Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 405 of 410
Found at i:122144139 original size:24 final size:24
Alignment explanation
Indices: 122144087--122144143 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
122144077 AACAATGATG
*
122144087 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
122144111 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
122144135 GAATAATAA
1 GAATAATAA
122144144 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:122144353 original size:22 final size:24
Alignment explanation
Indices: 122144290--122144354 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
122144280 CGTGATAATA
*
122144290 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
122144315 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
122144338 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
122144355 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:122144428 original size:24 final size:24
Alignment explanation
Indices: 122144374--122144431 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
122144364 TAGAAAAAAT
* *
122144374 ATATATATAAATAATATAATATTAA
1 ATATATAT-AATAAAATAATATAAA
* *
122144399 AGATATATAATAAAATAGTATAAA
1 ATATATATAATAAAATAATATAAA
122144423 ATATATATA
1 ATATATATA
122144432 TATATACGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
ATATATATAATAAAATAATATAAA
Found at i:122144504 original size:22 final size:22
Alignment explanation
Indices: 122144440--122144511 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
122144430 TATATATACG
*
122144440 TAATATAA-ATTTA-AAATATA
1 TAATATAATATTAAGAAATATA
* *
122144460 CCTAATATATTA-AAAGAATATATA
1 --TAATATAATATTAAGAA-ATATA
122144484 TAATATAATATTAAGAAATATAA
1 TAATATAATATTAAGAAATAT-A
122144507 TAATA
1 TAATA
122144512 ACAAAAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
22 21 0.52
23 14 0.35
24 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (22 bp):
TAATATAATATTAAGAAATATA
Found at i:122144509 original size:23 final size:25
Alignment explanation
Indices: 122144466--122144511 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
122144456 TATACCTAAT
122144466 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
122144491 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
122144512 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:122145030 original size:30 final size:30
Alignment explanation
Indices: 122144994--122145142 Score: 244
Period size: 30 Copynumber: 5.0 Consensus size: 30
122144984 TAGGTACAAG
* *
122144994 TGGTGGTGGAGAAGGTGTAGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* * *
122145024 TGGTGGTGAAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
122145054 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
122145084 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
122145114 TGGTGGTGGAAAAGGAGTGGCTAGTGGAG
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAG
122145143 AAAAGTTTAA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 110 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:122147223 original size:18 final size:19
Alignment explanation
Indices: 122147185--122147228 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
122147175 ATTTTTTTTG
*
122147185 TAATTTTTACATATTTCTA
1 TAATTTTTACATATTTATA
*
122147204 TAATTTTTATATA-TTATA
1 TAATTTTTACATATTTATA
122147222 TAATTTT
1 TAATTTT
122147229 ATAAACTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TAATTTTTACATATTTATA
Found at i:122147561 original size:17 final size:18
Alignment explanation
Indices: 122147523--122147561 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
122147513 AATATATTGT
* *
122147523 ATTATGTTATTTTTATAC
1 ATTATGTAATTTATATAC
122147541 ATTATGTAATTTATA-AC
1 ATTATGTAATTTATATAC
122147558 ATTA
1 ATTA
122147562 AAAATTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTATGTAATTTATATAC
Found at i:122149127 original size:31 final size:31
Alignment explanation
Indices: 122149089--122149147 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
122149079 TTAATTTGAC
* *
122149089 TAAATTTAGTT-TCTGTGCTTTTCGAATTGGT
1 TAAATTTAGTTCT-TGTACTTTTCAAATTGGT
122149120 TAAATTTAGTTCTTGTACTTTTCAAATT
1 TAAATTTAGTTCTTGTACTTTTCAAATT
122149148 TTGAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.53
Consensus pattern (31 bp):
TAAATTTAGTTCTTGTACTTTTCAAATTGGT
Found at i:122149574 original size:16 final size:15
Alignment explanation
Indices: 122149553--122149587 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
122149543 ATATTATCCC
122149553 TTGCTCTATACTTCT
1 TTGCTCTATACTTCT
122149568 ATTGCTCTATACTTCT
1 -TTGCTCTATACTTCT
122149584 TTGC
1 TTGC
122149588 AGAGCCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.14, C:0.26, G:0.09, T:0.51
Consensus pattern (15 bp):
TTGCTCTATACTTCT
Found at i:122154605 original size:14 final size:14
Alignment explanation
Indices: 122154582--122154622 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
122154572 AAACAGTACC
*
122154582 AAAACAGTAAAAAA
1 AAAACTGTAAAAAA
122154596 AAAACTGTAAAAAA
1 AAAACTGTAAAAAA
122154610 AAAAGCTG-AAAAA
1 AAAA-CTGTAAAAA
122154623 CGGAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 22 0.88
15 3 0.12
ACGTcount: A:0.73, C:0.07, G:0.10, T:0.10
Consensus pattern (14 bp):
AAAACTGTAAAAAA
Found at i:122154696 original size:26 final size:27
Alignment explanation
Indices: 122154659--122154727 Score: 122
Period size: 26 Copynumber: 2.6 Consensus size: 27
122154649 ATGTGGGTGC
*
122154659 CAGAGGCGGCACCAGTGTTGCCTCTGG
1 CAGAGGCGGCACCAGTGTTGCCTCTGA
122154686 CAGA-GCGGCACCAGTGTTGCCTCTGA
1 CAGAGGCGGCACCAGTGTTGCCTCTGA
122154712 CAGAGGCGGCACCAGT
1 CAGAGGCGGCACCAGT
122154728 TGTGTGGGTC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 25 0.62
27 15 0.38
ACGTcount: A:0.19, C:0.30, G:0.35, T:0.16
Consensus pattern (27 bp):
CAGAGGCGGCACCAGTGTTGCCTCTGA
Found at i:122154850 original size:12 final size:10
Alignment explanation
Indices: 122154821--122154863 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
122154811 GAAGAAAATA
122154821 AAAGGA-AAG
1 AAAGGAGAAG
122154830 AAAGGAGAAG
1 AAAGGAGAAG
122154840 AGAAGGAAGAA-
1 A-AAGG-AGAAG
122154851 AAAGGAGAAG
1 AAAGGAGAAG
122154861 AAA
1 AAA
122154864 AAAAGAAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 10 0.33
10 11 0.37
11 5 0.17
12 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (10 bp):
AAAGGAGAAG
Found at i:122154856 original size:21 final size:20
Alignment explanation
Indices: 122154822--122154861 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
122154812 AAGAAAATAA
*
122154822 AAGGAAAGAAAGGAGAAGAG
1 AAGGAAAAAAAGGAGAAGAG
122154842 AAGGAAGAAAAAGGAGAAGA
1 AAGGAA-AAAAAGGAGAAGA
122154862 AAAAAAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (20 bp):
AAGGAAAAAAAGGAGAAGAG
Found at i:122159216 original size:33 final size:33
Alignment explanation
Indices: 122159159--122159227 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
122159149 GAGTACTGCA
*
122159159 GTGGATACGGGCCGGGGGCAGTGCTATAATGCG
1 GTGGATACGGGCCGGGAGCAGTGCTATAATGCG
* **
122159192 GTGGATATGGGCCGGGAG-AGGTGCTATGCTGCG
1 GTGGATACGGGCCGGGAGCA-GTGCTATAATGCG
122159225 GTG
1 GTG
122159228 TGTACGACCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.16, C:0.16, G:0.48, T:0.20
Consensus pattern (33 bp):
GTGGATACGGGCCGGGAGCAGTGCTATAATGCG
Found at i:122159392 original size:72 final size:72
Alignment explanation
Indices: 122159275--122159415 Score: 221
Period size: 72 Copynumber: 2.0 Consensus size: 72
122159265 GCCCCTCGAT
* *
122159275 GAGCCCGAGAAATTGTCATTGCCCGCAAAATCTGGATGATAAGAAGTATCAGCCGAA-AGTGAAT
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAATA-TGAAT
122159339 GCGATGAC
65 GCGATGAC
* * *
122159347 GAGCCCGAGAAATAGTCATTGCCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATATGAATG
1 GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAATATGAATG
122159412 CGAT
66 CGAT
122159416 CGCTCGGACT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 62 0.98
73 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.21
Consensus pattern (72 bp):
GAGCCCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAATATGAATG
CGATGAC
Found at i:122161301 original size:12 final size:13
Alignment explanation
Indices: 122161278--122161308 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
122161268 ATAAGTAAAA
122161278 TATTTTTGTATAT
1 TATTTTTGTATAT
122161291 TATTTTT-TATAT
1 TATTTTTGTATAT
122161303 TATTTT
1 TATTTT
122161309 AGCAAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
TATTTTTGTATAT
Found at i:122161541 original size:146 final size:145
Alignment explanation
Indices: 122161278--122162322 Score: 772
Period size: 154 Copynumber: 7.2 Consensus size: 145
122161268 ATAAGTAAAA
* * * * * *
122161278 TATTTTTGTATATTATTTTTTATATTATTTTAGCA-AAAATGTTTTAAATGTATTATGTAAGTAT
1 TATTTTCGTATTTTATTTTTAATATTATTTTAGCACAAAATGTTTCAAATATATTATTTAAGTAT
* *
122161342 TTTTTATATTAATTTAATAAA-AACACTGATTTTGACACTTT-TTCG-TATTTTTTTCGTATCTT
66 TTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGATA-TTTTTTCGTATATT
122161404 -TTTTTT-AAATATAT
130 ATTTTTTAAAATATAT
* * * * * * *
122161418 TACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAGTACATAATATTTTAAATATATTATTTA
1 TATTTTCGTA-T-TTTATTTTTAATA---TTATTTTAGCACAAAATGTTTCAAATATATTATTTA
* ** **
122161483 AGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTC-ATATTTTTTCGT
61 AGTATTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACTTTATTCGATATTTTTTCGT
122161546 ATATTATTTTTTAAAATATAT
125 ATATTATTTTTTAAAATATAT
* * *
122161567 TATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATTA
1 TATTTTCGTATTTTATTTTTAATATTATTTTAGCACAAAATGTTTCAAA--TA-TA--T-TA-T-
* * *
122161632 TGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCG-TATTTTT
58 T-TAAGT-ATTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGATATTTTT
* *
122161696 TTGTATCTTATTTTTTAAAATATAT
121 TCGTATATTATTTTTTAAAATATAT
* * * * * *
122161721 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCATTA
1 TATTTTCGTATTTTATTT-TTAATATTATTTTAGCACAAAATGTTTCAAATATATTATTTAAGTA
* *
122161786 TTTTTTATATT-TTTTCAATAAATATCCCTGATTTT-AGCACTTTATTCG-TATTTTTTTCGTAT
65 TTTTTTATATTAATTT-AATAAATAACCCTGATTTTGA-CACTTTATTCGATA-TTTTTTCGTAT
122161848 ATTATTTTTT-AAA-ATA-
127 ATTATTTTTTAAAATATAT
* *** * * * *
122161864 TA---T--TA---T-TTTTT-ATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTGT
1 TATTTTCGTATTTTATTTTTAATATTATTTTAGCACAAAATGTTTCAAATATATTATTTAAGTAT
* * * *
122161919 TTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTTA
66 TT-TTTATATTAA------TTTAATAAATAACCCTGATTTTGACACTTTATTCG--A---TATT-
122161984 TTTTCGTATATTA-TTTTTAAAATATAT
118 TTTTCGTATATTATTTTTTAAAATATAT
* * * * *
122162011 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTT-TTAATATTATTTTAGCACAAAATGTTTCAAATATATTATTTAAGTA
**
122162076 TTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCG-TATTTTTTCGTATAT
65 TTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACTTTATTCGATATTTTTTCGTATAT
122162139 TA-TTTTTAAAATATAT
129 TATTTTTTAAAATATAT
* * * *
122162155 TATTTT-G----GTA----T--T-TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAAGT-T
1 TATTTTCGTATTTTATTTTTAATATTATTTTAGCACAAAATGTTTCAAATATATTATTTAAGTAT
* * * * * * *
122162207 TTTTTATATTAATTTAATAAGTAA-CCTGACTTTGGCACCTTGTTCGTATTTTTTTATTTTCGGA
66 TTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCG-A---TATT-TTTTCGTA
* * * *
122162271 TTTTATTTTTTTAATTATAC
126 TATTATTTTTTAAAATATAT
* *
122162291 TATTTTCATATTTTATTTTTTATATTATTTTA
1 TATTTTCGTATTTTATTTTTAATATTATTTTA
122162323 ACAAAAAACT
Statistics
Matches: 722, Mismatches: 104, Indels: 150
0.74 0.11 0.15
Matches are distributed among these distances:
129 17 0.02
130 22 0.03
131 34 0.05
132 37 0.05
133 10 0.01
134 7 0.01
135 12 0.02
136 17 0.02
138 2 0.00
139 28 0.04
140 13 0.02
141 3 0.00
142 9 0.01
143 3 0.00
144 67 0.09
145 74 0.10
146 69 0.10
147 46 0.06
148 21 0.03
149 19 0.03
150 5 0.01
151 31 0.04
152 5 0.01
153 6 0.01
154 86 0.12
155 29 0.04
156 3 0.00
157 10 0.01
158 37 0.05
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (145 bp):
TATTTTCGTATTTTATTTTTAATATTATTTTAGCACAAAATGTTTCAAATATATTATTTAAGTAT
TTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTATTCGATATTTTTTCGTATATTA
TTTTTTAAAATATAT
Found at i:122161798 original size:299 final size:294
Alignment explanation
Indices: 122161277--122162173 Score: 1048
Period size: 290 Copynumber: 3.1 Consensus size: 294
122161267 AATAAGTAAA
* * *
122161277 ATATT-TTTGTATATTATTTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATG-TAA-
1 ATATTATTTTTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTTAAT
* *
122161338 GT-A---TTTTTTATATTAATTTAATAAA-AACACTGATTTTGACAC-TTTTTCGTATTTTTTTC
66 GTAATGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTTTA
* * *
122161397 GTATCTT-TTTTTT-AAATATATTACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTAC
131 GTATCTTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTAATA---TTATTTTAGTAC
* * * * **
122161459 ATAATATTTTAAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAG
191 ATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAG
*
122161524 CACTTTATTCATATTTTTTCGTATATTATTTTTTAAAAT
256 CACTTTATTCGTATTTTTTCGTATATTATTTTTTAAAAT
