Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 403 of 410
Found at i:121725049 original size:10 final size:11
Alignment explanation
Indices: 121725016--121725053 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
121725006 AAATGATACC
*
121725016 AAAACAATGAA
1 AAAACAGTGAA
*
121725027 AAAATAGTGAA
1 AAAACAGTGAA
121725038 AAAACAGT-AA
1 AAAACAGTGAA
121725048 AAAACA
1 AAAACA
121725054 ACAACAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.71, C:0.08, G:0.11, T:0.11
Consensus pattern (11 bp):
AAAACAGTGAA
Found at i:121726545 original size:5 final size:5
Alignment explanation
Indices: 121726535--121726559 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
121726525 ATGCAATTAG
121726535 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
121726560 AGAGTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:121726804 original size:2 final size:2
Alignment explanation
Indices: 121726797--121726822 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121726787 TCTTGTTTTA
121726797 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121726823 TATTTACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121730621 original size:28 final size:29
Alignment explanation
Indices: 121730589--121730673 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 29
121730579 TTCTGGGATT
*
121730589 AAATTTTA-GGGTTTAATATAATTTTTAA
1 AAATTTTACGGGTTTAATAAAATTTTTAA
** **
121730617 AAATTTTACGATTTTAATGGAA-TTTTAA
1 AAATTTTACGGGTTTAATAAAATTTTTAA
*
121730645 AAA--TTAGGGGTTTAATTAAAATTTTTAA
1 AAATTTTACGGGTTTAA-TAAAATTTTTAA
121730673 A
1 A
121730674 TTTTTTTTGG
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
26 9 0.20
27 3 0.07
28 24 0.53
29 9 0.20
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (29 bp):
AAATTTTACGGGTTTAATAAAATTTTTAA
Found at i:121731325 original size:48 final size:48
Alignment explanation
Indices: 121731256--121731444 Score: 308
Period size: 48 Copynumber: 3.9 Consensus size: 48
121731246 CTCGTGTTTT
* * * *
121731256 TATATATATTAGTTGT-AATGTTATATGTGTTGTACGTGATTTTATGTA
1 TATATAGATTAGTT-TCAATGTTACATGCGTCGTACGTGATTTTATGTA
*
121731304 TATATAGATTAGTTTTAATGTTACATGCGTCGTACGTGATTTTATGTA
1 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTATGTA
*
121731352 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTAATTTTATGTA
1 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTATGTA
121731400 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTAT
1 TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTAT
121731445 CTGTATTTTT
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 1 0.01
48 132 0.99
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.47
Consensus pattern (48 bp):
TATATAGATTAGTTTCAATGTTACATGCGTCGTACGTGATTTTATGTA
Found at i:121731944 original size:25 final size:25
Alignment explanation
Indices: 121731872--121731945 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
121731862 TATTAATTAA
121731872 GTGATAATAATCTAAAATAATAAGT
1 GTGATAATAATCTAAAATAATAAGT
121731897 GTGATGCAAT-AT-T--AAT--TAA--
1 GTGAT--AATAATCTAAAATAATAAGT
121731916 GTGATAATAATCTAAAATAATAAGT
1 GTGATAATAATCTAAAATAATAAGT
121731941 GTGAT
1 GTGAT
121731946 TTAATATGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 20
0.66 0.00 0.34
Matches are distributed among these distances:
17 3 0.08
18 2 0.05
19 6 0.15
21 6 0.15
23 6 0.15
25 11 0.28
26 2 0.05
27 3 0.08
ACGTcount: A:0.47, C:0.04, G:0.15, T:0.34
Consensus pattern (25 bp):
GTGATAATAATCTAAAATAATAAGT
Found at i:121731952 original size:44 final size:44
Alignment explanation
Indices: 121731857--121731945 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
121731847 AATATTAGAC
121731857 TGCAATATTAATTAAGTGATAATAATCTAAAATAATAAGTGTGA
1 TGCAATATTAATTAAGTGATAATAATCTAAAATAATAAGTGTGA
121731901 TGCAATATTAATTAAGTGATAATAATCTAAAATAATAAGTGTGA
1 TGCAATATTAATTAAGTGATAATAATCTAAAATAATAAGTGTGA
121731945 T
1 T
121731946 TTAATATGGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.35
Consensus pattern (44 bp):
TGCAATATTAATTAAGTGATAATAATCTAAAATAATAAGTGTGA
Found at i:121734311 original size:18 final size:19
Alignment explanation
Indices: 121734269--121734317 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
121734259 ATATATATAT
*
121734269 AAATAATTTTTAAAAATTCA
1 AAAT-ATTTATAAAAATTCA
121734289 AAATATTTATAAAAATTC-
1 AAATATTTATAAAAATTCA
*
121734307 TAATATTTATA
1 AAATATTTATA
121734318 TTTTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 10 0.37
19 13 0.48
20 4 0.15
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATATTTATAAAAATTCA
Found at i:121736087 original size:26 final size:26
Alignment explanation
Indices: 121736012--121736087 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
121736002 TAAAGTAGCT
* * *
121736012 AAATTACTATAATACCCTTATGTATGGA
1 AAATTACTATTATACCCTTA-G-GTGCA
*
121736040 AAATTACTGTTATAACCC-TAGGTGCA
1 AAATTACTATTAT-ACCCTTAGGTGCA
*
121736066 AAATTACCATTATACCCTTAGG
1 AAATTACTATTATACCCTTAGG
121736088 GTTAATTTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
25 4 0.10
26 18 0.45
27 1 0.03
28 13 0.32
29 4 0.10
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (26 bp):
AAATTACTATTATACCCTTAGGTGCA
Found at i:121736233 original size:27 final size:26
Alignment explanation
Indices: 121736191--121736322 Score: 131
Period size: 27 Copynumber: 4.9 Consensus size: 26
121736181 AGGAAGCGTC
*
121736191 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* * *
121736218 CTGATGGCTCTACCACATATATCTGCT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
121736245 CTGGTGGCTATGCCACGATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
121736272 -TCGGTGGCTCTGCCACATATATCTGTT
1 CT-GGTGGCTCTGCCACAT-TATCTGAT
* *
121736299 CTGGTGACTCTGCCACAATATCTG
1 CTGGTGGCTCTGCCACATTATCTG
121736323 TGTCGTAACC
Statistics
Matches: 86, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
26 11 0.13
27 72 0.84
28 3 0.03
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:121736280 original size:54 final size:54
Alignment explanation
Indices: 121736191--121736321 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 54
121736181 AGGAAGCGTC
*
121736191 CTGGTGGCTATGCCACAATTATCTGATCTGATGGCTCTACCACATATATCTGCT
1 CTGGTGGCTATGCCACAATTATCTAATCTGATGGCTCTACCACATATATCTGCT
* * * *
121736245 CTGGTGGCTATGCCACGATTATCTAAT-TCGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCT-GATGGCTCTACCACATATATCTGCT
* *
121736299 CTGGTGACTCTGCCACAA-TATCT
1 CTGGTGGCTATGCCACAATTATCT
121736322 GTGTCGTAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 6 0.09
54 62 0.91
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGATGGCTCTACCACATATATCTGCT
Found at i:121737539 original size:3 final size:3
Alignment explanation
Indices: 121737526--121737611 Score: 72
Period size: 3 Copynumber: 28.3 Consensus size: 3
121737516 GAGGGCATAT
*
121737526 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA AGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
121737573 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121737612 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 7, Indels: 16
0.75 0.08 0.18
Matches are distributed among these distances:
2 8 0.12
3 49 0.72
4 10 0.15
5 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:121737550 original size:12 final size:12
Alignment explanation
Indices: 121737526--121737608 Score: 80
Period size: 12 Copynumber: 6.8 Consensus size: 12
121737516 GAGGGCATAT
121737526 ATAATAT-AATA
1 ATAATATAAATA
121737537 ATAATATAAATA
1 ATAATATAAATA
121737549 ATAATATATACATGA
1 ATAATATA-A-AT-A
*
121737564 AGAATA-ATAATA
1 ATAATATA-AATA
121737576 ATAATATAAATA
1 ATAATATAAATA
* *
121737588 ATAGTAAAAATA
1 ATAATATAAATA
*
121737600 ATAAAATAA
1 ATAATATAA
121737609 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
11 7 0.12
12 38 0.63
13 4 0.07
14 5 0.08
15 6 0.10
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:121737599 original size:27 final size:27
Alignment explanation
Indices: 121737526--121737612 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 27
121737516 GAGGGCATAT
* *
121737526 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * *
121737552 AT-ATATACATGA-AG-AATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121737576 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121737603 A-AATAATAAA
1 ATAAT-ATAAA
121737613 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
24 10 0.21
25 13 0.27
26 10 0.21
27 15 0.31
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:121737940 original size:25 final size:25
Alignment explanation
Indices: 121737908--121737956 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
121737898 AAAAACTAGC
*
121737908 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAA-AACCTT
121737933 CTTTCCAAAAAAACAAAAAAACCT
1 CTTTCCAAAAAAACAAAAAAACCT
121737957 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.53, C:0.24, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAAACAAAAAAACCTT
Found at i:121737967 original size:20 final size:23
Alignment explanation
Indices: 121737942--121737988 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121737932 TCTTTCCAAA
121737942 AAAACAAA-AA-AA-CCTCCTCC
1 AAAACAAAGAACAATCCTCCTCC
