Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 408 of 410
Found at i:123090993 original size:20 final size:21
Alignment explanation
Indices: 123090968--123091012 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
123090958 TATCGTATGA
*
123090968 AATTTTTTAAGAT-TTTAAAT
1 AATTTTTTAAAATATTTAAAT
123090988 AATTTTTTAAAATATTTAAAT
1 AATTTTTTAAAATATTTAAAT
123091009 AATT
1 AATT
123091013 ATATATTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
AATTTTTTAAAATATTTAAAT
Found at i:123097254 original size:28 final size:29
Alignment explanation
Indices: 123097202--123097264 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 29
123097192 TGTTATTTAA
123097202 TAATAATTTAAACAAAATTTTTTAAATAATT
1 TAATAATTTAAACAAAA--TTTTAAATAATT
* *
123097233 TAATAATTTAAATAAAA-TTTAAATATTT
1 TAATAATTTAAACAAAATTTTAAATAATT
123097261 TAAT
1 TAAT
123097265 TATTATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 14 0.47
31 16 0.53
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (29 bp):
TAATAATTTAAACAAAATTTTAAATAATT
Found at i:123097260 original size:8 final size:9
Alignment explanation
Indices: 123097222--123097263 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
123097212 AACAAAATTT
123097222 TTTAAATAA
1 TTTAAATAA
123097231 TTT-AATAA
1 TTTAAATAA
123097239 TTTAAATAAAA
1 TTTAAAT--AA
*
123097250 TTTAAATAT
1 TTTAAATAA
123097259 TTTAA
1 TTTAA
123097264 TTATTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 8 0.28
9 12 0.41
11 9 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTTAAATAA
Found at i:123105226 original size:42 final size:42
Alignment explanation
Indices: 123105169--123105453 Score: 252
Period size: 42 Copynumber: 6.8 Consensus size: 42
123105159 TCACGTGAAA
* * *
123105169 TTCTATAGTACCGATCATCAGGTGAGTAAGAACGTTCCCGCC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* * *
123105211 TTCTATAGTGTCGATCCTCAGGAGAGTAAGAACGGTCCCGCC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* * *
123105253 TTCTATAGTATCGGTCCTCAGGAGAGTAAGAACGATCCCGTC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* * * * *
123105295 TGC-AGTGGTAACGATCATCAGGAGAGTAA-AACCTATCACGCC
1 TTCTA-TAGTATCGATCATCAGGAGAGTAAGAA-CGATCCCGCC
* * *
123105337 TTCTATAGTATCTATCATCGGGAGAGTAAGAAC-AGTCCCGTC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGA-TCCCGCC
* * * * * * * * *
123105379 TACGATAATAACGATCATAAGGTGAGTAGGACCGATCACGCC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* * * *
123105421 TTCGATAGTATCGATCTTCAGGTGAGTAGGAAC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAAC
123105454 AGTAACGATA
Statistics
Matches: 195, Mismatches: 42, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
41 4 0.02
42 187 0.96
43 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (42 bp):
TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
Found at i:123105310 original size:84 final size:84
Alignment explanation
Indices: 123105169--123105453 Score: 279
Period size: 84 Copynumber: 3.4 Consensus size: 84
123105159 TCACGTGAAA
* * * * * ** *
123105169 TTCTATAGTACCGATCATCAGGTGAGTAAGAACGTTCCCGCCTTCTATAGTGTCGATCCTCAGGA
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGTCTGCTATAGTAACGATCATCAGGA
* *
123105234 GAGTAAGAA-CGGTCCCGCC
66 GAGTAA-AACCGATCACGCC
* * *
123105253 TTCTATAGTATCGGTCCTCAGGAGAGTAAGAACGATCCCGTCTGC-AGTGGTAACGATCATCAGG
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGTCTGCTA-TAGTAACGATCATCAGG
*
123105317 AGAGTAAAACCTATCACGCC
65 AGAGTAAAACCGATCACGCC
* * * * * *
123105337 TTCTATAGTATCTATCATCGGGAGAGTAAGAAC-AGTCCCGTCTACGATAATAACGATCATAAGG
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGA-TCCCGTCTGCTATAGTAACGATCATCAGG
* **
123105401 TGAGTAGGACCGATCACGCC
65 AGAGTAAAACCGATCACGCC
* * * *
123105421 TTCGATAGTATCGATCTTCAGGTGAGTAGGAAC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAAC
123105454 AGTAACGATA
Statistics
Matches: 165, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
83 4 0.02
84 160 0.97
85 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (84 bp):
TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGTCTGCTATAGTAACGATCATCAGGA
GAGTAAAACCGATCACGCC
Found at i:123105436 original size:126 final size:125
Alignment explanation
Indices: 123105173--123105453 Score: 285
Period size: 126 Copynumber: 2.2 Consensus size: 125
123105163 GTGAAATTCT
* * * * *
123105173 ATAGTACCGATCATCAGGTGAGTAAGAACGTTCCCGCCTTCTATAGTGTCGATCCTCAGGAGAGT
1 ATAGTAACGATCATCAGGTGAGTAAGAACCTTCACGCCTTCTATAGTATCGATCATCAGGAGAGT
* * * * * * * * * *
123105238 AAGAACGGTCCCGCCTTCTATAGTATCGGTCCTCAGGAGAGTAAGAACGATCCCGTCTGC
66 AAGAACAGTCCCGCCTACGATAATAACGATCATAAGGAGAGTAAGAACGATCACGCCTGC
* * * *
123105298 AGTGGTAACGATCATCAGGAGAGTAA-AACCTATCACGCCTTCTATAGTATCTATCATCGGGAGA
1 A-TAGTAACGATCATCAGGTGAGTAAGAACCT-TCACGCCTTCTATAGTATCGATCATCAGGAGA
* * * * *
123105362 GTAAGAACAGTCCCGTCTACGATAATAACGATCATAAGGTGAGTAGGACCGATCACGCCTTC
64 GTAAGAACAGTCCCGCCTACGATAATAACGATCATAAGGAGAGTAAGAACGATCACGCCTGC
* * *
123105424 GATAGTATCGATCTTCAGGTGAGTAGGAAC
1 -ATAGTAACGATCATCAGGTGAGTAAGAAC
123105454 AGTAACGATA
Statistics
Matches: 123, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
125 5 0.04
126 114 0.93
127 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (125 bp):
ATAGTAACGATCATCAGGTGAGTAAGAACCTTCACGCCTTCTATAGTATCGATCATCAGGAGAGT
AAGAACAGTCCCGCCTACGATAATAACGATCATAAGGAGAGTAAGAACGATCACGCCTGC
Found at i:123108096 original size:10 final size:10
Alignment explanation
Indices: 123108081--123108105 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
123108071 AACGATTTTC
123108081 TTTTTATTTA
1 TTTTTATTTA
123108091 TTTTTATTTA
1 TTTTTATTTA
123108101 TTTTT
1 TTTTT
123108106 TTAATAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:123109652 original size:19 final size:19
Alignment explanation
Indices: 123109630--123109666 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
123109620 ATCATTTTCA
123109630 AAAAATTT-AAAATGTTTAT
1 AAAAATTTCAAAAT-TTTAT
123109649 AAAAATTTCAAAATTTTA
1 AAAAATTTCAAAATTTTA
123109667 AATTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (19 bp):
AAAAATTTCAAAATTTTAT
Found at i:123109661 original size:27 final size:27
Alignment explanation
Indices: 123109631--123109683 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
123109621 TCATTTTCAA
123109631 AAAATTTAAAATGTTTATAAAAATTTC
1 AAAATTTAAAATGTTTATAAAAATTTC
* * *
123109658 AAAATTTTAAATTTTTTTAAAAATTT
1 AAAATTTAAAATGTTTATAAAAATTT
123109684 TATAAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (27 bp):
AAAATTTAAAATGTTTATAAAAATTTC
Found at i:123120865 original size:59 final size:57
Alignment explanation
Indices: 123120768--123120910 Score: 146
Period size: 59 Copynumber: 2.4 Consensus size: 57