122161563 ATATTATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAT
1 ATATTATTTT--TATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGT-T
*
122161628 ATTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATT
63 A--ATGTAA-TGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATT
*
122161693 TTTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTA
125 TTTTTAGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTA
* * * *
122161757 CATAATGTTTCAAATGTATTATTTCATTATTTTTTATATTTTTTCAATAAATATCCCTGATTTTA
190 CATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTA
122161822 GCACTTTATTCGTATTTTTTTCGTATATTATTTTTT--AA-
255 GCACTTTATTCGTA-TTTTTTCGTATATTATTTTTTAAAAT
***
122161860 A-A-TA----TA--TTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAATG---TA--TTAAT
1 ATATTATTTTTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTTAAT
* * * *
122161912 -TAACTGTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAA
66 GTAA-TGTTTTTTTATATTAA------TTTAATAAATAACCCTGATTTTGACACTTTTTTCGT-A
* * *
122161976 TTTTTTTATTTTCGTATATTATTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATT
123 TTTTTTTAGTATC-T-TA-T-TTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATT
*
122162041 TTAGTACATAATGCTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTG
184 TTAGTACATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTG
122162106 ATTTTAGCACTTTATTCGTATTTTTTCGTATATTA-TTTTTAAAAT
249 ATTTTAGCACTTTATTCGTATTTTTTCGTATATTATTTTTTAAAAT
122162151 ATATTATTTTGGTATTTTATTTT
1 ATATTATTTT--TATTTTATTTT
122162174 AGCATAAAAT
Statistics
Matches: 529, Mismatches: 37, Indels: 75
0.83 0.06 0.12
Matches are distributed among these distances:
278 17 0.03
279 2 0.00
281 2 0.00
282 1 0.00
284 35 0.07
285 8 0.02
286 8 0.02
287 40 0.08
288 7 0.01
289 43 0.08
290 147 0.28
291 1 0.00
292 3 0.01
293 2 0.00
294 1 0.00
295 4 0.01
296 2 0.00
297 1 0.00
298 2 0.00
299 81 0.15
300 42 0.08
301 36 0.07
302 27 0.05
303 17 0.03
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.55
Consensus pattern (294 bp):
ATATTATTTTTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTTAAT
GTAATGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTTTA
GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATAAT
GTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTT
TATTCGTATTTTTTCGTATATTATTTTTTAAAAT
Found at i:122161815 original size:145 final size:145
Alignment explanation
Indices: 122161654--122162172 Score: 539
Period size: 145 Copynumber: 3.6 Consensus size: 145
122161644 TTTATACTAA
* *
122161654 TTTAATAAATAACCCTGATTTT-GACACTTTTTTCGTATTTTTTT-GTATCTTATTTTTTAAAAT
1 TTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTATTTTTTTAGTATATTATTTTTTAAAAT
122161717 ATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTC
65 ATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTC
122161782 ATTATTTTTTATATTT
130 ATTATTTTTTATATTT
* *
122161798 TTTCAATAAATATCCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAAT
1 TTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTAGTATATTATTTTTTAAAAT
* * * **** * * * *
122161863 ATATTATTTT-TTATATTATTT-TAGCA-A--AAAAAAATTCA-AATGTATT--AAT-TAACTGT
65 ATATTATTTTCGTATTTTATTTCT-TCATATTATTTTAGTACATAATGT-TTCAAATGT-ATTAT
* * * **
122161919 TTCTTTA-TATTAAGGGTTT
127 TTCATTATTTTTTA-TATTT
* * *
122161938 TTTACTAAATAACCCTGATTTT-GATACTTTCTTCGTAATTTTTTTATTTTCGTATATTA-TTTT
1 TTTAATAAATAACCCTGATTTTAG-CACTTTATTCGT-ATTTTTTTA-----GTATATTATTTTT
* *
122162001 TAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTAT
59 TAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTAT
* *
122162066 TATTTAAGTATTTTTTATATTTT
124 TATTTCATTATTTTTTATA-TTT
*
122162089 TTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTTCGTATATTA-TTTTTAAAATA
1 TTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTAGTATATTATTTTTTAAAATA
*
122162152 TATTATTTTGGTATTTTATTT
66 TATTATTTTCGTATTTTATTT
122162173 TAGCATAAAA
Statistics
Matches: 300, Mismatches: 49, Indels: 52
0.75 0.12 0.13
Matches are distributed among these distances:
138 1 0.00
139 32 0.11
140 26 0.09
141 5 0.02
142 7 0.02
144 64 0.21
145 66 0.22
146 31 0.10
148 7 0.02
149 10 0.03
150 11 0.04
151 39 0.13
152 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (145 bp):
TTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTAGTATATTATTTTTTAAAATA
TATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCA
TTATTTTTTATATTT
Found at i:122162036 original size:158 final size:143
Alignment explanation
Indices: 122161866--122162173 Score: 348
Period size: 144 Copynumber: 2.0 Consensus size: 143
122161856 TTAAAATATA
*
122161866 TTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTGTTTCTTTATATTA
1 TTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTATTT-TTTATA-T-
* * *
122161931 AGGGTTTTTTACTAAATAACCCTGATTTT-GATACTTTCTTCGTAATTTTTTTATTTTCGTATAT
63 ----TTTTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGT-A-----TT-TTTTCGTATAT
122161995 TATTTTTAAAATATATTATTTTCGTATT
116 TATTTTTAAAATATATTATTTTCGTATT
* * * *** * *
122162023 TTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAGTATTTTTTATATTT
1 TTATTT-TTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTATTTTTTATATTT
122162088 TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTCGTATATTATTTTTAAAATAT
65 TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTCGTATATTATTTTTAAAATAT
*
122162153 ATTATTTTGGTATT
130 ATTATTTTCGTATT
122162167 TTATTTT
1 TTATTTT
122162174 AGCATAAAAT
Statistics
Matches: 136, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
143 1 0.01
144 44 0.32
145 2 0.01
150 1 0.01
151 34 0.25
152 1 0.01
156 1 0.01
157 12 0.09
158 40 0.29
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (143 bp):
TTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTATTTTTTATATTTT
TTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTCGTATATTATTTTTAAAATATA
TTATTTTCGTATT
Found at i:122162061 original size:290 final size:280
Alignment explanation
Indices: 122161286--122162322 Score: 1016
Period size: 290 Copynumber: 3.6 Consensus size: 280
122161276 AATATTTTTG
* *** * *
122161286 TATATTATTTT-TTATATTATTTTAGC-AAAAATGTTTTAAATGTATT-ATGTAAGTATTTTTTA
1 TATATTATTTTGGTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAAT-TAAGT-TTCTTTA
* *
122161348 TATTAATTTAATAAA-AACACTGATTTTGACACTTT-TTCGTA----TTT-TTTTCGTATCTT-T
64 TATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTATATTAT
* * * * * ** *
122161405 TTTTTAAATATATTACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTACATAATATTTT
129 TTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTTATA---TTATTTTAGTACATAATGCTTC
* * ** *
122161469 AAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTC
189 AAATGTATTATTTAAGTATTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTC
*
122161534 ATATTTTTTCGTATATTATTTTTTAAAATA
254 GTATTTTTTCGTATATTA-TTTTT-AAA-A
** ***
122161564 TATTATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATA
1 TA-TA---T--TA---T-TTTGGTATATTATTTTAGCAAAAAAAAATTCAAATG---TA--T-TA
* * *
122161629 TTATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTT
50 --AT-TAA--GTTTCTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTT
* * *
122161694 TTTT-GTATC-T-TA-T-TTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTA
110 TTTTATTTTCGTATATTATTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTA
* * * *
122161754 GTACATAATGTTTCAAATGTATTATTTCATTATTTTTTATATTTTTTCAATAAATATCCCTGATT
175 GTACATAATGCTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTCAATAAATAACCCTGATT
122161819 TTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAA
240 TTAGCACTTTATTCGTA-TTTTTTCGTATATTA-TTTTTAAAA
*
122161862 TATATTATTTT-TTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAACTGTTTCTTTA
1 TATATTATTTTGGTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAA--GTTTCTTTA
* *
122161926 TATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTTATTTTCGT
64 TATTAA------TTTAATAAATAACCCTGATTTTGACACTTTCTTCGT-ATTTTTTTATTTTCGT
122161991 ATATTATTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCT
122 ATATTATTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCT
*
122162056 TCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTAT
187 TCAAATGTATTATTTAAGTATTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTAT
122162121 TCGTATTTTTTCGTATATTATTTTTAAAA
252 TCGTATTTTTTCGTATATTATTTTTAAAA
* * *** * *
122162150 TATATTATTTTGGTATTTTATTTTAGCATAAAATCTTTCAAATGTATTATTTAAGTTTTTTTATA
1 TATATTATTTTGGTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAAGTTTCTTTATA
* * * * * * *
122162215 TTAATTTAATAAGTAA-CCTGACTTTGGCACCTTGTTCGTATTTTTTTATTTTCGGATTTTATTT
66 TTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTATATTA-TT
* * * *
122162279 TTTTAATTATACTATTTTCATATTTTATTT-TTTATATTATTTTA
130 TTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTA
122162323 ACAAAAAACT
Statistics
Matches: 654, Mismatches: 60, Indels: 89
0.81 0.07 0.11
Matches are distributed among these distances:
278 19 0.03
279 38 0.06
280 46 0.07
281 12 0.02
282 2 0.00
284 37 0.06
285 8 0.01
286 3 0.00
287 45 0.07
288 28 0.04
289 67 0.10
290 138 0.21
292 2 0.00
293 2 0.00
294 1 0.00
295 1 0.00
296 1 0.00
297 2 0.00
298 3 0.00
299 88 0.13
300 42 0.06
301 27 0.04
302 11 0.02
303 23 0.04
304 1 0.00
305 1 0.00
306 6 0.01
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.55
Consensus pattern (280 bp):
TATATTATTTTGGTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAATTAAGTTTCTTTATA
TTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTATATTATTT
TTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTA
TTATTTAAGTATTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTT
TTCGTATATTATTTTTAAAA
Found at i:122162302 original size:25 final size:25
Alignment explanation
Indices: 122162274--122162321 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
122162264 TTTCGGATTT
122162274 TATTTT-TTTAATTATACTATTTTCA
1 TATTTTATTT-ATTATACTATTTTCA
* *
122162299 TATTTTATTTTTTATATTATTTT
1 TATTTTATTTATTATACTATTTT
122162322 AACAAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (25 bp):
TATTTTATTTATTATACTATTTTCA
Found at i:122162781 original size:14 final size:14
Alignment explanation
Indices: 122162762--122162824 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
122162752 AAAAAATTAC
122162762 CTTTTTCTTTCCTT
1 CTTTTTCTTTCCTT
* *
122162776 CTTTTTCCTTCCCT
1 CTTTTTCTTTCCTT
*
122162790 CTTCTTCTTCTCCTTCT
1 CTTTTTCTT-TCC-T-T
122162807 CTTTTTCTTT--TT
1 CTTTTTCTTTCCTT
122162819 CTTTTT
1 CTTTTT
122162825 TCTTCTCTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
12 7 0.17
13 1 0.03
14 19 0.47
15 3 0.08
16 1 0.03
17 9 0.22
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTTTTTCTTTCCTT
Found at i:122162795 original size:17 final size:18
Alignment explanation
Indices: 122162773--122162819 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
122162763 TTTTTCTTTC
122162773 CTTCTTTTTCCTTC-CCT
1 CTTCTTTTTCCTTCTCCT
*
122162790 CTTCTTCTTCTCCTTCTCTT
1 CTTCTT-TT-TCCTTCTCCT
*
122162810 TTTCTTTTTC
1 CTTCTTTTTC
122162820 TTTTTTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 8 0.32
20 7 0.28
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTCTTTTTCCTTCTCCT
Found at i:122162878 original size:3 final size:3
Alignment explanation
Indices: 122162872--122162920 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
122162862 TTTTTTTTCT
* *
122162872 TTC TTC TTC TTC -TC TTC TTC -CC TTC TTC TCTC TTT TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC
122162916 TTC TT
1 TTC TT
122162921 TGCCGAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 3 0.08
3 33 0.85
4 3 0.08
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:122162889 original size:8 final size:8
Alignment explanation
Indices: 122162876--122162920 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
122162866 TTTTCTTTCT
122162876 TCTTCTTC
1 TCTTCTTC
122162884 TCTTCTTC
1 TCTTCTTC
*
122162892 CCTTCTTC
1 TCTTCTTC
122162900 TC-TCTT-
1 TCTTCTTC
122162906 T-TTCTTC
1 TCTTCTTC
122162913 TTCTTCTT
1 -TCTTCTT
122162921 TGCCGAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
6 5 0.16
7 4 0.13
8 17 0.55
9 5 0.16
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (8 bp):
TCTTCTTC
Found at i:122162912 original size:16 final size:16
Alignment explanation
Indices: 122162871--122162921 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
122162861 CTTTTTTTTC
122162871 TTTCTTCTTCTTCTCTT
1 TTTCTTCTTC-TCTCTT
*
122162888 CTTCCCTTCTTCTCTCTT
1 -TT-TCTTCTTCTCTCTT
122162906 TTTCTTCTTCT-TCTT
1 TTTCTTCTTCTCTCTT
122162921 T
1 T
122162922 GCCGAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 5 0.17
16 8 0.27
17 2 0.07
18 8 0.27
19 7 0.23
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTCTTCTTCTCTCTT
Found at i:122164211 original size:57 final size:57
Alignment explanation
Indices: 122164120--122164231 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 57
122164110 GATTGTTAGA
* *
122164120 ATCAAATTAGACCAATCAGCTGAATTTAAGATTGATTGTTTGATGGACTTGATTGAT
1 ATCAAATTAGACCAATCAGCTGAATTGAAAATTGATTGTTTGATGGACTTGATTGAT
122164177 ATCAAATTAGACCAATCAGCTGAATTGAAAATTGATTGTTTGATGGACTTGATTG
1 ATCAAATTAGACCAATCAGCTGAATTGAAAATTGATTGTTTGATGGACTTGATTG
122164232 GTGATATAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (57 bp):