*
121737962 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAATCCTCCTCC
121737985 AAAA
1 AAAA
121737989 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 2 0.09
23 11 0.48
ACGTcount: A:0.55, C:0.30, G:0.02, T:0.13
Consensus pattern (23 bp):
AAAACAAAGAACAATCCTCCTCC
Found at i:121738108 original size:21 final size:21
Alignment explanation
Indices: 121738070--121738126 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
121738060 TGGGGTGGTT
121738070 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAA-GGTGGTGGAG
*
121738092 TTGGTGGCCAAGGTGGTGGAG
1 TAGGTGGCCAAGGTGGTGGAG
121738113 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
121738127 TTTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.18, C:0.11, G:0.51, T:0.21
Consensus pattern (21 bp):
TAGGTGGCCAAGGTGGTGGAG
Found at i:121743596 original size:26 final size:26
Alignment explanation
Indices: 121743567--121743674 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
121743557 TGGTACAAAT
121743567 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
121743593 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
121743619 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
121743645 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
121743671 TGAT
1 TGAT
121743675 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:121745324 original size:27 final size:26
Alignment explanation
Indices: 121745284--121745423 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
121745274 AGGAAGCGTC
*
121745284 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
121745311 CTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
121745338 CTGGTGGCTATGCCACGATTATCT-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
121745364 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
121745391 CTGGTGACTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
121745418 CTGGTG
1 CTGGTG
121745424 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.02
26 29 0.29
27 66 0.67
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:121745424 original size:27 final size:27
Alignment explanation
Indices: 121745284--121745441 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
121745274 AGGAAGCGTC
*
121745284 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
121745311 CTGGTGGCTCTGCCACATATATCTG-CT
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
121745338 CTGGTGGCTATGCCACGATTATC--TAT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
121745364 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
121745391 CTGGTGACTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
121745418 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
121745442 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 9, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.01
26 29 0.25
27 81 0.71
28 3 0.03
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:121745441 original size:53 final size:54
Alignment explanation
Indices: 121745284--121745423 Score: 205
Period size: 53 Copynumber: 2.6 Consensus size: 54
121745274 AGGAAGCGTC
121745284 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTATGCCACAA-TATCTGTATCTGGTGGCTCTGCCACATATATCTGCT
* *
121745338 CTGGTGGCTATGCCACGATTATC--TATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-AATATCTGTATCTGGTGGCTCTGCCACATATATCTGCT
* *
121745391 CTGGTGACTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATATCTGTATCTGGTG
121745424 ACTTCGTCAC
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
52 5 0.06
53 42 0.55
54 29 0.38
55 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATATCTGTATCTGGTGGCTCTGCCACATATATCTGCT
Found at i:121746701 original size:29 final size:30
Alignment explanation
Indices: 121746650--121746713 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 30
121746640 ACTTATTTTA
121746650 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
121746680 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
121746709 TTGTT
1 TTGTT
121746714 TGTTAAGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 22 0.67
30 11 0.33
ACGTcount: A:0.23, C:0.03, G:0.14, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:121747344 original size:17 final size:18
Alignment explanation
Indices: 121747310--121747347 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
121747300 TTCATTCCTA
121747310 ATAAAAAAAATTCAAATTT
1 ATAAAAAAAATT-AAATTT
*
121747329 ATAAAAAATATT-AATTT
1 ATAAAAAAAATTAAATTT
121747346 AT
1 AT
121747348 CTTGCTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
19 11 0.61
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAAAAAATTAAATTT
Found at i:121751136 original size:12 final size:11
Alignment explanation
Indices: 121751118--121751158 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
121751108 GCTGTATCCC
121751118 TATATATATTA
1 TATATATATTA
121751129 TGATATATATT-
1 T-ATATATATTA
*
121751140 TACATATA-TA
1 TATATATATTA
121751150 TATATATAT
1 TATATATAT
121751159 GTAATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 1 0.04
10 13 0.52
11 2 0.08
12 9 0.36
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (11 bp):
TATATATATTA
Found at i:121753093 original size:25 final size:25
Alignment explanation
Indices: 121753065--121753117 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
121753055 ATATTATGTG
*
121753065 AAATAATATATAGAATACA-ATATTA
1 AAAT-ATATACAGAATACACATATTA
* *
121753090 AAATATTTACAGAATATACATATTA
1 AAATATATACAGAATACACATATTA
121753115 AAA
1 AAA
121753118 ATAACTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (25 bp):
AAATATATACAGAATACACATATTA
Found at i:121757691 original size:12 final size:12
Alignment explanation
Indices: 121757664--121757705 Score: 57
Period size: 13 Copynumber: 3.3 Consensus size: 12
121757654 TTAAACATAA
*
121757664 TTTTTTATTATCG
1 TTTTTTATT-TAG
121757677 TTTTTTATTTAG
1 TTTTTTATTTAG
121757689 TTTTTTATATTAG
1 TTTTTTAT-TTAG
121757702 TTTT
1 TTTT
121757706 AGAATTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (12 bp):
TTTTTTATTTAG
Found at i:121757694 original size:14 final size:13
Alignment explanation
Indices: 121757676--121757705 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
121757666 TTTTATTATC
121757676 GTTTTTTAT-TTA
1 GTTTTTTATATTA
121757688 GTTTTTTATATTA
1 GTTTTTTATATTA
121757701 GTTTT
1 GTTTT
121757706 AGAATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (13 bp):
GTTTTTTATATTA
Found at i:121757804 original size:9 final size:9
Alignment explanation
Indices: 121757790--121757832 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 9
121757780 GTCATCACTT
121757790 AAATTTTTA
1 AAATTTTTA
121757799 AAATTTTCATA
1 AAATTTT--TA
121757810 TAAATTTTTTA
1 -AAA-TTTTTA
121757821 AAATTTTTA
1 AAATTTTTA
121757830 AAA
1 AAA
121757833 AATAACGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 16 0.53
10 3 0.10
11 4 0.13
12 3 0.10
13 4 0.13
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (9 bp):
AAATTTTTA
Found at i:121758361 original size:2 final size:2
Alignment explanation
Indices: 121758316--121758344 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121758306 TTATACAAAC
121758316 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121758345 CTTAAGGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121760932 original size:31 final size:31
Alignment explanation
Indices: 121760897--121760956 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
121760887 ACATTTTCCA
121760897 AATTCAAAGATCAAAATAAATATAATTGTCC
1 AATTCAAAGATCAAAATAAATATAATTGTCC
* * * * *
121760928 AATTCGAATATCAAAGTGAATCTAATTGT
1 AATTCAAAGATCAAAATAAATATAATTGT
121760957 AAAATTCTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.32
Consensus pattern (31 bp):
AATTCAAAGATCAAAATAAATATAATTGTCC
Found at i:121760963 original size:31 final size:31
Alignment explanation
Indices: 121760896--121760963 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
121760886 TACATTTTCC
*
121760896 AAATTCAAAGATCAAAATAAATATAATTGTC
1 AAATTCAAAGATCAAAATAAATATAATTGTA
* * * * * *
121760927 CAATTCGAATATCAAAGTGAATCTAATTGTA
1 AAATTCAAAGATCAAAATAAATATAATTGTA
121760958 AAATTC
1 AAATTC
121760964 TAGAACTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.31
Consensus pattern (31 bp):
AAATTCAAAGATCAAAATAAATATAATTGTA
Found at i:121788944 original size:17 final size:16
Alignment explanation
Indices: 121788915--121788946 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
121788905 TTTTTATGTT
121788915 TTTATATATTATATAC
1 TTTATATATTATATAC
121788931 TTTATATCATTATATA
1 TTTATAT-ATTATATA
121788947 AACATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATATATTATATAC
Found at i:121791244 original size:3 final size:3
Alignment explanation
Indices: 121791236--121791264 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
121791226 AACACAAGTT
121791236 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
121791265 TGTTTCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:121794415 original size:6 final size:6
Alignment explanation
Indices: 121794404--121794474 Score: 97
Period size: 6 Copynumber: 11.5 Consensus size: 6
121794394 TGGATTTTAT
*