123120758 ACCTAACTTC
* * ** * *
123120768 TTTT-TTTTTTTGTCACTCAACTATAAAAAGTTATAAAATGGTCAGCCAACTATTAGTAA
1 TTTTCTTTTTTGGTCAC-CAACTATAAAAAGTTACAAAATGACCACCCAACTA-T-GCAA
*
123120827 TTTTCTTTTTTGGTCACCAGCTA-AGAAAAGTTACAAAATGACCACCCAACTATGCAA
1 TTTTCTTTTTTGGTCACCAACTATA-AAAAGTTACAAAATGACCACCCAACTATGCAA
123120884 TTCTATCTTTTTTGGTCACCCAACTAT
1 TT-T-TCTTTTTTGGTCA-CCAACTAT
123120911 CTTGGATTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
57 5 0.07
58 3 0.04
59 45 0.64
60 17 0.24
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (57 bp):
TTTTCTTTTTTGGTCACCAACTATAAAAAGTTACAAAATGACCACCCAACTATGCAA
Found at i:123133293 original size:21 final size:21
Alignment explanation
Indices: 123133264--123133303 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
123133254 TTGAAGTCAC
*
123133264 TTTGGTACTTAAGCTTTTTAA
1 TTTGATACTTAAGCTTTTTAA
* *
123133285 TTTGATACTTGAGGTTTTT
1 TTTGATACTTAAGCTTTTT
123133304 TTTGTCCAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.55
Consensus pattern (21 bp):
TTTGATACTTAAGCTTTTTAA
Found at i:123137792 original size:31 final size:31
Alignment explanation
Indices: 123137757--123137825 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
123137747 CCTTAACAAC
123137757 CAATGACTTAAATAAAAAC-TTCGAGATAGCT
1 CAATGACTTAAATAAAAACTTTCGA-ATAGCT
* * *
123137788 CAATGATTTAAATGAAAACTTTCGAATAGTT
1 CAATGACTTAAATAAAAACTTTCGAATAGCT
123137819 CAATGAC
1 CAATGAC
123137826 CATTTTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.29
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCGAATAGCT
Found at i:123138450 original size:6 final size:6
Alignment explanation
Indices: 123138439--123138463 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
123138429 TTACATGTCT
123138439 CTCTCA CTCTCA CTCTCA CTCTCA C
1 CTCTCA CTCTCA CTCTCA CTCTCA C
123138464 AAGGATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCTCA
Found at i:123142038 original size:26 final size:26
Alignment explanation
Indices: 123142009--123142059 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
123141999 ACATACATAA
*
123142009 TTTGAATAATATACTGTTATGGTTTG
1 TTTGAATAATACACTGTTATGGTTTG
*
123142035 TTTGAATAATACACTGTTGTGGTTT
1 TTTGAATAATACACTGTTATGGTTT
123142060 ACGTAATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.06, G:0.20, T:0.49
Consensus pattern (26 bp):
TTTGAATAATACACTGTTATGGTTTG
Found at i:123142350 original size:128 final size:130
Alignment explanation
Indices: 123142174--123142424 Score: 357
Period size: 128 Copynumber: 1.9 Consensus size: 130
123142164 ATACATACAT
* * *
123142174 AGTTTGAATAATATACCATTGTGGTTTACGTAATTGGGATGATGGTAGCTGCAGAATGGA-TATT
1 AGTTTGAATAATATACCATTGTGGTTAACATAACTGGGATGATGGTAGCTGCAGAATGGACT-TT
* * *
123142238 GATTTGGGTTTTGATTCCAAGTCACTGATTCACC-TTTTTTT-TTGTTATATACGTATACATATT
65 GATTTGGGGTTTGAGTCCAAGTCACTGATTCACCATTTTTTTCTTGTTATATACATATACATATT
123142301 C
130 C
* **
123142302 AGTTTGAATCATATACTTTTGTGGGTTAACATAACTGGGATGAT-GTAGCTGCAGAATGGACTTT
1 AGTTTGAATAATATACCATTGT-GGTTAACATAACTGGGATGATGGTAGCTGCAGAATGGACTTT
* *
123142366 GGTTTGGGGTTTGAGTCCAAGTCACTGATTCGCCATTTTTTTCTTGTTATATACATATA
65 GATTTGGGGTTTGAGTCCAAGTCACTGATTCACCATTTTTTTCTTGTTATATACATATA
123142425 TGTGTATGAT
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
128 67 0.62
129 26 0.24
130 15 0.14
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (130 bp):
AGTTTGAATAATATACCATTGTGGTTAACATAACTGGGATGATGGTAGCTGCAGAATGGACTTTG
ATTTGGGGTTTGAGTCCAAGTCACTGATTCACCATTTTTTTCTTGTTATATACATATACATATTC
Found at i:123151678 original size:31 final size:31
Alignment explanation
Indices: 123151627--123151695 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
123151617 TTACAAAATG
* * *
123151627 GTCATTAAATTATTCGAAAGTT-TTCATTTAA
1 GTCACTAAAATATTCAAAAGTTCTT-ATTTAA
123151658 GTCACTAAAATATTCAAAAGTTCTTATTTAA
1 GTCACTAAAATATTCAAAAGTTCTTATTTAA
123151689 GTCACTA
1 GTCACTA
123151696 GACTATTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 32 0.94
32 2 0.06
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.41
Consensus pattern (31 bp):
GTCACTAAAATATTCAAAAGTTCTTATTTAA
Found at i:123152900 original size:15 final size:17
Alignment explanation
Indices: 123152874--123152905 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
123152864 TTTTATAACT
123152874 TTTTATATAA-TTAATA
1 TTTTATATAATTTAATA
123152890 TTTTA-ATAATTTAATA
1 TTTTATATAATTTAATA
123152906 GTTGAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATATAATTTAATA
Found at i:123154842 original size:2 final size:2
Alignment explanation
Indices: 123154835--123154867 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
123154825 AATGAAATTA
123154835 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
123154868 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:123155152 original size:21 final size:21
Alignment explanation
Indices: 123155119--123155162 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
123155109 TTCGAGAGTG
*
123155119 ATAAATTGGTAATTCT-TTTAT
1 ATAAATTGATAATT-TGTTTAT
*
123155140 ATAAATTTATAATTTGTTTAT
1 ATAAATTGATAATTTGTTTAT
123155161 AT
1 AT
123155163 TTTTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (21 bp):
ATAAATTGATAATTTGTTTAT
Found at i:123161431 original size:6 final size:6
Alignment explanation
Indices: 123161420--123161445 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
123161410 AAACAATAAG
123161420 AAAGAA AAAGAA AAAGAA AAAGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AA
123161446 CAAAATAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:123162852 original size:18 final size:18
Alignment explanation
Indices: 123162820--123162871 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
123162810 CTGAGATGAG
123162820 AATAAATTT--TTAATTA
1 AATAAATTTAATTAATTA
*
123162836 AATAAATTTAATTAATTG
1 AATAAATTTAATTAATTA
*
123162854 AA-AAGTTTAAATTAATTA
1 AATAAATTT-AATTAATTA
123162872 CAACTGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 9 0.30
17 5 0.17
18 16 0.53
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
AATAAATTTAATTAATTA
Found at i:123164799 original size:31 final size:31
Alignment explanation
Indices: 123164764--123164824 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
123164754 GCTCAGTAAG
* ** *
123164764 TTAAATGAAAATTTTTGAATAGTTTAATGAT
1 TTAAATGAAAACTTTCAAATAATTTAATGAT
123164795 TTAAATGAAAACTTTCAAATAATTTAATGA
1 TTAAATGAAAACTTTCAAATAATTTAATGA
123164825 CCCATTTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (31 bp):
TTAAATGAAAACTTTCAAATAATTTAATGAT
Found at i:123167857 original size:82 final size:83
Alignment explanation
Indices: 123167728--123167881 Score: 283
