Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 402 of 410
Found at i:121415363 original size:2 final size:2
Alignment explanation
Indices: 121415358--121415386 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121415348 TAAATACTAT
121415358 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121415387 TTTAAATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121415492 original size:2 final size:2
Alignment explanation
Indices: 121415479--121415529 Score: 75
Period size: 2 Copynumber: 25.5 Consensus size: 2
121415469 ATATTTTATG
* *
121415479 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
121415521 TA CA TA TA T
1 TA TA TA TA T
121415530 TATTTTATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:121415572 original size:15 final size:14
Alignment explanation
Indices: 121415468--121415576 Score: 55
Period size: 14 Copynumber: 8.0 Consensus size: 14
121415458 TATATTAGTG
121415468 TATA-TTTTATGTA
1 TATATTTTTATGTA
* * *
121415481 TATATGTATATATA
1 TATATTTTTATGTA
* * *
121415495 TATATATATATATA
1 TATATTTTTATGTA
* *
121415509 TATATATATATGTA
1 TATATTTTTATGTA
* * *
121415523 CATA-TATTAT-TT
1 TATATTTTTATGTA
* * *
121415535 TATATTATTGT-TG
1 TATATTTTTATGTA
121415548 TATATTTTTATGTA
1 TATATTTTTATGTA
121415562 TATATTTTTTATGTA
1 TATA-TTTTTATGTA
121415577 CGTTTCCTAA
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
12 4 0.05
13 22 0.29
14 40 0.53
15 10 0.13
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (14 bp):
TATATTTTTATGTA
Found at i:121417387 original size:12 final size:12
Alignment explanation
Indices: 121417367--121417402 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
121417357 AGTCATTTGA
121417367 CATTCATGCATT
1 CATTCATGCATT
*
121417379 CATTTATGCATT
1 CATTCATGCATT
*
121417391 CATTCATTCATT
1 CATTCATGCATT
121417403 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:121424204 original size:71 final size:69
Alignment explanation
Indices: 121424106--121424280 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
121424096 TTTTCAAGGG
* *
121424106 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
121424170 GTTTT
65 GTTTT
** * *
121424175 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
121424240 TGTTTT
64 TGTTTT
** * *
121424246 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
121424281 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:121424401 original size:72 final size:71
Alignment explanation
Indices: 121424280--121424445 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
121424270 GAGTTAAGCC
** * *
121424280 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
121424344 TGAGGTA
65 TGAGGTA
*
121424351 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
121424416 TGAGGTA
65 TGAGGTA
* *
121424423 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
121424446 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:121424541 original size:140 final size:140
Alignment explanation
Indices: 121424378--121425838 Score: 2707
Period size: 140 Copynumber: 10.5 Consensus size: 140
121424368 TTAATTTCAA
121424378 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
121424443 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121424508 TCAAAATCAG
131 TCAAAATCAG
*
121424518 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121424583 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121424648 TCAAAATCAG
131 TCAAAATCAG
*
121424658 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
121424723 TTTACGTTGTTCAAGAATCAACTCATATTGGGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121424788 TCAAAATCAG
131 TCAAAATCAG
* *
121424798 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTCAATTTTTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121424863 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121424928 TCAAAATCAG
131 TCAAAATCAG
121424938 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
121425003 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121425068 TCAAAATCAG
131 TCAAAATCAG
*
121425078 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121425143 TTTAC---GTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121425205 TCAAAATCAG
131 TCAAAATCAG
* *
121425215 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGCTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121425280 TTTACGTTGTTCAAGAATCAAAC-CATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTT
66 TTTACGTTGTTCAAGAATC-AACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTT
121425344 TTCAAAATCAG
130 TTCAAAATCAG
*
121425355 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121425420 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121425485 TCAAAATCAG
131 TCAAAATCAG
*
121425495 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121425560 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
121425625 TCAAAATCAG
131 TCAAAATCAG
121425635 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTG-TTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
121425699 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
* *
121425764 TAAAAATCAA
131 TCAAAATCAG
* * * *
121425774 CTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
121425839 AAAAAAAAAA
Statistics
Matches: 1286, Mismatches: 29, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
137 134 0.10
139 136 0.11
140 1013 0.79
141 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:121425516 original size:697 final size:697
Alignment explanation
Indices: 121424374--121425838 Score: 2711
Period size: 697 Copynumber: 2.1 Consensus size: 697
121424364 TGTTTTAATT
*
121424374 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAATTTCTGTTT
*
121424439 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTTAC
66 TCAATTTAC--TGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
121424504 TTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCA
129 TTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCA
121424569 ATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTT
194 ATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTT
121424634 TAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGA
259 TAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGA
*
121424699 GGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGGGAGAGGTGGG
324 GGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGG
121424764 TTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
389 TTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * *
121424829 GTCATGCTGAGGTATTTTCAATTTTTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGC
454 CTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGC
121424894 GAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGT
519 GAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGT
121424959 TGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAA
584 TGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTG-TTTCAATTTACGTTGTTCAAGAATCAA
* *
121425024 CTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTTTACTTTTTCAAAA
648 CTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTAAAAA
*
121425074 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAATTTCTGTTT
121425139 TCAATTTAC-GTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
66 TCAATTTACTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
* *
121425203 TTTCAAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCTCAGCTCACGCTGAGGTATTTTCAAT
131 TTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAAT
121425268 TTCTGTTTTCAATTTACGTTGTTCAAGAATCAAAC-CATATTGCGAGAGGTGGGTTGAACCTTTT
196 TTCTGTTTTCAATTTACGTTGTTCAAGAATC-AACTCATATTGCGAGAGGTGGGTTGAACCTTTT
*
121425332 AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAG
260 AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGAG
*
121425397 GTATTTTCAATTTTTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGT
325 GTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGT
121425462 TGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGC
390 TGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGC
121425527 TCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCG
455 TCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCG
121425592 AGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTT
520 AGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTT
*
121425657 GAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAATTTATGTTGTTCAAGAATCAACT
585 GAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAATTTACGTTGTTCAAGAATCAACT
121425722 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTAAAAA
650 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTAAAAA
* *
121425770 TCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGCTGAGGTAATTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GATCACGCTGAGGTATTTTCAATTTCTGTT
*
121425834 GTCAA
65 TTCAA
121425839 AAAAAAAAAA
Statistics
Matches: 745, Mismatches: 18, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
696 136 0.18
697 534 0.72
698 3 0.00
700 72 0.10