ATCAAATTAGACCAATCAGCTGAATTGAAAATTGATTGTTTGATGGACTTGATTGAT
Found at i:122165165 original size:20 final size:21
Alignment explanation
Indices: 122165135--122165175 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
122165125 ATTGATTCAA
*
122165135 TTGAATAAATAATTAAGAAAT
1 TTGAATAAATAATTAAAAAAT
122165156 TTGAAT-AATAATTAAAAAAT
1 TTGAATAAATAATTAAAAAAT
122165176 ATAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (21 bp):
TTGAATAAATAATTAAAAAAT
Found at i:122166352 original size:2 final size:2
Alignment explanation
Indices: 122166345--122166375 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
122166335 AAGCATTATC
122166345 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122166376 GTTGAATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:122170605 original size:17 final size:17
Alignment explanation
Indices: 122170583--122170633 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
122170573 AGCCTGTCAT
*
122170583 TATCAATAATTAAATAA
1 TATCAATAATAAAATAA
*
122170600 TATCAACAAATAAAATAA
1 TATCAA-TAATAAAATAA
122170618 TAAT-AATAATAAAATA
1 T-ATCAATAATAAAATA
122170634 TTAAACCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.52
18 12 0.41
19 2 0.07
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TATCAATAATAAAATAA
Found at i:122170951 original size:41 final size:41
Alignment explanation
Indices: 122170894--122170976 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
122170884 AAACGAAAAA
122170894 GAAGAAGAAAAATTATTAGTATGAGAACAAAGTGAAGAAAG
1 GAAGAAGAAAAATTATTAGTATGAGAACAAAGTGAAGAAAG
*
122170935 GAAGAAGAAAAATTATTAGTATGAGATCAAAGTGAAGAAAG
1 GAAGAAGAAAAATTATTAGTATGAGAACAAAGTGAAGAAAG
122170976 G
1 G
122170977 GTTCTATATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.18
Consensus pattern (41 bp):
GAAGAAGAAAAATTATTAGTATGAGAACAAAGTGAAGAAAG
Found at i:122171143 original size:2 final size:2
Alignment explanation
Indices: 122171136--122171165 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
122171126 AATCCATGTT
122171136 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122171166 ATCAGCTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:122171778 original size:22 final size:21
Alignment explanation
Indices: 122171748--122171788 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
122171738 ACTTCAATGT
122171748 TTTAATTTTAAATATATTAAAA
1 TTTAATTTT-AATATATTAAAA
* *
122171770 TTTATTTTTAATATTTTAA
1 TTTAATTTTAATATATTAA
122171789 TGAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTAATTTTAATATATTAAAA
Found at i:122177220 original size:46 final size:46
Alignment explanation
Indices: 122177166--122177255 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
122177156 ATTTTTCAAT
*
122177166 TTTAATATATGTATATAAGTGTCTAACAAAGTGAATTTTAGTGTAC
1 TTTAATATATGTATATAAGTCTCTAACAAAGTGAATTTTAGTGTAC
122177212 TTTAATATATGTATATAAGTCTCTAACAAAGTGAATTTTAGTGT
1 TTTAATATATGTATATAAGTCTCTAACAAAGTGAATTTTAGTGT
122177256 GATTTTAGCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (46 bp):
TTTAATATATGTATATAAGTCTCTAACAAAGTGAATTTTAGTGTAC
Found at i:122177689 original size:13 final size:14
Alignment explanation
Indices: 122177671--122177701 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
122177661 TTTTTGTTAA
122177671 AATTGAATTAA-TT
1 AATTGAATTAATTT
122177684 AATTGAATTAATTT
1 AATTGAATTAATTT
122177698 AATT
1 AATT
122177702 TTGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (14 bp):
AATTGAATTAATTT
Found at i:122184637 original size:21 final size:20
Alignment explanation
Indices: 122184608--122184656 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
122184598 AAAATGTTAC
122184608 AAAATAATCACTAAATTATTAT
1 AAAA-AATCACTAAATTATT-T
* * *
122184630 TAAAAATCATTGAATTATTT
1 AAAAAATCACTAAATTATTT
122184650 AAAAAAT
1 AAAAAAT
122184657 TTTATTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 7 0.30
21 13 0.57
22 3 0.13
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAAAATCACTAAATTATTT
Found at i:122186299 original size:132 final size:131
Alignment explanation
Indices: 122186045--122186402 Score: 486
Period size: 131 Copynumber: 2.7 Consensus size: 131
122186035 AGATGGTATT
* * * *
122186045 TTTATTTTAGGCTTATAAATGATTTCAGGTTGCTTCTTGATAAAATCTATTACTTT-CCTTGTTT
1 TTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTTTACTTTCCCTT-TTT
* *
122186109 TAGAAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATTATGTAATTTTATTAAAAAAAGGGT
65 TA-AAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTTGATTAAAAAAAGGGT
122186174 AAC
129 AAC
* ** *
122186177 TTTATTTTAGTCTTATCTATGATTTCAGGAGGCTTGTTAATAAAATCTTTTACTTTCCCTTTCTT
1 TTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTTTACTTTCCCTTT-TT
* * * * *
122186242 T-ATAAGATGAAATTCTAGTGATGAATTCAAGTGCTAATCATGTAATTTGATTAAAAAAATGGTA
65 TAAAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTTGATTAAAAAAAGGGTA
122186306 AC
130 AC
*
122186308 TTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTGTACTTTCCCTTTTTG
1 TTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTTTACTTTCCCTTTTT-
*
122186373 TAGAAAAAAAAGGAAATTCTAGTGATGAAT
65 T---AAAAAAAGGAAATTCCAGTGATGAAT
122186403 CCGTGGTTAC
Statistics
Matches: 196, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
130 2 0.01
131 116 0.59
132 49 0.25
133 7 0.04
135 22 0.11
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (131 bp):
TTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTTTACTTTCCCTTTTTT
AAAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTTGATTAAAAAAAGGGTAA
C
Found at i:122194655 original size:18 final size:18
Alignment explanation
Indices: 122194632--122194669 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
122194622 ACCTAAAATT
122194632 AAAATCGGTGTCTAATCC
1 AAAATCGGTGTCTAATCC
122194650 AAAATCGGTGTCTAATCC
1 AAAATCGGTGTCTAATCC
122194668 AA
1 AA
122194670 CTCACGGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (18 bp):
AAAATCGGTGTCTAATCC
Found at i:122198131 original size:16 final size:17
Alignment explanation
Indices: 122198112--122198144 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
122198102 GAAAATAAAT
122198112 AAGAATATA-TCTAATC
1 AAGAATATATTCTAATC
122198128 AAGAATATATTCTAATC
1 AAGAATATATTCTAATC
122198145 TGCATTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (17 bp):
AAGAATATATTCTAATC
Found at i:122224905 original size:150 final size:151
Alignment explanation
Indices: 122224633--122224925 Score: 507
Period size: 150 Copynumber: 1.9 Consensus size: 151
122224623 TACTGTATTT
* *
122224633 GTATCCCTACAAATAAAATTAGATACTTGTGTTGAGTGTGAATTTACATTATTAGCCTTGATATC
1 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATTATCAGCCTTGATATC
* * *
122224698 ATAAAAAAGTGATATTTTCTATTATTATTTTTTTAAGTATTTATGACCATATTTATTTTACTATC
66 ACAAAAAAGTGATATTTTCTATTATTATCTTTTTAAGTATTTATGACCATATTTATTTTACGATC
122224763 CATGAAGACTAATCTTTTCGG
131 CATGAAGACTAATCTTTTCGG
*
122224784 GTATCCCTACAAAT-AAACTAGATACTTGTGTTGAGTGTGAATTTACATTATCAGCCTTGATGTC
1 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATTATCAGCCTTGATATC
* *
122224848 ACAAAAAAGTGATATTTTCTATTGTTATCTTTTTAAGTATTTATGACCATATTTATTTTACGGTC
66 ACAAAAAAGTGATATTTTCTATTATTATCTTTTTAAGTATTTATGACCATATTTATTTTACGATC
122224913 CATGAAGACTAAT
131 CATGAAGACTAAT
122224926 AGACCAATCT
Statistics
Matches: 134, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
150 120 0.90
151 14 0.10
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (151 bp):
GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATTATCAGCCTTGATATC
ACAAAAAAGTGATATTTTCTATTATTATCTTTTTAAGTATTTATGACCATATTTATTTTACGATC
CATGAAGACTAATCTTTTCGG
Found at i:122225707 original size:17 final size:17
Alignment explanation
Indices: 122225685--122225731 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
122225675 CATGTGTCTT
*
122225685 ATAAAATATAATAAA-AA
1 ATAAAAAAT-ATAAACAA
122225702 ATAAAAAATATAAACAA
1 ATAAAAAATATAAACAA
122225719 ATGAAAAACATAT
1 AT-AAAAA-ATAT
122225732 TACTTTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 5 0.19
17 12 0.46
18 5 0.19
19 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (17 bp):
ATAAAAAATATAAACAA
Found at i:122226343 original size:3 final size:3
Alignment explanation
Indices: 122226337--122226362 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
122226327 TTCTTCTTCT
122226337 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
122226363 TCTTCTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:122226734 original size:30 final size:30
Alignment explanation
Indices: 122226663--122226744 Score: 76
Period size: 30 Copynumber: 2.8 Consensus size: 30
122226653 CGCTAGAATT
*
122226663 AAATAT-ATTTTATAATTTTTAAAAAATTA
1 AAATATAATTTTATAATTTTTAAAAAATCA
* * * ** *
122226692 AATTATATTTTTATTATTTTTATGATATCA
1 AAATATAATTTTATAATTTTTAAAAAATCA
* *
122226722 AAATATAATTTTATCATTATTAA
1 AAATATAATTTTATAATTTTTAA
122226745 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
29 5 0.12
30 35 0.88
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (30 bp):
AAATATAATTTTATAATTTTTAAAAAATCA
Found at i:122240475 original size:109 final size:110
Alignment explanation
Indices: 122240284--122240484 Score: 311
Period size: 109 Copynumber: 1.8 Consensus size: 110
122240274 GCTATAAATA
*
122240284 GCATACCTGTAAAAGTGCAGCAATAGTACCAAAAGAATTCCACAACAATGGAGCCAAATCTTGAA
1 GCATACCTGTAAAAGTGCAGCAATAGTACCAAAAGAATTCCACAACAAAGGAGCCAAATCTTGAA
122240349 ATAATTCTCTCTTCT-AAAAATAAAAACAAAAACAAGTTTATTAG
66 ATAATTCTCTCTTCTAAAAAATAAAAACAAAAACAAGTTTATTAG
* *
122240393 GCATACCTG-AATGAGTGCAGCTATAGTACCAAAAGAATTCCAC-ACGAAAGGAGCCAAATCTTG
1 GCATACCTGTAA-AAGTGCAGCAATAGTACCAAAAGAATTCCACAAC-AAAGGAGCCAAATCTTG
*
122240456 AAATAATTC-CTTGTTCTAAAAAATAAAAA
64 AAATAATTCTC-TCTTCTAAAAAATAAAAA
122240485 GGTAGACGCT
Statistics
Matches: 84, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
108 5 0.06
109 68 0.81
110 11 0.13
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.23
Consensus pattern (110 bp):
GCATACCTGTAAAAGTGCAGCAATAGTACCAAAAGAATTCCACAACAAAGGAGCCAAATCTTGAA
ATAATTCTCTCTTCTAAAAAATAAAAACAAAAACAAGTTTATTAG
Found at i:122244033 original size:29 final size:28
Alignment explanation
Indices: 122243995--122244063 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 28
122243985 TTCCTTAAAT
122243995 AAATTATATATTTTAAAACATGTTTTAA
1 AAATTATATATTTTAAAACATGTTTTAA
* *
122244023 AAATTGATATATTTTAAAATATGTTTTTA
1 AAATT-ATATATTTTAAAACATGTTTTAA
*
122244052 AAACTA-ATATTT
1 AAATTATATATTT
122244064 CTTAATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.16
28 6 0.16
29 25 0.68
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (28 bp):
AAATTATATATTTTAAAACATGTTTTAA
Found at i:122244068 original size:29 final size:28
Alignment explanation
Indices: 122244000--122244093 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 28
122243990 TAAATAAATT
* * * *
122244000 ATATATTTTAAAACATGTTTTAAAAATTG
1 ATAT-TTTTAAAAAATGTTTTTAAAACTA
*
122244029 ATATATTTTAAAATATGTTTTTAAAACTA
1 ATAT-TTTTAAAAAATGTTTTTAAAACTA
122244058 ATATTTCTTAATAAAACTGTTTTT-AAACTAA
1 ATATTT-TTAA-AAAA-TGTTTTTAAAACT-A
122244089 ATATT
1 ATATT
122244094 AAATTTTTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
28 2 0.04
29 33 0.59
30 8 0.14
31 13 0.23
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (28 bp):
ATATTTTTAAAAAATGTTTTTAAAACTA
Found at i:122254065 original size:61 final size:61
Alignment explanation
Indices: 122253955--122254072 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 61
122253945 TGCTAATAAC
* ** * * * * *
122253955 TTCTTTTTTGTCTCATGTTACAATATTACTATACTATTTTATTTTACTATTATCGTTTAAT
1 TTCTTTTTTATCTCATACTACAATATTACTATACTATCTAATCTCACTATTACCGTTTAAT
* *
122254016 TTCTTTTTTATCTTATACTACAATATTACTATATTATCTAATCTCACTATTACCGTT
1 TTCTTTTTTATCTCATACTACAATATTACTATACTATCTAATCTCACTATTACCGTT
122254073 ATTTTTATTA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.03, T:0.54
Consensus pattern (61 bp):
TTCTTTTTTATCTCATACTACAATATTACTATACTATCTAATCTCACTATTACCGTTTAAT
Found at i:122254474 original size:11 final size:11
Alignment explanation
Indices: 122254458--122254505 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
122254448 CCAAATAAAC
122254458 TATTTTACTAT
1 TATTTTACTAT
**
122254469 TATTTTGTTAT
1 TATTTTACTAT
*
122254480 TATATTACTAT
1 TATTTTACTAT
*
122254491 TATTTTATTAT
1 TATTTTACTAT
122254502 TATT
1 TATT
122254506 GTTAATTTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (11 bp):
TATTTTACTAT
Found at i:122254487 original size:22 final size:22
Alignment explanation
Indices: 122254462--122254504 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
122254452 ATAAACTATT
*
122254462 TTACTATTATTTTGTTATTATA
1 TTACTATTATTTTATTATTATA
122254484 TTACTATTATTTTATTATTAT
1 TTACTATTATTTTATTATTAT
122254505 TGTTAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (22 bp):
TTACTATTATTTTATTATTATA
Found at i:122256767 original size:29 final size:29
Alignment explanation
Indices: 122256686--122256782 Score: 97
Period size: 29 Copynumber: 3.3 Consensus size: 29
122256676 TTTAAGAGTT
* * *
122256686 AAACCTTTTAAAATTGTCATATAATGGCC
1 AAACCTTTCAAAATTGTCAAATAAAGGCC
* *
122256715 TAACGTTTACAAAAGTAT-TCAAATAAAGGCC
1 AAACCTTT-CAAAA-T-TGTCAAATAAAGGCC
* *
122256746 AAACCTTTCAAAATTGTCAAATAAAAGAC
1 AAACCTTTCAAAATTGTCAAATAAAGGCC