121794404 TCAAAA TCAAAA TTAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAAAAA
1 TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TC-AAAA
* *
121794453 TCAAAAA TCAAAG TCAACA TCA
1 TC-AAAA TCAAAA TCAAAA TCA
121794475 GCATCAGCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
6 46 0.78
7 13 0.22
ACGTcount: A:0.63, C:0.17, G:0.01, T:0.18
Consensus pattern (6 bp):
TCAAAA
Found at i:121795001 original size:2 final size:2
Alignment explanation
Indices: 121794994--121795027 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
121794984 AGTTTTTATC
121794994 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121795028 TAATACAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121795919 original size:31 final size:29
Alignment explanation
Indices: 121795851--121795939 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 29
121795841 ATCTTAAAAT
*
121795851 TATACATGAATTTTGATTTGGTGT-AATTA
1 TATACATGAATTTTAATTTGGT-TCAATTA
* *
121795880 TACACATGATATTTTAATTATGGTTCAATTG
1 TATACATGA-ATTTTAATT-TGGTTCAATTA
* *
121795911 TATACATGAAACTTTAATTTTGATTCAAT
1 TATACATG-AATTTTAA-TTTGGTTCAAT
121795940 CATGCATATT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
29 8 0.16
30 9 0.18
31 29 0.59
32 3 0.06
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (29 bp):
TATACATGAATTTTAATTTGGTTCAATTA
Found at i:121796096 original size:30 final size:29
Alignment explanation
Indices: 121796060--121796116 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
121796050 GAATTTGATC
**
121796060 AAATCAAAAGTTCATGTATAAAATTACACA
1 AAATCAAAA-TTCACATATAAAATTACACA
121796090 AAATCAAAATTCACATATAAAATTACA
1 AAATCAAAATTCACATATAAAATTACA
121796117 ATTAGACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (29 bp):
AAATCAAAATTCACATATAAAATTACACA
Found at i:121796974 original size:2 final size:2
Alignment explanation
Indices: 121796967--121797006 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
121796957 GTAAATTTAC
121796967 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121797007 GGAGTTTACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121797561 original size:2 final size:2
Alignment explanation
Indices: 121797554--121797595 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
121797544 TGATTTAGTG
*
121797554 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121797596 AATACACACA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121799036 original size:18 final size:19
Alignment explanation
Indices: 121799009--121799048 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
121798999 TTGAATCGGA
*
121799009 TTTTATAAATTT-TAAAAT
1 TTTTACAAATTTATAAAAT
*
121799027 TTTTACAAATTTATAATAT
1 TTTTACAAATTTATAAAAT
121799046 TTT
1 TTT
121799049 ATTTAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTACAAATTTATAAAAT
Found at i:121799547 original size:15 final size:15
Alignment explanation
Indices: 121799527--121799560 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
121799517 TTAACTTGGA
121799527 TCTAATGTATGTTAT
1 TCTAATGTATGTTAT
121799542 TCTAATGTATGTTAT
1 TCTAATGTATGTTAT
121799557 TCTA
1 TCTA
121799561 CTAGTTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (15 bp):
TCTAATGTATGTTAT
Found at i:121799693 original size:31 final size:31
Alignment explanation
Indices: 121799655--121799720 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
121799645 ACAACCCAAA
*
121799655 GACTTAAAT-AAAGACTTTTGAATAGTTCAAC
1 GACTTAAATGAAA-ACTTTTGAATAATTCAAC
* *
121799686 GACTTAAATGAAAATTTTTGAATAATTCAAT
1 GACTTAAATGAAAACTTTTGAATAATTCAAC
121799717 GACT
1 GACT
121799721 ATTTTGTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (31 bp):
GACTTAAATGAAAACTTTTGAATAATTCAAC
Found at i:121807106 original size:2 final size:2
Alignment explanation
Indices: 121807099--121807128 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
121807089 CTTCATAATT
121807099 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121807129 AATAGAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121810196 original size:13 final size:13
Alignment explanation
Indices: 121810178--121810205 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
121810168 TTGTCGCCTC
121810178 GATAATGATGTTT
1 GATAATGATGTTT
121810191 GATAATGATGTTT
1 GATAATGATGTTT
121810204 GA
1 GA
121810206 ATTGGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (13 bp):
GATAATGATGTTT
Found at i:121811151 original size:30 final size:30
Alignment explanation
Indices: 121811115--121811187 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
121811105 GAAAACCCTA
121811115 AAGTTCAGGCCCAATATGAAAACAATTGCC
1 AAGTTCAGGCCCAATATGAAAACAATTGCC
* ** **
121811145 AAGTTCAGGCTCCAATGTGGGAACTGTTGCC
1 AAGTTCAGGC-CCAATATGAAAACAATTGCC
121811176 AAGTTCAAGGCC
1 AAGTTC-AGGCC
121811188 TAGCTTGGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 10 0.28
31 22 0.61
32 4 0.11
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (30 bp):
AAGTTCAGGCCCAATATGAAAACAATTGCC
Found at i:121811381 original size:13 final size:15
Alignment explanation
Indices: 121811352--121811381 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
121811342 GCTTTAACCT
121811352 TATATTAAAATTATA
1 TATATTAAAATTATA
*
121811367 TATATTAAATTTATA
1 TATATTAAAATTATA
121811382 CATGAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATTAAAATTATA
Found at i:121811745 original size:30 final size:29
Alignment explanation
Indices: 121811709--121811772 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
121811699 GTCATTGTAC
* *
121811709 CTTTTATAAATTTGGAATTTAGTCTCTATA
1 CTTTTATAAATAT-GAATTTAGTCCCTATA
**
121811739 CTTTTATTTATATGAATTTAGTCCCTATA
1 CTTTTATAAATATGAATTTAGTCCCTATA
121811768 CTTTT
1 CTTTT
121811773 TGTTAGAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (29 bp):
CTTTTATAAATATGAATTTAGTCCCTATA
Found at i:121812108 original size:13 final size:14
Alignment explanation
Indices: 121812087--121812115 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
121812077 TTGTGTATTC
121812087 TTTATTTTTATTTT
1 TTTATTTTTATTTT
121812101 TTTA-TTTTATTTT
1 TTTATTTTTATTTT
121812114 TT
1 TT
121812116 CACAAATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTATTTTTATTTT
Found at i:121822613 original size:54 final size:54
Alignment explanation
Indices: 121822549--121822657 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
121822539 ATACAAGTGT
121822549 TGTTAATGGTGATCTCAGAAAACCAAAATTTCTTGTTTTGTAACTCCTTTTTTG
1 TGTTAATGGTGATCTCAGAAAACCAAAATTTCTTGTTTTGTAACTCCTTTTTTG
121822603 TGTTAATGGTGATCTCAGAAAACCAAAATTTCTTGTTTTGTAACTCCTTTTTTG
1 TGTTAATGGTGATCTCAGAAAACCAAAATTTCTTGTTTTGTAACTCCTTTTTTG
121822657 T
1 T
121822658 TCTTTTTTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.45
Consensus pattern (54 bp):
TGTTAATGGTGATCTCAGAAAACCAAAATTTCTTGTTTTGTAACTCCTTTTTTG
Found at i:121829664 original size:11 final size:11
Alignment explanation
Indices: 121829650--121829689 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
121829640 TGTTTTCTCT
121829650 CTATTTTACTA
1 CTATTTTACTA
121829661 CTATTTTACTA
1 CTATTTTACTA
* * *
121829672 TTATATTGCTA
1 CTATTTTACTA
121829683 CTATTTT
1 CTATTTT
121829690 GTTGTTATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.03, T:0.57
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:121829789 original size:30 final size:30
Alignment explanation
Indices: 121829727--121829789 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
121829717 ACTTATTTTA
* *
121829727 TTGTTAATTTTGTTATTATCTTAAAGGTAT
1 TTGTTAATTTTGTTATCATCTTAAAGGCAT
* *
121829757 TTGTTAATTTTGTTATCATTTTAGAGGCAT
1 TTGTTAATTTTGTTATCATCTTAAAGGCAT
121829787 TTG
1 TTG
121829790 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATCATCTTAAAGGCAT
Found at i:121834277 original size:27 final size:27
Alignment explanation
Indices: 121834224--121834277 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
121834214 TTGACCACTA
*
121834224 ATTGTTTTTCTTTTATTATTATTTTTT
1 ATTGTTTTTCTTTTATTATTATATTTT
* *
121834251 ATTGTTTTTAC-TTTATTTTTGTATTTT
1 ATTGTTTTT-CTTTTATTATTATATTTT
121834278 TAAATTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.76
Consensus pattern (27 bp):
ATTGTTTTTCTTTTATTATTATATTTT
Found at i:121838792 original size:17 final size:17
Alignment explanation
Indices: 121838768--121838816 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
121838758 ATTAATATAG
121838768 TAATAATAAATATTTAT
1 TAATAATAAATATTTAT
*
121838785 TACA-AATATAA-ATATAT
1 TA-ATAATA-AATATTTAT
121838802 TAATAATAAATATTT
1 TAATAATAAATATTT
121838817 TTTAGTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
16 3 0.12
17 20 0.77
18 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATAAATATTTAT
Found at i:121838812 original size:15 final size:15
Alignment explanation
Indices: 121838761--121838814 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
121838751 ATTCAATATT
*
121838761 AATATAGTAATAATA
1 AATATATTAATAATA
*
121838776 AATATTTATTACAAATATA
1 AATA--TATTA-ATA-ATA
121838795 AATATATTAATAATA
1 AATATATTAATAATA
121838810 AATAT
1 AATAT
121838815 TTTTTAGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 12 0.38
16 2 0.06
17 9 0.28
18 2 0.06
19 7 0.22
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:121849509 original size:10 final size:10