Period size: 82 Copynumber: 1.9 Consensus size: 83
123167718 TCGCATCAAC
*
123167728 AACAATACTTGGTTTTCACATTGACATTAAATCAAACATATAGAATGCAT-AAAAAACAACACTC
1 AACAATACTTGGTTTTCACATTGACATTAAATCAAACACATAGAATGCATAAAAAAACAACACTC
123167792 TTTTCATGTAGCATCCAT
66 TTTTCATGTAGCATCCAT
123167810 AACAATACTTGGTTTTCACATTGACATTAAATCAAACACATAGAATGCATAAAAAAAACAACACT
1 AACAATACTTGGTTTTCACATTGACATTAAATCAAACACATAGAATGCAT-AAAAAAACAACACT
123167875 CTTTTCA
65 CTTTTCA
123167882 CGTATATTTC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
82 49 0.71
84 20 0.29
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (83 bp):
AACAATACTTGGTTTTCACATTGACATTAAATCAAACACATAGAATGCATAAAAAAACAACACTC
TTTTCATGTAGCATCCAT
Found at i:123169222 original size:54 final size:55
Alignment explanation
Indices: 123169149--123169253 Score: 185
Period size: 54 Copynumber: 1.9 Consensus size: 55
123169139 TACAACCATC
123169149 CACATAGTGTATGTGTTTTACTATATATGTGTGGATGATATGCTGAAAATGGCAAT
1 CACATAGTG-ATGTGTTTTACTATATATGTGTGGATGATATGCTGAAAATGGCAAT
*
123169205 CACATAGTG-TGTGTTTTACTATATATGTGTGGATGATATTCTGAAAATG
1 CACATAGTGATGTGTTTTACTATATATGTGTGGATGATATGCTGAAAATG
123169254 ATTGCCATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
54 39 0.81
56 9 0.19
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (55 bp):
CACATAGTGATGTGTTTTACTATATATGTGTGGATGATATGCTGAAAATGGCAAT
Found at i:123172137 original size:12 final size:11
Alignment explanation
Indices: 123172121--123172218 Score: 53
Period size: 11 Copynumber: 8.8 Consensus size: 11
123172111 TATATTTTAG
123172121 ATTTTTTTAAA
1 ATTTTTTTAAA
*
123172132 ATTTTTTTATA
1 ATTTTTTTAAA
*
123172143 ATTTTTTAAAA
1 ATTTTTTTAAA
*
123172154 ATATAAATTTT-AA
1 AT-T--TTTTTAAA
123172167 ATTTTTTTATAA
1 ATTTTTTTA-AA
* *
123172179 A-TATTTT-GA
1 ATTTTTTTAAA
123172188 A--TTTTTAGAA
1 ATTTTTTTA-AA
*
123172198 ATTATTTTAAA
1 ATTTTTTTAAA
123172209 ATATTTTTTA
1 AT-TTTTTTA
123172219 TTTTGTAATT
Statistics
Matches: 65, Mismatches: 12, Indels: 19
0.68 0.12 0.20
Matches are distributed among these distances:
8 4 0.06
9 2 0.03
10 6 0.09
11 30 0.46
12 16 0.25
13 4 0.06
14 3 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:123172190 original size:21 final size:20
Alignment explanation
Indices: 123172097--123172193 Score: 61
Period size: 21 Copynumber: 4.5 Consensus size: 20
123172087 TTTTTAGATG
* *
123172097 TTAACTTTTTTATATATATT
1 TTAATTTTTTTATAAATATT
*
123172117 TTAGATTTTTTTA-AAATTTTTT
1 TTA-ATTTTTTTATAAA--TATT
* *
123172139 TATAATTTTTTAAAAATATAAATT
1 T-TAATTTTTTTATAA-AT--ATT
123172163 TTAAATTTTTTTATAAATATT
1 TT-AATTTTTTTATAAATATT
123172184 TTGAATTTTT
1 TT-AATTTTT
123172194 AGAAATTATT
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
20 5 0.08
21 20 0.33
22 13 0.22
23 7 0.12
24 15 0.25
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (20 bp):
TTAATTTTTTTATAAATATT
Found at i:123173721 original size:20 final size:20
Alignment explanation
Indices: 123173696--123173736 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
123173686 ACTTACATAT
123173696 TGAATTTGGAGTTGGATTTC
1 TGAATTTGGAGTTGGATTTC
123173716 TGAATTTGGAGTTGGATTTC
1 TGAATTTGGAGTTGGATTTC
123173736 T
1 T
123173737 ATTTAAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.05, G:0.29, T:0.46
Consensus pattern (20 bp):
TGAATTTGGAGTTGGATTTC
Found at i:123175118 original size:9 final size:9
Alignment explanation
Indices: 123175104--123175148 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
123175094 ATTTCACAAT
123175104 TCGAATAAC
1 TCGAATAAC
*
123175113 TCGAATAAT
1 TCGAATAAC
*
123175122 TCAAATAAC
1 TCGAATAAC
*
123175131 TCGAATAAT
1 TCGAATAAC
*
123175140 TCAAATAAC
1 TCGAATAAC
123175149 AGATTGGTAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.49, C:0.18, G:0.07, T:0.27
Consensus pattern (9 bp):
TCGAATAAC
Found at i:123175128 original size:18 final size:18
Alignment explanation
Indices: 123175101--123175148 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
123175091 TGAATTTCAC
*
123175101 AATTCGAATAACTCGAAT
1 AATTCAAATAACTCGAAT
123175119 AATTCAAATAACTCGAAT
1 AATTCAAATAACTCGAAT
123175137 AATTCAAATAAC
1 AATTCAAATAAC
123175149 AGATTGGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.27
Consensus pattern (18 bp):
AATTCAAATAACTCGAAT
Found at i:123175284 original size:20 final size:20
Alignment explanation
Indices: 123175239--123175285 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
123175229 AATAAAAAAA
*
123175239 TAAAAAAATTCAAAATATTT
1 TAAAAAAATTCAAAAGATTT
* *
123175259 TTAAAAAATTATAAAAGA-TT
1 TAAAAAAATT-CAAAAGATTT
123175279 TAAAAAA
1 TAAAAAA
123175286 TTTCTAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
TAAAAAAATTCAAAAGATTT
Found at i:123175297 original size:2 final size:2
Alignment explanation
Indices: 123175292--123175322 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
123175282 AAAATTTCTA
123175292 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
123175323 AAGTTCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:123177777 original size:44 final size:45
Alignment explanation
Indices: 123177724--123177824 Score: 132
Period size: 44 Copynumber: 2.2 Consensus size: 45
123177714 TGTCTTTGAC
* * *
123177724 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
123177768 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
123177814 ATGGACTTACA
1 ATGGACTTACA
123177825 GGGCTCATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
44 33 0.67
46 16 0.33
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:123177830 original size:46 final size:44
Alignment explanation
Indices: 123177743--123177831 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
123177733 CATGAATTAT
* *
123177743 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACAGGGCTCAA
*
123177787 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACAGGGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACAGGGCTCA
123177832 TTTCGTTCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
46 22 0.55
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACAGGGCTCAA
Found at i:123180093 original size:30 final size:29
Alignment explanation
Indices: 123180034--123180093 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
123180024 CATGATTAAA
* *
123180034 TTAGTCCCTCTACTATTAAATATATCAAT
1 TTAGTCCCTCTACTATTAAAAAAATCAAT
123180063 TTAGTCCC-CATACTATTAAAAAGAATCAAT
1 TTAGTCCCTC-TACTATTAAAAA-AATCAAT
123180093 T
1 T
123180094 AAAGCCTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 1 0.04
29 19 0.70
30 7 0.26
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (29 bp):
TTAGTCCCTCTACTATTAAAAAAATCAAT
Found at i:123180631 original size:6 final size:6
Alignment explanation
