGATAAATACACACAGGTTAATAAT
CGTAAAA
Found at i:121238951 original size:13 final size:13
Alignment explanation
Indices: 121238904--121238958 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
121238894 TGTTAAACAA
121238904 TAAATGATATTTT
1 TAAATGATATTTT
* *
121238917 TAAATAGTAAATACTAT
1 TAAAT-G---ATATTTT
121238934 TAAATGATATTTT
1 TAAATGATATTTT
121238947 TAAATGATATTT
1 TAAATGATATTT
121238959 GATTCTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 22 0.65
14 1 0.03
16 1 0.03
17 10 0.29
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (13 bp):
TAAATGATATTTT
Found at i:121241574 original size:23 final size:23
Alignment explanation
Indices: 121241543--121241595 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
121241533 TATATTTTAG
*
121241543 ATATTAAAATAA-AATAAATTTCA
1 ATATAAAAATAATAATAAA-TTCA
* *
121241566 ATATAAAAATAATAGTATATTCA
1 ATATAAAAATAATAATAAATTCA
121241589 ATATAAA
1 ATATAAA
121241596 TATTATACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (23 bp):
ATATAAAAATAATAATAAATTCA
Found at i:121244520 original size:75 final size:74
Alignment explanation
Indices: 121244399--121244570 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
121244389 TCCATGGCAA
** *
121244399 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
121244459 T-CCATACTG
65 TCCCATACCG
121244468 AGCTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
1 AG-TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
121244533 TCCCATACCG
65 TCCCATACCG
*
121244543 AGT-TAAAAATGTAGGTATGGTATT-TCAA
1 AGTGT-GAAATGTAGGTATGGTATTATCAA
121244571 TGAGGAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 2 0.02
70 18 0.20
73 9 0.10
74 20 0.22
75 41 0.46
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:121244539 original size:35 final size:35
Alignment explanation
Indices: 121244404--121244568 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
121244394 GGCAAAGTGT
* **
121244404 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
121244439 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
121244474 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
121244514 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
121244549 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
121244569 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
34 19 0.16
35 66 0.57
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:121251992 original size:75 final size:75
Alignment explanation
Indices: 121251873--121252044 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
121251863 CATGGCAAAG
** *
121251873 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
121251932 CCATACTGAGC
65 CCATACCGAGC
121251943 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
121252008 CATACCGAGT
66 CATACCGAGC
***
121252018 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
121252045 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:121252011 original size:35 final size:35
Alignment explanation
Indices: 121251876--121252042 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
121251866 GGCAAAGTGT
* **
121251876 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
121251911 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
121251946 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
121251986 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
121252022 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
121252043 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:121252034 original size:36 final size:35
Alignment explanation
Indices: 121251972--121252042 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
121251962 ATTATCAAAT
* *
121251972 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
121252007 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
121252043 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:121262687 original size:21 final size:21
Alignment explanation
Indices: 121262654--121262696 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
121262644 TTAGACGGAT
* *
121262654 TAATTTATGAATC-AATTGAAA
1 TAATTAATCAATCTAATT-AAA
121262675 TAATTAATCAATCTAATTAAA
1 TAATTAATCAATCTAATTAAA
121262696 T
1 T
121262697 CGGACGGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.40
Consensus pattern (21 bp):
TAATTAATCAATCTAATTAAA
Found at i:121263867 original size:19 final size:19
Alignment explanation
Indices: 121263822--121263869 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
121263812 ATATCCAAAC
*
121263822 AATAACAACAAAATAGTGA
1 AATAACAACAAAACAGTGA
* *
121263841 AATGACAACAAAACATTGA
1 AATAACAACAAAACAGTGA
*
121263860 TATAACAACA
1 AATAACAACA
121263870 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.60, C:0.15, G:0.08, T:0.17
Consensus pattern (19 bp):
AATAACAACAAAACAGTGA