Alignment explanation
Indices: 121849485--121849515 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
121849475 CAATAAAAAA
121849485 ATATTTTTAT
1 ATATTTTTAT
121849495 A-ATTTTTAT
1 ATATTTTTAT
121849504 ATATTTTTAT
1 ATATTTTTAT
121849514 AT
1 AT
121849516 TAAGATACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATTTTTAT
Found at i:121849816 original size:15 final size:15
Alignment explanation
Indices: 121849796--121849825 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
121849786 GTATTTCTTC
121849796 TCTACAAAACATTCA
1 TCTACAAAACATTCA
*
121849811 TCTACAAAACTTTCA
1 TCTACAAAACATTCA
121849826 GCATCATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (15 bp):
TCTACAAAACATTCA
Found at i:121851711 original size:14 final size:15
Alignment explanation
Indices: 121851665--121851720 Score: 69
Period size: 14 Copynumber: 3.7 Consensus size: 15
121851655 TTTACAAATA
* *
121851665 AAAATATGTAATAAT
1 AAAATATATAGTAAT
121851680 ATAAATCATATAGTAAT
1 A-AAAT-ATATAGTAAT
121851697 AAAATATAT-GTAAT
1 AAAATATATAGTAAT
121851711 AAAATATATA
1 AAAATATATA
121851721 ATATAATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 14 0.39
15 5 0.14
16 8 0.22
17 9 0.25
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (15 bp):
AAAATATATAGTAAT
Found at i:121851722 original size:12 final size:13
Alignment explanation
Indices: 121851687--121851730 Score: 63
Period size: 14 Copynumber: 3.4 Consensus size: 13
121851677 AATATAAATC
121851687 ATATAGTAATAAA
1 ATATAGTAATAAA
121851700 ATATATGTAATAAA
1 ATATA-GTAATAAA
*
121851714 ATATA-TAATATA
1 ATATAGTAATAAA
121851726 ATATA
1 ATATA
121851731 AGAAGAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 11 0.38
13 5 0.17
14 13 0.45
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (13 bp):
ATATAGTAATAAA
Found at i:121851725 original size:34 final size:33
Alignment explanation
Indices: 121851661--121851725 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
121851651 ATAATTTACA
* *
121851661 AATAAAAATATGTAATAATATAAATCATATAGT
1 AATAAAAATATGTAATAAAATAAATAATATAGT
*
121851694 AATAAAATATATGTAATAAAATATATAATATA
1 AATAAAA-ATATGTAATAAAATAAATAATATA
121851726 ATATAAGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (33 bp):
AATAAAAATATGTAATAAAATAAATAATATAGT
Found at i:121851866 original size:14 final size:14
Alignment explanation
Indices: 121851830--121851882 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
121851820 TTACTAACTT
*
121851830 TATAA-ATAAAATA
1 TATAATATAGAATA
121851843 TATAATAATATGAATAA
1 TATAAT-ATA-GAAT-A
*
121851860 TATAATATATAATA
1 TATAATATAGAATA
121851874 TATAATATA
1 TATAATATA
121851883 TAAAAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 5 0.15
14 10 0.29
15 6 0.18
16 6 0.18
17 7 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
TATAATATAGAATA
Found at i:121851953 original size:13 final size:13
Alignment explanation
Indices: 121851830--121852010 Score: 67
Period size: 13 Copynumber: 13.7 Consensus size: 13
121851820 TTACTAACTT
*
121851830 TATAAATAAAATA
1 TATATATAAAATA
*
121851843 TATA-ATAATATGA
1 TATATATAAAAT-A
*
121851856 -ATA-ATATAATA
1 TATATATAAAATA
*
121851867 TATAATATATAATA
1 TAT-ATATAAAATA
*
121851881 TATA-AAAAAATA
1 TATATATAAAATA
* *
121851893 TGTACTA-AAAACA
1 TATA-TATAAAATA
*
121851906 TATA-ATATAGATA
1 TATATATA-AAATA
*
121851919 TA-A-ATAATATA
1 TATATATAAAATA
121851930 TATATATAAAATA
1 TATATATAAAATA
121851943 TATGATA-AAAATTAAA
1 TAT-ATATAAAA-T--A
*
121851959 AATATATAATAATA
1 TATATATAA-AATA
*
121851973 TAATAGATAAAATA
1 T-ATATATAAAATA
*
121851987 TAGTA-AAATAAATAA
1 TA-TATATA-AAAT-A
121852002 TATATATAA
1 TATATATAA
121852011 TGAAAAGACA
Statistics
Matches: 130, Mismatches: 17, Indels: 41
0.69 0.09 0.22
Matches are distributed among these distances:
11 8 0.06
12 31 0.24
13 37 0.28
14 31 0.24
15 15 0.12
16 6 0.05
17 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (13 bp):
TATATATAAAATA
Found at i:121852073 original size:13 final size:14
Alignment explanation
Indices: 121852055--121852087 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
121852045 ATAACAAAAT
121852055 AAAATATAT-ATAA
1 AAAATATATGATAA
121852068 AAAATATATGATAA
1 AAAATATATGATAA
121852082 ACAAAT
1 A-AAAT
121852088 CCTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 5 0.28
15 4 0.22
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (14 bp):
AAAATATATGATAA
Found at i:121853193 original size:3 final size:3
Alignment explanation
Indices: 121853185--121853241 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
121853175 CATAAGTACA
121853185 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
121853233 ATT ATT ATT
1 ATT ATT ATT
121853242 TTCCAAGACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:121861233 original size:289 final size:289
Alignment explanation
Indices: 121860691--121861368 Score: 1034
Period size: 289 Copynumber: 2.3 Consensus size: 289
121860681 ACGTGAAAGC
* * * * ** * * * * *
121860691 CAAATCAGCTATATCTTCGATTTGTTCCTCGTAAGTACCAGAATACTAAACCATCTTAGATCTAC
1 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
* *
121860756 TTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCTGTCGAATATGGAGACGCC
66 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
* * *
121860821 AAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAA
131 AAACTTCGATTTATTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACATAAA
* * * *
121860886 CACGTGAAAGCTAAATTAGCTATGTCTTTGATTTACTCCTTGTAAGAACAAGGATACCAAATCAT
196 CACGTGAAAGCCAAATCAGCTATGTCTTCGATTTACTCCTTGTAAGAACAAAGATACCAAATCAT
*
121860951 CTTGGGTCTATTTGAGAACATCTGAGAGT
261 CTTGGATCTATTTGAGAACATCTGAGAGT
121860980 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
1 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
121861045 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
66 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
* * *
121861110 AAACTTTGATTTATTCTCTGACAATACAAAGATGTCAAATCATCTTAGACTTGCTTCAACGTAAA
131 AAACTTCGATTTATTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACATAAA
** * *
121861175 CACGTGAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAGCACAAAGATACCAAATGA
196 CACGTGAAAGCCAAATCAGCTAT-GTCTTCGATTTACTCCTTGTAAGAACAAAGATACCAAATCA
* *
121861239 TCTTGGATTTGTTTGAGAACATCTGAGAGT
260 TCTTGGATCTATTTGAGAACATCTGAGAGT
*
121861269 CAAATATGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
1 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
* **
121861334 TTCAGTATAAACATCTGTAGGCCAGATCTGCTATG
66 TTCAGTATAAACATCTGAAGGTTAGATCTGCTATG
121861369 CTGCGGCCTA
Statistics
Matches: 354, Mismatches: 34, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
289 352 0.99
290 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (289 bp):
CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCC
AAACTTCGATTTATTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAACATAAA
CACGTGAAAGCCAAATCAGCTATGTCTTCGATTTACTCCTTGTAAGAACAAAGATACCAAATCAT
CTTGGATCTATTTGAGAACATCTGAGAGT
Found at i:121868511 original size:20 final size:20
Alignment explanation
Indices: 121868474--121868511 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
121868464 TGATGGGGAG
*
121868474 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
121868494 CAAGAA-ATCAAAGCTGGA
1 CAAGAATATC-AAGCTGGA
121868512 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:121870458 original size:46 final size:46
Alignment explanation
Indices: 121870406--121870633 Score: 341
Period size: 46 Copynumber: 5.0 Consensus size: 46
121870396 AGTGTGCTCT
121870406 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
121870452 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
121870498 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
121870544 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
121870590 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
121870634 TCATGTCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:121881425 original size:34 final size:34
Alignment explanation
Indices: 121881375--121881469 Score: 97
Period size: 34 Copynumber: 2.8 Consensus size: 34
121881365 AGGTAATAAG
*
121881375 GAAATATAGTAA-AATATAATATAATTTACAAATA
1 GAAATAT-GTAATAATATAATATAATATACAAATA
* **
121881409 GAAATATGTAATAATATAA-ATCATATAGTAATA
1 GAAATATGTAATAATATAATATAATATACAAATA
* *
121881442 AAATATATGTAATAAAAT-ATATAATATA
1 GAA-ATATGTAATAATATAATATAATATA
121881470 ATATAAGAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
33 17 0.33
34 34 0.67
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (34 bp):
GAAATATGTAATAATATAATATAATATACAAATA
Found at i:121881455 original size:14 final size:15
Alignment explanation
Indices: 121881405--121881464 Score: 68
Period size: 14 Copynumber: 3.9 Consensus size: 15
121881395 ATAATTTACA
* *
121881405 AATAGAAATATGTAAT
1 AATA-AAATATATAGT
121881421 AATATAAATCATATAGT
1 AATA-AAAT-ATATAGT
121881438 AATAAAATATAT-GT
1 AATAAAATATATAGT
121881452 AATAAAATATATA
1 AATAAAATATATA
121881465 ATATAATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
14 14 0.36
15 4 0.10
16 12 0.31
17 9 0.23
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (15 bp):
AATAAAATATATAGT