122256775 AAACCTTT
1 AAACCTTT
122256783 TCGCAAATGC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
28 1 0.02
29 26 0.47
30 9 0.16
31 18 0.33
32 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (29 bp):
AAACCTTTCAAAATTGTCAAATAAAGGCC
Found at i:122258735 original size:59 final size:59
Alignment explanation
Indices: 122258635--122258869 Score: 240
Period size: 59 Copynumber: 3.9 Consensus size: 59
122258625 ATATCAATGA
*
122258635 CTAACTTAGACCAAAAAAAAGTTCAGACCTCAATGTC-GGAACAATTGCCAAGTTCAAGGC
1 CTAACTTGGA-CAAAAAAAAGTTCAGACCTCAATG-CGGGAACAATTGCCAAGTTCAAGGC
* * * *
122258695 TTAACTTGGACAAAAAGAAGTTCAAACCTCAATGCGGGAACAATTGCCAAGTTCAATGC
1 CTAACTTGGACAAAAAAAAGTTCAGACCTCAATGCGGGAACAATTGCCAAGTTCAAGGC
* * * *
122258754 CTAACTTGGACAAAAAAAAAAAAGTTCAGACCTCAATGTGAGAACAATTGTCAAGTTCAGGGC
1 CTAACTTGGAC----AAAAAAAAGTTCAGACCTCAATGCGGGAACAATTGCCAAGTTCAAGGC
* * * * ** * *
122258817 CTAATTTGGATTAAAAAAAA-TTCAGGCCCCAATTTGAGAATAATTGCCAAGTT
1 CTAACTTGGA-CAAAAAAAAGTTCAGACCTCAATGCGGGAACAATTGCCAAGTT
122258870 TAAGCCCCAA
Statistics
Matches: 149, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
58 1 0.01
59 82 0.55
60 16 0.11
63 50 0.34
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (59 bp):
CTAACTTGGACAAAAAAAAGTTCAGACCTCAATGCGGGAACAATTGCCAAGTTCAAGGC
Found at i:122258862 original size:122 final size:122
Alignment explanation
Indices: 122258647--122258869 Score: 297
Period size: 122 Copynumber: 1.8 Consensus size: 122
122258637 AACTTAGACC
*
122258647 AAAAAAAAGTTCAGACCTCAATGTCGGAACAATTGCCAAGTTCAAGGCTTAACTTGGACAAAAAG
1 AAAAAAAAGTTCAGACCTCAATGTCGGAACAATTGCCAAGTTCAAGGCCTAACTTGGACAAAAAG
* * *
122258712 AAGTTCAAACCTCAATGCGGGAACAATTGCCAAGTTCAATGCCTAACTTGGACAAAA
66 AAATTCAAACCCCAATGCGAGAACAATTGCCAAGTTCAATGCCTAACTTGGACAAAA
* * * *
122258769 AAAAAAAAGTTCAGACCTCAATGT-GAGAACAATTGTCAAGTTCAGGGCCTAATTTGGATTAAAA
1 AAAAAAAAGTTCAGACCTCAATGTCG-GAACAATTGCCAAGTTCAAGGCCTAACTTGGA-CAAAA
** ** *
122258833 A-AAATTCAGGCCCCAATTTGAGAATAATTGCCAAGTT
64 AGAAATTCAAACCCCAATGCGAGAACAATTGCCAAGTT
122258870 TAAGCCCCAA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
121 1 0.01
122 80 0.93
123 5 0.06
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (122 bp):
AAAAAAAAGTTCAGACCTCAATGTCGGAACAATTGCCAAGTTCAAGGCCTAACTTGGACAAAAAG
AAATTCAAACCCCAATGCGAGAACAATTGCCAAGTTCAATGCCTAACTTGGACAAAA
Found at i:122266107 original size:34 final size:34
Alignment explanation
Indices: 122266064--122266132 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
122266054 CAAACAAAAC
122266064 TCCTAACATTTGCAAGCATGTTTACCATCTAGTT
1 TCCTAACATTTGCAAGCATGTTTACCATCTAGTT
122266098 TCCTAACATTTGCAAGCATGTTTACCATCTAGTT
1 TCCTAACATTTGCAAGCATGTTTACCATCTAGTT
122266132 T
1 T
122266133 GATGTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (34 bp):
TCCTAACATTTGCAAGCATGTTTACCATCTAGTT
Found at i:122266297 original size:15 final size:15
Alignment explanation
Indices: 122266277--122266309 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
122266267 AATTGAGTGG
122266277 AACCTGACATAATCA
1 AACCTGACATAATCA
122266292 AACCTGACATAATCA
1 AACCTGACATAATCA
122266307 AAC
1 AAC
122266310 AAATTGTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.27, G:0.06, T:0.18
Consensus pattern (15 bp):
AACCTGACATAATCA
Found at i:122266977 original size:33 final size:33
Alignment explanation
Indices: 122266930--122266996 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
122266920 AAAAGTTGGC
122266930 AATATCGCAAAGTTGGTTTTAATACACAGTTTT
1 AATATCGCAAAGTTGGTTTTAATACACAGTTTT
* * * *
122266963 AATATCGTATAGTTGTTTTTAATACTCAGTTTT
1 AATATCGCAAAGTTGGTTTTAATACACAGTTTT
122266996 A
1 A
122266997 TAATAAGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (33 bp):
AATATCGCAAAGTTGGTTTTAATACACAGTTTT
Found at i:122267706 original size:18 final size:18
Alignment explanation
Indices: 122267679--122267715 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
122267669 GGGCTTCTTC
122267679 TGTAAAAATTCAAGCTGT
1 TGTAAAAATTCAAGCTGT
* *
122267697 TGTAAGAATTCAAGTTGT
1 TGTAAAAATTCAAGCTGT
122267715 T
1 T
122267716 ATTCGTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (18 bp):
TGTAAAAATTCAAGCTGT
Found at i:122271559 original size:46 final size:44
Alignment explanation
Indices: 122271455--122271562 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
122271445 TGTCTTTGAC
** * * *
122271455 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
122271499 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
122271545 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
122271563 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:122277511 original size:46 final size:44
Alignment explanation
Indices: 122277407--122277514 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
122277397 TGTCTTTGAC
** * * *
122277407 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
122277451 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
122277497 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
122277515 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:122279679 original size:20 final size:20
Alignment explanation
Indices: 122279646--122279702 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
122279636 ATTAATTCCA
*
122279646 TAACTTCATTTGGATAATGC
1 TAACTTCGTTTGGATAATGC
* *
122279666 TAAGTTGGTTTGGATAATGC
1 TAACTTCGTTTGGATAATGC
*
122279686 TAACTTCTTTTGGATAA
1 TAACTTCGTTTGGATAA
122279703 ACAATTAGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (20 bp):
TAACTTCGTTTGGATAATGC
Found at i:122291856 original size:16 final size:16
Alignment explanation
Indices: 122291835--122291867 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
122291825 CTCACTAAGT
122291835 TGCAATCCAACTTATA
1 TGCAATCCAACTTATA
*
122291851 TGCAATCTAACTTATA
1 TGCAATCCAACTTATA
122291867 T
1 T
122291868 ACATGAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (16 bp):
TGCAATCCAACTTATA
Found at i:122300192 original size:2 final size:2
Alignment explanation
Indices: 122300187--122300213 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
122300177 ACACACACAC
122300187 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
122300214 ACAAGAGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:122302953 original size:2 final size:2
Alignment explanation
Indices: 122302946--122302971 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
122302936 CTGTCTATCA
122302946 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
122302972 TTAAATTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122304894 original size:29 final size:29
Alignment explanation
Indices: 122304862--122304995 Score: 76
Period size: 29 Copynumber: 4.5 Consensus size: 29
122304852 AGTTTTAGGA
122304862 ATTTAATTAAAATTTTTAAAATTTTATAG
1 ATTTAATTAAAATTTTTAAAATTTTATAG
* *** *
122304891 ATTTAATCAAAAAAATTATAAATTTT-TGG
1 ATTTAATTAAAATTTTTA-AAATTTTATAG
* * * * *
122304920 ATTTCATGAAAAATTTCAAAAGTTTA-AGGG
1 ATTTAATTAAAATTTTTAAAATTTTATA--G
* * *
122304950 GTTT-ATTAAAATTTTTAAATTTTTTTATAAA
1 ATTTAATTAAAATTTTTAAA--ATTTTAT-AG
122304981 ATTTAATTAAAATTT
1 ATTTAATTAAAATTT
122304996 CCAATAAATT
Statistics
Matches: 76, Mismatches: 20, Indels: 15
0.68 0.18 0.14
Matches are distributed among these distances:
28 6 0.08
29 41 0.54
30 11 0.14
31 7 0.09
32 10 0.13
33 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (29 bp):
ATTTAATTAAAATTTTTAAAATTTTATAG
Found at i:122306343 original size:14 final size:14
Alignment explanation
Indices: 122306324--122306356 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
122306314 TACAATATCT
122306324 AAATAATAACAACA
1 AAATAATAACAACA
122306338 AAATAATAACAACA
1 AAATAATAACAACA
*
122306352 TAATA
1 AAATA
122306357 GTGAAATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (14 bp):
AAATAATAACAACA
Found at i:122306683 original size:8 final size:8
Alignment explanation
Indices: 122306672--122306696 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
122306662 ACCAAGAAAC
122306672 CCTAGCCA
1 CCTAGCCA
122306680 CCTAGCCA
1 CCTAGCCA
122306688 CCTAGCCA
1 CCTAGCCA
122306696 C
1 C
122306697 TTTCCCACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.52, G:0.12, T:0.12
Consensus pattern (8 bp):
CCTAGCCA
Found at i:122307489 original size:2 final size:2
Alignment explanation
Indices: 122307482--122307532 Score: 61
Period size: 2 Copynumber: 26.5 Consensus size: 2
122307472 TTCTAATACG
* * *
122307482 TA TA TA TA TA TA TA TA TA TA TG TA T- TT TA TA TA TA T- TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122307522 TA TA TA TA TA T
1 TA TA TA TA TA T
122307533 TTTTAATGCC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (2 bp):
TA
Found at i:122307514 original size:15 final size:15
Alignment explanation
Indices: 122307482--122307533 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
122307472 TTCTAATACG
*
122307482 TATATA-TATATATA
1 TATATATTATGTATA
*
122307496 TATATATGTAT-TTTA
1 TATATAT-TATGTATA
122307511 TATATATTATGTATA
1 TATATATTATGTATA
122307526 TATATATT
1 TATATATT
122307534 TTTAATGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 9 0.27
15 21 0.64
16 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
TATATATTATGTATA
Found at i:122309604 original size:12 final size:12
Alignment explanation
Indices: 122309587--122309622 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
122309577 ATTCATTTGA
122309587 CATTCATGCATT
1 CATTCATGCATT
*
122309599 CATTCATGCATC
1 CATTCATGCATT
*
122309611 CATTCATTCATT
1 CATTCATGCATT
122309623 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:122309616 original size:16 final size:17
Alignment explanation
Indices: 122309595--122309626 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
122309585 GACATTCATG
122309595 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
122309611 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
122309627 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:122317854 original size:72 final size:72
Alignment explanation
Indices: 122317735--122317877 Score: 207
Period size: 72 Copynumber: 2.0 Consensus size: 72
122317725 AAGCCTTTTT
*
122317735 ATTTTTGTTTTTCAAAATCAACTCATATTACTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT
1 ATTTTTGTTTTTCAAAATCAACTCATATTACGAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT
*
122317800 ATTTTCA
66 ACTTTCA
** * * *
122317807 ATTTTTGTGTTTT-AATTTCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
1 ATTTTTGT-TTTTCAAAATCAACTCATATTACGAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGG
122317871 TACTTTC
65 TACTTTC
122317878 TGTTTTCAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
72 59 0.94
73 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (72 bp):
ATTTTTGTTTTTCAAAATCAACTCATATTACGAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT
ACTTTCA
Found at i:122318067 original size:140 final size:140
Alignment explanation
Indices: 122317828--122318309 Score: 834
Period size: 140 Copynumber: 3.5 Consensus size: 140
122317818 TTAATTTCAA
*
122317828 CTCATATTGCGATAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA----C--TTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
122317887 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
122317952 TCAAAATCAG
131 TCAAAATCAG
*
122317962 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
122318027 TTTACGTTGTTCAAGAATCAACTCATATTGTGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
122318092 TCAAAATCAG
131 TCAAAATCAG
122318102 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
122318167 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
122318232 TCAAAATCAG
131 TCAAAATCAG
122318242 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
122318306 TCAA
62 TCAA
122318310 AAAAAAAATT
Statistics
Matches: 330, Mismatches: 8, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
134 43 0.13
138 1 0.00
139 2 0.01
140 255 0.77
142 23 0.07
143 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:122318165 original size:13 final size:13
Alignment explanation
Indices: 122318147--122318180 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
122318137 CGCTGAGGTA
*
122318147 TTTTCAATTTCTG
1 TTTTCAATTTATG
122318160 TTTTCAATTTATG
1 TTTTCAATTTATG
122318173 TTGTTCAA
1 TT-TTCAA
122318181 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:122318427 original size:72 final size:72
Alignment explanation
Indices: 122318229--122318454 Score: 285
Period size: 72 Copynumber: 3.0 Consensus size: 72
122318219 AATTTCTACT
* ** * * * *
122318229 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
122318292 TCAATTTCTG
63 TCAATTTCTG
122318302 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
122318367 AATTTCAATTTCTG
59 AATTTCAATTTCTG
122318381 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
122318446 ATTTCTG
66 ATTTCTG
122318453 TT
1 TT
122318455 CAAAATGAGT
Statistics
Matches: 137, Mismatches: 7, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
72 69 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 24 0.18
80 4 0.03
81 30 0.22
82 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:122318465 original size:49 final size:49
Alignment explanation
Indices: 122318408--122318503 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