Found at i:121264174 original size:18 final size:18
Alignment explanation
Indices: 121264153--121264187 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
121264143 GTTTGATTTG
121264153 ATTAAAAATTCAAAAAAA
1 ATTAAAAATTCAAAAAAA
*
121264171 ATTAAAAATTTAAAAAA
1 ATTAAAAATTCAAAAAA
121264188 TTAGCTAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
ATTAAAAATTCAAAAAAA
Found at i:121268146 original size:22 final size:23
Alignment explanation
Indices: 121268106--121268148 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
121268096 ACTCGGAAAG
* *
121268106 TAATAAATTATATATTTTTATGA
1 TAATAAATAATATAATTTTATGA
121268129 TAATAAA-AATATAATTTTAT
1 TAATAAATAATATAATTTTAT
121268149 TATTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TAATAAATAATATAATTTTATGA
Found at i:121270901 original size:23 final size:24
Alignment explanation
Indices: 121270868--121270915 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
121270858 CTAACTATGA
121270868 TTTTTCTTTTTTGGTCACCCAACT
1 TTTTTCTTTTTTGGTCACCCAACT
121270892 TTTTTCTTTTTTGGTCACCCAACT
1 TTTTTCTTTTTTGGTCACCCAACT
121270916 ATGAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.25, G:0.08, T:0.54
Consensus pattern (24 bp):
TTTTTCTTTTTTGGTCACCCAACT
Found at i:121275739 original size:26 final size:24
Alignment explanation
Indices: 121275710--121275778 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 24
121275700 CGGCATCACT
121275710 ATTTTAATTAAAAAATAATTTTTGAA
1 ATTTTAATTAAAAAATAATTTTT--A
* *
121275736 ATTTTCA--AAAAAA-AA-TATTA
1 ATTTTAATTAAAAAATAATTTTTA
*
121275756 TTTTTAATTAAAAAATAATTTTT
1 ATTTTAATTAAAAAATAATTTTT
121275779 TGAGTTTTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
20 6 0.18
22 9 0.26
23 4 0.12
24 9 0.26
26 6 0.18
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (24 bp):
ATTTTAATTAAAAAATAATTTTTA
Found at i:121278401 original size:13 final size:14
Alignment explanation
Indices: 121278385--121278420 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
121278375 CAATCTCACA
121278385 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
121278398 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
121278411 TCTC-ATTTCA
1 TCTCAATTTCA
121278421 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:121278410 original size:18 final size:19
Alignment explanation
Indices: 121278372--121278412 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
121278362 TGGTTCATGT
121278372 TTTCAATCTCACATCTCAA
1 TTTCAATCTCACATCTCAA
121278391 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCACATCTCAA
121278409 TTTC
1 TTTC
121278413 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTCAATCTCACATCTCAA
Found at i:121278602 original size:39 final size:38
Alignment explanation
Indices: 121278535--121278669 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
121278525 ACCAATATGG
* * *
121278535 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
121278574 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
121278612 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
121278653 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
121278670 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:121278936 original size:18 final size:19
Alignment explanation
Indices: 121278910--121278948 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
121278900 TTTCAATTCA
121278910 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
121278929 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
121278947 AT
1 AT
121278949 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:121280276 original size:5 final size:5
Alignment explanation
Indices: 121280266--121280318 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
121280256 TTACTTATTT
* *
121280266 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
121280314 ATATA
1 ATATA
121280319 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:121280282 original size:12 final size:12
Alignment explanation
Indices: 121280265--121280320 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
121280255 TTTACTTATT
121280265 TATATAATATAA
1 TATATAATATAA
121280277 TATATAATATAATA
1 TATATAATAT-A-A
121280291 TACTATAATATAA
1 TA-TATAATATAA
*
121280304 TA-ATAATTTAA
1 TATATAATATAA
121280315 TATATA
1 TATATA
121280321 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:121283188 original size:10 final size:9
Alignment explanation
Indices: 121283168--121283208 Score: 55
Period size: 10 Copynumber: 4.3 Consensus size: 9
121283158 TAGACATGCT
121283168 AATAAATAA
1 AATAAATAA
121283177 AATAACATAA
1 AATAA-ATAA
121283187 AATAAAGTAA
1 AATAAA-TAA
*
121283197 AATAAACAA
1 AATAAATAA
121283206 AAT
1 AAT
121283209 TTATTTAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 11 0.38
10 18 0.62
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (9 bp):