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (697 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAATTTCTGTTT
TCAATTTACTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
TTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACGCTGAGGTATTTTCAAT
TTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTA
ATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGCTGAGG
TATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTT
GAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGCT
CACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGA
GAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAATTTACGTTGTTCAAGAATCAACTC
ATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTAAAAA
Found at i:121425957 original size:75 final size:74
Alignment explanation
Indices: 121425765--121426182 Score: 509
Period size: 72 Copynumber: 5.5 Consensus size: 74
121425755 TCTACTTTTT
* * *
121425765 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
121425830 TGTTGTCAAAAAAAA
66 TGTTTTC------AA
* * * *
121425845 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
121425910 TGTCTTTCAA
66 TGT-TTTCAA
* *
121425920 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
121425985 TATTTTC--
66 TGTTTTCAA
* * * * * *
121425992 AAAATTGAACTCATATTGCGAGAAATGAGTTGAGCTTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
121426057 TGTTTTCAA
66 TGTTTTCAA
* * * *
121426066 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGATGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
121426130 TTCTGTCTTTCAA
63 TTCTGT-TTTCAA
* *
121426143 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAG
121426183 ATCACACACT
Statistics
Matches: 295, Mismatches: 35, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
72 63 0.21
73 1 0.00
74 36 0.12
75 63 0.21
76 25 0.08
77 42 0.14
78 1 0.00
80 61 0.21
81 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTCAA
Found at i:121427081 original size:27 final size:26
Alignment explanation
Indices: 121427048--121427128 Score: 121
Period size: 25 Copynumber: 3.1 Consensus size: 26
121427038 TAAGCCCTCC
121427048 CCCAAAAAAAAAAAGAAAAAACCTAA
1 CCCAAAAAAAAAAAGAAAAAACCTAA
121427074 CCC-AAAAAAAAAAGAAAAAACCTAA
1 CCCAAAAAAAAAAAGAAAAAACCTAA
*
121427099 CCCAAAAAAAGAAAA-AGAAAAACCCAA
1 CCCAAAAAAA-AAAAGA-AAAAACCTAA
121427126 CCC
1 CCC
121427129 CCCCCCAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
25 25 0.49
26 10 0.20
27 16 0.31
ACGTcount: A:0.69, C:0.23, G:0.05, T:0.02
Consensus pattern (26 bp):
CCCAAAAAAAAAAAGAAAAAACCTAA
Found at i:121427705 original size:15 final size:15
Alignment explanation
Indices: 121427685--121427726 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
121427675 TGCCATTAGT
121427685 TATATATTTCTTATG
1 TATATATTTCTTATG
121427700 TATATATTTCTTATG
1 TATATATTTCTTATG
121427715 TATATA-TTCTTA
1 TATATATTTCTTA
121427727 AATACTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.60
Consensus pattern (15 bp):
TATATATTTCTTATG
Found at i:121427740 original size:2 final size:2
Alignment explanation
Indices: 121427735--121427759 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121427725 TAAATACTAT
121427735 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
121427760 TTTAAATACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121427867 original size:2 final size:2
Alignment explanation
Indices: 121427855--121427884 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
121427845 TTTTATGTAC
*
121427855 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121427885 TTGTACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121427935 original size:14 final size:15
Alignment explanation
Indices: 121427916--121427944 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
121427906 ATTATTGTTG
121427916 TATA-TTTTTATGTA
1 TATATTTTTTATGTA
121427930 TATATTTTTTATGTA
1 TATATTTTTTATGTA
121427945 CGTTTCCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:121428019 original size:2 final size:2
Alignment explanation
Indices: 121428012--121428039 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
121428002 TATTATATGC
121428012 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121428040 GTATTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121430131 original size:24 final size:24
Alignment explanation
Indices: 121430103--121430152 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
121430093 GTTTTTATTG
121430103 ATGGAATAATTTTTAGAACTAATT
1 ATGGAATAATTTTTAGAACTAATT
*
121430127 ATGGAATAATTTTTAGAATTAATT
1 ATGGAATAATTTTTAGAACTAATT
121430151 AT
1 AT
121430153 CTTTATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (24 bp):
ATGGAATAATTTTTAGAACTAATT
Found at i:121430489 original size:21 final size:22
Alignment explanation
Indices: 121430465--121430544 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 22
121430455 AAATATTAAA
121430465 ACCCTAAACTCTAAACT-CAAG
1 ACCCTAAACTCTAAACTCCAAG
* * *
121430486 ACCCTATAC-CCAAAATCCAAG
1 ACCCTAAACTCTAAACTCCAAG
* *
121430507 ACCATAAACTCTTAAAC-CCAAT
1 ACCCTAAACTC-TAAACTCCAAG
*
121430529 ACCATAAA-TCCTAAAC
1 ACCCTAAACT-CTAAAC
121430545 CTAATATCCT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
20 5 0.11
21 25 0.53
22 14 0.30
23 3 0.06
ACGTcount: A:0.45, C:0.34, G:0.03, T:0.19
Consensus pattern (22 bp):
ACCCTAAACTCTAAACTCCAAG
Found at i:121430545 original size:21 final size:22
Alignment explanation
Indices: 121430502--121430550 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
121430492 TACCCAAAAT
* *
121430502 CCAAGACCATAAACTCTTAAAC
1 CCAATACCATAAACTCCTAAAC
121430524 CCAATACCATAAA-TCCTAAAC
1 CCAATACCATAAACTCCTAAAC
*
121430545 CTAATA
1 CCAATA
121430551 TCCTAATCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (22 bp):
CCAATACCATAAACTCCTAAAC
Found at i:121434505 original size:15 final size:15
Alignment explanation
Indices: 121434485--121434523 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
121434475 ACAAAACTTG
121434485 AAAAATAAT-TAACCT
1 AAAAATAATCTAA-CT
121434500 AAAAATAATCTAACT
1 AAAAATAATCTAACT
121434515 AGAAAATAA
1 A-AAAATAA
121434524 ACATTAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.64, C:0.10, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAAATAATCTAACT
Found at i:121437473 original size:13 final size:13
Alignment explanation
Indices: 121437455--121437479 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121437445 GAGAATGAAA
121437455 ATCGACAACCAGC
1 ATCGACAACCAGC
121437468 ATCGACAACCAG
1 ATCGACAACCAG
121437480 TAGCAAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.36, G:0.16, T:0.08
Consensus pattern (13 bp):
ATCGACAACCAGC
Found at i:121442105 original size:2 final size:2
Alignment explanation
Indices: 121442098--121442133 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
121442088 ATACAACTTA
* *
121442098 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121442134 GAGAAGCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:121446469 original size:20 final size:20
Alignment explanation
Indices: 121446437--121446474 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
121446427 ATTTTATTTA
*
121446437 AATTTTTTCTTTGTTGTTTG
1 AATTTTTTCTTTGGTGTTTG
121446457 AATTTCTTT-TTTGGTGTT
1 AATTT-TTTCTTTGGTGTT
121446475 AGATGAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.11, C:0.05, G:0.16, T:0.68
Consensus pattern (20 bp):
AATTTTTTCTTTGGTGTTTG
Found at i:121461502 original size:32 final size:32
Alignment explanation
Indices: 121461461--121461521 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
121461451 CAAATTTAGC
121461461 TATACATTCAATTTCTAGGAAGAGAACTTGTA
1 TATACATTCAATTTCTAGGAAGAGAACTTGTA
121461493 TATACATTCAATTTCTAGGAAGAGAACTT
1 TATACATTCAATTTCTAGGAAGAGAACTT
121461522 TACTTGTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (32 bp):
TATACATTCAATTTCTAGGAAGAGAACTTGTA
Found at i:121465032 original size:21 final size:22
Alignment explanation
Indices: 121465007--121465065 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
121464997 AGTTTTTGCC
*
121465007 TTTTGGGTCAATT-ACATCAAT
1 TTTTGAGTCAATTGACATCAAT
*
121465028 TTTTGAGTCAATTGATATCAAT
1 TTTTGAGTCAATTGACATCAAT
121465050 TTTTCGAGTCAATTGA
1 TTTT-GAGTCAATTGA
121465066 TTCAATCACT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 12 0.35
22 11 0.32
23 11 0.32
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (22 bp):
TTTTGAGTCAATTGACATCAAT
Found at i:121465058 original size:23 final size:22
Alignment explanation
Indices: 121465007--121465071 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
121464997 AGTTTTTGCC
* *
121465007 TTTTGGGTCAATT-ACATCAAT
1 TTTTGAGTCAATTGATATCAAT
121465028 TTTTGAGTCAATTGATATCAAT
1 TTTTGAGTCAATTGATATCAAT
121465050 TTTTCGAGTCAATTGAT-TCAAT
1 TTTT-GAGTCAATTGATATCAAT
121465072 CACTTTTGGG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
21 12 0.30
22 16 0.40
23 12 0.30
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (22 bp):
TTTTGAGTCAATTGATATCAAT
Found at i:121467252 original size:6 final size:6
Alignment explanation
Indices: 121467243--121467276 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
121467233 TGTGTCATTT