Found at i:121881466 original size:12 final size:13
Alignment explanation
Indices: 121881431--121881474 Score: 63
Period size: 14 Copynumber: 3.4 Consensus size: 13
121881421 AATATAAATC
121881431 ATATAGTAATAAA
1 ATATAGTAATAAA
121881444 ATATATGTAATAAA
1 ATATA-GTAATAAA
*
121881458 ATATA-TAATATA
1 ATATAGTAATAAA
121881470 ATATA
1 ATATA
121881475 AGAAGAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 11 0.38
13 5 0.17
14 13 0.45
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (13 bp):
ATATAGTAATAAA
Found at i:121881608 original size:17 final size:15
Alignment explanation
Indices: 121881578--121881770 Score: 103
Period size: 13 Copynumber: 13.2 Consensus size: 15
121881568 TAACTTTATA
*
121881578 AATAAAATATATAAT
1 AATATAATATATAAT
121881593 AATATGAATAATATAAT
1 AATAT-AAT-ATATAAT
121881610 -ATATAATATATAA-
1 AATATAATATATAAT
* *
121881623 AA-ATAATATGTACT
1 AATATAATATATAAT
*
121881637 AA-A-AACATATAAT
1 AATATAATATATAAT
*
121881650 -ATA-GATATA-AAT
1 AATATAATATATAAT
121881662 AATATATATATATAA-
1 AATATA-ATATATAAT
121881677 AATAT-ATGATA-AA-
1 AATATAAT-ATATAAT
*
121881690 AATTAAAAATATATAAT
1 AA-T-ATAATATATAAT
*
121881707 AATATAATAGATAA-
1 AATATAATATATAAT
*
121881721 AATATAGTA-A-AAT
1 AATATAATATATAAT
121881734 AA-ATATATATATATAT
1 AATATA-ATATATA-AT
121881750 ATATATATATATATATAT
1 A-ATATA-ATATATA-AT
121881768 AAT
1 AAT
121881771 GAAAATACAT
Statistics
Matches: 142, Mismatches: 14, Indels: 42
0.72 0.07 0.21
Matches are distributed among these distances:
12 9 0.06
13 35 0.25
14 23 0.16
15 31 0.22
16 17 0.12
17 12 0.08
18 15 0.11
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (15 bp):
AATATAATATATAAT
Found at i:121881615 original size:37 final size:37
Alignment explanation
Indices: 121881574--121881777 Score: 106
Period size: 38 Copynumber: 5.4 Consensus size: 37
121881564 TTACTAACTT
121881574 TATAAATAAAATATATAATAATATGAATA-ATATAATA
1 TATAAATAAAATATATAATAATAT-AATACATATAATA
* *
121881611 TATAATATATAAA-A-ATAATATGTACTAAAAACATATAATA
1 TATAA-ATA-AAATATATAATA-ATA-T-AATACATATAATA
* *
121881651 TAGATAT-AAATA-ATATATATATATAA-A-ATAT-ATGA
1 TATAAATAAAATATATA-ATA-ATATAATACATATAAT-A
* * *
121881686 TAAAAATTAAAAATATATAATAATATAATAGATAAAATA
1 TATAAA-T-AAAATATATAATAATATAATACATATAATA
*
121881725 TAGTAAA-ATAAATATAT-AT-ATATATATATATATATATA
1 TA-TAAATA-AAATATATAATAATATA-ATACATATA-ATA
121881763 TATATAATGAAAATA
1 TATA-AAT-AAAATA
121881778 CATATAACAT
Statistics
Matches: 133, Mismatches: 12, Indels: 42
0.71 0.06 0.22
Matches are distributed among these distances:
34 2 0.02
35 9 0.07
36 7 0.05
37 34 0.26
38 35 0.26
39 29 0.22
40 17 0.13
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (37 bp):
TATAAATAAAATATATAATAATATAATACATATAATA
Found at i:121881627 original size:22 final size:22
Alignment explanation
Indices: 121881577--121881769 Score: 90
Period size: 20 Copynumber: 9.0 Consensus size: 22
121881567 CTAACTTTAT
*
121881577 AAATAAAATATATAATAATATGAA
1 AAATATAATATATAAT-ATAT-AA
*
121881601 TAATATAATATATAATATAT-A
1 AAATATAATATATAATATATAA
* *
121881622 AAA-ATAATATGTACTA-A-AA
1 AAATATAATATATAATATATAA
* *
121881641 ACATATAATATA-GATATA-AA
1 AAATATAATATATAATATATAA
*
121881661 TAATATATATATATAAAATATATGATA
1 -AA-ATATA-ATATATAATATAT-A-A
*
121881688 AAA-AT--TA-AAAATATATAA
1 AAATATAATATATAATATATAA
* * *
121881706 TAATATAATAGATAAAATATAGTA
1 AAATATAATATATAATATATA--A
*
121881730 AAATA-AATATAT-ATATATAT
1 AAATATAATATATAATATATAA
*
121881750 ATATAT-ATATAT-ATATATAA
1 AAATATAATATATAATATATAA
121881770 TGAAAATACA
Statistics
Matches: 132, Mismatches: 20, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
18 3 0.02
19 9 0.07
20 47 0.36
21 8 0.06
22 19 0.14
23 15 0.11
24 26 0.20
25 1 0.01
26 3 0.02
27 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (22 bp):
AAATATAATATATAATATATAA
Found at i:121881662 original size:35 final size:34
Alignment explanation
Indices: 121881579--121881790 Score: 93
Period size: 35 Copynumber: 6.1 Consensus size: 34
121881569 AACTTTATAA
* *
121881579 ATAAAATATAT-AATAATATGAATAATATAATAT
1 ATAATATATATAAATAATATGAATAATATAACAT
* *
121881612 ATAATATATAAAAATAATATGTACTAA-A-AACAT
1 ATAATATATATAAATAATATG-AATAATATAACAT
*
121881645 ATAATATAGATATAAATAATAT--ATATATATAAAAT
1 ATAATAT--ATATAAATAATATGAATA-ATATAACAT
* * * * *
121881680 ATATGATAAAAATTAAA-AATATATAATAATATAATAG
1 ATA--ATATATA-TAAATAATAT-GAATAATATAACAT
* *
121881717 ATAAAATATAGTAAAATAA-AT--ATATATATATATAT
1 ATAATATATA-T-AAATAATATGAATA-ATATA-ACAT
* *
121881752 ATATATATATATATATAATGA-AAATACATATAACAT
1 ATA-ATATATATAAATAAT-ATGAATA-ATATAACAT
121881788 ATA
1 ATA
121881791 GTAAAATGCA
Statistics
Matches: 137, Mismatches: 20, Indels: 41
0.69 0.10 0.21
Matches are distributed among these distances:
32 2 0.01
33 24 0.18
34 21 0.15
35 42 0.31
36 22 0.16
37 23 0.17
38 3 0.02
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (34 bp):
ATAATATATATAAATAATATGAATAATATAACAT
Found at i:121881670 original size:2 final size:2
Alignment explanation
Indices: 121881643--121881768 Score: 72
Period size: 2 Copynumber: 66.5 Consensus size: 2
121881633 TACTAAAAAC
* * *
121881643 AT AT A- AT AT AG AT AT AA AT A- AT AT AT AT AT AT A- AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
121881682 AT GAT AA AA AT -T AA AA AT AT AT A- AT A- AT AT A- AT AG AT A-
1 AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
121881720 AA AT AT AGT A- AA AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121881762 AT AT AT A
1 AT AT AT A
121881769 ATGAAAATAC
Statistics
Matches: 98, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
1 9 0.09
2 85 0.87
3 4 0.04
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (2 bp):
AT
Found at i:121881697 original size:57 final size:56
Alignment explanation
Indices: 121881581--121881726 Score: 147
Period size: 57 Copynumber: 2.6 Consensus size: 56
121881571 CTTTATAAAT
***
121881581 AAAATATATAATAATATGAATAATATAATATATAATATATAAAAATAATATGTACTA
1 AAAATATATAAT-ATATGAATAATATAATATATAATATATAAAAATAATAAAAACTA
* *
121881638 AAAACATATAATATA-GATATAA-ATAATATAT-ATATATAAAATATATGATAAAAATTA
1 AAAATATATAATATATGA-ATAATATAATATATAATATATAAAA-ATA--ATAAAAACTA
*
121881695 AAAATATATAATAATAT-AATAGATAAAATATA
1 AAAATATATAAT-ATATGAATA-ATATAATATA
121881727 GTAAAATAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
54 10 0.14
55 14 0.19
56 7 0.09
57 31 0.42
58 5 0.07
59 7 0.09
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (56 bp):
AAAATATATAATATATGAATAATATAATATATAATATATAAAAATAATAAAAACTA
Found at i:121881732 original size:42 final size:43
Alignment explanation
Indices: 121881654--121881758 Score: 128
Period size: 44 Copynumber: 2.4 Consensus size: 43
121881644 TATAATATAG
*
121881654 ATATA-AATAATATATATATATAAAATATATGATAAAAATTAAAA
1 ATATATAATAATATATATAGATAAAATATATGAT-AAAA-TAAAA
*
121881698 ATATATAATAATATA-ATAGATAAAATATA-G-TAAAATAAAT
1 ATATATAATAATATATATAGATAAAATATATGATAAAATAAAA
121881738 ATATATATATATATATATATA
1 ATATATA-ATA-ATATATATA
121881759 TATATATATA
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
40 11 0.20
41 7 0.13
42 6 0.11
43 4 0.07
44 18 0.33
45 9 0.16
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (43 bp):
ATATATAATAATATATATAGATAAAATATATGATAAAATAAAA
Found at i:121883520 original size:45 final size:45
Alignment explanation
Indices: 121883456--121883545 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
121883446 TTCTTCGACT
121883456 TGATTATGACATATTTGTTTGGAGCAAAATGATGATGTAACACCC
1 TGATTATGACATATTTGTTTGGAGCAAAATGATGATGTAACACCC
121883501 TGATTATGACATATTTGTTTGGAGCAAAATGATGATGTAACACCC
1 TGATTATGACATATTTGTTTGGAGCAAAATGATGATGTAACACCC
121883546 CCTACCCGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (45 bp):
TGATTATGACATATTTGTTTGGAGCAAAATGATGATGTAACACCC
Found at i:121884204 original size:39 final size:39
Alignment explanation
Indices: 121884145--121884440 Score: 502
Period size: 39 Copynumber: 7.6 Consensus size: 39
121884135 ATCATGATCT
* * *
121884145 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
121884184 GAAGCTCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
121884223 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
121884262 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
121884301 GAAGCCCGAAGGCTAACTGATGCATACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
121884340 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
121884379 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
121884418 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
121884441 TCATCAGAGC
Statistics
Matches: 242, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 242 1.00
ACGTcount: A:0.38, C:0.24, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:121887081 original size:117 final size:117
Alignment explanation
Indices: 121886875--121887107 Score: 423
Period size: 117 Copynumber: 2.0 Consensus size: 117
121886865 AGCCTAATAT
*
121886875 TTACACCTATAATATATTGTTGGATGCATTTTATCGAAGGATATGATTTCCAAAGCTGAAGTTGT
1 TTACACCTATAATATATTGTTGGATGCATTTTATAGAAGGATATGATTTCCAAAGCTGAAGTTGT
* *
121886940 TATTGGAGGGGATACTAAGCTCAGTCGATAACAACTTCATCATGGCTACATA
66 TATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCATGGCTACATA
121886992 TTACACCTATAATATATTGTTGGATGCATTTTATA-AGAGGATATGATTTCCAAAGCTGAAGTTG
1 TTACACCTATAATATATTGTTGGATGCATTTTATAGA-AGGATATGATTTCCAAAGCTGAAGTTG
121887056 TTATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCATGGCTACAT
65 TTATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCATGGCTACAT
121887108 TTTTGACATA
Statistics
Matches: 112, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
116 1 0.01
117 111 0.99
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (117 bp):
TTACACCTATAATATATTGTTGGATGCATTTTATAGAAGGATATGATTTCCAAAGCTGAAGTTGT
TATAGGAGGGAATACTAAGCTCAGTCGATAACAACTTCATCATGGCTACATA
Found at i:121889740 original size:38 final size:38
Alignment explanation
Indices: 121889664--121889743 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
121889654 GTTTCTCTCA
* *
121889664 TCTTCATCAATCCCTGTTTTTCTTTCTCTATTTATCTT
1 TCTTCATCAATCCCTGATTTTCTTTCTCTACTTATCTT
* * *
121889702 TCTTCATCAATCTCTGATTTTCTTTCTCTGCTTCTCTT
1 TCTTCATCAATCCCTGATTTTCTTTCTCTACTTATCTT
121889740 TCTT
1 TCTT
121889744 ATCTTGATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.11, C:0.28, G:0.04, T:0.57
Consensus pattern (38 bp):
TCTTCATCAATCCCTGATTTTCTTTCTCTACTTATCTT
Found at i:121891164 original size:9 final size:9
Alignment explanation
Indices: 121891141--121891263 Score: 54
Period size: 9 Copynumber: 13.2 Consensus size: 9
121891131 AAACCTGATC
*
121891141 TTTTTTTGA
1 TTTTTTTTA
*
121891150 TATTTTTTA
1 TTTTTTTTA
121891159 TTTTTTTT-
1 TTTTTTTTA
** *
121891167 TAACTTTTAA
1 T-TTTTTTTA
121891177 CTTTTTCTTTA
1 -TTTTT-TTTA
121891188 TTATTTTTT-
1 TT-TTTTTTA
*
121891197 CTTTTTTTA
1 TTTTTTTTA
** *
121891206 AGTTTTATA
1 TTTTTTTTA
121891215 TTTTTTCTTA
1 TTTTTT-TTA
121891225 TTTTATTTT-
1 TTTT-TTTTA
* *
121891234 GTTTATTTA
1 TTTTTTTTA
*
121891243 TTTTATTTA
1 TTTTTTTTA
121891252 TTTTTTGTTA
1 TTTTTT-TTA
121891262 TT
1 TT
121891264 AATTTTAAAA
Statistics
Matches: 84, Mismatches: 20, Indels: 19
0.68 0.16 0.15
Matches are distributed among these distances:
8 10 0.12
9 45 0.54
10 20 0.24
11 9 0.11
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.76
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:121891202 original size:37 final size:39
Alignment explanation
Indices: 121891140--121891233 Score: 108
Period size: 37 Copynumber: 2.5 Consensus size: 39
121891130 CAAACCTGAT
121891140 CTTTTT-TTGATATT-TTTTATT-TTTTTTTAACTTTTA-A
1 CTTTTTCTT-ATATTATTTT-TTCTTTTTTTAACTTTTATA
*
121891177 CTTTTTCTT-TATTATTTTTTCTTTTTTTAAGTTTTATA
1 CTTTTTCTTATATTATTTTTTCTTTTTTTAACTTTTATA
* *
121891215 TTTTTTCTTATTTTATTTT
1 CTTTTTCTTATATTATTTT
121891234 GTTTATTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
36 6 0.12
37 24 0.49
38 11 0.22
39 8 0.16
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (39 bp):
CTTTTTCTTATATTATTTTTTCTTTTTTTAACTTTTATA
Found at i:121891240 original size:24 final size:23
Alignment explanation
Indices: 121891188--121891257 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
121891178 TTTTTCTTTA
* *
121891188 TTATTTTTTCTTTTTTTAAGTTTT
1 TTATTTTTTCTTATTTT-ATTTTT
*
121891212 ATATTTTTTCTTATTTTATTTTGT
1 TTATTTTTTCTTATTTTATTTT-T
*
121891236 TTATTTATT-TTA-TTTATTTTT
1 TTATTTTTTCTTATTTTATTTTT
121891257 T
1 T
121891258 GTTATTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 7 0.17
24 23 0.57
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (23 bp):
TTATTTTTTCTTATTTTATTTTT
Found at i:121891242 original size:13 final size:13
Alignment explanation
Indices: 121891226--121891268 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
121891216 TTTTTCTTAT
*
121891226 TTTATTTTGTTTA
1 TTTATTTTATTTA
121891239 TTTATTTTATTTA
1 TTTATTTTATTTA
* *
121891252 TTTTTTGTTATTAA
1 TTTATT-TTATTTA
121891266 TTT
1 TTT
121891269 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:121891338 original size:22 final size:22
Alignment explanation
Indices: 121891298--121891366 Score: 95
Period size: 21 Copynumber: 3.0 Consensus size: 22
121891288 ATTTGAAATG
121891298 TTTTATAATATATATTTTTTTAAAA
1 TTTTA-AATAT-TA-TTTTTTAAAA
121891323 TTTTAAATATTA-TTTTTAAAA
1 TTTTAAATATTATTTTTTAAAA
*
121891344 TTTTGAATATTATTTTTTAAAA
1 TTTTAAATATTATTTTTTAAAA
121891366 T
1 T
121891367 ATTATTTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
21 20 0.48
22 10 0.24
23 2 0.05
24 5 0.12
25 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (22 bp):
TTTTAAATATTATTTTTTAAAA
Found at i:121891369 original size:15 final size:14
Alignment explanation
Indices: 121891344--121891384 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 14
121891334 ATTTTTAAAA
*
121891344 TTTTGAATATTATT
1 TTTTAAATATTATT
121891358 TTTTAAAATATTATT
1 TTTT-AAATATTATT
121891373 TTTTAAATATTA
1 TTTTAAATATTA
121891385 AATATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (14 bp):
TTTTAAATATTATT
Found at i:121891369 original size:36 final size:36
Alignment explanation
Indices: 121891323--121891405 Score: 107
Period size: 36 Copynumber: 2.3 Consensus size: 36
121891313 TTTTTTAAAA
* *
121891323 TTTT-AAATATTATTTTTAAAATTTTGAATAT-TATT
1 TTTTAAAATATTATTTTTAAAATATTAAATATATA-T
*
121891358 TTTTAAAATATTATTTTTTAAATATTAAATATATAT
1 TTTTAAAATATTATTTTTAAAATATTAAATATATAT
121891394 TTTTAATAATAT
1 TTTTAA-AATAT
121891406 AAAATATTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
35 4 0.10
36 31 0.74
37 7 0.17
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (36 bp):
TTTTAAAATATTATTTTTAAAATATTAAATATATAT
Found at i:121891388 original size:21 final size:21
Alignment explanation
Indices: 121891309--121891413 Score: 98
Period size: 21 Copynumber: 5.2 Consensus size: 21
121891299 TTTATAATAT
*
121891309 ATATT-TTTTTAAAATTTTAA
1 ATATTATTTTTAAAATATTAA
* *
121891329 ATATTATTTTTAAAATTTTGA
1 ATATTATTTTTAAAATATTAA
121891350 ATATTATTTTT----TA--AA
1 ATATTATTTTTAAAATATTAA
*
121891365 ATATTATTTTTTAAATATTAA
1 ATATTATTTTTAAAATATTAA
*
121891386 ATATATATTTTTAATAATATAAA
1 ATAT-TATTTTTAA-AATATTAA
121891409 ATATT
1 ATATT
121891414 TAAATATTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
15 12 0.17
17 1 0.01
19 2 0.03
20 5 0.07
21 31 0.44
22 9 0.13
23 11 0.15
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
ATATTATTTTTAAAATATTAA
Found at i:121891481 original size:19 final size:21
Alignment explanation
Indices: 121891457--121891505 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
121891447 TTATTAGTTT
121891457 TTTAA-TATTTTA-AATATTA
1 TTTAATTATTTTATAATATTA
121891476 TTTAATTTATTTTATAATATT-
1 TTTAA-TTATTTTATAATATTA
*
121891497 TTAAATTAT
1 TTTAATTAT
121891506 GATTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 4 0.15
21 11 0.42
22 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTAATTATTTTATAATATTA
Found at i:121891708 original size:23 final size:23
Alignment explanation
Indices: 121891682--121891735 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
121891672 TAATTTTTTT
121891682 TTTAAAATAATTTAAAAAA-A-ATA
1 TTTAAAAT--TTTAAAAAATATATA
121891705 TTTAAAATTTTAAAAAATATATA
1 TTTAAAATTTTAAAAAATATATA
121891728 TTATAAAA
1 TT-TAAAA
121891736 CATTTCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 9 0.32
22 1 0.04
23 13 0.46
24 5 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
TTTAAAATTTTAAAAAATATATA
Found at i:121891792 original size:9 final size:9
Alignment explanation
Indices: 121891778--121891811 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
121891768 TTAATAACAA
121891778 AAAATAAAT
1 AAAATAAAT
121891787 AAAATAAAT
1 AAAATAAAT
121891796 AAACA-AAAT
1 AAA-ATAAAT
121891805 AAAATAA
1 AAAATAA
121891812 GAAAACATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAATAAAT
Found at i:121891795 original size:13 final size:13
Alignment explanation
Indices: 121891765--121891807 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
121891755 AAGTTTTTTA
* *
121891765 AAATTAATAACAAA
1 AAATAAATAA-AAT
121891779 AAATAAATAAAAT
1 AAATAAATAAAAT
*
121891792 AAATAAACAAAAT
1 AAATAAATAAAAT
121891805 AAA
1 AAA
121891808 ATAAGAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.19
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:121891811 original size:23 final size:23
Alignment explanation
Indices: 121891763--121891807 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
121891753 TCAAGTTTTT
*
121891763 TAAAATTAATAACAAAAAATAAA
1 TAAAATAAATAACAAAAAATAAA
*
121891786 TAAAATAAATAA-ACAAAATAAA
1 TAAAATAAATAACAAAAAATAAA
121891808 ATAAGAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (23 bp):
TAAAATAAATAACAAAAAATAAA
Found at i:121892731 original size:22 final size:21
Alignment explanation
Indices: 121892696--121892771 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
121892686 AAAAGGTATC
* *
121892696 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
121892717 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
121892740 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
121892759 TGC-AATCATATCT
1 TACAAATCATATCT
121892772 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:121892788 original size:35 final size:37
Alignment explanation
Indices: 121892732--121892822 Score: 141
Period size: 35 Copynumber: 2.5 Consensus size: 37
121892722 AATCATATCT
*
121892732 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