Indices: 123180620--123180645 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
123180610 TTTTTACATA
123180620 TTGGAT TTGGAT TTGGAT TTGGAT TT
1 TTGGAT TTGGAT TTGGAT TTGGAT TT
123180646 AAATTCAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (6 bp):
TTGGAT
Found at i:123182115 original size:10 final size:10
Alignment explanation
Indices: 123182097--123182177 Score: 62
Period size: 10 Copynumber: 8.1 Consensus size: 10
123182087 ATTTATATTT
123182097 TAAAAAATTA
1 TAAAAAATTA
* *
123182107 TACAAAATTT
1 TAAAAAATTA
*
123182117 TAAAAAATTC
1 TAAAAAATTA
123182127 TAAAAAATATA
1 TAAAAAAT-TA
123182138 TAAAAAAGTT-
1 TAAAAAA-TTA
123182148 T--AAAA-TA
1 TAAAAAATTA
*
123182155 TAAAAAATTTC
1 TAAAAAA-TTA
123182166 TAAAATAATTA
1 TAAAA-AATTA
123182177 T
1 T
123182178 TATGGGACCT
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
6 1 0.02
7 1 0.02
8 4 0.07
9 4 0.07
10 25 0.45
11 18 0.32
12 3 0.05
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:123182118 original size:20 final size:20
Alignment explanation
Indices: 123182097--123182177 Score: 69
Period size: 20 Copynumber: 4.0 Consensus size: 20
123182087 ATTTATATTT
* * *
123182097 TAAAAAATTATACAAAATTT
1 TAAAAAATTTTAAAAAATTA
*
123182117 TAAAAAATTCTAAAAAATATA
1 TAAAAAATTTTAAAAAAT-TA
*
123182138 TAAAAAAGTTT--AAAA-TA
1 TAAAAAATTTTAAAAAATTA
123182155 TAAAAAATTTCTAAAATAATTA
1 TAAAAAATTT-TAAAA-AATTA
123182177 T
1 T
123182178 TATGGGACCT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
17 11 0.22
18 1 0.02
19 4 0.08
20 18 0.37
21 12 0.24
22 3 0.06
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (20 bp):
TAAAAAATTTTAAAAAATTA
Found at i:123182157 original size:17 final size:18
Alignment explanation
Indices: 123182135--123182172 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
123182125 TCTAAAAAAT
123182135 ATATAAAAAAGTT-TAAA
1 ATATAAAAAAGTTCTAAA
*
123182152 ATATAAAAAATTTCTAAA
1 ATATAAAAAAGTTCTAAA
123182170 ATA
1 ATA
123182173 ATTATTATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (18 bp):
ATATAAAAAAGTTCTAAA
Found at i:123186869 original size:15 final size:15
Alignment explanation
Indices: 123186847--123186887 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
123186837 TATTCCCATG
*
123186847 TATA-TATTATTACA
1 TATATTATTAGTACA
*
123186861 TTTATTATTAGTACA
1 TATATTATTAGTACA
123186876 TATATT-TTAGTA
1 TATATTATTAGTA
123186888 TGCGTATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (15 bp):
TATATTATTAGTACA
Found at i:123187109 original size:2 final size:2
Alignment explanation
Indices: 123187102--123187140 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
123187092 ATATGTTATG
123187102 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
123187141 TATGTACCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:123191152 original size:13 final size:13
Alignment explanation
Indices: 123191136--123191169 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
123191126 TAAATTATAA
*
123191136 ATTATTATTAACT
1 ATTATTATTAAAT
123191149 ATTATTATTAAAT
1 ATTATTATTAAAT
*
123191162 AATATTAT
1 ATTATTAT
123191170 ATATATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:123191221 original size:17 final size:17
Alignment explanation
Indices: 123191199--123191233 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
123191189 AAATGAAGAA
*
123191199 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
123191216 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
123191233 A
1 A
123191234 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:123192857 original size:39 final size:39
Alignment explanation
Indices: 123192750--123192884 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
123192740 GACCTCGAGT
* * * *
123192750 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
123192791 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
123192829 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
123192868 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
123192885 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:123194697 original size:39 final size:39
Alignment explanation
Indices: 123194654--123194788 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
123194644 ACCAATATGG
*
123194654 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
123194693 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
123194731 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
123194772 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
123194789 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:123196328 original size:17 final size:17
Alignment explanation
Indices: 123196306--123196340 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
123196296 GAATGCTCTC
*
123196306 TGTTTCTTATTCTTCTT
1 TGTTTCTTATTATTCTT
*
123196323 TGTTTCTTTTTATTCTT
1 TGTTTCTTATTATTCTT
123196340 T
1 T
123196341 TTCTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCTTATTATTCTT
Found at i:123196410 original size:13 final size:13
Alignment explanation
Indices: 123196370--123196403 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
123196360 ACATATATAT
* *
123196370 ATAATATTATTTA
1 ATAATAATAGTTA
123196383 ATAATAATAGTTA
1 ATAATAATAGTTA
123196396 ATAATAAT
1 ATAATAAT
123196404 TTATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATAATAATAGTTA
Found at i:123197858 original size:14 final size:14
Alignment explanation
Indices: 123197839--123197867 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
123197829 GATGACATGA
123197839 CACAATCTTAAAGT
1 CACAATCTTAAAGT
123197853 CACAATCTTAAAGT
1 CACAATCTTAAAGT
123197867 C
1 C
123197868 GTACATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (14 bp):
CACAATCTTAAAGT
Found at i:123204665 original size:35 final size:35
Alignment explanation
Indices: 123204624--123204734 Score: 118
Period size: 35 Copynumber: 3.2 Consensus size: 35
123204614 TAAGTATGTA
* *
123204624 CATGTGAGGTCATATTGAGTTTGTATATTCGGCTG
1 CATGTGAGGTTATATTGAATTTGTATATTCGGCTG
* * * *** *
123204659 CTTGTGAAGTTATATTGAACTTGTATATTCAATTT
1 CATGTGAGGTTATATTGAATTTGTATATTCGGCTG
*
123204694 CATATGAGGTTATATTGAATTTGTATATTCGGC--
1 CATGTGAGGTTATATTGAATTTGTATATTCGGCTG
123204727 CATGTGAG
1 CATGTGAG
123204735 ATATTTTATT
Statistics
Matches: 59, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
33 7 0.12
35 52 0.88
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (35 bp):
CATGTGAGGTTATATTGAATTTGTATATTCGGCTG
Found at i:123210467 original size:20 final size:22
Alignment explanation
Indices: 123210442--123210483 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
123210432 ATGCAAAAAA
*
123210442 AAATAAAACT-AT-TAAATATT
1 AAATAAAAATAATATAAATATT