121467243 TCATGG TCATGG TCATGG TCATGG TCATGG TCAT
1 TCATGG TCATGG TCATGG TCATGG TCATGG TCAT
121467277 TAATGACAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (6 bp):
TCATGG
Found at i:121470435 original size:20 final size:19
Alignment explanation
Indices: 121470392--121470438 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
121470382 CACTTTATTT
121470392 TATTT-TATTTAATAATAG
1 TATTTATATTTAATAATAG
121470410 TAATTTATATTTAATTAATTA-
1 T-ATTTATATTTAA-TAA-TAG
121470431 TATTTATA
1 TATTTATA
121470439 ACACTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.04
19 4 0.16
20 14 0.56
21 4 0.16
22 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTTATATTTAATAATAG
Found at i:121477351 original size:14 final size:14
Alignment explanation
Indices: 121477332--121477369 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
121477322 CTTGTTTGAT
121477332 TATATAATTATATA
1 TATATAATTATATA
*
121477346 TATATATTTATATA
1 TATATAATTATATA
121477360 TATATAATTA
1 TATATAATTA
121477370 AAATATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATATAATTATATA
Found at i:121487894 original size:5 final size:5
Alignment explanation
Indices: 121487884--121487910 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
121487874 TATATGATTA
121487884 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
121487911 TTATGCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:121488404 original size:13 final size:13
Alignment explanation
Indices: 121488386--121488412 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
121488376 AAATTGAAGT
121488386 TTATAGTATTTTA
1 TTATAGTATTTTA
121488399 TTATAGTATTTTA
1 TTATAGTATTTTA
121488412 T
1 T
121488413 CTTACTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATAGTATTTTA
Found at i:121492398 original size:15 final size:15
Alignment explanation
Indices: 121492378--121492409 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
121492368 GAACCTCGAA
121492378 TATTTTTATTTATTT
1 TATTTTTATTTATTT
*
121492393 TATTTTTATTTTTTT
1 TATTTTTATTTATTT
121492408 TA
1 TA
121492410 CCATCGACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (15 bp):
TATTTTTATTTATTT
Found at i:121494946 original size:46 final size:46
Alignment explanation
Indices: 121494884--121495059 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
121494874 TATTTAGGTA
*
121494884 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
121494930 TTCGAACTAGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
121494975 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
121495023 CCCGAGCTCA-TTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCT-AGTTGAGTTGAGTCCGAGTTCACTTATGG
121495060 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:121495042 original size:93 final size:93
Alignment explanation
Indices: 121494878--121495051 Score: 278
Period size: 93 Copynumber: 1.9 Consensus size: 93
121494868 CTGGAATATT
* * **
121494878 TAGGTATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTAGTTG
1 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAGTTG
121494943 AGTTGAGTCCGAGTTCGTGAGATGTAAC
66 AGTTGAGTCCGAGTTCGTGAGATGTAAC
* *
121494971 TAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCA-TT
1 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACT-AGTT
121495035 GAGTTGAGTCCGAGTTC
65 GAGTTGAGTCCGAGTTC
121495052 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 73 0.99
94 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAGTTG
AGTTGAGTCCGAGTTCGTGAGATGTAAC
Found at i:121497917 original size:42 final size:46
Alignment explanation
Indices: 121497854--121498065 Score: 152
Period size: 49 Copynumber: 4.6 Consensus size: 46
121497844 CTTCGTTTAC
** *
121497854 TCGATGTCATAGTTCAACTATGGTCTTACAC-AT-C-T-TCATATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCATATA
121497896 TCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCATATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC--AAT-ACATATCATATA
* * *
121497945 TCGACGCCATAGCCCAGCTATGGTCTTACACGAATCACATATC-T-CA
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC-AAT-ACATATCATATA
* * * * * *
121497991 -CTGATGCCATATCCCAGATATGGTCTTATACAGTAGCATAT-ATCACA
1 TC-GATGTCATAGCCCAGCTATGGTCTTACACAATA-CATATCAT-ATA
* * * *
121498038 CCGATGCCATATCCCAGATATGGTCTTA
1 TCGATGTCATAGCCCAGCTATGGTCTTA
121498066 TACAGTAGCA
Statistics
Matches: 145, Mismatches: 12, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
42 28 0.19
44 1 0.01
45 11 0.08
46 26 0.18
47 30 0.21
48 13 0.09
49 36 0.25
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (46 bp):
TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCATATA
Found at i:121497956 original size:49 final size:48
Alignment explanation
Indices: 121497889--121497987 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 48
121497879 TTACACATCT
* *
121497889 TCATATATCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATA
1 TCATATATCGACGCCATAGCCCAGCTATGGTCTTACACG-AATCACATA
121497938 TCATATATCGACGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
1 TCATATATCGACGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
121497986 TC
1 TC
121497988 TCACTGATGC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 11 0.23
49 37 0.77
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (48 bp):
TCATATATCGACGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
Found at i:121498049 original size:47 final size:47
Alignment explanation
Indices: 121497950--121498115 Score: 253
Period size: 47 Copynumber: 3.6 Consensus size: 47
121497940 ATATATCGAC
* * * * * * *
121497950 GCCATAGCCCAGCTATGGTCTTACAC-GAATCACATATCTCACTGAT
1 GCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTGAT
*
121497996 GCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCGAT
1 GCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTGAT
121498043 GCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTGAT
1 GCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTGAT
121498090 GCCATATCCCAGATATGGTCTTATAC
1 GCCATATCCCAGATATGGTCTTATAC
121498116 GAAAATCACT
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
46 23 0.21
47 87 0.79
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (47 bp):
GCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTGAT
Found at i:121498169 original size:31 final size:31
Alignment explanation
Indices: 121498134--121498344 Score: 278
Period size: 31 Copynumber: 6.8 Consensus size: 31
121498124 CTTGTCACTT
*
121498134 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
121498165 GTAGCCGGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
121498196 GTAGTCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** * * *
121498227 GTAGCAAAAGCTACCACTTATCACTTATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
121498258 GCAACAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
121498289 GTAGCCGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
121498320 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
121498345 TGTCATTTGT
Statistics
Matches: 156, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 156 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:121499558 original size:35 final size:35
Alignment explanation
Indices: 121499513--121499679 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
121499503 TCCTCATTGA
* ** *
121499513 AATACTATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
121499548 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
121499588 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
121499623 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
121499658 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
121499680 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
35 86 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:121499598 original size:75 final size:73
Alignment explanation
Indices: 121499508--121499679 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
121499498 GGTTTTCCTC
* ** * * **
121499508 ATTGAAATACTATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
121499572 TCAGTATGG
65 TCAGTATGG
*
121499581 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
121499646 CTCAGTATGG
64 CTCAGTATGG
121499656 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
121499680 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:121502657 original size:8 final size:8
Alignment explanation
Indices: 121502644--121502675 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
121502634 TTATTAAGTA
121502644 AATTTTGC
1 AATTTTGC
121502652 AATTTTGC
1 AATTTTGC
121502660 AATTTTGC
1 AATTTTGC
121502668 AATTTTGC
1 AATTTTGC
121502676 CCTTAATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (8 bp):
AATTTTGC
Found at i:121504366 original size:20 final size:20
Alignment explanation
Indices: 121504344--121504406 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
121504334 AAAATTACAA
121504344 AAAAATT-AAAATAATTTTT
1 AAAAATTCAAAATAATTTTT
*
121504363 AAAATTTCAAAATTAATTTTT
1 AAAAATTCAAAA-TAATTTTT
* *
121504384 -AGAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTTTT
121504402 AAAAA
1 AAAAA