121892769 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
121892805 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
121892823 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.38
36 15 0.30
37 10 0.20
38 6 0.12
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:121892801 original size:14 final size:15
Alignment explanation
Indices: 121892746--121892801 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
121892736 AGATTGCATA
121892746 TCATATCTAAGATTG
1 TCATATCTAAGATTG
121892761 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
121892779 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
121892796 -CATATC
1 TCATATC
121892802 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:121892830 original size:17 final size:19
Alignment explanation
Indices: 121892732--121892822 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
121892722 AATCATATCT
121892732 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
121892751 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
121892769 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
121892786 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
121892805 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
121892823 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:121893364 original size:44 final size:44
Alignment explanation
Indices: 121893290--121893754 Score: 707
Period size: 44 Copynumber: 10.5 Consensus size: 44
121893280 ACACGTGAAA
* * *
121893290 GCCAAATCTGCTATATCTTCAATTTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGC--TATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
121893336 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
121893380 GCCAATTCTGCTATTTTCGAATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCG-ATCTGCTCTCTGACAATACAGAGAC
* * *
121893425 GTCAAATCTGCTATCTTCGATCTGCCCTCTGACAATATAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
121893469 GCCAAATCTGCTATCTTCTATCTACTCCCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
121893513 GCCAAATCTACTATCTTCGATCTGC-CTTCTGACAGTACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTC-TCTGACAATACAGAGAC
*
121893557 GCCAAATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
121893601 GCCAAATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
121893645 GCCAAATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
121893689 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
*
121893733 GCCAAATCTGCTATCTTGGATC
1 GCCAAATCTGCTATCTTCGATC
121893755 AGCTTCGATG
Statistics
Matches: 385, Mismatches: 31, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
43 1 0.00
44 331 0.86
45 42 0.11
46 11 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
Found at i:121893861 original size:92 final size:92
Alignment explanation
Indices: 121893694--121893980 Score: 368
Period size: 92 Copynumber: 3.2 Consensus size: 92
121893684 GAGACGCCAA
* * *
121893694 ATCTGCTA--TCTTCGATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTG-CTATCTTGGA-T
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC-ATCTTGGATT
* * *
121893754 CAGCTTCGATGTAAACAAATGAAGATCAG
65 TA-CTTCAATGTAAACAAATGAAGGTCAG
* *
121893783 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTCATCTTAGATTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATTT
* **
121893848 ACTTCAATATAAACACTTGAAGGTCAG
66 ACTTCAATGTAAACAAATGAAGGTCAG
* * *
121893875 ATCTACTATGTTTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATTT
* *
121893940 ACTTCAATGTAAATATATGAAGGTCAG
66 ACTTCAATGTAAACAAATGAAGGTCAG
*
121893967 ATCTGCTATATCTT
1 ATCTGCTATGTCTT
121893981 AGCCTATTAC
Statistics
Matches: 170, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
89 8 0.05
91 17 0.10
92 142 0.84
93 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (92 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATTT
ACTTCAATGTAAACAAATGAAGGTCAG
Found at i:121894128 original size:84 final size:84
Alignment explanation
Indices: 121893987--121894684 Score: 1005
Period size: 84 Copynumber: 8.3 Consensus size: 84
121893977 TCTTAGCCTA
* **
121893987 TTACCCTACTGCTTA-GGGAGTTAAGGCGAGTCTTCAATCCACTCCACTACTGCTTAGGGAGATA
1 TTACCCTACTGCTTAGGGGA-TTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* * *
121894051 AGATTTATAATTTTAACCTG
65 AGATCTACAAATTTAACCTG
* * *
121894071 TTACCCTGCTACTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
*
121894136 GATCTGCAAATTTAACCTG
66 GATCTACAAATTTAACCTG
* * *
121894155 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTACTTAGAGAGA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGA
***
121894220 TAAGATCT-----GGGAACCTG
63 TAAGATCTACAAATTTAACCTG
* * * *
121894237 TTATCCTACTGATTAGGGGATTAAGGCGAGTTTTCGATCTGGTCCACTACTGCTTAGGGAGATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
* *
121894302 GATCTGCAAATTTAACCTA
66 GATCTACAAATTTAACCTG
* * *
121894321 TTA-CCTAACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTAAGGAGATA
1 TTACCCT-ACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
121894385 AGATCTACAAATTTAACCTG
65 AGATCTACAAATTTAACCTG
* *
121894405 TTACCCTACTGCTTGGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
*
121894470 GATCTGCAAATTTAACCTG
66 GATCTACAAATTTAACCTG
* * *
121894489 CTACCCTACCGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
121894554 GATCTACAAATTTAACCTG
66 GATCTACAAATTTAACCTG
*
121894573 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAAATAA
1 TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
*
121894638 GATCTGCAAATTTAACCTG
66 GATCTACAAATTTAACCTG
121894657 TTACCCTACTGCTTAGGGGATTAAGGCG
1 TTACCCTACTGCTTAGGGGATTAAGGCG
121894685 CTGAATTTTG
Statistics
Matches: 550, Mismatches: 53, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
79 33 0.06
81 1 0.00
82 35 0.06
83 3 0.01
84 436 0.79
85 8 0.01
87 34 0.06
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
GATCTACAAATTTAACCTG
Found at i:121894455 original size:41 final size:41
Alignment explanation
Indices: 121894410--121894627 Score: 124
Period size: 41 Copynumber: 5.2 Consensus size: 41
121894400 ACCTGTTACC
121894410 CTACTGCTTGGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTGGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * * * * *
121894451 CTACTACTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGCTACC-
1 CTACTGCTT-GGGGGATTAAG----GCGAGTCTTCGATCTGCT-CCA
* * *
121894494 CTACCGCTTAGGGGATTAAGGTGAGTCTTCGATCTGCTCCA
1 CTACTGCTTGGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * * *** ** * *
121894535 CTACTGCTTAGGGAGA-TAAGATCTACAAATTTAACCTGTTACC-
1 CTACTGCTT-GGGGGATTAAG-GCGA-GTCTTCGATCTGCT-CCA
*
121894578 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTGGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
121894619 CTACTGCTT
1 CTACTGCTT
121894628 AGGGAAATAA
Statistics
Matches: 122, Mismatches: 39, Indels: 32
0.63 0.20 0.17
Matches are distributed among these distances:
39 3 0.02
40 6 0.05
41 46 0.38
42 20 0.16
43 37 0.30
44 6 0.05
45 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (41 bp):
CTACTGCTTGGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
Found at i:121895666 original size:14 final size:14
Alignment explanation
Indices: 121895632--121895693 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 14
121895622 GCCTCTCCAT
121895632 TTTTCTTTTTTTTC
1 TTTTCTTTTTTTTC
* *
121895646 --CTCTTTTTTAT-
1 TTTTCTTTTTTTTC
121895657 TTTTCTTTTTTTTC
1 TTTTCTTTTTTTTC
* *
121895671 TTTTC-TGTTTTCC
1 TTTTCTTTTTTTTC
121895684 TTTT-TTTTTT
1 TTTTCTTTTTT
121895694 AAATAGAAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
12 9 0.24
13 23 0.62
14 5 0.14
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTCTTTTTTTTC
Found at i:121895672 original size:22 final size:22
Alignment explanation
Indices: 121895630--121895691 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
121895620 TGGCCTCTCC
*
121895630 ATTTTTCTTTTTTTTCCTCTTTTTT
1 ATTTTTC-TTTTTTT--TCTTTTCT
121895655 ATTTTTCTTTTTTTTCTTTTCT
1 ATTTTTCTTTTTTTTCTTTTCT
* *
121895677 GTTTTCCTTTTTTTT
1 ATTTTTCTTTTTTTT
121895692 TTAAATAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 20 0.59
24 7 0.21
25 7 0.21
ACGTcount: A:0.03, C:0.15, G:0.02, T:0.81
Consensus pattern (22 bp):
ATTTTTCTTTTTTTTCTTTTCT
Found at i:121900753 original size:23 final size:22
Alignment explanation
Indices: 121900710--121900767 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
121900700 AAAAGGTATC
* *
121900710 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
121900731 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
121900754 TGCATATCATATCT
1 TACAAATCATATCT
121900768 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:121900770 original size:19 final size:19
Alignment explanation
Indices: 121900746--121900847 Score: 118
Period size: 19 Copynumber: 5.9 Consensus size: 19
121900736 AATCATATCT
121900746 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
121900765 TCTAAGATTGCA-ATC---
1 TCTAAGATTGCATATCATA
121900780 T-T---ATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
121900794 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
121900811 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