123210462 AAATAAAAATAATATAAATATT
1 AAATAAAAATAATATAAATATT
123210484 TTTCAAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATAAAAATAATATAAATATT
Found at i:123214873 original size:2 final size:2
Alignment explanation
Indices: 123214868--123214896 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
123214858 TTTTATCAAT
123214868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
123214897 TAAAAGCTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:123214930 original size:15 final size:15
Alignment explanation
Indices: 123214899--123214927 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
123214889 ATATATATTA
123214899 AAAGCTACTATTTTT
1 AAAGCTACTATTTTT
123214914 AAAGCTA-TATTTTT
1 AAAGCTACTATTTTT
123214928 TAACCACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.48
Consensus pattern (15 bp):
AAAGCTACTATTTTT
Found at i:123216588 original size:29 final size:32
Alignment explanation
Indices: 123216537--123216598 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 32
123216527 AGCATATATC
123216537 TTTATAATTTTTAAAAGATCAAA-T-CAATTT
1 TTTATAATTTTTAAAAGATCAAAGTGCAATTT
* * *
123216567 TTTATTATTTTT-AGAGGTCAAAGTGCAATTT
1 TTTATAATTTTTAAAAGATCAAAGTGCAATTT
123216598 T
1 T
123216599 ATCACTACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.30
30 12 0.44
31 7 0.26
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (32 bp):
TTTATAATTTTTAAAAGATCAAAGTGCAATTT
Found at i:123225046 original size:14 final size:14
Alignment explanation
Indices: 123225027--123225054 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
123225017 GCAGTCATGC
123225027 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
123225041 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
123225055 TTTGCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (14 bp):
CTTGAAGACTCCAT
Found at i:123230026 original size:48 final size:48
Alignment explanation
Indices: 123229969--123230072 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
123229959 TCGGATGGGT
* *
123229969 GAACGAGATCTACGGTGCACAGGTGTAGGTGACCTGCGCCGATAAGGA
1 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
123230017 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
1 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
123230065 GAACGAGA
1 GAACGAGA
123230073 CTGAGATCTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.29, C:0.22, G:0.36, T:0.13
Consensus pattern (48 bp):
GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
Found at i:123234570 original size:30 final size:29
Alignment explanation
Indices: 123234499--123234573 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
123234489 ATACTCTTCA
**
123234499 TAAA-TTTAAAATTTAGTCCCTGTATTTT
1 TAAATTTTAAAATTTAGTCCCTCCATTTT
* *
123234527 T-ATTTTTAGAAATTTAGTCTCTCCACTTTT
1 TAAATTTTA-AAATTTAGTCCCTCCA-TTTT
123234557 TAAATTTTAAAATTTAG
1 TAAATTTTAAAATTTAG
123234574 GTTCAACAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 5 0.13
29 13 0.34
30 13 0.34
31 6 0.16
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.51
Consensus pattern (29 bp):
TAAATTTTAAAATTTAGTCCCTCCATTTT
Found at i:123239172 original size:24 final size:24
Alignment explanation
Indices: 123239143--123239189 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
123239133 ATTTTGATGC
123239143 TTGACTTTATAGGTTTTGACCTTT
1 TTGACTTTATAGGTTTTGACCTTT
123239167 TTGACTTTATAGGTTTTGACCTT
1 TTGACTTTATAGGTTTTGACCTT
123239190 CAATGCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.53
Consensus pattern (24 bp):
TTGACTTTATAGGTTTTGACCTTT
Found at i:123239367 original size:232 final size:231
Alignment explanation
Indices: 123238954--123239372 Score: 583
Period size: 232 Copynumber: 1.8 Consensus size: 231
123238944 TACTTCTTGG
* * * **
123238954 CCTTCATTGCTAGTTAGTGGTGTTACCGGGACTTGGGTGTGAGCTTTGGATAGCCTATATCTCTG
1 CCTTCAATGCTAGTTAGTGGTGTTACCGGGACTTGGGTGTGAGCTTTGCATAGCCTACATCTCCA
* * * * *
123239019 ATGTACATTAGATATGGGTGCAGATATGAGTACTTCAAGAAAAATAGGAGTTCAAGCAGTATAGC
66 ATATACATTAGATATGGGTGCAGATAAGAGTACGTAAAGAAAAATAGGAGTTCAAGCAATATAGC
* * * *
123239084 TAGTCAGTGATTTCTAAGCTATGAGAAAGTACTGAAAACCACATTGTGCATTTTGATGCTTGACT
131 TAGTCAGTAATTTCGAAGCTATGAGAAACTAATG-AAACCACATTGTGCATTTTGATGCTTGACT
123239149 TTATAGGTTTTGACCTTTTTGACTTTATAGGTTTTGA
195 TTATAGGTTTTGACCTTTTTGACTTTATAGGTTTTGA
*
123239186 CCTTCAATGCTAGTTAGCT-GTGTTACCGGGACTTGGGTGTGAG-TGTTGCATAGCCTACATGTC
1 CCTTCAATGCTAGTTAG-TGGTGTTACCGGGACTTGGGTGTGAGCT-TTGCATAGCCTACATCTC
* * * **
123239249 CAATATGCATTAGATATGGGTGTTAGATAAGGGTACGTAAAGAAAAATGAGGAGTTTGAGCAATA
64 CAATATACATTAGATATGGGTG-CAGATAAGAGTACGTAAAGAAAAAT-AGGAGTTCAAGCAATA
*
123239314 TAGCTAGTCGGTAATTTCGAAGCTATGAGAAACTAATG-AACCACATTGTGCATTTTGAT
127 TAGCTAGTCAGTAATTTCGAAGCTATGAGAAACTAATGAAACCACATTGTGCATTTTGAT
123239373 ATTTGAATCT
Statistics
Matches: 162, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
231 1 0.01
232 94 0.58
233 21 0.13
234 46 0.28
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (231 bp):
CCTTCAATGCTAGTTAGTGGTGTTACCGGGACTTGGGTGTGAGCTTTGCATAGCCTACATCTCCA
ATATACATTAGATATGGGTGCAGATAAGAGTACGTAAAGAAAAATAGGAGTTCAAGCAATATAGC
TAGTCAGTAATTTCGAAGCTATGAGAAACTAATGAAACCACATTGTGCATTTTGATGCTTGACTT
TATAGGTTTTGACCTTTTTGACTTTATAGGTTTTGA
Found at i:123239753 original size:197 final size:197
Alignment explanation
Indices: 123239273--123239775 Score: 563
Period size: 197 Copynumber: 2.6 Consensus size: 197
123239263 TATGGGTGTT
* * ** * *
123239273 AGATAAGGGTACGTAAAGAAAAATGAGGAGT-TTGAGCAATATAGCTAGTCGGTAATTTCGAAGC
1 AGATATGGGTACTTAAAGAAAAATGAGGAGTGTCCA-AAATATAGCTAGTCGGTAATTTCTAAGC
* *
123239337 TATGAGAAACTAATG--AACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGTCTTTA
65 TATGAGAAACTAATGAAAACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGCCTTCA
* * * *
123239400 GTGCTAGTTAACTGTGTTACCGGGACTTGGGTGTTAGCATTGGATAGCCTATATGTCTAATATGC
130 GTGCTAGTTAACTATGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCCATATGTCCAATATGC
123239465 ATC
195 ATC
* * * *
123239468 AGATATGGGTACTTAAAGAAAAATGAGGAGTTTGCACAATATAGCTAGTCGGTAATCTCTAAGCT
1 AGATATGGGTACTTAAAGAAAAATGAGGAGTGTCCAAAATATAGCTAGTCGGTAATTTCTAAGCT
* * * *
123239533 ATGAAAAACTAATGAAGAACCACATTGTGCATTTTGGTATTTGAATTTATAGTTTT-TGACCTTC
66 ATGAGAAACTAATGAA-AACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAG-CCTTC
* * * *
123239597 ATTGCTA-TTTAGTCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTCCAATAT
129 AGTGCTAGTTAACT-ATGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCCATATGTCCAATAT
*
123239660 GCATT
193 GCATC
* ** * * *
123239665 AGATGTTTGTACTTCAAGAAAAATGA-G-GTGTCCAAATATAATAGCAAGTTGGTAATTTCTAAG
1 AGATATGGGTACTTAAAGAAAAATGAGGAGTGTCCAAA-AT-ATAGCTAGTCGGTAATTTCTAAG