AATAAATAA
Found at i:121283407 original size:9 final size:9
Alignment explanation
Indices: 121283384--121283430 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
121283374 TCCTTGGTAG
121283384 AGAAG-AAA
1 AGAAGAAAA
121283392 A-AAGAAAA
1 AGAAGAAAA
121283400 AGAAGAAAA
1 AGAAGAAAA
121283409 AGAAGAAAA
1 AGAAGAAAA
*
121283418 AGAAGAGAA
1 AGAAGAAAA
121283427 AGAA
1 AGAA
121283431 CAAAGGAGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
7 3 0.08
8 5 0.14
9 28 0.78
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:121283460 original size:21 final size:19
Alignment explanation
Indices: 121283400--121283450 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
121283390 AAAAAGAAAA
* * *
121283400 AGAAGAAAAAGAAGAAA-A
1 AGAAGAGAAAGAACAAAGG
121283418 AGAAGAGAAAGAACAAAGG
1 AGAAGAGAAAGAACAAAGG
121283437 AGAAGGAGAAAGAA
1 AGAA-GAGAAAGAA
121283451 AAGTAGGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 15 0.54
19 4 0.14
20 9 0.32
ACGTcount: A:0.69, C:0.02, G:0.29, T:0.00
Consensus pattern (19 bp):
AGAAGAGAAAGAACAAAGG
Found at i:121290645 original size:7 final size:8
Alignment explanation
Indices: 121290618--121290651 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
121290608 ATTTAAAGTA
121290618 TTTTATTT
1 TTTTATTT
121290626 TTTTATTGCT
1 TTTTATT--T
121290636 TTTTATTT
1 TTTTATTT
121290644 TTTTATTT
1 TTTTATTT
121290652 AAGAGTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 16 0.67
10 8 0.33
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTATTT
Found at i:121295541 original size:6 final size:7
Alignment explanation
Indices: 121295524--121295553 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
121295514 TTCCTTTGAC
121295524 AAAAAAT
1 AAAAAAT
121295531 AAAAAAT
1 AAAAAAT
121295538 AAAAAAT
1 AAAAAAT
121295545 AAAAAAT
1 AAAAAAT
121295552 AA
1 AA
121295554 TTTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:121298847 original size:2 final size:2
Alignment explanation
Indices: 121298840--121298868 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121298830 AATTGCTGTA
121298840 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121298869 GATTCGGTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121301224 original size:14 final size:14
Alignment explanation
Indices: 121301202--121301235 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
121301192 TCTTTACGAA
121301202 TTTAAATTTTAGTT
1 TTTAAATTTTAGTT
* *
121301216 TTTATATTTTATTT
1 TTTAAATTTTAGTT
121301230 TTTAAA
1 TTTAAA
121301236 AAAAGTTCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
TTTAAATTTTAGTT
Found at i:121302534 original size:13 final size:14
Alignment explanation
Indices: 121302509--121302537 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
121302499 AAAGGGGAAT
121302509 GAAGAACAAAATGG
1 GAAGAACAAAATGG
121302523 GAAGAA-AAAATGG
1 GAAGAACAAAATGG
121302536 GA
1 GA
121302538 GTGAAGGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.03, G:0.31, T:0.07
Consensus pattern (14 bp):
GAAGAACAAAATGG
Found at i:121312171 original size:57 final size:56
Alignment explanation
Indices: 121312099--121312222 Score: 193
Period size: 52 Copynumber: 2.3 Consensus size: 56
121312089 AAGCCATCTA
*
121312099 AACTCTTAGAAATTAAGTTAATTACAGAAATGCTATACTTAGGCAATTAAAGAGGCG
1 AACTCTTAGAAATTAA-TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCG
*
121312156 AACTCTTAG--A--AATTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGTG
1 AACTCTTAGAAATTAATTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCG
121312208 AACTCTTAGAAATTA
1 AACTCTTAGAAATTA
121312223 GTGACTTTAT
Statistics
Matches: 61, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
52 47 0.77
53 2 0.03
54 1 0.02
55 1 0.02
56 1 0.02
57 9 0.15
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (56 bp):
AACTCTTAGAAATTAATTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCG
Found at i:121312184 original size:52 final size:52
Alignment explanation
Indices: 121312116--121312222 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
121312106 AGAAATTAAG
*
121312116 TTAATTACAGAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
1 TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
*
121312168 TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGTGAACTCTTAGAAA
1 TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
121312220 TTA
1 TTA
121312223 GTGACTTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (52 bp):
TTAATTACAAAAATGCTATACTTAGGCAATTAAAGAGGCGAACTCTTAGAAA
Found at i:121312292 original size:39 final size:39
Alignment explanation
Indices: 121312224--121312301 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 39
121312214 TAGAAATTAG
*
121312224 TGACTTTATTCAAGTGAGTGCTTCCCCCCCTCCCCCCTC
1 TGACTTTATTCAAGTGAGTGCTTCCCCCCGTCCCCCCTC