121504407 ATTCCAAATG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 5 0.14
19 10 0.28
20 13 0.36
21 8 0.22
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.40
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTT
Found at i:121504379 original size:21 final size:20
Alignment explanation
Indices: 121504345--121504395 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
121504335 AAATTACAAA
121504345 AAAATT-AAAA-TAATTTTT
1 AAAATTCAAAATTAATTTTT
121504363 AAAATTTCAAAATTAATTTTT
1 AAAA-TTCAAAATTAATTTTT
*
121504384 AGAATTCAAAAT
1 AAAATTCAAAAT
121504396 ATTTATAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 4 0.14
19 2 0.07
20 12 0.41
21 11 0.38
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (20 bp):
AAAATTCAAAATTAATTTTT
Found at i:121504486 original size:30 final size:30
Alignment explanation
Indices: 121504431--121504489 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
121504421 ATATTTTTAA
*
121504431 AAAATATAAAAAATTCTAAAGATAATTTTT
1 AAAATATAAAAAATTCTAAAAATAATTTTT
121504461 AAAAT-TAAAAAATT-TAAAATAATAATTTT
1 AAAATATAAAAAATTCT-AAA-AATAATTTT
121504490 GGGGCCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 12 0.46
30 13 0.50
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (30 bp):
AAAATATAAAAAATTCTAAAAATAATTTTT
Found at i:121504489 original size:29 final size:30
Alignment explanation
Indices: 121504399--121504483 Score: 86
Period size: 36 Copynumber: 2.7 Consensus size: 30
121504389 TCAAAATATT
*
121504399 TATAAAAAATTCCAAATGTTATATATTTTTAAAAAA
1 TATAAAAAATTCTAAA-G--ATA-ATTTTT--AAAA
121504435 TATAAAAAATTCTAAAGATAATTTTTAAAA
1 TATAAAAAATTCTAAAGATAATTTTTAAAA
121504465 T-TAAAAAATT-TAAA-ATAAT
1 TATAAAAAATTCTAAAGATAAT
121504484 AATTTTGGGG
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
27 5 0.10
28 4 0.08
29 9 0.19
30 5 0.10
32 6 0.12
33 3 0.06
35 1 0.02
36 15 0.31
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (30 bp):
TATAAAAAATTCTAAAGATAATTTTTAAAA
Found at i:121504579 original size:16 final size:16
Alignment explanation
Indices: 121504560--121504590 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
121504550 TTGAAAGAGT
121504560 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
121504576 TTTCAAATTTATATG
1 TTTCAAATATATATG
121504591 CTTTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:121506574 original size:18 final size:18
Alignment explanation
Indices: 121506526--121506581 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 18
121506516 TTTAAAATTA
*
121506526 AAAAATATAAATATTCTTTTT
1 AAAAATATAAA-A-T-TTATT
121506547 AAAAAT-TAAAATTTATT
1 AAAAATATAAAATTTATT
*
121506564 AAAAATATAAAATCTATT
1 AAAAATATAAAATTTATT
121506582 TTTTAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 10 0.31
18 11 0.34
19 1 0.03
20 4 0.12
21 6 0.19
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAATATAAAATTTATT
Found at i:121506829 original size:8 final size:8
Alignment explanation
Indices: 121506800--121506830 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
121506790 AATCTTTTTA
121506800 AAAAAT-T
1 AAAAATAT
121506807 AAAAATAT
1 AAAAATAT
121506815 AAAAATAT
1 AAAAATAT
121506823 AAAAATAT
1 AAAAATAT
121506831 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAAATAT
Found at i:121506846 original size:37 final size:39
Alignment explanation
Indices: 121506765--121506864 Score: 125
Period size: 36 Copynumber: 2.6 Consensus size: 39
121506755 TAATTAACTT
* *
121506765 TTTTAAAAATTTAAAAATTATAAAAAATCTTTTTAAAAA
1 TTTTAAAAATATAAAAATTATAAAAAATATTTTTAAAAA
*
121506804 -ATTAAAAATATAAAAA-TAT-AAAAATATTTTTAAAAA
1 TTTTAAAAATATAAAAATTATAAAAAATATTTTTAAAAA
*
121506840 TTTTAAAAAAATAATTAAATTATAA
1 TTTTAAAAATATAA--AAATTATAA
121506865 CATGTCATCT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
36 16 0.31
37 14 0.27
38 14 0.27
39 3 0.06
40 3 0.06
41 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (39 bp):
TTTTAAAAATATAAAAATTATAAAAAATATTTTTAAAAA
Found at i:121508082 original size:36 final size:38
Alignment explanation
Indices: 121508012--121508083 Score: 94
Period size: 36 Copynumber: 1.9 Consensus size: 38
121508002 TTTTTATTTT
* *
121508012 AATCTTTGTTTTTCGTTGGAAAATATTTTATTTAACTC
1 AATCTTTGCTTTTCGTTGGAAAATATTTGATTTAACTC
* *
121508050 AATCTTT-CTTTT-GTTGGCAAATATTTGGTTTAAC
1 AATCTTTGCTTTTCGTTGGAAAATATTTGATTTAAC
121508084 CGAACTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 19 0.63
37 4 0.13
38 7 0.23
ACGTcount: A:0.25, C:0.11, G:0.12, T:0.51
Consensus pattern (38 bp):
AATCTTTGCTTTTCGTTGGAAAATATTTGATTTAACTC
Found at i:121514778 original size:2 final size:2
Alignment explanation
Indices: 121514771--121514799 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121514761 CAATGGTCTT
121514771 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121514800 TATTGATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121515762 original size:6 final size:6
Alignment explanation
Indices: 121515751--121515776 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
121515741 ACCATCCTCT
121515751 TCTTCA TCTTCA TCTTCA TCTTCA TC
1 TCTTCA TCTTCA TCTTCA TCTTCA TC
121515777 GCTGTTATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTTCA
Found at i:121521102 original size:19 final size:20
Alignment explanation
Indices: 121521080--121521120 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
121521070 TTTATTTTAA
121521080 AATT-AAAAAAACTATTAGT
1 AATTAAAAAAAACTATTAGT
*
121521099 AATTAAAAAAAATTATTAGT
1 AATTAAAAAAAACTATTAGT
121521119 AA
1 AA
121521121 AGAGGCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (20 bp):
AATTAAAAAAAACTATTAGT
Found at i:121525279 original size:20 final size:20
Alignment explanation
Indices: 121525246--121525288 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
121525236 ATCAGTATTC
121525246 TTATCATGAATTTTAGGATT
1 TTATCATGAATTTTAGGATT
* * *
121525266 TTATCCTGAGTTTTAGTATT
1 TTATCATGAATTTTAGGATT
121525286 TTA
1 TTA
121525289 ATTTGGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.53
Consensus pattern (20 bp):
TTATCATGAATTTTAGGATT
Found at i:121527669 original size:18 final size:19
Alignment explanation
Indices: 121527637--121527675 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
121527627 TACACCTTCT
121527637 TTACTAATAATTTTTTTAA
1 TTACTAATAATTTTTTTAA
121527656 TTACTAAT-ATTTTTTTAA
1 TTACTAATAATTTTTTTAA
121527674 TT
1 TT
121527676 TTAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTACTAATAATTTTTTTAA
Found at i:121528080 original size:22 final size:21
Alignment explanation
Indices: 121528046--121528086 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
121528036 AAAATAAAAA
*
121528046 TAAAAATAATTTTCAAATTTT
1 TAAAAATAATTTTAAAATTTT
121528067 TAAAAATAATTTTTAAAATT
1 TAAAAATAA-TTTTAAAATT
121528087 CAAAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAAAATAATTTTAAAATTTT
Found at i:121528607 original size:29 final size:29
Alignment explanation
Indices: 121528563--121528634 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
121528553 CATTTAATTA
*
121528563 ATTTTTTAAAAATTTAT-ATTATTAAAAAT
1 ATTTTTTAAAATTTTATAATT-TTAAAAAT
*
121528592 ATTTTTTAATATTTTATAATTTTAAAAAT
1 ATTTTTTAAAATTTTATAATTTTAAAAAT
*
121528621 AATTTTTAAAATTT
1 ATTTTTTAAAATTT
121528635 AAAAATATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
ATTTTTTAAAATTTTATAATTTTAAAAAT
Found at i:121528635 original size:20 final size:20
Alignment explanation
Indices: 121528598--121528653 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
121528588 AAATATTTTT
*
121528598 TAATATTTTATAATTTTAAAAA
1 TAAT-TTTTA-AAATTTAAAAA
121528620 TAATTTTTAAAATTTAAAAA
1 TAATTTTTAAAATTTAAAAA
*
121528640 T-ATTTTTATAATTT
1 TAATTTTTAAAATTT
121528654 TTATGAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 12 0.38
20 11 0.34
21 5 0.16
22 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TAATTTTTAAAATTTAAAAA
Found at i:121528656 original size:21 final size:20
Alignment explanation
Indices: 121528599--121528654 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
121528589 AATATTTTTT
121528599 AATA-TTTTATAATTTTAAA
1 AATATTTTTATAATTTTAAA
*
121528618 AATAATTTTTA-AAATTTAAA
1 AAT-ATTTTTATAATTTTAAA
121528638 AATATTTTTATAATTTT
1 AATATTTTTATAATTTT
121528655 TATGAAGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 10 0.31
20 17 0.53
21 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATATTTTTATAATTTTAAA
Found at i:121532168 original size:19 final size:18
Alignment explanation
Indices: 121532141--121532185 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
121532131 AGGGGGTGTT
*
121532141 ATTATTAAATTTTAAAAA
1 ATTATTAAATGTTAAAAA
*
121532159 ATTAATTAAATGTTAAAAT
1 ATT-ATTAAATGTTAAAAA
121532178 ATTATTAA
1 ATTATTAA
121532186 CATGGTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTATTAAATGTTAAAAA
Found at i:121532176 original size:18 final size:19
Alignment explanation
Indices: 121532140--121532185 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
121532130 AAGGGGGTGT
*
121532140 TATTATTAAATTTTAAAAA
1 TATTATTAAATGTTAAAAA
121532159 -ATTAATTAAATGTT-AAAA
1 TATT-ATTAAATGTTAAAAA
121532177 TATTATTAA