* * * * *
123239728 CTATGGGAAATTAATGAATAACCACATTTTGCATTCTGCTATTTGAAT
64 CTATGAGAAACTAATGAA-AACCACATTGTGCATTTTGATATTTGAAT
123239776 GACATTCAAT
Statistics
Matches: 262, Mismatches: 38, Indels: 14
0.83 0.12 0.04
Matches are distributed among these distances:
195 75 0.29
196 5 0.02
197 115 0.44
198 67 0.26
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (197 bp):
AGATATGGGTACTTAAAGAAAAATGAGGAGTGTCCAAAATATAGCTAGTCGGTAATTTCTAAGCT
ATGAGAAACTAATGAAAACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGCCTTCAG
TGCTAGTTAACTATGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCCATATGTCCAATATGCA
TC
Found at i:123241653 original size:12 final size:12
Alignment explanation
Indices: 123241636--123241661 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
123241626 AATGGGCCTT
123241636 AATATATTCAAA
1 AATATATTCAAA
123241648 AATATATTCAAA
1 AATATATTCAAA
123241660 AA
1 AA
123241662 GGGACATGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (12 bp):
AATATATTCAAA
Found at i:123254613 original size:19 final size:20
Alignment explanation
Indices: 123254581--123254620 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
123254571 TCGGTTGACC
123254581 TGCGAATGGGTATGAACCGG
1 TGCGAATGGGTATGAACCGG
123254601 TGCGAAT-GGTATGAACCGG
1 TGCGAATGGGTATGAACCGG
123254620 T
1 T
123254621 TGTGCCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.25, C:0.15, G:0.38, T:0.23
Consensus pattern (20 bp):
TGCGAATGGGTATGAACCGG
Found at i:123255415 original size:16 final size:16
Alignment explanation
Indices: 123255394--123255444 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
123255384 CTTTTTTATT
123255394 TTTATATATTATACAA
1 TTTATATATTATACAA
*
123255410 TTTATAT-TATATAAAAA
1 TTTATATAT-TAT-ACAA
*
123255427 TTAACTATATTATACAA
1 TTTA-TATATTATACAA
123255444 T
1 T
123255445 AATATGAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
15 1 0.04
16 10 0.36
17 10 0.36
18 6 0.21
19 1 0.04
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTATATATTATACAA
Found at i:123257527 original size:2 final size:2
Alignment explanation
Indices: 123257520--123257547 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
123257510 CATATGTGTT
123257520 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
123257548 ATGATTCAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:123257758 original size:15 final size:15
Alignment explanation
Indices: 123257738--123257769 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
123257728 ATCTTGCCAT
*
123257738 ATATATATACATATA
1 ATATATACACATATA
123257753 ATATATACACATATA
1 ATATATACACATATA
123257768 AT
1 AT
123257770 TGTTTTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATATACACATATA
Found at i:123261313 original size:2 final size:2
Alignment explanation
Indices: 123261300--123261337 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
123261290 AACAATGCAA
* *
123261300 AT AT AT AC AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123261338 GCATGTACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:123263914 original size:31 final size:31
Alignment explanation
Indices: 123263863--123263921 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
123263853 ATTGAGAAAA
* * *
123263863 GAAACTTTGATTGTGGTTCAAATATACACAT
1 GAAAATTTCATTGTGATTCAAATATACACAT
*
123263894 GAAAATTTCATTGTGATTCAACTATACA
1 GAAAATTTCATTGTGATTCAAATATACA
123263922 GATTTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (31 bp):
GAAAATTTCATTGTGATTCAAATATACACAT
Found at i:123264789 original size:2 final size:2
Alignment explanation
Indices: 123264782--123264816 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
123264772 CTTCATAATC
123264782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
123264817 AAAACATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:123265843 original size:10 final size:9
Alignment explanation
Indices: 123265802--123265862 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
123265792 CTTTAGATAA
123265802 TTTTTAA-T
1 TTTTTAATT
123265810 TTTTTAATT
1 TTTTTAATT
123265819 TTCTTTATATAT
1 TT-TTTA-AT-T
123265831 TTTTTAGATT
1 TTTTTA-ATT
*
123265841 TTTTTAAAT
1 TTTTTAATT
**
123265850 TTTAGAATT
1 TTTTTAATT
123265859 TTTT
1 TTTT
123265863 AAAAAATAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
8 7 0.16
9 14 0.33
10 11 0.26
11 8 0.19
12 3 0.07
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (9 bp):
TTTTTAATT
Found at i:123265854 original size:17 final size:17
Alignment explanation
Indices: 123265832--123265865 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
123265822 TTTATATATT
*
123265832 TTTTAGATTTTTTTAAA
1 TTTTAGAATTTTTTAAA
123265849 TTTTAGAATTTTTTAAA
1 TTTTAGAATTTTTTAAA
123265866 AAATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TTTTAGAATTTTTTAAA
Found at i:123265904 original size:19 final size:19
Alignment explanation
Indices: 123265868--123265923 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
123265858 TTTTTAAAAA
*
123265868 ATAAAAATTTTAGAATTTTT
1 ATAAATATTTT-GAATTTTT
123265888 ATAAATATTTTGAA-TTTT
1 ATAAATATTTTGAATTTTT
*
123265906 AAAAATTATTTTGAATTT
1 ATAAA-TATTTTGAATTT
123265924 ATTTTTTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.25
19 12 0.38
20 12 0.38
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
ATAAATATTTTGAATTTTT
Found at i:123269288 original size:25 final size:25
Alignment explanation
Indices: 123269260--123269315 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
123269250 AACCATAGTG
123269260 AAAAGTAAACTAATTCCATTACTAT
1 AAAAGTAAACTAATTCCATTACTAT
123269285 AAAAGTAAACTAATTCCATTACTAT
1 AAAAGTAAACTAATTCCATTACTAT
123269310 AAAAGT
1 AAAAGT
123269316 GATTTTGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.30
Consensus pattern (25 bp):
AAAAGTAAACTAATTCCATTACTAT
Found at i:123272155 original size:2 final size:2
Alignment explanation
Indices: 123272148--123272178 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
123272138 AAACAGAGTA
123272148 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
123272179 TAATACGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:123275719 original size:47 final size:47
Alignment explanation
Indices: 123275655--123275765 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
123275645 GACATTGAGT
*
123275655 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
123275702 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
123275749 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
123275766 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:123282974 original size:47 final size:47
Alignment explanation
Indices: 123282910--123283020 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