121312263 TGACTTTATTCAAAAGTGAGTGCTT-CCCCCGTCCCCCCT
1 TGACTTTATTC--AAGTGAGTGCTTCCCCCCGTCCCCCCT
121312302 TTTACCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
39 11 0.31
40 13 0.36
41 12 0.33
ACGTcount: A:0.15, C:0.40, G:0.14, T:0.31
Consensus pattern (39 bp):
TGACTTTATTCAAGTGAGTGCTTCCCCCCGTCCCCCCTC
Found at i:121318710 original size:11 final size:11
Alignment explanation
Indices: 121318671--121318711 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
121318661 AAAAGTTACT
*
121318671 TTTTGCTATTA
1 TTTTGTTATTA
*
121318682 TTTTGTCATTA
1 TTTTGTTATTA
121318693 TTTTGTTATTA
1 TTTTGTTATTA
*
121318704 TATTGTTA
1 TTTTGTTA
121318712 CAATTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.66
Consensus pattern (11 bp):
TTTTGTTATTA
Found at i:121329539 original size:5 final size:5
Alignment explanation
Indices: 121329529--121329560 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
121329519 TTATGTTTTA
121329529 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
121329561 ATAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:121330900 original size:18 final size:19
Alignment explanation
Indices: 121330879--121330917 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
121330869 ATATATAGAT
121330879 ATATATATTGAATA-TTGA
1 ATATATATTGAATACTTGA
*
121330897 ATATATATTGATTACTTGA
1 ATATATATTGAATACTTGA
121330916 AT
1 AT
121330918 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (19 bp):
ATATATATTGAATACTTGA
Found at i:121331267 original size:39 final size:39
Alignment explanation
Indices: 121331157--121331291 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
121331147 GACCTCGAGT
* * * *
121331157 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
121331198 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
121331236 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
121331275 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
121331292 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:121331435 original size:18 final size:19
Alignment explanation
Indices: 121331414--121331454 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
121331404 AATAAAATGA
121331414 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
121331432 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
121331451 GAAA
1 GAAA
121331455 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:121338670 original size:2 final size:2
Alignment explanation
Indices: 121338663--121338770 Score: 216
Period size: 2 Copynumber: 54.0 Consensus size: 2
121338653 ACTTCTATTC
121338663 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
121338705 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
121338747 CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT
121338771 ATATATATAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 106 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:121338775 original size:2 final size:2
Alignment explanation
Indices: 121338770--121338833 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
121338760 TCTCTCTCTC
121338770 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121338812 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
121338834 CACGCAAAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121340160 original size:35 final size:35
Alignment explanation
Indices: 121340094--121340169 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
121340084 AATAAAATTT
*
121340094 AAATATTTTTAAATTATATTCATAATAAAAT-ATCA
1 AAATATTTTCAAATTATATTCATAATAAAATAAT-A
* *
121340129 AAATATTTTACAAATTATATTTA-AATCAAATAATA
1 AAATATTTT-CAAATTATATTCATAATAAAATAATA
121340164 AAATAT
1 AAATAT
121340170 AAATTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 23 0.64
36 13 0.36
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (35 bp):
AAATATTTTCAAATTATATTCATAATAAAATAATA
Found at i:121340235 original size:16 final size:18
Alignment explanation
Indices: 121340204--121340236 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
121340194 TTTATAAATA
121340204 AAAATTATATATTTATTG
1 AAAATTATATATTTATTG
121340222 AAAATTA-A-ATTTATT
1 AAAATTATATATTTATT
121340237 AAATAATGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (18 bp):
AAAATTATATATTTATTG
Found at i:121343602 original size:2 final size:2
Alignment explanation
Indices: 121343595--121343625 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
121343585 AATATGAATG
121343595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121343626 GTAAGTAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121343744 original size:3 final size:3
Alignment explanation
Indices: 121343736--121343767 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
121343726 TATGGATCCT
121343736 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