1 TATTATTAA
121532186 CATGGTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
TATTATTAAATGTTAAAAA
Found at i:121545576 original size:15 final size:16
Alignment explanation
Indices: 121545558--121545587 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
121545548 TATATAATTA
121545558 TAATAAAA-AAATAAG
1 TAATAAAAGAAATAAG
121545573 TAATAAAAGAAATAA
1 TAATAAAAGAAATAA
121545588 AGAAAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (16 bp):
TAATAAAAGAAATAAG
Found at i:121545647 original size:15 final size:16
Alignment explanation
Indices: 121545622--121545651 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
121545612 AGAAGGAAAA
121545622 AAAGAAAGAAAAAGAG
1 AAAGAAAGAAAAAGAG
121545638 AAAG-AAGAAAAAGA
1 AAAGAAAGAAAAAGA
121545652 AAGAGAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAGAAAGAAAAAGAG
Found at i:121546440 original size:18 final size:20
Alignment explanation
Indices: 121546417--121546457 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
121546407 GAAGAGTTTA
*
121546417 TTTTGAT-GTTTTTA-ATAT
1 TTTTGATGGTTTATATATAT
121546435 TTTTGATGGTTTATATATAT
1 TTTTGATGGTTTATATATAT
121546455 TTT
1 TTT
121546458 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (20 bp):
TTTTGATGGTTTATATATAT
Found at i:121547653 original size:22 final size:23
Alignment explanation
Indices: 121547628--121547671 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
121547618 AATCAATCCA
121547628 ATTCA-ACATATTTT-TAAGATAG
1 ATTCATACAT-TTTTATAAGATAG
*
121547650 ATTCATGCATTTTTATAAGATA
1 ATTCATACATTTTTATAAGATA
121547672 ACTTCATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (23 bp):
ATTCATACATTTTTATAAGATAG
Found at i:121550791 original size:38 final size:39
Alignment explanation
Indices: 121550748--121550827 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 39
121550738 CATTTTTTTA
*
121550748 ATGTGGTACCTATATTATTTTTTTAATT-TATTTAATAT
1 ATGTGGTACCTATATTATTTTTTTAATTCAATTTAATAT
*
121550786 ATGTGGTACCTATATTATTTTTTTGATTCAATTTAATAT
1 ATGTGGTACCTATATTATTTTTTTAATTCAATTTAATAT
121550825 ATG
1 ATG
121550828 GATTTAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 27 0.69
39 12 0.31
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (39 bp):
ATGTGGTACCTATATTATTTTTTTAATTCAATTTAATAT
Found at i:121551047 original size:16 final size:17
Alignment explanation
Indices: 121551026--121551062 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
121551016 AACGAACCAC
121551026 ATATAT-CAC-CACACA
1 ATATATACACACACACA
121551041 TATATATACACACACACA
1 -ATATATACACACACACA
121551059 ATAT
1 ATAT
121551063 TTTTGAGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 7 0.37
18 6 0.32
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (17 bp):
ATATATACACACACACA
Found at i:121553597 original size:13 final size:13
Alignment explanation
Indices: 121553563--121553597 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
121553553 TGCTGTGAAA
*
121553563 AAGTACTTTTGAG
1 AAGTATTTTTGAG
121553576 AAGTATTTTTGAG
1 AAGTATTTTTGAG
*
121553589 AAGTGTTTT
1 AAGTATTTT
121553598 GGAAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.46
Consensus pattern (13 bp):
AAGTATTTTTGAG
Found at i:121553786 original size:28 final size:30
Alignment explanation
Indices: 121553755--121553820 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 30
121553745 ATTATAACTT
121553755 ATTTTTAATATTT-TAA-T-ATATAATATTA
1 ATTTTTAATATTTCTAAGTAAT-TAATATTA
*
121553783 ATTTTAAATATTTCTAAGTAATTAATATTA
1 ATTTTTAATATTTCTAAGTAATTAATATTA
121553813 ATTATTTA
1 ATT-TTTA
121553821 TTAAATTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 12 0.38
29 3 0.09
30 12 0.38
31 5 0.16
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (30 bp):
ATTTTTAATATTTCTAAGTAATTAATATTA
Found at i:121553811 original size:30 final size:28
Alignment explanation
Indices: 121553755--121553815 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
121553745 ATTATAACTT
*
121553755 ATTTTTAATATTTTAATATATAATATTA
1 ATTTTAAATATTTTAATATATAATATTA
121553783 ATTTTAAATATTTCTAAGTA-ATTAATATTA
1 ATTTTAAATATTT-TAA-TATA-TAATATTA
121553813 ATT
1 ATT
121553816 ATTTATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 12 0.41
29 4 0.14
30 13 0.45
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTTTAAATATTTTAATATATAATATTA
Found at i:121553877 original size:21 final size:19
Alignment explanation
Indices: 121553821--121553881 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
121553811 TAATTATTTA
121553821 TTAAATT-TAATTAGAATAT
1 TTAAATTATAATTA-AATAT
* *
121553840 ATAAATTATATTTAAATAT
1 TTAAATTATAATTAAATAT
121553859 TTAAATATAATAATTAAATAT
1 TTAAAT-T-ATAATTAAATAT
121553880 TT
1 TT
121553882 GTAATTAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 6 0.17
21 13 0.37
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTAAATAT
Found at i:121564792 original size:36 final size:36
Alignment explanation
Indices: 121564741--121564813 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
121564731 TGCTTCCAAC
*
121564741 TATGGCTGTACATGCATGTATTTTCCATTTATTACT
1 TATGGCTGTAAATGCATGTATTTTCCATTTATTACT
121564777 TATGGCTGTAAATGCATGTATTTTCCATTTATTACT
1 TATGGCTGTAAATGCATGTATTTTCCATTTATTACT
121564813 T
1 T
121564814 GAACAATGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.48
Consensus pattern (36 bp):
TATGGCTGTAAATGCATGTATTTTCCATTTATTACT
Found at i:121574047 original size:20 final size:20
Alignment explanation
Indices: 121574022--121574062 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
121574012 TTTTTGCTCC
121574022 TACTCTTTCTTCTAACAAGT
1 TACTCTTTCTTCTAACAAGT
121574042 TACTCTTTCTTCTAACAAGT
1 TACTCTTTCTTCTAACAAGT
121574062 T
1 T
121574063 CCATGTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.46
Consensus pattern (20 bp):
TACTCTTTCTTCTAACAAGT
Found at i:121577638 original size:32 final size:32
Alignment explanation
Indices: 121577597--121577661 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
121577587 TGTATGCATT
121577597 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
*
121577629 TTAGTATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
121577661 T
1 T
121577662 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:121585673 original size:25 final size:25
Alignment explanation
Indices: 121585623--121585673 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
121585613 TATTTAAAAT
* * *
121585623 ATTTAAAATTTTATAAAAACATTAA
1 ATTTAAAACTCTATAAAAACAATAA
*
121585648 ATTTAAAACTCTATAAAAATAATAA
1 ATTTAAAACTCTATAAAAACAATAA
121585673 A
1 A
121585674 AATTATAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (25 bp):
ATTTAAAACTCTATAAAAACAATAA
Found at i:121587992 original size:20 final size:20
Alignment explanation
Indices: 121587961--121588009 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
121587951 CATGTCTTTG
121587961 TCATATTATTTTTTTG---TA
1 TCATA-TATTTTTTTGTCCTA
121587979 TCATATATTTTTTTGTCCTA
1 TCATATATTTTTTTGTCCTA
121587999 TCATATATTTT
1 TCATATATTTT
121588010 GTTAACTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.36
18 5 0.18
20 13 0.46
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.63
Consensus pattern (20 bp):
TCATATATTTTTTTGTCCTA
Found at i:121588793 original size:131 final size:132
Alignment explanation
Indices: 121588546--121588796 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 132
121588536 TCATTCATTC
** *
121588546 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * **
121588611 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
121588676 TT
131 TT
121588678 AAAA-TTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
121588742 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCA
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCA
121588797 TTCATGTCTT
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
130 1 0.01
131 102 0.95
132 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:121588806 original size:131 final size:132
Alignment explanation
Indices: 121588546--121588827 Score: 379
Period size: 131 Copynumber: 2.1 Consensus size: 132
121588536 TCATTCATTC
* ** *
121588546 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * ** *
121588611 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
121588676 -T
131 CT
*
121588677 TAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
121588742 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCT
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCT
121588806 TCT
130 TCT
* *
121588809 AAAAATTATTTAAAACGAA
1 AAAAATTCTTCAAAACGAA
121588828 AGCTATATTC
Statistics
Matches: 130, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 112 0.86
132 17 0.13
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
CT
Found at i:121588859 original size:131 final size:131
Alignment explanation
Indices: 121588554--121588901 Score: 348
Period size: 131 Copynumber: 2.7 Consensus size: 131
121588544 TCAAAAGTTC
*
121588554 TTCAAAACGAAGACGAGATTCG-ATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGAACGTTT-GCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * ** * *
121588618 GCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTTTTAAAAT
65 GCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAAT
*
121588683 TC
130 TA
*
121588685 TTCAAAACGAAGACGAGATTCGATAC-TTAGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGA-ACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * * * * *
121588749 GCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCTTCTAAAA
65 GCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT-TAAAA
121588813 ATTA
128 ATTA
* * * * * * * * *
121588817 TTTAAAACGAA-AGCTATATTCG-GCGTTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGC
1 TTCAAAACGAAGA-CGAGATTCGAACGTTTG-CAATTCGCGGAATCGTGCCCTAACGTGTTGGGT
** * *
121588879 TGTGATTTCTCGTTTGTTCAAAA
64 TGCAATTTCGCGTTTGCTCAAAA
121588902 CGATCGAATA
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
130 2 0.01
131 142 0.79
132 34 0.19
133 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACGAGATTCGAACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTG
CAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAATT
A
Found at i:121600895 original size:44 final size:44
Alignment explanation
Indices: 121600781--121601130 Score: 434
Period size: 44 Copynumber: 7.9 Consensus size: 44
121600771 GATCGATCTC
* *
121600781 ATTTGGCATCTCTATATTGGCGGAGAACAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
121600825 A-TTGGCATCTCTGTATTGGCGAAGAGCAGATCGAAGATCA-CAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGAT-AGCAG
* **
121600868 ATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAAGATCTCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
121600912 GTTTGACATCCCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
121600956 ATTTGGCATCTCTGTATTGATTGGGGAGAGACAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTG---GCGGAGAG-CAGATCGAAGATAGCAG
* * * * *
121601004 ATTTGGCATCTTTGTATTGGCGGGAGAGCGGATCGAAAATAACAA
1 ATTTGGCATCTCTGTATTGGC-GGAGAGCAGATCGAAGATAGCAG
* *
121601049 ATTTAGCATCTCTGTATTGGCGGAGAACAGATCGAAGATAGCAG
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * ** *
121601093 ATTTGGCGTCTCTGTATTGACAAAGAGCAAATCGAAGA
1 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGA
121601131 CGACGAATCT
Statistics
Matches: 262, Mismatches: 36, Indels: 16
0.83 0.11 0.05
Matches are distributed among these distances:
43 38 0.15
44 143 0.55
45 33 0.13
46 6 0.02
47 7 0.03
48 35 0.13
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (44 bp):
ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
Found at i:121601084 original size:137 final size:132
Alignment explanation
Indices: 121600781--121601130 Score: 456
Period size: 137 Copynumber: 2.6 Consensus size: 132
121600771 GATCGATCTC
*
121600781 ATTTGGCATCTCTATATTGGCGGAGAACAGATCGAAGATAGCAGA-TTGGCATCTCTGTATTG-G
1 ATTT-GCATCTCTGTATTGGCGGAGAACAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGAG
* **
121600844 CGAAGAGCAGATCGAAGATCACAGATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAAGATCT
65 CGAAGAGCAGATCGAAGATCACAGATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAAAATAA
*
121600909 CAG
130 CAA
* * *
121600912 GTTTGACATCCCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGAT
1 ATTTG-CATCTCTGTATTGGCGGAGAACAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGA-
* * * * *
121600977 TGGGGAGAGACAGATCGAAGAT-AGCAGATTTGGCATCTTTGTATTGGCGGGAGAGCGGATCGAA
64 -GCGAAGAG-CAGATCGAAGATCA-CAGATTTGGCATCTCTGTATTGAC-GGAGAGCAGATCGAA
121601041 AATAACAA
125 AATAACAA
*
121601049 ATTTAGCATCTCTGTATTGGCGGAGAACAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGA-
1 ATTT-GCATCTCTGTATTGGCGGAGAACAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGAG
* *
121601113 CAAAGAGCAAATCGAAGA
65 CGAAGAGCAGATCGAAGA
121601131 CGACGAATCT
Statistics
Matches: 189, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
130 1 0.01
131 39 0.21
132 17 0.09
133 10 0.05
134 4 0.02
135 7 0.04
136 34 0.18
137 76 0.40
138 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (132 bp):
ATTTGCATCTCTGTATTGGCGGAGAACAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGAGC
GAAGAGCAGATCGAAGATCACAGATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAAAATAAC
AA
Found at i:121601110 original size:181 final size:175
Alignment explanation
Indices: 121600781--121601130 Score: 459
Period size: 181 Copynumber: 2.0 Consensus size: 175
121600771 GATCGATCTC
121600781 ATTTGGCATCTCTATATTGGCGGAGAACAGATCGAAGATAGCAGATTGGCATCTCTGTATTGGCG
1 ATTTGGCATCTCTATATTGGCGGAGAACAGATCGAAGATAGCAGATTGGCATCTCTGTATTGGCG
* * * * * **
121600846 AAGAGCAGATCGAAGATCACAGATTTGGCATCTCTGTATTGACGGAGAGCAGATCGAAGATCTCA
66 AAGAGCAGATCGAAAATAACAAATTTAGCATCTCTGTATTGACGGAGAACAGATCGAAGATAGCA
* * ** *
121600911 GGTTTGACATCCCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
131 GATTTGACATCCCTGTATTGACAAAGAGCAAATCGAAGATAGCAG
*
121600956 ATTTGGCATCTCTGTATTGATTGG-GGAGAGACAGATCGAAGATAGCAGATTTGGCATCTTTGTA
1 ATTTGGCATCTC--TA-T-ATTGGCGGAGA-ACAGATCGAAGATAGCAGA-TTGGCATCTCTGTA
* * *
121601020 TTGGCGGGAGAGCGGATCGAAAATAACAAATTTAGCATCTCTGTATTGGCGGAGAACAGATCGAA
60 TTGGC-GAAGAGCAGATCGAAAATAACAAATTTAGCATCTCTGTATTGACGGAGAACAGATCGAA
* * *
121601085 GATAGCAGATTTGGCGTCTCTGTATTGACAAAGAGCAAATCGAAGA
124 GATAGCAGATTTGACATCCCTGTATTGACAAAGAGCAAATCGAAGA
121601131 CGACGAATCT
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
175 12 0.08
177 2 0.01
178 6 0.04
179 24 0.16
180 18 0.12
181 87 0.58
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (175 bp):
ATTTGGCATCTCTATATTGGCGGAGAACAGATCGAAGATAGCAGATTGGCATCTCTGTATTGGCG
AAGAGCAGATCGAAAATAACAAATTTAGCATCTCTGTATTGACGGAGAACAGATCGAAGATAGCA
GATTTGACATCCCTGTATTGACAAAGAGCAAATCGAAGATAGCAG
Found at i:121603986 original size:5 final size:5
Alignment explanation
Indices: 121603968--121604003 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
121603958 TTTCTTTTAT
121603968 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
121604004 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:121605438 original size:46 final size:47
Alignment explanation
Indices: 121605378--121605605 Score: 322
Period size: 46 Copynumber: 5.0 Consensus size: 47
121605368 TTTGACATGA
* * * * * *
121605378 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*** *
121605424 TGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
121605470 TGCCATGGTGTCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
121605516 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
121605562 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
121605606 AGAGCACACT
Statistics
Matches: 166, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 7 0.04
46 156 0.94
47 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:121607756 original size:11 final size:11
Alignment explanation
Indices: 121607740--121607791 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
121607730 TATACTAAAT
121607740 AAATAATAATA
1 AAATAATAATA
*
121607751 AAATAAT-ATT
1 AAATAATAATA
* *
121607761 AAATATCTCATA
1 AAATA-ATAATA
*
121607773 AAATATTAATA
1 AAATAATAATA
121607784 AAATAATA
1 AAATAATA
121607792 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:121609986 original size:20 final size:20
Alignment explanation
Indices: 121609955--121610003 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
121609945 CATGTCTTTG
121609955 TCATATTATTTTTTTG---TA
1 TCATA-TATTTTTTTGTCCTA
121609973 TCATATATTTTTTTGTCCTA
1 TCATATATTTTTTTGTCCTA
121609993 TCATATATTTT
1 TCATATATTTT
121610004 GTTAACTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.36
18 5 0.18
20 13 0.46
ACGTcount: A:0.22, C:0.10, G:0.04, T:0.63
Consensus pattern (20 bp):
TCATATATTTTTTTGTCCTA
Found at i:121610787 original size:131 final size:132
Alignment explanation
Indices: 121610540--121610790 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 132
121610530 TCATTCATTC
** *
121610540 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * **
121610605 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
121610670 TT
131 TT
121610672 AAAA-TTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
121610736 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCA
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCA
121610791 TTCATGTCTT
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
130 1 0.01
131 102 0.95
132 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:121610800 original size:131 final size:132
Alignment explanation
Indices: 121610540--121610821 Score: 379
Period size: 131 Copynumber: 2.1 Consensus size: 132
121610530 TCATTCATTC
* ** *
121610540 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * ** *
121610605 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
121610670 -T
131 CT
*
121610671 TAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
121610736 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCT
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCT
121610800 TCT
130 TCT
* *
121610803 AAAAATTATTTAAAACGAA
1 AAAAATTCTTCAAAACGAA
121610822 AGCTATATTC
Statistics
Matches: 130, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 112 0.86
132 17 0.13
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
CT