121900830 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
121900848 TAAAGATTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
11 9 0.13
14 2 0.03
15 2 0.03
17 16 0.23
18 7 0.10
19 35 0.49
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:121900826 original size:14 final size:15
Alignment explanation
Indices: 121900789--121900826 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
121900779 CTTATTGCAA
121900789 TCATATCTAAGATTG
1 TCATATCTAAGATTG
121900804 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
121900821 -CATATC
1 TCATATC
121900827 ACATCTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:121901059 original size:18 final size:18
Alignment explanation
Indices: 121901033--121901083 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
121901023 TCTACAATAT
*
121901033 AAAACTTAAAAAAAAAGA
1 AAAAATTAAAAAAAAAGA
*
121901051 AAAAATTAAAGAAAAAGA
1 AAAAATTAAAAAAAAAGA
121901069 AAAAAGTTAAAAAAA
1 AAAAA-TTAAAAAAA
121901084 TGTAAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 21 0.72
19 8 0.28
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.12
Consensus pattern (18 bp):
AAAAATTAAAAAAAAAGA
Found at i:121902261 original size:21 final size:23
Alignment explanation
Indices: 121902237--121902283 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
121902227 AATATGCTGT
*
121902237 AAATTGAAAGTTTA-TGATAGA-
1 AAATTGAAAGGTTATTGATAGAG
121902258 AAA-TGAAAGGTTATTGATAGAG
1 AAATTGAAAGGTTATTGATAGAG
121902280 AAAT
1 AAAT
121902284 CACTTTTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 9 0.41
21 10 0.45
22 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.30
Consensus pattern (23 bp):
AAATTGAAAGGTTATTGATAGAG
Found at i:121902264 original size:20 final size:22
Alignment explanation
Indices: 121902241--121902283 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
121902231 TGCTGTAAAT
*
121902241 TGAAAGTTTA-TGATAGA-AAA
1 TGAAAGGTTATTGATAGAGAAA
121902261 TGAAAGGTTATTGATAGAGAAA
1 TGAAAGGTTATTGATAGAGAAA
121902283 T
1 T
121902284 CACTTTTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (22 bp):
TGAAAGGTTATTGATAGAGAAA
Found at i:121903103 original size:29 final size:29
Alignment explanation
Indices: 121903061--121903156 Score: 174
Period size: 29 Copynumber: 3.3 Consensus size: 29
121903051 TGTGTACCAA
121903061 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
121903090 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
* *
121903119 GTGAAAAGGGATAGTTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
121903148 GTGAAAAGG
1 GTGAAAAGG
121903157 AAAGGTATAC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.24
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:121903186 original size:33 final size:33
Alignment explanation
Indices: 121903149--121903355 Score: 166
Period size: 33 Copynumber: 6.3 Consensus size: 33
121903139 CTATCGAATG
*
121903149 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
** * *
121903182 TGAAAAGGTTATGTACACTTTGTGTATA-CACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
** * * * * *
121903214 TGAAAAGGTTATGCACACTTTGTGTGTA-CATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* *
121903246 TGTAAAGGTAAGGTATACTTTGTGTATACCACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * * * *
121903279 AGAAAAGAAAAGGTATATTTTGTGTGTACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * * * * *
121903312 TGAAAAGGAAATGTACACCTTGAGTGTACTACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
*
121903345 AGAAAAGGAAA
1 TGAAAAGGAAA
121903356 TATCTATCGA
Statistics
Matches: 141, Mismatches: 32, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
32 54 0.38
33 87 0.62
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACT
Found at i:121903223 original size:32 final size:33
Alignment explanation
Indices: 121903165--121903285 Score: 147
Period size: 32 Copynumber: 3.7 Consensus size: 33
121903155 GGAAAGGTAT
*
121903165 ACTTTGTGTATACCACATGAAAAGGTTATGTAC
1 ACTTTGTGTATACCACTTGAAAAGGTTATGTAC
*
121903198 ACTTTGTGTATA-CACTTGAAAAGGTTATGCAC
1 ACTTTGTGTATACCACTTGAAAAGGTTATGTAC
* * * * * *
121903230 ACTTTGTGTGTA-CATTTGTAAAGGTAAGGTAT
1 ACTTTGTGTATACCACTTGAAAAGGTTATGTAC
*
121903262 ACTTTGTGTATACCACTAGAAAAG
1 ACTTTGTGTATACCACTTGAAAAG
121903286 AAAAGGTATA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
32 54 0.73
33 20 0.27
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (33 bp):
ACTTTGTGTATACCACTTGAAAAGGTTATGTAC
Found at i:121904790 original size:46 final size:46
Alignment explanation
Indices: 121904738--121905047 Score: 435
Period size: 46 Copynumber: 7.0 Consensus size: 46
121904728 AGTGTGCTCT
121904738 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
121904784 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
121904830 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
121904876 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
121904922 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC---G--A-
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
121904962 C----ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
121905004 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
121905048 TCATGTCAAA
Statistics
Matches: 242, Mismatches: 11, Indels: 22
0.88 0.04 0.08
Matches are distributed among these distances:
36 30 0.12
39 1 0.00
41 2 0.01
43 1 0.00
45 1 0.00
46 207 0.86
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:121908083 original size:24 final size:24
Alignment explanation
Indices: 121908037--121908092 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
121908027 GAGAAAAGCA
121908037 AGAT-AAGAAAGAAAAAAAGGGAT
1 AGATAAAGAAAGAAAAAAAGGGAT
* * * *
121908060 TGATGAAGAAAGAAAAACATGGAT
1 AGATAAAGAAAGAAAAAAAGGGAT
121908084 AGATAAAGA
1 AGATAAAGA
121908093 TGAGTGAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 3 0.11
24 24 0.89
ACGTcount: A:0.61, C:0.02, G:0.25, T:0.12
Consensus pattern (24 bp):
AGATAAAGAAAGAAAAAAAGGGAT
Found at i:121908119 original size:2 final size:2
Alignment explanation
Indices: 121908112--121908140 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121908102 CAGGTGCAGC
121908112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121908141 GGGGGAGGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121913024 original size:18 final size:17
Alignment explanation
Indices: 121912997--121913031 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
121912987 GATGTTTCAA
121912997 ATTTAAATTTTATTATTT
1 ATTTAAATTTT-TTATTT
*
121913015 ATTTATATTTTTTATTT
1 ATTTAAATTTTTTATTT
121913032 TTAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTAAATTTTTTATTT
Found at i:121917344 original size:17 final size:19
Alignment explanation
Indices: 121917324--121917358 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
121917314 ATTTAATCTT
121917324 AAATT-TAAA-AAAAAAAC
1 AAATTCTAAAGAAAAAAAC
121917341 AAATTCTAAAGAAAAAAA
1 AAATTCTAAAGAAAAAAA
121917359 TAAAACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (19 bp):
AAATTCTAAAGAAAAAAAC
Found at i:121926403 original size:29 final size:29
Alignment explanation
Indices: 121926339--121926403 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
121926329 GAATTTTTCG
*
121926339 AAAATTT-AGAATTTAGCTTTTATATTTT
1 AAAATTTAAGAATTTAGCTTTTAGATTTT
* **
121926367 TATTTTTAAGAATTTA-CTTTTTAGATTTT
1 AAAATTTAAGAATTTAGC-TTTTAGATTTT
121926396 AAAATTTA
1 AAAATTTA
121926404 GGTCCAACTA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
28 5 0.18
29 23 0.82
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (29 bp):
AAAATTTAAGAATTTAGCTTTTAGATTTT
Found at i:121927108 original size:25 final size:27
Alignment explanation
Indices: 121927073--121927131 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
121927063 TTTTAATAAT
* *
121927073 TTATGAAAATTGAATTAAATCAAAATT-
1 TTAT-AAATTTGAATAAAATCAAAATTC
* *
121927100 TTATAAATTTGTATAAAATTAAAATTC
1 TTATAAATTTGAATAAAATCAAAATTC
121927127 TTATA
1 TTATA
121927132 TTGGATTGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.42
Consensus pattern (27 bp):
TTATAAATTTGAATAAAATCAAAATTC
Found at i:121930056 original size:130 final size:130
Alignment explanation
Indices: 121929843--121930093 Score: 439
Period size: 130 Copynumber: 1.9 Consensus size: 130
121929833 AGGTGCATCA
**
121929843 GTGTATGTATGCATATATATTCATGAAAGCTGCACATGAACAAACAAATATAACCAGGTTACCTC
1 GTGTATGTATGCATATATACACATGAAAGCTGCACATGAACAAACAAATATAACCAGGTTACCTC
*
121929908 CCAAGCAGCCAAATTGGGCCTTAAGCTTAATAAACTATAGAAACCATATATATATACACACACAC
66 CCAAGCAGCCAAATTGGGCCTTAAGCTTAATAAACTATAAAAACCATATATATATACACACACAC
* *
121929973 GTGTATGTATGTATATATACACATGAAAGCTGCACATGAACCAACAAATATAACCAGGTTACCTC
1 GTGTATGTATGCATATATACACATGAAAGCTGCACATGAACAAACAAATATAACCAGGTTACCTC
* *
121930038 CCAAGTAGCCAAATTGGGCCTTAAGCTTAATAAACTTTAAAAACCATATATATATA
66 CCAAGCAGCCAAATTGGGCCTTAAGCTTAATAAACTATAAAAACCATATATATATA
121930094 GCAAGATTCT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
130 114 1.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (130 bp):
GTGTATGTATGCATATATACACATGAAAGCTGCACATGAACAAACAAATATAACCAGGTTACCTC
CCAAGCAGCCAAATTGGGCCTTAAGCTTAATAAACTATAAAAACCATATATATATACACACACAC
Done.