121343768 GAAAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:121348133 original size:31 final size:31
Alignment explanation
Indices: 121348097--121348165 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
121348087 GACAAAAAAA
121348097 AAACTCAGATATTAAAGTGAATAGTGAAACC
1 AAACTCAGATATTAAAGTGAATAGTGAAACC
121348128 AAACTCAGATATTAAAGTGAATAGTGAAACC
1 AAACTCAGATATTAAAGTGAATAGTGAAACC
121348159 AAACTCA
1 AAACTCA
121348166 AATACCAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.22
Consensus pattern (31 bp):
AAACTCAGATATTAAAGTGAATAGTGAAACC
Found at i:121351960 original size:31 final size:31
Alignment explanation
Indices: 121351897--121351960 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
121351887 CCTAATTAAA
* *
121351897 TTTTTAAAAAATTTAAGAGTTTAATGAGATT
1 TTTTTAAAAAATTTAAGAGTCTAATGAAATT
* * *
121351928 TTTTTAAAAAATTT-GGGGTCTAATGAAAAT
1 TTTTTAAAAAATTTAAGAGTCTAATGAAATT
121351958 TTT
1 TTT
121351961 AATTTTTTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (31 bp):
TTTTTAAAAAATTTAAGAGTCTAATGAAATT
Found at i:121352445 original size:21 final size:21
Alignment explanation
Indices: 121352419--121352459 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
121352409 TCAAAACAAC
*
121352419 ATAGTTTTGCCTTTTAACTTA
1 ATAGTTTTGACTTTTAACTTA
121352440 ATAGTTTTGACTTTTAACTT
1 ATAGTTTTGACTTTTAACTT
121352460 TAGAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.54
Consensus pattern (21 bp):
ATAGTTTTGACTTTTAACTTA
Found at i:121357057 original size:18 final size:18
Alignment explanation
Indices: 121357012--121357075 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
121357002 ATGAAATAAG
121357012 TTATATGTTGTTGTTC-T
1 TTATATGTTGTTGTTCAT
*
121357029 TTAGCGA-GTTGTTGTTCAT
1 TTA--TATGTTGTTGTTCAT
121357048 TTATATGTTGTTGTTCAT
1 TTATATGTTGTTGTTCAT
*
121357066 TTATAAGTTG
1 TTATATGTTG
121357076 AAGTTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.17, C:0.06, G:0.20, T:0.56
Consensus pattern (18 bp):
TTATATGTTGTTGTTCAT
Found at i:121358958 original size:14 final size:16
Alignment explanation
Indices: 121358939--121358970 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
121358929 GAATAGACCC
121358939 AAAATAAA-AA-TCCA
1 AAAATAAATAAGTCCA
121358953 AAAATAAATAAGTCCA
1 AAAATAAATAAGTCCA
121358969 AA
1 AA
121358971 GAGTCCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.69, C:0.12, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAATAAATAAGTCCA
Found at i:121365466 original size:11 final size:11
Alignment explanation
Indices: 121365450--121365493 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
121365440 ATCAAATTCC
121365450 AAAAACAAAAA
1 AAAAACAAAAA
*
121365461 AAAAACAACAA
1 AAAAACAAAAA
*
121365472 AAAAACAATAA
1 AAAAACAAAAA
*
121365483 AAAAAGAAAAA
1 AAAAACAAAAA
121365494 GGTTGCTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.02
Consensus pattern (11 bp):
AAAAACAAAAA
Found at i:121366187 original size:20 final size:21
Alignment explanation
Indices: 121366162--121366214 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
121366152 AAATCAGAAT
* *
121366162 AAAAAAGA-GAAATAAAAAGA
1 AAAAAAGATCAAAAAAAAAGA
121366182 AAAAAA-ATCAAAAAAAAAGA
1 AAAAAAGATCAAAAAAAAAGA
*
121366202 AAGAAAGAATCAA
1 AAAAAAG-ATCAA
121366215 TCAAAGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.78
22 5 0.19
ACGTcount: A:0.79, C:0.04, G:0.11, T:0.06
Consensus pattern (21 bp):
AAAAAAGATCAAAAAAAAAGA
Found at i:121366188 original size:10 final size:10
Alignment explanation
Indices: 121366147--121366203 Score: 51
Period size: 10 Copynumber: 5.3 Consensus size: 10
121366137 TGAGACCTTA
121366147 AAAAAAAATCAG
1 AAAAAAAA--AG
121366159 AATAAAAAAGAG
1 AA-AAAAAA-AG
*
121366171 AAATAAAAAG
1 AAAAAAAAAG
**
121366181 AAAAAAAATC
1 AAAAAAAAAG
121366191 AAAAAAAAAG
1 AAAAAAAAAG
121366201 AAA
1 AAA
121366204 GAAAGAATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 20 0.54
11 5 0.14
12 6 0.16
13 6 0.16
ACGTcount: A:0.81, C:0.04, G:0.09, T:0.07
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:121367414 original size:64 final size:64
Alignment explanation
Indices: 121367334--121367652 Score: 566
Period size: 64 Copynumber: 5.0 Consensus size: 64
121367324 ATATATCATT
* *
121367334 CATCACATCTAATTAGGTGCATTTGATTCATTTTAATCATAGCATCCTAATTATTTGACATAAG
1 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
121367398 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
1 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
121367462 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
1 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
* *
121367526 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATTCTAATTAGTTGACATAAG
1 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
* * * *
121367590 CATCACATCTAGTTAGGAGCATTTGATTTATTTTGATCATAACATCCTAATTATTTGGCATAA