122318398 ATATTGCGAG
*
122318408 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* *
122318457 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
122318504 TTTCAAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:122318486 original size:200 final size:202
Alignment explanation
Indices: 122318276--122318657 Score: 642
Period size: 200 Copynumber: 1.9 Consensus size: 202
122318266 GCCTCGGTTC
*
122318276 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATG
1 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATG
* *
122318341 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTC-AAAATTCAACTCATATTG
66 AGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTG
*
122318404 CGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAG
131 CGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAG
122318469 CCTCAAG
196 CCTCAAG
* *
122318476 ACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGTGAGAAATG
1 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATG
* *
122318541 AGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATT
66 AGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATT
** *
122318606 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
130 GCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
122318658 GTCAAAAAAA
Statistics
Matches: 168, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
200 99 0.59
201 5 0.03
203 64 0.38
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (202 bp):
ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATG
AGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTG
CGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAG
CCTCAAG
Found at i:122318567 original size:128 final size:121
Alignment explanation
Indices: 122318336--122318582 Score: 359
Period size: 128 Copynumber: 2.0 Consensus size: 121
122318326 ATATTGCGAG
* *
122318336 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
*
122318401 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* *
122318457 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC------AAAAATCA
* * *
122318522 ACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
59 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
122318583 TTTCAAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
121 42 0.38
122 5 0.05
128 64 0.58
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:122318702 original size:74 final size:75
Alignment explanation
Indices: 122318460--122318739 Score: 375
Period size: 75 Copynumber: 3.7 Consensus size: 75
122318450 CTGTTCAAAA
*
122318460 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACT
1 TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC----AAAAAAATCAACT
**
122318525 CATATTGTGAGAAA
62 CATATTGTGAGAGG
*
122318539 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
*
122318604 TTGCGAGAGG
66 TTGTGAGAGG
* * * *
122318614 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
122318678 TTGTGAGAGG
66 TTGTGAGAGG
* * *
122318688 CGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT-TCGTTTTTCAA
1 TGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCT-GTTTTTCAA
122318740 TTTCTGCCTT
Statistics
Matches: 184, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
74 44 0.24
75 64 0.35
76 22 0.12
77 6 0.03
79 48 0.26
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (75 bp):
TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
TTGTGAGAGG
Found at i:122318831 original size:93 final size:93
Alignment explanation
Indices: 122318661--122318832 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 93
122318651 TTCTGTTGTC
* * *
122318661 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
122318726 TTTTCGTTTTTCAATTTCTGCCTTTCAA
66 TTTTCGTCTTTCAATTTCTGCCTTTCAA
* * *
122318754 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCACGCACTGAGCTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC-C-GAGCTATTTTC
122318817 AA-TTTCTGTCTTTCAA
64 AATTTTC-GTCTTTCAA
122318833 AAAAATCAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 6 0.09
92 7 0.10
93 56 0.81
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTTCGTCTTTCAATTTCTGCCTTTCAA
Found at i:122318862 original size:77 final size:77
Alignment explanation
Indices: 122318733--122319327 Score: 369
Period size: 88 Copynumber: 7.2 Consensus size: 77
122318723 CAATTTTCGT
**
122318733 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
122318798 CACGCACTGAGCTA
64 CACGCACTGAGCTA
* * * *
122318812 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
* *
122318876 ACACACTGAGGTA
65 ACGCACTGAGCTA
* * * * * * *
122318889 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
122318954 CA--CATGTCGAGGTA
64 CACGCA-CT-GAGCTA
** *
122318968 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
122319033 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTTGGCTCACGCACTGAGCTA
*
122319056 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTT
1 TTTTCAATTTCTG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CT
*** * * * *
122319121 TAATTTCTGCGAGAGTTGAGTTGA
59 T-GGCTC-ACG-CA-CTGAGCT-A
* * *
122319145 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
** *
122319207 TCACATA-TCGAGGTA
63 TCACGCACT-GAGCTA
*
122319222 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
**
122319286 AGCCTTGGCTCACGTGCTGAGCTA
54 AGCCTTGGCTCACGCACTGAGCTA
122319310 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
122319328 AATGTCTGTT
Statistics
Matches: 410, Mismatches: 57, Indels: 101
0.72 0.10 0.18
Matches are distributed among these distances:
75 3 0.01
76 7 0.02
77 71 0.17
78 6 0.01
79 82 0.20
80 7 0.02
81 7 0.02
82 32 0.08
83 4 0.01
84 34 0.08
85 7 0.02
86 4 0.01
87 11 0.03
88 112 0.27
89 3 0.01
90 1 0.00
91 12 0.03
92 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CGCACTGAGCTA
Found at i:122318895 original size:79 final size:77
Alignment explanation
Indices: 122318732--122318946 Score: 279
Period size: 79 Copynumber: 2.7 Consensus size: 77
122318722 TCAATTTTCG
* * * *
122318732 TTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAG-CTTAGA
*
122318797 TCACGCACTGAGCTA
63 TCACACACTGAGCTA
122318812 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAGATC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTT-AGATC
*
122318876 ACACACTGAGGTA
65 ACACACTGAGCTA
* * * * *
122318889 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGC
1 -TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
122318947 CTCGGGTCAC
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
76 3 0.02
77 49 0.40
79 69 0.57
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (77 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTAGATCA
CACACTGAGCTA
Found at i:122318966 original size:79 final size:79
Alignment explanation
Indices: 122318754--122318971 Score: 264
Period size: 79 Copynumber: 2.8 Consensus size: 79
122318744 TGCCTTTCAA
* * * *
122318754 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC-GCACTGAGCTA--TTTT
1 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGATCACAG-ACTGAGGTATTTTTT
* *
122318816 CAATTTCTGTCTTTC
65 CAATTTATATCTTTC
* * *
122318831 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGATCACAGACTGAGGTATTTTTTC
*
122318896 AATTTATATTTTTC
66 AATTTATATCTTTC
* * * *
122318910 AAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGGGTCACATGTC-GAGGTATTTT
1 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGATCACA-GACTGAGGTATTTT
122318972 CAAAATCTGT
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
77 50 0.42
79 69 0.57
80 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (79 bp):
AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGATCACAGACTGAGGTATTTTTTC
AATTTATATCTTTC
Found at i:122319097 original size:249 final size:241
Alignment explanation
Indices: 122318513--122319327 Score: 909
Period size: 254 Copynumber: 3.3 Consensus size: 241
122318503 TTTTCAAAAA
* * ** * *
122318513 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* * *
122318575 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTG
65 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
* * * * *
122318638 AGGTA-ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCA
130 AGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-
* * * * *
122318702 GGTCACACGCCGAGGTATTTTC-AATTTTCGTTTTTCAATTTCTGCCTTTC
194 GGTCACATGTCGAGGTATTTTCAAAATCT-GTTTTTCAAGTTCTG--TTTC
* **
122318752 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTTTC
1 ---AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
* *
122318817 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAGATCACACAC
63 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
* * *
122318882 TGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGC
128 TGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
122318947 CTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
191 CTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-TTTC
122319000 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
*
122319064 TTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTC
66 TTCTG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC
* * * * *
122319128 TGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAG
122 -AC-ACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGTGAGAG
* * * * **
122319190 GTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
180 GTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
*
122319253 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
122319318 TTCTGTTTTT
66 TTCTGTTTTT
122319328 AATGTCTGTT
Statistics
Matches: 494, Mismatches: 52, Indels: 46
0.83 0.09 0.08
Matches are distributed among these distances:
242 34 0.07
243 1 0.00
244 133 0.27
245 1 0.00
246 12 0.02
248 27 0.05
249 101 0.20
250 10 0.02
251 3 0.01
252 2 0.00
253 5 0.01
254 138 0.28
255 9 0.02
256 14 0.03
257 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (241 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
GGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGG
TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTC
Found at i:122319134 original size:30 final size:30
Alignment explanation
Indices: 122319098--122319159 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
122319088 CAACTCATAT
122319098 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
122319128 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
122319158 TG
1 TG
122319160 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:122320841 original size:2 final size:2
Alignment explanation
Indices: 122320834--122320880 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
122320824 TTCTAATACG
* * *
122320834 TA TA TA TA TA TA TA TA TG TA T- TT TA TA TA TA T- TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122320874 TA TA TA T
1 TA TA TA T
122320881 TTTTAATGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (2 bp):
TA
Found at i:122320862 original size:15 final size:15
Alignment explanation
Indices: 122320840--122320881 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
122320830 TACGTATATA
122320840 TATATATATATGTAT-
1 TATATATATAT-TATG
*
122320855 TTTATATATATTATG
1 TATATATATATTATG
122320870 TATATATATATT
1 TATATATATATT
122320882 TTTAATGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 3 0.12
15 21 0.88
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATATATATTATG
Found at i:122322714 original size:10 final size:10
Alignment explanation
Indices: 122322701--122322731 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
122322691 TTCTTTAGAT
122322701 TTTTTTAAAA
1 TTTTTTAAAA
122322711 TTTTTTAAAGA
1 TTTTTTAAA-A
122322722 TTTTTTAAAA
1 TTTTTTAAAA
122322732 GTATAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:122322756 original size:18 final size:19
Alignment explanation
Indices: 122322733--122322769 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
122322723 TTTTTAAAAG
122322733 TATAAAT-TTTGGAATTTT
1 TATAAATATTTGGAATTTT
*
122322751 TATAAATATTTTGAATTTT
1 TATAAATATTTGGAATTTT
122322770 AAAAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:122322770 original size:18 final size:17
Alignment explanation
Indices: 122322733--122322785 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
122322723 TTTTTAAAAG
*
122322733 TATAAATTTTGGAATTTT
1 TATAAATTTTTGAA-TTT
122322751 TATAAATATTTTGAATTT
1 TATAAAT-TTTTGAATTT
*
122322769 TAAAAATTATTTGAATT
1 TATAAATT-TTTGAATT
122322786 CTTTTTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 1 0.03
18 24 0.77
19 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (17 bp):
TATAAATTTTTGAATTT
Found at i:122324800 original size:54 final size:57
Alignment explanation
Indices: 122324727--122324832 Score: 164
Period size: 54 Copynumber: 1.9 Consensus size: 57
122324717 CTGTGGAGTT
*
122324727 TACTTGTAATATGATGGAGGTGGTGGTGACTTATACACATATGGGGGTGGAGATTCA
1 TACTTGTAATATGATGGAGGTGGTGGTGACTTATACACATATGGAGGTGGAGATTCA
* *
122324784 TACTTGT-ATA-GA-GGAGGTGGTGGTGACTTGTACATATATGGAGGTGGAG
1 TACTTGTAATATGATGGAGGTGGTGGTGACTTATACACATATGGAGGTGGAG
122324833 GTGGTGACTT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
54 34 0.74
55 2 0.04
56 3 0.07
57 7 0.15
ACGTcount: A:0.25, C:0.08, G:0.36, T:0.31
Consensus pattern (57 bp):