123282900 GACATTGAGT
*
123282910 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
123282957 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
123283004 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
123283021 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:123284479 original size:60 final size:61
Alignment explanation
Indices: 123284392--123284506 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 61
123284382 ACTTTTTCTT
* * **
123284392 AATTTAGTACCTAAACTTGACACTTTTTCTTAAGTTGGTACTTAAT-CTTTTTTGGGGTCC
1 AATTTAGTACCTAAACTTAACACTTTTTCCTAAGTTGGTACCAAATCCTTTTTTGGGGTCC
*** *
123284452 AATTTAGTACCTAAACTTAATTTTTTTTCCTAATTTGGTACCAAATCCTTTTTTG
1 AATTTAGTACCTAAACTTAACACTTTTTCCTAAGTTGGTACCAAATCCTTTTTTG
123284507 TTTGATTTGG
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
60 38 0.83
61 8 0.17
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (61 bp):
AATTTAGTACCTAAACTTAACACTTTTTCCTAAGTTGGTACCAAATCCTTTTTTGGGGTCC
Found at i:123285020 original size:60 final size:59
Alignment explanation
Indices: 123284911--123285029 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 59
123284901 CAAATTAGGA
* * * * *
123284911 ATACCAAATTGGGCCCAAAAAAGTTTAGGTATCAAGTTAGAAAGAAGTGTCAAGTTCAG
1 ATACCAAATTGAGCCAAAAAAAGTTTAAGTACCAAGTTAGAAAAAAGTGTCAAGTTCAG
*
123284970 ATACCAAATTGAGCCAAAAAAAAGTTTAAGTACCAAATTTA-AAAAAAGTGTCAAGTTCAG
1 ATACCAAATTGAGCC-AAAAAAAGTTTAAGTACC-AAGTTAGAAAAAAGTGTCAAGTTCAG
123285030 GAATCAAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
59 14 0.27
60 33 0.63
61 5 0.10
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (59 bp):
ATACCAAATTGAGCCAAAAAAAGTTTAAGTACCAAGTTAGAAAAAAGTGTCAAGTTCAG
Found at i:123298997 original size:19 final size:18
Alignment explanation
Indices: 123298953--123298998 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
123298943 TTATTTTTGG
*
123298953 ATTTAATTATAAAATATTA
1 ATTTAA-TATAAAATATAA
123298972 ATATTAATATAAAATTATAA
1 AT-TTAATATAAAA-TATAA
123298992 ATTTAAT
1 ATTTAAT
123298999 TGTTTTGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTAATATAAAATATAA
Found at i:123303777 original size:205 final size:205
Alignment explanation
Indices: 123303425--123304233 Score: 986
Period size: 205 Copynumber: 3.9 Consensus size: 205
123303415 TCATAGGTTC
* * ** *
123303425 CTATAACTCTCTAAAGTAAAATACTGGTCACCGGACAATGAAACATTCTCTCGAGTCAAATCCAA
1 CTATAACTCTCTAAAGCAAAATACTAGTCACCGGACAACAAAACATTCTCTAGAGTCAAATCCAA
* * ** * *
123303490 TCTTATGGACCAACTTGTACTAAGACATTCATTCACCAGACTTTCGCAATACATCTCGTTTCCAC
66 TTTTATGGACCAACTTCTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTTCCAT
* * * **
123303555 GACAGAACGAAGATGAAAGCTCATACATGTGTTTATGCAAA-CTGAGTTTTAGCTTCTCAAGGTG
131 GATAGAACAAAGATGAAAGCTCAT-CATGTGTTTATGCAAACCCGAGTTTTAGCTTCTCAATATG
*
123303619 CAGCGATGTTT
195 CAGCAATGTTT
* ** * *
123303630 CTATAACTCTCTAAAGCAAGATACTAGTTGCCGGACTACAAAACATTCTCAAGAGTCAAATCCAA
1 CTATAACTCTCTAAAGCAAAATACTAGTCACCGGACAACAAAACATTCTCTAGAGTCAAATCCAA
* * * *
123303695 TTTTATGGACCAGCTTCAACCGAGACATTCATATC-CCGGACTTTCGCAATGCATCTCGTTTCCG
66 TTTTATGGACCAACTTCTACCGAGACATTCAT-TCACCAGACTTTCGCAATGCATCTCGTTTCCA
* * *
123303759 TGATAGAACAAAGATGAAAGCTCGTACATGTGTTTATG-AAAACCAAGTTTTAGCTTCTCAATAT
130 TGATAGAACAAAGATGAAAGCTCAT-CATGTGTTTATGCAAACCCGAGTTTTAGCTTCTCAATAT
123303823 GCAGCAATGTTT
194 GCAGCAATGTTT
* * * *
123303835 CTATAACTCTCTAAAGGAAAATACTAGTCGCCGGACAACAAAACATTCTCTTA-AGTC-AATTCG
1 CTATAACTCTCTAAAGCAAAATACTAGTCACCGGACAACAAAACATTCTC-TAGAGTCAAATCCA
* * * *
123303898 ATTTTATGGACCAACTTCGACCGAGACATTCATTCACTATACTTTCGCAATGCATCTTGTTTCCA
65 ATTTTATGGACCAACTTCTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTTCCA
* *
123303963 TGATAGAACAGAGATGAAAGCT-AGGTCTTGTGTTTATGCAAACCCGAGTTTTAGCTTCTCAATA
130 TGATAGAACAAAGATGAAAGCTCA--TCATGTGTTTATGCAAACCCGAGTTTTAGCTTCTCAATA
123304027 TGCAGCAATGTTT
193 TGCAGCAATGTTT
* * * *
123304040 CTACAACTCTCTAAAGCAAAATACTAGTCACCGGACAACAAAACTTTCTCTCGAGTCAAATCCGA
1 CTATAACTCTCTAAAGCAAAATACTAGTCACCGGACAACAAAACATTCTCTAGAGTCAAATCCAA
* * * ** *
123304105 TTTTATGGAGCAACTTGTACCGAGACATTCATTGACTGGACTTTCGCAATGCATCTCGTAT-CA-
66 TTTTATGGACCAACTTCTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTTCCAT
** * * * *
123304168 GAAATAGAACGGAGATGAAAGCTCGGTCGTGTGTCTACGCAAACCCGAGTTTTAGCTTCTCAATA
131 G--ATAGAACAAAGATGAAAGCTC-ATCATGTGTTTATGCAAACCCGAGTTTTAGCTTCTCAATA
123304233 T
193 T
123304234 ACGGCCAGGA
Statistics
Matches: 525, Mismatches: 66, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
203 2 0.00
204 96 0.18
205 309 0.59
206 118 0.22
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (205 bp):
CTATAACTCTCTAAAGCAAAATACTAGTCACCGGACAACAAAACATTCTCTAGAGTCAAATCCAA
TTTTATGGACCAACTTCTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTTCCAT
GATAGAACAAAGATGAAAGCTCATCATGTGTTTATGCAAACCCGAGTTTTAGCTTCTCAATATGC
AGCAATGTTT
Found at i:123305798 original size:17 final size:16
Alignment explanation
Indices: 123305747--123305798 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 16
123305737 AAATGGGATT
*
123305747 TTAAATATAATAAAAAA
1 TTAAAT-TATTAAAAAA
*
123305764 TATAAATTTATTTAAAAAG
1 T-TAAA-TTA-TTAAAAAA
123305783 TTAAATTATTAAAAAA
1 TTAAATTATTAAAAAA
123305799 ATCTAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 7 0.24
17 4 0.14
18 10 0.34
19 8 0.28
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
TTAAATTATTAAAAAA
Found at i:123305805 original size:18 final size:17
Alignment explanation
Indices: 123305758--123305806 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
123305748 TAAATATAAT
*
123305758 AAAAAATATAAATTTATTT
1 AAAAAAT-TAAA-TTATTA
*
123305777 AAAAAGTTAAATTATTA
1 AAAAAATTAAATTATTA
123305794 AAAAAATCTAAAT
1 AAAAAAT-TAAAT
123305807 AAATACTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 11 0.42
18 9 0.35
19 6 0.23
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAAAATTAAATTATTA
Found at i:123306128 original size:28 final size:28
Alignment explanation
Indices: 123306096--123306178 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 28
123306086 GTCACGATTA
* *
123306096 TAAACTTGAATTAAAATTGAAATATATC
1 TAAACTTAAATTAAAATTAAAATATATC
123306124 TAAACTTAAATCAAAATAAAATTAAAATATATC
1 TAAACTTAAAT-----TAAAATTAAAATATATC
*
123306157 TAAACTTAAATCAAAA-TAAAAT
1 TAAACTTAAATTAAAATTAAAAT
123306179 TATAAAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
27 6 0.13
28 14 0.30
33 27 0.57
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.31
Consensus pattern (28 bp):
TAAACTTAAATTAAAATTAAAATATATC
Found at i:123306152 original size:33 final size:33
Alignment explanation
Indices: 123306107--123306180 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