1 CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAA
121367653 ACATGATACA
Statistics
Matches: 245, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 245 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (64 bp):
CATCACATCTAGTTAGGTGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
Found at i:121369088 original size:46 final size:44
Alignment explanation
Indices: 121368984--121369091 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
121368974 TGTCTTTGAC
** * * *
121368984 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
121369028 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
121369074 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
121369092 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:121376459 original size:46 final size:44
Alignment explanation
Indices: 121376355--121376462 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
121376345 TGTCTTTGAC
** * * *
121376355 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
121376399 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
121376445 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
121376463 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:121378138 original size:45 final size:45
Alignment explanation
Indices: 121378019--121378140 Score: 110
Period size: 45 Copynumber: 2.7 Consensus size: 45
121378009 GAAAAGACAA
* * *
121378019 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTGACGATAGTAG
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGATAGAAGATAGCAG
* * **
121378064 -TCTTATCTCCCTG-AGGT-AGCAA-GGAAGCAGACTAGAATTTA-CAG
1 ATCTTATCTCCATGTA--TCGGCAATGG-AGCAGA-TAGAAGATAGCAG
121378108 ATCTTATCTCCATGTATCGGCAATGGAGCAGAT
1 ATCTTATCTCCATGTATCGGCAATGGAGCAGAT
121378141 TTTAACTATC
Statistics
Matches: 60, Mismatches: 9, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
43 3 0.05
44 26 0.43
45 28 0.47
46 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
ATCTTATCTCCATGTATCGGCAATGGAGCAGATAGAAGATAGCAG
Found at i:121378332 original size:132 final size:133
Alignment explanation
Indices: 121378196--121378456 Score: 325
Period size: 132 Copynumber: 1.9 Consensus size: 133
121378186 GAAGAATGAG
*
121378196 TCTTATCTTTCTGAGGCAGCAA-GAGAGCAGACTACAG-ATTGAAGATCTTATCTCCCTAAGCA-
1 TCTTATCTTCCTGAGGCAGCAAGGA-AGCAGACTA-AGAATTGAAGATCTTATCTCCCTAAG-AT
* * * *
121378258 GTAGCGGAGCAGA-TCGAAGATGGTGAATCTTATCTCCATGTAT-AGGCAATGGAGCAGATTTTA
63 GCAGCGAAGCAGATTCGAAGATGGGGAATCTTATCTCCATGTATCA-GCAATGGAACAGATTTTA
121378321 CCACCAA
127 CCACCAA
* * * *
121378328 TCTTATCTTCCTGAGGTAGCAAGGAAGCGGACTAAGAATTGAAGATTTTATCTCCCTGAGATTGC
1 TCTTATCTTCCTGAGGCAGCAAGGAAGCAGACTAAGAATTGAAGATCTTATCTCCCTAAGA-TGC
* *
121378393 AGCGAAGCAGATCTTCGCAGATGGGGAATCTTATCTCCATGTATCAGCGATGGAACAGATTTTA
65 AGCGAAGCAGA--TTCGAAGATGGGGAATCTTATCTCCATGTATCAGCAATGGAACAGATTTTA
121378457 GTCACTGACT
Statistics
Matches: 110, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
131 3 0.03
132 49 0.45
133 13 0.12
136 44 0.40
137 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (133 bp):
TCTTATCTTCCTGAGGCAGCAAGGAAGCAGACTAAGAATTGAAGATCTTATCTCCCTAAGATGCA
GCGAAGCAGATTCGAAGATGGGGAATCTTATCTCCATGTATCAGCAATGGAACAGATTTTACCAC
CAA
Found at i:121378660 original size:176 final size:179
Alignment explanation
Indices: 121378331--121378724 Score: 496
Period size: 176 Copynumber: 2.2 Consensus size: 179
121378321 CCACCAATCT
* * * *
121378331 TATCTTCCTGAGGTAGCAAGGAAGCGGACT-AAGAATTGAAGATTTTATCTCCCTGAGATTGCAG
1 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG-ATTGAAGATCTTATCTCCCTAAGAAT-CAG
** * *
121378395 CGAAGCAGATCTTCGCAGATGGGGAATCTTATCTCCATGTATCAGCGATGGAACAGATTTTAGTC
64 CGAAGCAGATCTAAG-AGATGGCGAATCTTATCTCCATGTATCAGCAATGGAACAGATTTTAGTC
*
121378460 ACTGACTTTATTTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTCA
128 ACTGACTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGTAGTCA
* *
121378511 TATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAAT-AGT
1 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAG-AATCAGC
* * * *
121378575 GGAGTAGATC-AAG-GATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAG-CTA
65 GAAGCAGATCTAAGAGATGGCGAATCTTATCTCCATGTATCAGCAATGGAACAGATTTTAGTC-A
* ** * *
121378637 -TTAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATTGTAGTCT
129 CTGA-CTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGTAGTCA
*
121378688 TATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATT
1 TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
121378725 AAAGGTTGGA
Statistics
Matches: 187, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
175 3 0.02
176 80 0.43
177 39 0.21
178 1 0.01
179 10 0.05
180 49 0.26
181 5 0.03
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (179 bp):
TATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGAATCAGCG
AAGCAGATCTAAGAGATGGCGAATCTTATCTCCATGTATCAGCAATGGAACAGATTTTAGTCACT
GACTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGTAGTCA
Found at i:121379146 original size:14 final size:16
Alignment explanation
Indices: 121379127--121379158 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
121379117 GAATAGACCC
121379127 AAAATAAA-AA-TCCA
1 AAAATAAATAAGTCCA
121379141 AAAATAAATAAGTCCA
1 AAAATAAATAAGTCCA
121379157 AA
1 AA
121379159 GAGTCCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.69, C:0.12, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAATAAATAAGTCCA
Found at i:121382376 original size:16 final size:16
Alignment explanation
Indices: 121382357--121382400 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 16
121382347 TAAAAATAAT
121382357 TTAAAATATAAATTTA
1 TTAAAATATAAATTTA
121382373 TTAATATATATAAATTTA
1 TTAA-A-ATATAAATTTA
*
121382391 TTAATATATA
1 TTAAAATATA
121382401 TATAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 9 0.36
17 1 0.04
18 15 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAATATAAATTTA
Found at i:121382383 original size:18 final size:18
Alignment explanation
Indices: 121382362--121382402 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
121382352 ATAATTTAAA
121382362 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
121382380 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
121382398 ATATA
1 ATATA
121382403 TAAAAACAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:121382542 original size:14 final size:15
Alignment explanation
Indices: 121382492--121382543 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 15
121382482 CGAGGAAAGT
*
121382492 AAATCATTTTTTAG-
1 AAATCATTTTCTAGA
*
121382506 AAATCATTTTCCA-A
1 AAATCATTTTCTAGA
121382520 AAATCATTTTCTAGA
1 AAATCATTTTCTAGA
121382535 AAAT-ATTTT
1 AAATCATTTT
121382544 ACCTGCAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 28 0.85
15 5 0.15
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (15 bp):
AAATCATTTTCTAGA
Found at i:121385895 original size:25 final size:26
Alignment explanation
Indices: 121385835--121385883 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
121385825 ATTTGTTTTA
*
121385835 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
121385859 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
121385884 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:121386468 original size:9 final size:8
Alignment explanation
Indices: 121386454--121386492 Score: 60
Period size: 8 Copynumber: 4.6 Consensus size: 8
121386444 AAAAATAATT
121386454 TAAAAATTA
1 TAAAAA-TA
121386463 TAAAAATA
1 TAAAAATA
121386471 TTAAAAATA
1 -TAAAAATA
121386480 TAAAAATA
1 TAAAAATA
121386488 TAAAA
1 TAAAA
121386493 TTTAATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 15 0.52
9 14 0.48
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAAAATA
Found at i:121386481 original size:17 final size:18
Alignment explanation
Indices: 121386453--121386492 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
121386443 AAAAAATAAT
121386453 TTAAAAATTATAAAAATA
1 TTAAAAATTATAAAAATA
121386471 TTAAAAA-TATAAAAATA
1 TTAAAAATTATAAAAATA
121386488 -TAAAA
1 TTAAAA
121386493 TTTAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 5 0.23
17 10 0.45
18 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TTAAAAATTATAAAAATA
Found at i:121392513 original size:21 final size:21
Alignment explanation
Indices: 121392483--121392522 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
121392473 AGCATGACAA
121392483 TTCAGATTTTTCCTCTTGATT
1 TTCAGATTTTTCCTCTTGATT
* *
121392504 TTCAGTTTTTTTCTCTTGA
1 TTCAGATTTTTCCTCTTGA
121392523 AAAATTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.17, G:0.10, T:0.60
Consensus pattern (21 bp):
TTCAGATTTTTCCTCTTGATT
Found at i:121398487 original size:93 final size:93
Alignment explanation
Indices: 121398377--121398549 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
121398367 CGCCTATAAG
* * *
121398377 CGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
121398442 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
121398470 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
121398535 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
121398550 CAAACATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:121398545 original size:46 final size:46
Alignment explanation
Indices: 121398372--121398545 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
121398362 TAACCCGCCT
* * * *
121398372 ATAAGCGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
121398418 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCC
*** *
121398464 ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
*
121398511 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