TACTTGTAATATGATGGAGGTGGTGGTGACTTATACACATATGGAGGTGGAGATTCA
Found at i:122324986 original size:120 final size:120
Alignment explanation
Indices: 122324802--122325899 Score: 1190
Period size: 120 Copynumber: 9.1 Consensus size: 120
122324792 TAGAGGAGGT
* * * * *** * * *
122324802 GGTGGTGACTTGTACATATATGGAGGTGGAGGTGGTGACTTGTACACATATGGGGGTGGAGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
*
122324867 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGGGGTGGA
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * * * * * *** * * *
122324922 GGCGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGATTTGTACGCATAAGGAGGCGGAGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
** *
122324987 TGACTCATACTTGTATGGAGGTGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * *
122325042 GGCGGAGACTTATACTTGTATGGAGGTGGAGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
* *
122325107 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * *
122325162 GGCGGAGACTTATACTTGTATGGAGGTGGAGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
** * *
122325227 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGAGGT
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * * * *
122325282 GGTGGTGACTTGTACACGTATGGGGGTGGAGGTGGAGACTTATACTTGTATGGAGGAGGTGATGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
*
122325347 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGGGGTGGA
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * *
122325402 GGTGGAGACTCATACTTGTATGGAGGTGGAGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
* *** * * * ** ** *
122325467 TGATTTGTACACATAAGGAGGCGGAGGTGGTGACTCATACTTGTATGGAGGAGGTGGT
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTAT---GGAGGTGGA
* * ** * *
122325525 GGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
** * * * *
122325590 TGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTGTACACATATGGAGGAGGT
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * ** * * * *** * *
122325645 GGTGGTGATTTGTACACATATGGAGGCGGAGGTGGTGATTTGTACACATATGGAGGCGGAGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
** * ** ** *
122325710 TGACTCATACTTGTATGGAGGAGGTGGTGGCGACTCATACTTGTATGGAGGTGGT
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * * * *
122325765 GGTGGCGACTTGTACATGTATGGGGGTGGAGGCGGAGACTTATACTTATATGGAGGAGGTGGTGG
1 GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
* * * * ***
122325830 TGACTTGTACATATATGGAGGTGGAGGTGGTGACTTGTACGTATATGGAGGTGGA
66 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
122325885 GGT-GACGACTTATAC
1 GGTGGA-GACTTATAC
122325900 TCATATGGCG
Statistics
Matches: 830, Mismatches: 144, Indels: 8
0.85 0.15 0.01
Matches are distributed among these distances:
119 1 0.00
120 733 0.88
123 96 0.12
ACGTcount: A:0.20, C:0.09, G:0.42, T:0.29
Consensus pattern (120 bp):
GGTGGAGACTTATACATGTATGGAGGTGGAGGTGGTGACTTATACTTGTATGGAGGAGGTGGTGG
TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
Found at i:122325907 original size:30 final size:30
Alignment explanation
Indices: 122324784--122325888 Score: 1022
Period size: 30 Copynumber: 36.7 Consensus size: 30
122324774 TGGAGATTCA
* * *
122324784 TACTTGTATAGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122324814 TACATATATGGAGGTGGAGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** *
122324844 TACACATATGGGGGTGGAGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122324874 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
** * * * **
122324904 TACACGTATGGGGGTGGAGGCGGAGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * *
122324934 TACTTGTATGGAGGAGGTGGTGGTGATTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** * * **
122324964 TACGCATAAGGAGGCGGAGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*
122324994 TACTTGTATGGAGGTGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
** * * *
122325024 TACACGTATGGAGGTGGAGGCGGAGACTTA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
**
122325054 TACTTGTATGGAGGTGGAGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325084 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325114 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** * * * *
122325144 TACACATATGGGGGTGGAGGCGGAGACTTA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
**
122325174 TACTTGTATGGAGGTGGAGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325204 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325234 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325264 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
** * * *
122325294 TACACGTATGGGGGTGGAGGTGGAGACTTA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * *
122325324 TACTTGTATGGAGGAGGTGATGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325354 TACTTGTATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
** * * **
122325384 TACACGTATGGGGGTGGAGGTGGAGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
**
122325414 TACTTGTATGGAGGTGGAGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * *
122325444 TACTTGTATGGAGGAGGTGGTGGTGATTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** * * **
122325474 TACACATAAGGAGGCGGAGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*
122325504 TACTTGTATGGAGGAGGTGGTGGTGGTGACTTG
1 TACTTGTAT---GGAGGTGGAGGTGGTGACTTG
*** *
122325537 TACACATATGGGGGTGGAGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * **
122325567 TACTTGTATGGAGGAGGTGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*
122325597 TACTTGTATGGAGGAGGAGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** * * *
122325627 TACACATATGGAGGAGGTGGTGGTGATTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** * *
122325657 TACACATATGGAGGCGGAGGTGGTGATTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
*** * **
122325687 TACACATATGGAGGCGGAGGTGGTGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * * **
122325717 TACTTGTATGGAGGAGGTGGTGGCGACTCA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325747 TACTTGTATGGAGGTGGTGGTGGCGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * * * *
122325777 TACATGTATGGGGGTGGAGGCGGAGACTTA
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* * *
122325807 TACTTATATGGAGGAGGTGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325837 TACATATATGGAGGTGGAGGTGGTGACTTG
1 TACTTGTATGGAGGTGGAGGTGGTGACTTG
* *
122325867 TACGTATATGGAGGTGGAGGTG
1 TACTTGTATGGAGGTGGAGGTG
122325889 ACGACTTATA
Statistics
Matches: 885, Mismatches: 187, Indels: 6
0.82 0.17 0.01
Matches are distributed among these distances:
30 862 0.97
33 23 0.03
ACGTcount: A:0.20, C:0.09, G:0.42, T:0.29
Consensus pattern (30 bp):
TACTTGTATGGAGGTGGAGGTGGTGACTTG
Found at i:122326412 original size:38 final size:38
Alignment explanation
Indices: 122326357--122326432 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
122326347 AACCATGAAG
*
122326357 TAGTCAACAGAATTTGTACTTGAAATGTTCTTAGCAAA
1 TAGTCAACAGAAGTTGTACTTGAAATGTTCTTAGCAAA
122326395 TAGTCAACAGAAGTTGTACTTGAAATGTTCTTAGCAAA
1 TAGTCAACAGAAGTTGTACTTGAAATGTTCTTAGCAAA
122326433 CGTTACATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (38 bp):
TAGTCAACAGAAGTTGTACTTGAAATGTTCTTAGCAAA
Found at i:122331476 original size:27 final size:27
Alignment explanation
Indices: 122331443--122331612 Score: 108
Period size: 21 Copynumber: 7.0 Consensus size: 27
122331433 GAGGTGATGG
122331443 AGATGGTGGAGGTGGGGACTTGTAGAC
1 AGATGGTGGAGGTGGGGACTTGTAGAC
* **
122331470 ATATGGTGGAGGT--GG---TG-AGGG
1 AGATGGTGGAGGTGGGGACTTGTAGAC
*
122331491 AGATGGTGGAGGTAGGGACTTGTAGAC
1 AGATGGTGGAGGTGGGGACTTGTAGAC
* **
122331518 ATATGGTGGAGGT--GG---TG-AGGG
1 AGATGGTGGAGGTGGGGACTTGTAGAC
*
122331539 AGATGGTGGAGGTGGAGACTTGTAGAC
1 AGATGGTGGAGGTGGGGACTTGTAGAC
* *
122331566 ATG-TGGTAGAGGTGGTGA--TG--G--
1 A-GATGGTGGAGGTGGGGACTTGTAGAC
122331587 AGATGGTGGAGGTGGGGACTTGTAGA
1 AGATGGTGGAGGTGGGGACTTGTAGA
122331613 TGTAAGGAGG
Statistics
Matches: 107, Mismatches: 17, Indels: 39
0.66 0.10 0.24
Matches are distributed among these distances:
20 1 0.01
21 42 0.39
22 4 0.04
23 6 0.06
25 7 0.07
26 4 0.04
27 42 0.39
28 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.50, T:0.24
Consensus pattern (27 bp):
AGATGGTGGAGGTGGGGACTTGTAGAC
Found at i:122331481 original size:48 final size:48
Alignment explanation
Indices: 122331423--122333696 Score: 2013
Period size: 48 Copynumber: 47.4 Consensus size: 48
122331413 CTAGTAAATG
* *
122331423 TAAGGAGGAGGAGGTGATGGAGATGGTGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122331471 TATGGTGGAGGTGGTGAGGGAGATGGTGGAGGTAGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122331519 TATGGTGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
** * * * **
122331567 TGTGGTAGAGGTGGTGATGGAGATGGTGGAGGTGGGGACTTGTAGATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * **
122331615 TAAGGAGGAGGAGGTGAGGGAGATGGTGGAGGTGGTGACTTGTAGATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * *
122331663 TAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGCGGTGACTTGTAGATA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122331711 TAAGGTGGAGGAGGTGAAGGAGATGGTGGAGGTGGGGACTTATAGACG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122331759 TAGGGTGGGGGAGGTGAGGGAGACGGTGGAGATGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122331807 TAGGGTGGAGGTGGTGAGGGAGATGGCGGAGGTGGGGACTTGTACACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * *
122331855 TAGGGTGGAGGCGGTGAGAGAGATGGCGGAGGTGTGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * *
122331903 TATGTTGGGGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTATAGACG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122331951 TAGGGTAGG-GGAGGTGAGGGAGACGGTGGAGGTAGAGACTTGTAGACA
1 TAAGGT-GGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122331999 TAAGGAGGAGGTGGTGATGGAGATGGTGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122332047 TAAGGTGGGGGAGGTGAAGGAGATGGAGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * * * **
122332095 TATGGTGGTGGAGGT---GGAGACTTGTAGATGTAAGGAGGTAGTGGTGAGGGA
1 TAAGGTGGAGGAGGTGAGGGAGA-TGGTGGAGGT--GG-GG-ACTTGT-AGACA
* * * * * * * ** **
122332146 GATGGTGGAGGTGGGGATTTGTAAAT-GTAAGGA-G-GGGGAGGTG-AG-GG
1 TAAGGTGGAGGAGGTGA--GGGAGATGGT--GGAGGTGGGGACTTGTAGACA
* * ** *
122332193 TGATGGTGGAGGAGGCGAAAGAGATGGTGGAGGTGGAGACTTGTAGACA
1 T-AAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * ** * * *
122332242 TATGATGGAGGAGGTGAATGAGATGGTGGGGGTGGAGACTTGTAAACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
** * * *
122332290 TATA-GTGGAGGAGGTGAATGAGATGGTGGGGGTGGAGACTTGTAAACA
1 TA-AGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122332338 TATGGTGGAGGAGGTGAAGGAGATGGTGGAGGTGGAGACTTGTAAACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * * * **
122332386 TATGGTGGAGGAGGCGAAGGAGATGGTGGTGGTGGAGACTTATAAATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * **
122332434 TAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * *
122332482 TAGGGGGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTATAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * * **
122332530 TATA-GTGGGGGAGGTGAAGAAGATGGTAGAGGTGGAGATTTGTAGATG
1 TA-AGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * * **
122332578 TAAGGAGGAAGAAGTGAGGGAGATGGTGGTGGAGGTGACTTGTAGATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122332626 TAGGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* *
122332674 TAAGGTGGAGGAGGTGAGGAAGACGGTGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * * **
122332722 TAAGGAGGA-GATGGTGACGGAGATGGTAGTGGAGGTGACTTGTAGATG
1 TAAGGTGGAGGA-GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122332770 TAGGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122332818 TAAAGTGGAGGAGGTGAGGGAGACGGTGGAGGTGGGGGCTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122332866 TAAGGAGGAGGTGGTGACGGAGATGGTGGAGGTGGGGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122332914 TATGGTGGGGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTATAGACG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122332962 TAGGGTGGGGGAGGTGAGGGAGACGGTGGAGGTGGGGACTTGTAAACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
** * * * * * * *
122333010 TAAGAAGAAGGTGGTGACGGAGACGGTGGAGGTGGAGACTTGTAAATA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
** * * *
122333058 TATTGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTATAAACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * *
122333106 TATGGTGGAGGAGGTGAAGGAGATGGTGGAGGTGGAGACTTGTAAATA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * ** * * * * **
122333154 TATGGTGGAGAAGGTGAATGAGATGGTGGTGGTGGAGACTTATAAATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * **
122333202 TAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGGGACTTATAGATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122333250 TAAGG-GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGAAA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * *
122333297 TATGGTGGGGGAGGTGAAGGAGATTGTGGAGGTGGGGATTTGTAGATA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * ** * *
122333345 TAAGGAGGAGGTGGTTTGGGAGAT-GTGGAGGTGGGGATTTGTAGATA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * ** * * **
122333392 TAAGGAGGAGGTGGTTTGGGAGATGGTGGAGGAGAGGACTTGTAGATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * * * * * **
122333440 TAAGGAGGTGGTGGTGAAGGTGATGGTGGAGGTGGTGATTTATAAATG
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * *
122333488 TAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGAGACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * *
122333536 TATGGTGGGGGAGGTGAAGGAGATGGTGGAGGTGGGGATTTGTAGATA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* ** * * * **
122333584 TAAGGAGGAGGTA-GTTTGGGAGATAGTGGAGGAGGCGACTTGTAGATG
1 TAAGGTGGAGG-AGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * * * * *
122333632 TAAGGAGGTGGTGGTGAAGGTGATGGTGGAGGTGGGAACTTGTAGACA
1 TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
* * *
122333680 TAGGGTGGTGGTGGTGA
1 TAAGGTGGAGGAGGTGA
122333697 CTTATAAACA
Statistics
Matches: 1869, Mismatches: 326, Indels: 62
0.83 0.14 0.03
Matches are distributed among these distances:
45 8 0.00
46 10 0.01
47 103 0.06
48 1707 0.91
49 7 0.00
50 7 0.00
51 16 0.01
52 2 0.00
54 2 0.00
55 2 0.00
56 5 0.00
ACGTcount: A:0.25, C:0.04, G:0.50, T:0.21
Consensus pattern (48 bp):
TAAGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACA
Found at i:122331718 original size:27 final size:27
Alignment explanation
Indices: 122331447--122331727 Score: 93
Period size: 27 Copynumber: 11.5 Consensus size: 27
122331437 TGATGGAGAT
* * *
122331447 GGTGGAGGTGGGGACTTGTAGACATAT
1 GGTGGAGGTGGTGACTTGTAGATATAA
* *
122331474 GGTGGAGGTGGTGA---G-GGAGAT--
1 GGTGGAGGTGGTGACTTGTAGATATAA
* *
122331495 GGTGGAGGTAGG-GACTTGTAGACATAT
1 GGTGGAGGT-GGTGACTTGTAGATATAA
* *
122331522 GGTGGAGGTGGTGA---G-GGAGAT--
1 GGTGGAGGTGGTGACTTGTAGATATAA
* * **
122331543 GGTGGAGGTGGAGACTTGTAGACATGT
1 GGTGGAGGTGGTGACTTGTAGATATAA
* *
122331570 GGTAGAGGTGGTGA--TG--GAGAT--
1 GGTGGAGGTGGTGACTTGTAGATATAA
* *
122331591 GGTGGAGGTGGGGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATATAA
* * * *
122331618 GGAGGAGGAGGTGA---G-GGAGAT--
1 GGTGGAGGTGGTGACTTGTAGATATAA
*
122331639 GGTGGAGGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATATAA
* * *
122331666 GGAGGAGGTGGTGA---G-GGAGAT--
1 GGTGGAGGTGGTGACTTGTAGATATAA
*
122331687 GGTGGAGGCGGTGACTTGTAGATATAA
1 GGTGGAGGTGGTGACTTGTAGATATAA
*
122331714 GGTGGAGGAGGTGA
1 GGTGGAGGTGGTGA
122331728 AGGAGATGGT
Statistics
Matches: 185, Mismatches: 37, Indels: 64
0.65 0.13 0.22
Matches are distributed among these distances:
21 60 0.32
22 2 0.01
23 20 0.11
24 8 0.04
25 20 0.11
26 2 0.01
27 73 0.39
ACGTcount: A:0.23, C:0.04, G:0.51, T:0.22
Consensus pattern (27 bp):
GGTGGAGGTGGTGACTTGTAGATATAA
Found at i:122332105 original size:78 final size:78
Alignment explanation
Indices: 122332022--122332168 Score: 204
Period size: 78 Copynumber: 1.9 Consensus size: 78
122332012 GTGATGGAGA
* * *
122332022 TGGTGGAGGTGGGGACTTGTAGACATAAGGTGGGGGAGGTGAAGGAGATGGAGGAGGTGGGGACT
1 TGGTGGAGGTGGAGACTTGTAGACATAAGGAGGGAGAGGTGAAGGAGATGGAGGAGGTGGGGACT
122332087 TGTAGACATATGG
66 TGTAGACATATGG
** * * * * *
122332100 TGGTGGAGGTGGAGACTTGTAGATGTAAGGAGGTAGTGGTGAGGGAGATGGTGGAGGTGGGGATT
1 TGGTGGAGGTGGAGACTTGTAGACATAAGGAGGGAGAGGTGAAGGAGATGGAGGAGGTGGGGACT
122332165 TGTA
66 TGTA
122332169 AATGTAAGGA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 59 1.00
ACGTcount: A:0.23, C:0.03, G:0.50, T:0.23
Consensus pattern (78 bp):
TGGTGGAGGTGGAGACTTGTAGACATAAGGAGGGAGAGGTGAAGGAGATGGAGGAGGTGGGGACT
TGTAGACATATGG
Found at i:122332186 original size:78 final size:78
Alignment explanation
Indices: 122332026--122332188 Score: 182
Period size: 78 Copynumber: 2.1 Consensus size: 78
122332016 TGGAGATGGT
* * *
122332026 GGAGGTGGGGACTTGTAGACATAAGGTGGGGGAGGTGAAGGAGATGGAGGAGGTGGGGACTTGTA
1 GGAGGTGGAGACTTGTAGACATAAGGAGGGAGAGGTGAAGGAGATGGAGGAGGTGGGGACTTGTA
* * * *
122332091 GACATATGGTGGT
66 AACATAAGGAGGG
** * * * * *
122332104 GGAGGTGGAGACTTGTAGATGTAAGGAGGTAGTGGTGAGGGAGATGGTGGAGGTGGGGATTTGTA
1 GGAGGTGGAGACTTGTAGACATAAGGAGGGAGAGGTGAAGGAGATGGAGGAGGTGGGGACTTGTA
**
122332169 AATGTAAGGAGGG
66 AACATAAGGAGGG
122332182 GGAGGTG
1 GGAGGTG
122332189 AGGGTGATGG
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
78 69 1.00
ACGTcount: A:0.25, C:0.03, G:0.51, T:0.21
Consensus pattern (78 bp):
GGAGGTGGAGACTTGTAGACATAAGGAGGGAGAGGTGAAGGAGATGGAGGAGGTGGGGACTTGTA
AACATAAGGAGGG
Found at i:122332394 original size:27 final size:27
Alignment explanation
Indices: 122332216--122332396 Score: 83
Period size: 27 Copynumber: 7.4 Consensus size: 27
122332206 GGCGAAAGAG
*
122332216 ATGGTGGAGGTGGAGACTTGTAGACAT
1 ATGGTGGAGGTGGAGACTTGTAAACAT
* * ** *
122332243 ATGATGGA---GGAG--GTG-AATGAG
1 ATGGTGGAGGTGGAGACTTGTAAACAT
*
122332264 ATGGTGGGGGTGGAGACTTGTAAACAT
1 ATGGTGGAGGTGGAGACTTGTAAACAT
* * ** *
122332291 ATAGTGGA---GGAG--GTG-AATGAG
1 ATGGTGGAGGTGGAGACTTGTAAACAT
*
122332312 ATGGTGGGGGTGGAGACTTGTAAACAT
1 ATGGTGGAGGTGGAGACTTGTAAACAT
* ** *
122332339 ATGGTGGA---GGAG--GTG-AAGGAG
1 ATGGTGGAGGTGGAGACTTGTAAACAT
122332360 ATGGTGGAGGTGGAGACTTGTAAACAT
1 ATGGTGGAGGTGGAGACTTGTAAACAT
122332387 ATGGTGGAGG
1 ATGGTGGAGG
122332397 AGGCGAAGGA
Statistics
Matches: 103, Mismatches: 33, Indels: 36
0.60 0.19 0.21
Matches are distributed among these distances:
21 28 0.27
22 6 0.06
24 24 0.23
26 6 0.06
27 39 0.38
ACGTcount: A:0.28, C:0.04, G:0.45, T:0.23
Consensus pattern (27 bp):
ATGGTGGAGGTGGAGACTTGTAAACAT
Found at i:122332731 original size:27 final size:27
Alignment explanation
Indices: 122332650--122332731 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 27
122332640 TGAGGGAGAT
122332650 GGTGGAGGTGGGGACTTGTAGACATAA
1 GGTGGAGGTGGGGACTTGTAGACATAA
* * * *
122332677 GGTGGAGGAGGTGA---G--GA-AGAC
1 GGTGGAGGTGGGGACTTGTAGACATAA
122332698 GGTGGAGGTGGGGACTTGTAGACATAA
1 GGTGGAGGTGGGGACTTGTAGACATAA
*
122332725 GGAGGAG
1 GGTGGAG
122332732 ATGGTGACGG
Statistics
Matches: 40, Mismatches: 9, Indels: 12
0.66 0.15 0.20
Matches are distributed among these distances:
21 14 0.35
22 2 0.05
24 2 0.05
26 2 0.05
27 20 0.50
ACGTcount: A:0.27, C:0.06, G:0.50, T:0.17
Consensus pattern (27 bp):
GGTGGAGGTGGGGACTTGTAGACATAA
Found at i:122332947 original size:27 final size:26
Alignment explanation
Indices: 122332917--122332998 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 26
122332907 GTAGACATAT
122332917 GGTGGGGGAGGTGAGGGAGATGGTGGA
1 GGTGGGGGAGGTGAGGGAGA-GGTGGA
* * * * *
122332944 GGT-GGGGA-CTTA--TAGACGTAG-
1 GGTGGGGGAGGTGAGGGAGAGGTGGA
122332965 GGTGGGGGAGGTGAGGGAGACGGTGGA
1 GGTGGGGGAGGTGAGGGAGA-GGTGGA
122332992 GGTGGGG
1 GGTGGGG
122332999 ACTTGTAAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 12
0.64 0.16 0.20
Matches are distributed among these distances:
21 3 0.08
22 8 0.21
23 5 0.13
25 5 0.13
26 8 0.21
27 10 0.26
ACGTcount: A:0.18, C:0.04, G:0.62, T:0.16
Consensus pattern (26 bp):
GGTGGGGGAGGTGAGGGAGAGGTGGA
Found at i:122333158 original size:27 final size:27
Alignment explanation
Indices: 122333080--122333163 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
122333070 GGTGAGGGAG
*
122333080 ATGGTGGAGGTGGAGACTTATAAACAT
1 ATGGTGGAGGTGGAGACTTGTAAACAT
* ** *
122333107 ATGGTGGA---GGAG--GTG-AAGGAG
1 ATGGTGGAGGTGGAGACTTGTAAACAT
*
122333128 ATGGTGGAGGTGGAGACTTGTAAATAT
1 ATGGTGGAGGTGGAGACTTGTAAACAT
122333155 ATGGTGGAG
1 ATGGTGGAG
122333164 AAGGTGAATG
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
21 11 0.26
22 1 0.02
24 8 0.19
26 2 0.05
27 20 0.48
ACGTcount: A:0.30, C:0.04, G:0.43, T:0.24
Consensus pattern (27 bp):
ATGGTGGAGGTGGAGACTTGTAAACAT
Found at i:122333354 original size:27 final size:27
Alignment explanation
Indices: 122333324--122333405 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
122333314 AGGAGATTGT
122333324 GGAGGTGGGGATTTGTAGATATAAGGA
1 GGAGGTGGGGATTTGTAGATATAAGGA
* * *
122333351 GGAGGT--GG-TTTG-GGAGAT---GT
1 GGAGGTGGGGATTTGTAGATATAAGGA
122333371 GGAGGTGGGGATTTGTAGATATAAGGA
1 GGAGGTGGGGATTTGTAGATATAAGGA
122333398 GGAGGTGG
1 GGAGGTGG
122333406 TTTGGGAGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
20 7 0.17
22 2 0.05
23 8 0.19
24 8 0.19
25 2 0.05
27 15 0.36
ACGTcount: A:0.24, C:0.00, G:0.50, T:0.26
Consensus pattern (27 bp):
GGAGGTGGGGATTTGTAGATATAAGGA
Found at i:122333362 original size:24 final size:24
Alignment explanation
Indices: 122333335--122333409 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
122333325 GAGGTGGGGA
122333335 TTTGTAGATATAAGGAGGAGGTGG
1 TTTGTAGATATAAGGAGGAGGTGG
* * *
122333359 TTTGGGAGATGT--GGAGGTGG-GG
1 TTT-GTAGATATAAGGAGGAGGTGG
122333381 ATTTGTAGATATAAGGAGGAGGTGG
1 -TTTGTAGATATAAGGAGGAGGTGG
122333406 TTTG
1 TTTG
122333410 GGAGATGGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
22 8 0.20
23 10 0.25
24 14 0.35
25 8 0.20
ACGTcount: A:0.24, C:0.00, G:0.45, T:0.31
Consensus pattern (24 bp):
TTTGTAGATATAAGGAGGAGGTGG
Found at i:122333385 original size:23 final size:23
Alignment explanation
Indices: 122333315--122333385 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 23
122333305 GGGAGGTGAA
122333315 GGAGATTGTGGAGGTGGGGATTT-
1 GGAGA-TGTGGAGGTGGGGATTTG
* * *
122333338 GTAGATATAAGGAGGAGGTGG-TTTG
1 GGAGATGT--GGAGGTGG-GGATTTG
122333363 GGAGATGTGGAGGTGGGGATTTG
1 GGAGATGTGGAGGTGGGGATTTG
122333386 TAGATATAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
22 4 0.11
23 15 0.41
24 10 0.27
25 8 0.22
ACGTcount: A:0.21, C:0.00, G:0.51, T:0.28
Consensus pattern (23 bp):
GGAGATGTGGAGGTGGGGATTTG
Found at i:122333422 original size:24 final size:23
Alignment explanation
Indices: 122333348--122333425 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 23
122333338 GTAGATATAA
122333348 GGAGGAGGTGGTTTGGGAGATGT
1 GGAGGAGGTGGTTTGGGAGATGT
* * *
122333371 GGAGGTGG-GGATTT-GTAGATAT
1 GGAGGAGGTGG-TTTGGGAGATGT
122333393 AAGGAGGAGGTGGTTTGGGAGATGGT
1 --GGAGGAGGTGGTTTGGGAGAT-GT
122333419 GGAGGAG
1 GGAGGAG
122333426 AGGACTTGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
22 8 0.19
23 10 0.23
24 17 0.40
25 7 0.16
26 1 0.02
ACGTcount: A:0.22, C:0.00, G:0.54, T:0.24
Consensus pattern (23 bp):
GGAGGAGGTGGTTTGGGAGATGT
Found at i:122333699 original size:27 final size:27
Alignment explanation
Indices: 122333656--122333708 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
122333646 TGAAGGTGAT
* *
122333656 GGTGGAGGTGGGAACTTGTAGACATAG
1 GGTGGAGGTGGGAACTTATAAACATAG
*
122333683 GGTGGTGGTGGTG-ACTTATAAACATA
1 GGTGGAGGTGG-GAACTTATAAACATA
122333709 AGGAGGTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.26, C:0.08, G:0.40, T:0.26
Consensus pattern (27 bp):
GGTGGAGGTGGGAACTTATAAACATAG
Found at i:122338845 original size:48 final size:48
Alignment explanation
Indices: 122338774--122339485 Score: 692
Period size: 48 Copynumber: 14.8 Consensus size: 48
122338764 ACGTCGCTAC
* * ** *
122338774 ACATAGAGTGGAGGAGGGGAGGGAGATGACGGAGGTGGAGACTTGTAA
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
*
122338822 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGCAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * * * *
122338870 ACATAGGGTGGAGGAGGAGAGGAAGATGGCGGGGGTGGAAACTTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* *
122338918 ACATAGGGTGGAAGAGGTGAGGGAGATGGTGGAGGTGGTGACTTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * * *
122338966 ACATAGGGTGGAGGAGGTGAGGGAAATGGCGGAGGTGGAGACTAT-CAA
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACT-TGTAG
* * * * *
122339014 ACATAGGGTGGAAGAGGAGAGGGAGATAGCGGGGGTGGAGACTTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* ** * *
122339062 ACATATGGCAGAGGAGGTGAGGGAGATGGTGGAAGTGGTGACTTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * * * * * * *
122339110 ACATAGGGTGGAAGTGGTGAAGGTGATGGTGGTGGTGGGGACTTATAA
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
** ** * * *
122339158 ATGTAAAGAGGAGGTGGTGAGGGAGATGGTGGAAGTGGAGACTTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * *
122339206 ACATAGGAGGGTGGTA-GTGGTGAAGGAGATGGTGGAGGTGGTGACTTGTAG
1 ACAT---AGGGTGG-AGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * * * * * *
122339257 ACATAGGGCGGAGGTGGTGAAGGTGATGGTGGTGGTGG-GACTTATAA
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
** * * * * *
122339304 ATGTAAGGAGGAGGTGGTGAGGGAGATGGTGGTGGTGGAGACCTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * * * * *
122339352 ACATATGGTGGTGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTATAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
* * * * * *
122339400 ACATAAGGTGGAGGAGGTGAGGGACATGGCGGAGATGAAAACTTGTAG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
***
122339448 ACATAGGGTGGAGGAGGTGAATAAGATGGTGGAGGTGG
1 ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGG
122339486 GGTGTAACAT
Statistics
Matches: 538, Mismatches: 118, Indels: 16
0.80 0.18 0.02
Matches are distributed among these distances:
47 41 0.08
48 455 0.85
49 1 0.00
51 40 0.07
52 1 0.00
ACGTcount: A:0.27, C:0.05, G:0.48, T:0.19
Consensus pattern (48 bp):
ACATAGGGTGGAGGAGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
Found at i:122340800 original size:44 final size:45
Alignment explanation
Indices: 122340704--122340827 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 45
122340694 ACAGAAATGG
* * * *
122340704 GCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGATAGGATTGA
1 GCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAA
* *
122340750 GCCATGTAAGTCCATATT-ATATATGGCATTGGAGACATGAATAA