Found at i:121610853 original size:131 final size:131
Alignment explanation
Indices: 121610548--121610895 Score: 348
Period size: 131 Copynumber: 2.7 Consensus size: 131
121610538 TCAAAAGTTC
*
121610548 TTCAAAACGAAGACGAGATTCG-ATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGAACGTTT-GCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * ** * *
121610612 GCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTTTTAAAAT
65 GCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAAT
*
121610677 TC
130 TA
*
121610679 TTCAAAACGAAGACGAGATTCGATAC-TTAGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGA-ACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * * * * *
121610743 GCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCTTCTAAAA
65 GCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT-TAAAA
121610807 ATTA
128 ATTA
* * * * * * * * *
121610811 TTTAAAACGAA-AGCTATATTCG-GCGTTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGC
1 TTCAAAACGAAGA-CGAGATTCGAACGTTTG-CAATTCGCGGAATCGTGCCCTAACGTGTTGGGT
** * *
121610873 TGTGATTTCTCGTTTGTTCAAAA
64 TGCAATTTCGCGTTTGCTCAAAA
121610896 CGATCGAATA
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
130 2 0.01
131 142 0.79
132 34 0.19
133 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACGAGATTCGAACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTG
CAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAATT
A
Found at i:121613168 original size:30 final size:30
Alignment explanation
Indices: 121613124--121613186 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
121613114 ACTTAATAAG
121613124 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* * *
121613154 CAAATGTCTTTAAAATAATAGCAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
121613184 CAA
1 CAA
121613187 TAAGATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:121614139 original size:18 final size:17
Alignment explanation
Indices: 121614101--121614139 Score: 62
Period size: 16 Copynumber: 2.3 Consensus size: 17
121614091 AAAAAAAAAT
121614101 TAATTATATTTTTTTCA
1 TAATTATATTTTTTTCA
121614118 -AATTATATTTTTTGTCA
1 TAATTATATTTTTT-TCA
121614135 TAATT
1 TAATT
121614140 TAAGCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 13 0.65
17 3 0.15
18 4 0.20
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (17 bp):
TAATTATATTTTTTTCA
Found at i:121628634 original size:22 final size:22
Alignment explanation
Indices: 121628609--121628653 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
121628599 TGCAATTAAA
*
121628609 CTACCAATAATTTGCAG-ACAAG
1 CTACCAATAAGTTGC-GCACAAG
*
121628631 CTACCAGTAAGTTGCGCACAAG
1 CTACCAATAAGTTGCGCACAAG
121628653 C
1 C
121628654 CCAAAACCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.20
Consensus pattern (22 bp):
CTACCAATAAGTTGCGCACAAG
Found at i:121630531 original size:43 final size:43
Alignment explanation
Indices: 121630484--121630599 Score: 166
Period size: 43 Copynumber: 2.7 Consensus size: 43
121630474 TATCTCATAT
121630484 CGATGCCAATAG-CCCAG-CTATGGTCTTACACAAAATCAC-ATGA
1 CGATGCCAAT-GTCCCAGAC-ATGGTCTTACACAAAATCACAAT-A
*
121630527 CGATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACACAAAATCACAATA
*
121630570 CAATGCCAATGTCCCAGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGGTCTTACA
121630600 TGGAATCTCA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
42 1 0.01
43 64 0.94
44 3 0.04
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACAAAATCACAATA
Found at i:121635140 original size:52 final size:49
Alignment explanation
Indices: 121634957--121635162 Score: 199
Period size: 47 Copynumber: 4.2 Consensus size: 49
121634947 TACACATAGT
* ** * *
121634957 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAA
* * * *
121635005 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAA
* *
121635052 CACATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAA
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAA
* *
121635099 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAA
*
121635151 TCACATTTCACA
1 -CACATATCACA
121635163 TGCTGCCATG
Statistics
Matches: 132, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
46 25 0.19
47 53 0.40
48 11 0.08
49 1 0.01
52 32 0.24
53 10 0.08
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAA
Found at i:121637568 original size:10 final size:10
Alignment explanation
Indices: 121637553--121637582 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
121637543 AAATCTAGAG
121637553 TTTTCTTCAT
1 TTTTCTTCAT
121637563 TTTTCTTCAT
1 TTTTCTTCAT
121637573 TTTTCTTCAT
1 TTTTCTTCAT
121637583 CTTCATCAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTCTTCAT
Found at i:121638533 original size:53 final size:53
Alignment explanation
Indices: 121638408--121638595 Score: 187
Period size: 52 Copynumber: 3.7 Consensus size: 53
121638398 ATAAGTGCTC
* * ** **
121638408 CCGTTTAAGACCACAGCTGGGCTATGGCATCGGTGCAATGTGAT-ATGTG-TT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATGATGTGATT
121638459 CCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATGATGTGATT
1 -CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATGATGTGATT
* *
121638513 CCGTATAAGACCATATCTGGGATATGGCAT---TG-G-CATG-TGATGTGA-T
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATGATGTGATT
* * * * *
121638559 CCGTGTAAGAACATAGCAGGACTATGGCTTCGGTGTG
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
121638596 TGATATGTGA
Statistics
Matches: 115, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
46 24 0.21
47 8 0.07
48 4 0.03
49 3 0.03
50 3 0.03
52 38 0.33
53 33 0.29
54 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATGATGTGATT
Found at i:121638568 original size:46 final size:51
Alignment explanation
Indices: 121638408--121638575 Score: 147
Period size: 53 Copynumber: 3.3 Consensus size: 51
121638398 ATAAGTGCTC
* * *
121638408 CCGTTTAAGACCACAGCTGGGCTATGGCATCG-GTG-CAATG-TGATATGTG-TT
1 CCGTATAAGACCATAGCTGGGATATGGCAT-GTGTGAC-ATGATG--ATGTGATT
*
121638459 CCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATGATGTGATT
1 -CCGTATAAGACCATAGCTGGGATATGGCAT--GTGTGACATGATGATGTGATT
*
121638513 CCGTATAAGACCATATCTGGGATATGGCAT-TG-G-CATG-TGATGTGA-T
1 CCGTATAAGACCATAGCTGGGATATGGCATGTGTGACATGATGATGTGATT
* *
121638559 CCGTGTAAGAACATAGC
1 CCGTATAAGACCATAGC
121638576 AGGACTATGG
Statistics
Matches: 103, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
46 15 0.15
47 8 0.08
48 4 0.04
49 1 0.01
50 2 0.02
52 28 0.27
53 34 0.33
54 8 0.08
55 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (51 bp):
CCGTATAAGACCATAGCTGGGATATGGCATGTGTGACATGATGATGTGATT
Found at i:121644140 original size:45 final size:45
Alignment explanation
Indices: 121644076--121644248 Score: 287
Period size: 45 Copynumber: 3.9 Consensus size: 45
121644066 TGTGCAGTAC
121644076 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
121644121 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
121644166 TATTCGGGCCTTTGAGTCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
121644211 TATTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
121644249 ATGAATTCGG
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
43 12 0.10
44 13 0.11
45 95 0.79
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:121649073 original size:6 final size:6
Alignment explanation
Indices: 121649062--121649094 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
121649052 ATCCCCTTCT
*
121649062 AGAGGA AGAGGA AGAGGA AGAGGG AGAGGA AGA
1 AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGA
121649095 TGATTTGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (6 bp):
AGAGGA
Found at i:121652747 original size:25 final size:27
Alignment explanation
Indices: 121652703--121652754 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
121652693 ATACGCAAAG
121652703 ATTTAAAATAAATCATATATGGAAGAA
1 ATTTAAAATAAATCATATATGGAAGAA
* *
121652730 ATTTAAAATGAAT-A-ATATGTAAGAA
1 ATTTAAAATAAATCATATATGGAAGAA
121652755 TAATTTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 10 0.43
26 1 0.04
27 12 0.52
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.31
Consensus pattern (27 bp):
ATTTAAAATAAATCATATATGGAAGAA
Found at i:121652759 original size:27 final size:25
Alignment explanation
Indices: 121652703--121652784 Score: 67
Period size: 29 Copynumber: 3.0 Consensus size: 25
121652693 ATACGCAAAG
*
121652703 ATTTAAAATAAATCATATATGGAAG-AA
1 ATTTAAAAT-AAT-A-ATATGTAAGAAA
121652730 ATTTAAAATGAATAATATGTAAGAATA
1 ATTTAAAAT-AATAATATGTAAGAA-A
*
121652757 ATTTTGAAAATATATAATATATAAGAAA
1 A-TTT-AAAATA-ATAATATGTAAGAAA
121652785 TATGTATAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
25 8 0.17
26 2 0.04
27 14 0.30
28 5 0.11
29 18 0.38
ACGTcount: A:0.56, C:0.01, G:0.10, T:0.33
Consensus pattern (25 bp):
ATTTAAAATAATAATATGTAAGAAA
Found at i:121653042 original size:25 final size:27
Alignment explanation
Indices: 121652983--121653044 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
121652973 TAATAAATAA
*
121652983 TTTAAAATGAATGACGCATAAGGCGAGT
1 TTTAAAATGAATGACG-ATAAGGCGAAT
*
121653011 TTATAAAATGAATGATG-TAAGG-GAAT