121398546 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
Found at i:121398564 original size:46 final size:46
Alignment explanation
Indices: 121398421--121398564 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
121398411 CGCATCCATA
* *
121398421 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
121398470 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
121398514 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
121398560 AGTGA
1 AGTGA
121398565 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.43
47 31 0.41
49 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:121399996 original size:16 final size:16
Alignment explanation
Indices: 121399975--121400006 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
121399965 AGCTATTCCC
121399975 GTTTCGCTCACTGTTA
1 GTTTCGCTCACTGTTA
121399991 GTTTCGCTCACTGTTA
1 GTTTCGCTCACTGTTA
121400007 CTACATGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (16 bp):
GTTTCGCTCACTGTTA
Found at i:121403607 original size:23 final size:23
Alignment explanation
Indices: 121403577--121403625 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
121403567 TACAAACATG
121403577 ACAATTGAGTCTTAGCTTGATTA
1 ACAATTGAGTCTTAGCTTGATTA
121403600 ACAATTGAGTCTTAGCTTGATTA
1 ACAATTGAGTCTTAGCTTGATTA
121403623 ACA
1 ACA
121403626 TGAGCAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (23 bp):
ACAATTGAGTCTTAGCTTGATTA
Found at i:121405487 original size:20 final size:20
Alignment explanation
Indices: 121405450--121405488 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
121405440 TTATTGCTCT
*
121405450 TCTTTATTTTCATATTTTTG
1 TCTTTATTTTAATATTTTTG
121405470 TCTTTATTATTAAT-TTTTT
1 TCTTTATT-TTAATATTTTT
121405489 AAACAATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.72
Consensus pattern (20 bp):
TCTTTATTTTAATATTTTTG
Found at i:121406488 original size:31 final size:31
Alignment explanation
Indices: 121406419--121406480 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
121406409 ATTAACAGCC
* * *
121406419 CAATGATTTAAATGAACACTTTCAAATAATT
1 CAATGACTTAAATAAAAACTTTCAAATAATT
*
121406450 CAATGACTTAAATAAAAACTTTTAAATAATT
1 CAATGACTTAAATAAAAACTTTCAAATAATT
121406481 TAGTGACTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.35
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCAAATAATT
Found at i:121407032 original size:31 final size:31
Alignment explanation
Indices: 121406966--121407032 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
121406956 TTAGTCCTTG
* * *
121406966 AACTTAGCAATTATTCTCATATTAGAACCTG
1 AACTTAGCAATTATTCTCACATTAGAACATA
**
121406997 AACTTAGCAATTATTCTCACATTAGGGCATA
1 AACTTAGCAATTATTCTCACATTAGAACATA
121407028 AACTT
1 AACTT
121407033 TAAAGTTTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (31 bp):
AACTTAGCAATTATTCTCACATTAGAACATA
Found at i:121408383 original size:3 final size:3
Alignment explanation
Indices: 121408375--121408400 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
121408365 ACTTAGTTGC
121408375 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
121408401 TAGTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:121413329 original size:2 final size:2
Alignment explanation
Indices: 121413322--121413349 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
121413312 AACATCATTC
121413322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121413350 ATTTGCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121414760 original size:51 final size:50
Alignment explanation
Indices: 121414702--121414805 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 50
121414692 AAGCCCCCCC
**
121414702 AAAAAAAAACCTAACCCCAAAAA-AAAAAGAAAAAACCTAACCCCCAAAAAA
1 AAAAAAAAACCTAACCAAAAAAAGAAAAAG-AAAAACCTAA-CCCCAAAAAA
121414753 AAAAAAAAACCTAACCAAAAAAAGAAAAAGAAAAACCTAACCCCAAAAAA
1 AAAAAAAAACCTAACCAAAAAAAGAAAAAGAAAAACCTAACCCCAAAAAA
121414803 AAA
1 AAA
121414806 CTAAGAAACC
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
50 13 0.26
51 31 0.62
52 6 0.12
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.04
Consensus pattern (50 bp):
AAAAAAAAACCTAACCAAAAAAAGAAAAAGAAAAACCTAACCCCAAAAAA
Found at i:121414817 original size:26 final size:26
Alignment explanation
Indices: 121414705--121414805 Score: 152
Period size: 26 Copynumber: 3.9 Consensus size: 26
121414695 CCCCCCCAAA
121414705 AAAAAACCTAACCCCAAAAAAAAAAG
1 AAAAAACCTAACCCCAAAAAAAAAAG
*
121414731 AAAAAACCTAACCCCCAAAAAAAAA-
1 AAAAAACCTAACCCCAAAAAAAAAAG
**
121414756 AAAAAACCTAACCAAAAAAAGAAAAAG
1 AAAAAACCTAACCCCAAAAA-AAAAAG
121414783 -AAAAACCTAACCCCAAAAAAAAA
1 AAAAAACCTAACCCCAAAAAAAAA
121414806 CTAAGAAACC
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
25 21 0.31
26 46 0.69
ACGTcount: A:0.70, C:0.23, G:0.03, T:0.04
Consensus pattern (26 bp):
AAAAAACCTAACCCCAAAAAAAAAAG
Done.