1 GCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAA
** * * *
122340794 TTCATGTAAGTCCATGTCAAAAACATGGCATTGG
1 GCCATGTAAGTCCATAT-TAAAATATGGCATTGG
122340828 TAGGATATTG
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
44 34 0.53
46 30 0.47
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (45 bp):
GCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAA
Found at i:122341619 original size:98 final size:97
Alignment explanation
Indices: 122341497--122341690 Score: 352
Period size: 98 Copynumber: 2.0 Consensus size: 97
122341487 TATTTTCTTA
*
122341497 TGGAATAAGCAAAAAGGTAAAGGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGT
1 TGGAATAAGCAAAAAGGTAAAGGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGAT
122341562 CAGAGCAATTTCTGGATCCCCTGTTTCAACTT
66 CAGAGCAATTTCTGGATCCCCTGTTTCAACTT
122341594 TGGAATAAGCAAAAAAGGTAAAGGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGA
1 TGGAATAAGC-AAAAAGGTAAAGGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGA
* *
122341659 TCAGAGCGATTTCTGGATCCCTTGTTTCAACT
65 TCAGAGCAATTTCTGGATCCCCTGTTTCAACT
122341691 AATTATAAGG
Statistics
Matches: 93, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
97 10 0.11
98 83 0.89
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33
Consensus pattern (97 bp):
TGGAATAAGCAAAAAGGTAAAGGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGAT
CAGAGCAATTTCTGGATCCCCTGTTTCAACTT
Found at i:122349049 original size:13 final size:14
Alignment explanation
Indices: 122349031--122349061 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
122349021 ATGTATGAAT
122349031 ATATACATATA-TA
1 ATATACATATATTA
122349044 ATATACATATATTA
1 ATATACATATATTA
122349058 ATAT
1 ATAT
122349062 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:122349123 original size:21 final size:20
Alignment explanation
Indices: 122349097--122349145 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
122349087 AACAACCATT
122349097 AATAATAATAATACTTAA-AAA
1 AATAATAAT-ATA-TTAATAAA
122349118 AATAATTAATATATTAATAAA
1 AATAA-TAATATATTAATAAA
122349139 AATAATA
1 AATAATA
122349146 GTAACAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.23
21 16 0.62
22 4 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AATAATAATATATTAATAAA
Found at i:122349155 original size:24 final size:21
Alignment explanation
Indices: 122349097--122349157 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 21
122349087 AACAACCATT
*
122349097 AATAATA-ATAATACTTAAAAA
1 AATAATATAAAATA-TTAAAAA
*
122349118 AATAAT-TAATATATTAATAAA
1 AATAATATAAAATATTAA-AAA
122349139 AATAATAGTAACAATATTA
1 AATAATA-TAA-AATATTA
122349158 GTAATATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 4 0.12
21 19 0.59
23 3 0.09
24 6 0.19
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (21 bp):
AATAATATAAAATATTAAAAA
Found at i:122349636 original size:15 final size:16
Alignment explanation
Indices: 122349618--122349651 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
122349608 AAAAAGAAGA
122349618 GAGAAAAGGAGAG-GG
1 GAGAAAAGGAGAGAGG
122349633 GAG-AAAGGAGAGAGG
1 GAGAAAAGGAGAGAGG
122349648 GAGA
1 GAGA
122349652 GGGGAGAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (16 bp):
GAGAAAAGGAGAGAGG
Found at i:122350103 original size:138 final size:138
Alignment explanation
Indices: 122349899--122350176 Score: 547
Period size: 138 Copynumber: 2.0 Consensus size: 138
122349889 TTTGCTTTTG
122349899 TTTTCCTTCCGATATTGCTTCTGTTTTTCTGAGATTGTTTGAATCTCAAACTATACTGCTTGTGA
1 TTTTCCTTCCGATATTGCTTCTGTTTTTCTGAGATTGTTTGAATCTCAAACTATACTGCTTGTGA
122349964 ATATTGGAGGTTGTTGTTTCTTTAATCGTTGAAATTTTTTTGAACTCTCTGTATTCTCAAAAACT
66 ATATTGGAGGTTGTTGTTTCTTTAATCGTTGAAATTTTTTTGAACTCTCTGTATTCTCAAAAACT
122350029 CCAACCCT
131 CCAACCCT
122350037 TTTTCCTTCCGATATTGCTTCTGTTTTTCTGAGATTGTTTGAATCTCAAACTATACTGCTTGTGA
1 TTTTCCTTCCGATATTGCTTCTGTTTTTCTGAGATTGTTTGAATCTCAAACTATACTGCTTGTGA
*
122350102 ATATTGGAGGTTGTTGTTTCTTTAATCGTTGAAATTTTTTTGAACTCTCTGTATTCTTAAAAACT
66 ATATTGGAGGTTGTTGTTTCTTTAATCGTTGAAATTTTTTTGAACTCTCTGTATTCTCAAAAACT
122350167 CCAACCCT
131 CCAACCCT
122350175 TT
1 TT
122350177 ACAAAGTATT
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 139 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (138 bp):
TTTTCCTTCCGATATTGCTTCTGTTTTTCTGAGATTGTTTGAATCTCAAACTATACTGCTTGTGA
ATATTGGAGGTTGTTGTTTCTTTAATCGTTGAAATTTTTTTGAACTCTCTGTATTCTCAAAAACT
CCAACCCT
Found at i:122350862 original size:46 final size:44
Alignment explanation
Indices: 122350804--122350919 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 44
122350794 GACAGGACAG
* *
122350804 GACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGA
* *
122350850 GACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGA
* **
122350894 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGAGCCATGTAAGTCCAT
122350920 GTCAAAGACA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.56
46 27 0.44
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
GACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGA
Found at i:122350900 original size:44 final size:45
Alignment explanation
Indices: 122350804--122350938 Score: 155
Period size: 46 Copynumber: 3.0 Consensus size: 45
122350794 GACAGGACAG
* *
122350804 GACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGA
* *
122350850 GACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGA
* ** * * *
122350894 GACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 GACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
122350939 TAGGATATTG
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.48
45 1 0.01
46 38 0.51
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
GACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGA
Found at i:122355040 original size:48 final size:48
Alignment explanation
Indices: 122354950--122356401 Score: 1418
Period size: 48 Copynumber: 29.9 Consensus size: 48
122354940 TTTAGTAATA
* * * * * *
122354950 TGGATGTGGAGGCTTGTAGACATAAGGTGGAGGAGGAGAAGGAGAAGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * *
122354998 TGGAGGTGGGGACCTGTACACATATGGTGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * *
122355046 TGGAGGTGGGGACTTGTAAACATAGGGTGGAGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * ** * * * *
122355094 TGGTGGTGGTGACTTATAAATGTAAGGAGGAGGTAGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * *
122355142 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGATGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122355190 TGGAGGTGGAGACTTGTAAACATAAGGG-GGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAGACAT-AGGGTGGAGGTGGTGAAGGAGATGG
* *
122355238 TGGAGGTGGGGACTTGTAGACATAGGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * *
122355286 TGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAATGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * *
122355334 TGGAGGTGGGGACTTGTACACATAAGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * *
122355382 CGGAGGTGGAGACTTGTAGACATAGGGTAGAGGAGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * *
122355430 AT-AAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTGAGGGAGATGG
1 -TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122355478 TGGAGGTGGTGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * ** * * *
122355526 TGGTGGTGGTGACTTATAAATGTAAGGAGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
*
122355574 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122355622 TGGAGGTGGGGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * ** * * *
122355670 TGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122355718 TGGAGGTGGAGACTTGTAGACATAGGGTGGAAGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * *
122355766 TAGAGGTGGAGATTTGTAGACATGGGGTGGCGGTGGTGAAGGTGATGGTGGTGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAA-G-GA----GATGG
* * * * * * * * *
122355820 TGGTGGTGGAGACCTATAAATATAAGGAGAAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * *
122355868 TGGATGTGGAGACTTGTAGACATAGGGTGGAGGAGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122355916 TGGAGGTGGTGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * ** * * *
122355964 TGGTGGTGGTGACTTATAAATGTAAGGAGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
*
122356012 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122356060 TGGAGGTGGAGATTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * * * *
122356108 TGGTGGTGGTG-GTGGTGGTGGAGACCTATAAATATAAGGAGGAGGTGGTGAGGGTGATGG
1 TGGAGGTGGAGACT--T-GT--AGA-C-------ATAGGGTGGAGGTGGTGAAGGAGATGG
* *
122356168 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTGAAAGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * *
122356216 TGGAGGTGGTGACTTGTAGGCATAAGG-CGACGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGA-GGTGGTGAAGGAGATGG
* * * * * * * * *
122356264 TGGTGGTGGGGACTTATAAACATATGGAGGTGGTGGAGATGGAGATGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * * * * *
122356312 TGGAGGTGGGGACTTGTACACATAAGGAGGTGGAGGGGAAGGAGAAGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
* * * * * *
122356360 TGGCGGTGGAGACTTATAGGCATACGGTGGTGGAGGTGAAGG
1 TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGG
122356402 CGGTGGTAAA
Statistics
Matches: 1168, Mismatches: 210, Indels: 52
0.82 0.15 0.04
Matches are distributed among these distances:
47 8 0.01
48 1071 0.92
49 6 0.01
50 4 0.00
52 5 0.00
53 2 0.00
54 31 0.03
55 1 0.00
56 3 0.00
58 2 0.00
59 1 0.00
60 33 0.03
61 1 0.00
ACGTcount: A:0.25, C:0.04, G:0.49, T:0.21
Consensus pattern (48 bp):
TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGAGATGG
Found at i:122355165 original size:144 final size:144
Alignment explanation
Indices: 122354971--122356401 Score: 1808
Period size: 144 Copynumber: 9.8 Consensus size: 144
122354961 GCTTGTAGAC
* * * * * * * * *
122354971 ATAAGGTGGAGGAGGAGAAGGAGAAGGTGGAGGTGGGGACCTGTACACATATGGTGGAGGAGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* *
122355036 AAGGAGATGGTGGAGGTGGGGACTTGTAAACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
122355101 GGTGACTTATAAAT
131 GGTGACTTATAAAT
* * * *
122355115 GTAAGGAGGAGGTAGTGAGGGAGATGGTGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* * * * *
122355180 ATGGAGATGGTGGAGGTGGAGACTTGTAAACATAAGGG-GGAGGAGGTGAAGGAGATGGTGGAGG
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACAT-AGGGTGGAGGTGGTGAAGGTGATGGTGGTGG
* * * *
122355244 TGGGGACTTGTAGAC
130 TGGTGACTTATAAAT
* * * * *
122355259 ATAGGGTGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* * * * * * * *
122355324 AATGAGATGGTGGAGGTGGGGACTTGTACACATAAGGTGGAGGTGGTGAGGGAGATGGCGGAGGT
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
* * * *
122355389 GGAGACTTGTAGAC
131 GGTGACTTATAAAT
* * *
122355403 ATAGGGTA-GAGGAGGTGAGGGAGATGGAT-AAGGTGGAGACTTGTAGACATAGGGTGGAGGAGG
1 ATAAGG-AGGAGGTGGTGAGGGAGATGG-TGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGG
* *
122355466 TGAGGGAGATGGTGGAGGTGGTGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTG
64 TGAAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTG
122355531 GTGGTGACTTATAAAT
129 GTGGTGACTTATAAAT
*
122355547 GTAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
*
122355612 AAGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
*
122355677 GGAGACTTATAAAT
131 GGTGACTTATAAAT
* * *
122355691 GTAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAAGTGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* * * * *
122355756 AGGGAGATGGTAGAGGTGGAGATTTGTAGACATGGGGTGGCGGTGGTGAAGGTGATGGTGGTGGT
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGA---TGGTGGT
*
122355821 GGTGGTGGAGACCTATAAAT
128 GGTGGT---GACTTATAAAT
* *
122355841 ATAAGGAGAAGGTGGTGAGGGAGATGGTGGATGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* *
122355906 AGGGAGATGGTGGAGGTGGTGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
122355971 GGTGACTTATAAAT
131 GGTGACTTATAAAT
* *
122355985 GTAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* *
122356050 AGGGAGATGGTGGAGGTGGAGATTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGA---------T
*
122356115 GGTGGTGGTGGTGGAGACCTATAAAT
122 GGTGGTGGTGGT---GACTTATAAAT
*
122356141 ATAAGGAGGAGGTGGTGAGGGTGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* * * * *
122356206 AAAGAGATGGTGGAGGTGGTGACTTGTAGGCATAAGG-CGACGGTGGTGAAGGTGATGGTGGTGG
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGA-GGTGGTGAAGGTGATGGTGGTGG
* *
122356270 TGGGGACTTATAAAC
130 TGGTGACTTATAAAT
* * * * * * * * * *
122356285 ATATGGAGGTGGTGGAGATGGAGATGGTGGAGGTGGGGACTTGTACACATAAGGAGGTGGAGGGG
1 ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
* * * * * * *
122356350 AAGGAGAAGGTGGCGGTGGAGACTTATAGGCATACGGTGGTGGAGGTGAAGG
66 AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGG
122356402 CGGTGGTAAA
Statistics
Matches: 1140, Mismatches: 121, Indels: 52
0.87 0.09 0.04
Matches are distributed among these distances:
143 5 0.00
144 840 0.74
145 6 0.01
147 37 0.03
150 120 0.11
153 13 0.01
155 2 0.00
156 117 0.10
ACGTcount: A:0.25, C:0.04, G:0.49, T:0.21
Consensus pattern (144 bp):
ATAAGGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGAGGTG
AAGGAGATGGTGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTGGTGAAGGTGATGGTGGTGGT
GGTGACTTATAAAT
Done.