1 TT-TAAAATGAATGACGATAAGGCGAAT
121653037 TTTAAAAT
1 TTTAAAAT
121653045 CTATATTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 6 0.19
26 5 0.16
27 5 0.16
28 2 0.06
29 13 0.42
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (27 bp):
TTTAAAATGAATGACGATAAGGCGAAT
Found at i:121653230 original size:26 final size:26
Alignment explanation
Indices: 121653178--121653226 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
121653168 TAAACATAAC
*
121653178 TTTAAAATAAATAATATATAAGTTAA
1 TTTAAAATAAATAATATAGAAGTTAA
121653204 TTTAAAAT-AATAA-ATAAGAAGTT
1 TTTAAAATAAATAATAT-AGAAGTT
121653227 TAATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 11 0.52
26 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (26 bp):
TTTAAAATAAATAATATAGAAGTTAA
Found at i:121656554 original size:27 final size:27
Alignment explanation
Indices: 121656514--121656654 Score: 153
Period size: 27 Copynumber: 5.2 Consensus size: 27
121656504 AGGAAGCGTC
*
121656514 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
121656541 CTGGAGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
121656568 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* * *
121656595 CTAGTGGCTCTGCTAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
121656622 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
121656649 CTGGTG
1 CTGGTG
121656655 ACTTCGTCAC
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
26 10 0.11
27 80 0.86
28 3 0.03
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:121656604 original size:54 final size:54
Alignment explanation
Indices: 121656514--121656644 Score: 201
Period size: 54 Copynumber: 2.4 Consensus size: 54
121656504 AGGAAGCGTC
* *
121656514 CTGGTGGCTATGCCACAATTATCTGATCTGGAGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTAGAGGCTCTGCCACATATATCTGTT
* *
121656568 CTGGTGGCTATGCCACAATTATCTAATCTAGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTAGAGGCTCTGCCACATATATCTGTT
* *
121656622 CTGGTGGCTCTACCACAA-TATCT
1 CTGGTGGCTATGCCACAATTATCT
121656645 GTATCTGGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 5 0.07
54 66 0.93
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTAGAGGCTCTGCCACATATATCTGTT
Found at i:121665690 original size:13 final size:13
Alignment explanation
Indices: 121665672--121665708 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
121665662 CAAATTAATA
121665672 AATATTTTTATAG
1 AATATTTTTATAG
121665685 AATATTTTTATAG
1 AATATTTTTATAG
121665698 AATATTTTTAT
1 AATATTTTTAT
121665709 CTTTTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (13 bp):
AATATTTTTATAG
Found at i:121673055 original size:22 final size:23
Alignment explanation
Indices: 121673030--121673075 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
121673020 CAACCAAATC
121673030 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
121673052 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
121673075 A
1 A
121673076 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:121673081 original size:23 final size:23
Alignment explanation
Indices: 121673037--121673081 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
121673027 ATCAATTCAA
*
121673037 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
121673060 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
121673082 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:121693443 original size:27 final size:28
Alignment explanation
Indices: 121693399--121693452 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
121693389 TTTTTAAACC
121693399 TTTTTTAAAATTTCTTTTACAGTTTTTA
1 TTTTTTAAAATTTCTTTTACAGTTTTTA
* * *
121693427 TTTTTTTATATTT-TTTTACATTTTTT
1 TTTTTTAAAATTTCTTTTACAGTTTTT
121693453 GTAATAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (28 bp):
TTTTTTAAAATTTCTTTTACAGTTTTTA
Found at i:121693560 original size:22 final size:21
Alignment explanation
Indices: 121693527--121693573 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
121693517 ATATTCTCTT
*
121693527 TTTCTAGATTTTATATATATA
1 TTTCTAAATTTTATATATATA
*
121693548 TTTCTAAATTTTTATATATTTA
1 TTTCTAAA-TTTTATATATATA
121693570 TTTC
1 TTTC
121693574 CATTTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTCTAAATTTTATATATATA
Found at i:121693581 original size:22 final size:21
Alignment explanation
Indices: 121693535--121693585 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
121693525 TTTTTCTAGA
*
121693535 TTTTATATATATATTTCTAAAT
1 TTTTATATATATATTTC-CAAT
* *
121693557 TTTTATATATTTATTTCCATT
1 TTTTATATATATATTTCCAAT
121693578 TTTTATAT
1 TTTTATAT
121693586 TTTTTAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTATATATATATTTCCAAT
Found at i:121693816 original size:25 final size:24
Alignment explanation
Indices: 121693763--121693816 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
121693753 TGTACGTCAG
*
121693763 ATACTAAATTGAGACAAAAAATTT
1 ATACTAAATAGAGACAAAAAATTT
*
121693787 ATACTAAATAGGGACAAAAAATTT
1 ATACTAAATAGAGACAAAAAATTT
121693811 AGTACT
1 A-TACT
121693817 TTAGGAGCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (24 bp):
ATACTAAATAGAGACAAAAAATTT
Found at i:121699905 original size:60 final size:59
Alignment explanation
Indices: 121699792--121699910 Score: 134
Period size: 60 Copynumber: 2.0 Consensus size: 59
121699782 TGCCCAAGTA
* **
121699792 TGAAAAGTTACAAAATGATCATTCAACTATTAGTAATTTTCTTTTTTGGTCACCAAACTT
1 TGAAAAGTTACAAAATGATCACTCAACTATTAG-AATTTTCTTTTTTAATCACCAAACTT
* * *
121699852 TGAAAAGTTACAAAAT-AGTCACTCAATTATTCA-ATTTTATCTTTTTTAATCACCCAACT
1 TGAAAAGTTACAAAATGA-TCACTCAACTATT-AGAATTT-TCTTTTTTAATCACCAAACT
121699911 ATTTTAGATT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
59 5 0.10
60 44 0.88
61 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (59 bp):
TGAAAAGTTACAAAATGATCACTCAACTATTAGAATTTTCTTTTTTAATCACCAAACTT
Found at i:121700633 original size:16 final size:16
Alignment explanation
Indices: 121700595--121700633 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
121700585 ACTATCAATG
121700595 TCGATTGAGTCTTATT
1 TCGATTGAGTCTTATT
**
121700611 TTAATTGAGTCTTATT
1 TCGATTGAGTCTTATT
121700627 TCGATTG
1 TCGATTG
121700634 GTATAGACAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (16 bp):
TCGATTGAGTCTTATT
Found at i:121704282 original size:53 final size:53
Alignment explanation
Indices: 121704221--121704327 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
121704211 TGTAGACTTT
*
121704221 GGCTGTTAAGCTACTTAATTTGGTATTATTGAGTTCACCAAATATCATTTGTG
1 GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
121704274 GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
1 GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
121704327 G
1 G
121704328 ATAACATCAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (53 bp):
GGCTGTTAAGCTACTTAATATGGTATTATTGAGTTCACCAAATATCATTTGTG
Found at i:121709894 original size:2 final size:2
Alignment explanation
Indices: 121709887--121709924 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
121709877 GACTCAATTC
*
121709887 TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121709925 CCATGATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121710424 original size:9 final size:9
Alignment explanation
Indices: 121710410--121710434 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
121710400 AAAGTGAATT
121710410 TTTTTTTCA
1 TTTTTTTCA
121710419 TTTTTTTCA
1 TTTTTTTCA
121710428 TTTTTTT
1 TTTTTTT
121710435 AAATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:121711774 original size:22 final size:22
Alignment explanation
Indices: 121711749--121711792 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
121711739 TATAGAGAAG
121711749 TTAGAATTGTAATTTTTCAATT
1 TTAGAATTGTAATTTTTCAATT
121711771 TTAGAATTGTAATTTTTCAATT
1 TTAGAATTGTAATTTTTCAATT
121711793 AAGGGCTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.55
Consensus pattern (22 bp):
TTAGAATTGTAATTTTTCAATT
Found at i:121711832 original size:12 final size:12
Alignment explanation
Indices: 121711815--121711839 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121711805 TGCCCCCTTG
121711815 TATTCGCCCCTA
1 TATTCGCCCCTA
121711827 TATTCGCCCCTA
1 TATTCGCCCCTA
121711839 T
1 T
121711840 TAGTTAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.40, G:0.08, T:0.36
Consensus pattern (12 bp):
TATTCGCCCCTA
Found at i:121715608 original size:18 final size:18
Alignment explanation
Indices: 121715579--121715615 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
121715569 TTTAATTACT
121715579 AACAAGGTTCCATCTCTTA
1 AACAAGGTTCCATC-CTTA
121715598 AACAA-GTTCCATCCTTA
1 AACAAGGTTCCATCCTTA
121715615 A
1 A
121715616 TCCACATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 8 0.44
19 5 0.28
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (18 bp):
AACAAGGTTCCATCCTTA
Found at i:121720338 original size:4 final size:4
Alignment explanation
Indices: 121720329--121720355 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
121720319 AATTTTCAAG
121720329 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
121720356 TTGGAAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Done.