123306097 AAACTTGAAT
*
123306107 TAAAATTGAAATATATCTAAACTTAAATCAAAA
1 TAAAATTAAAATATATCTAAACTTAAATCAAAA
123306140 TAAAATTAAAATATATCTAAACTTAAATCAAAA
1 TAAAATTAAAATATATCTAAACTTAAATCAAAA
123306173 TAAAATTA
1 TAAAATTA
123306181 TAAAAAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.59, C:0.08, G:0.01, T:0.31
Consensus pattern (33 bp):
TAAAATTAAAATATATCTAAACTTAAATCAAAA
Found at i:123306160 original size:17 final size:17
Alignment explanation
Indices: 123306107--123306166 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
123306097 AAACTTGAAT
*
123306107 TAAAATTGAAATATATC
1 TAAAATTAAAATATATC
* **
123306124 TAAACTT-AAATCA-AAA
1 TAAAATTAAAAT-ATATC
123306140 TAAAATTAAAATATATC
1 TAAAATTAAAATATATC
*
123306157 TAAACTTAAA
1 TAAAATTAAA
123306167 TCAAAATAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 12 0.36
17 21 0.64
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (17 bp):
TAAAATTAAAATATATC
Found at i:123310669 original size:17 final size:17
Alignment explanation
Indices: 123310647--123310681 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
123310637 TTATTATTGA
123310647 CCCATAAAAAATATCAT
1 CCCATAAAAAATATCAT
123310664 CCCATAAAAAATATCAT
1 CCCATAAAAAATATCAT
123310681 C
1 C
123310682 AAGGGACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (17 bp):
CCCATAAAAAATATCAT
Found at i:123310992 original size:19 final size:20
Alignment explanation
Indices: 123310965--123311002 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
123310955 TATTTTCACA
*
123310965 TTATCTTTTTAAA-ATTGAC
1 TTATATTTTTAAATATTGAC
123310984 TTATATTTTTAAATATTGA
1 TTATATTTTTAAATATTGA
123311003 AAAAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (20 bp):
TTATATTTTTAAATATTGAC
Found at i:123311133 original size:32 final size:31
Alignment explanation
Indices: 123311072--123311159 Score: 117
Period size: 32 Copynumber: 2.8 Consensus size: 31
123311062 TCAAGGCACC
123311072 TAGTTGGATTTTATTTT--TTTTTATCTATT
1 TAGTTGGATTTTATTTTACTTTTTATCTATT
*
123311101 TAGTTGGATTTTATTTTACCTTTTTATTTATT
1 TAGTTGGATTTTATTTTA-CTTTTTATCTATT
*
123311133 TAGTTGAATTTTATTTTATTCTTTTTA
1 TAGTTGGATTTTATTTTA--CTTTTTA
123311160 CGATAAATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 17 0.33
32 28 0.54
33 7 0.13
ACGTcount: A:0.19, C:0.05, G:0.09, T:0.67
Consensus pattern (31 bp):
TAGTTGGATTTTATTTTACTTTTTATCTATT
Found at i:123311331 original size:18 final size:18
Alignment explanation
Indices: 123311284--123311334 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
123311274 GGTCCGACAT
* *
123311284 CAGCTCCAACGACGGCCA
1 CAGCTCCATCGGCGGCCA
123311302 CAGCTCCATCGGCGGCCA
1 CAGCTCCATCGGCGGCCA
* *
123311320 CGGCTCCGTCGGCGG
1 CAGCTCCATCGGCGG
123311335 GAAAGGCGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.43, G:0.31, T:0.10
Consensus pattern (18 bp):
CAGCTCCATCGGCGGCCA
Found at i:123314748 original size:7 final size:7
Alignment explanation
Indices: 123314736--123314762 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
123314726 ATCAATTTTG
123314736 ACCCAAA
1 ACCCAAA
123314743 ACCCAAA
1 ACCCAAA
123314750 ACCCAAA
1 ACCCAAA
123314757 ACCCAA
1 ACCCAA
123314763 TCCTAATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (7 bp):
ACCCAAA
Found at i:123322390 original size:5 final size:5
Alignment explanation
Indices: 123322373--123322405 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
123322363 TTGTTTTTTT
123322373 TTAAA -TAAA -TAAA TTAAA TTAAA TTAAA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
123322406 CGACATTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
TTAAA
Found at i:123325202 original size:151 final size:153
Alignment explanation
Indices: 123325012--123325294 Score: 412
Period size: 151 Copynumber: 1.9 Consensus size: 153
123325002 GTTTTCATCC
* * ** * *
123325012 ATTGTCATTTTTGTTTCTTATATATTCTCAGGCACCAAACAGTAGATAAAGGAT-AGATTAAACT
1 ATTGTCATTCTTGTTTCATATATATTCTCAGAAACCAAACAATAGATAAACGATCA-ATTAAACT
** * *
123325076 GAGAGTGAATACATACAATTCCT-ACAAGATTATCACAATGCTAAGCAAAATCAGAT-CGAAAAT
65 GAGAGACAATACATACAATT-CTAACAAAAGTATCACAATGCTAAGCAAAATCAGATACGAAAAT
123325139 CATCAATTCATACTGTATTTAATCT
129 CATCAATTCATACTGTATTTAATCT
*
123325164 ATTGTC-TTCTTGTTTCATATATATTCTCAGAAACCAAACAATAGGTAAACGATCAATTAAACTG
1 ATTGTCATTCTTGTTTCATATATATTCTCAGAAACCAAACAATAGATAAACGATCAATTAAACTG
*
123325228 AGAGACAATACATACAATTCTAACAAAAGTATCACAATGCTAAGCAAAATCAGATACGAAGATCA
66 AGAGACAATACATACAATTCTAACAAAAGTATCACAATGCTAAGCAAAATCAGATACGAAAATCA
123325293 TC
131 TC
123325295 GAACTATGAT
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
150 2 0.02
151 97 0.84
152 17 0.15
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (153 bp):
ATTGTCATTCTTGTTTCATATATATTCTCAGAAACCAAACAATAGATAAACGATCAATTAAACTG
AGAGACAATACATACAATTCTAACAAAAGTATCACAATGCTAAGCAAAATCAGATACGAAAATCA
TCAATTCATACTGTATTTAATCT
Found at i:123325680 original size:176 final size:174
Alignment explanation
Indices: 123325160--123325729 Score: 650
Period size: 176 Copynumber: 3.2 Consensus size: 174
123325150 ACTGTATTTA
* * * * *
123325160 ATCTATTGTCTTCTTGTTTCATATATATTCTCAGAAACCAAACAATAGGTAAACGATCAATTAAA
1 ATCTATAGTCTTCTT-TTTC-CATATATTCTCAGGAACCAAACAGTAGATAAACGATCAATTAAA
* *
123325225 CTGAGAGAC-AATACATACAATT-CTAACAAAAGTATCACAATGCTAAGCAAAATCAGATACGAA
64 CTGAGA-ACGGATACATACAATTCCT-ACAAAATTATCACAATGCTAAGCAAAATCAGAT-CGAA
* * * *
123325288 GATCATCGAA-CTATGATGTTATATAATAAAATATGAATCTGAAATTTCC
126 AATCATC-AATCTATGATGTTATATAATAAAACAAGAATCTGAAATTTTC
* * * ** *
123325337 ATCTATTGTCCTT-TTTTATCTATATATTCTCAGGAACCAAACAGTAGCTAAATTATCAGTTAAA
1 ATCTATAGT-CTTCTTTT-TCCATATATTCTCAGGAACCAAACAGTAGATAAACGATCAATTAAA
* * * *
123325401 CTGAG--CGGATACATACAAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAA
64 CTGAGAACGGATACATAC-AATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAA
** *
123325464 GAATCAATGTATGATGTTATATAATAAAACAAGAATCTGAAATTTTC
128 TCATCAATCTATGATGTTATATAATAAAACAAGAATCTGAAATTTTC
* *
123325511 ATATATAGTCTTCTTTTTCCCAGTATACTCTCAGGAACCAAACAGTAGATAAACGATCAATTAAA
1 ATCTATAGTCTTCTTTTT-CCA-TATATTCTCAGGAACCAAACAGTAGATAAACGATCAATTAAA
* * * * **
123325576 CTGAGAACGGAGACTTACATTTCCTACAAACTTATCGGAATGCTAAGCAAAATCAGATCGAAAAT
64 CTGAGAACGGATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAAT
* * *
123325641 CATCAATTTATGACGTTATCA-AATAAAACAAGAATCTGAATTTTTC
129 CATCAATCTATGATGTTAT-ATAATAAAACAAGAATCTGAAATTTTC
123325687 ATCTATAGTCTTCTTTTTTCCAATATATTCTCAGGAACCAAAC
1 ATCTATAGTCTTC-TTTTTCC-ATATATTCTCAGGAACCAAAC
123325730 GATCAGTTAA
Statistics
Matches: 335, Mismatches: 44, Indels: 29
0.82 0.11 0.07
Matches are distributed among these distances:
173 7 0.02
174 64 0.19
175 75 0.22
176 157 0.47
177 29 0.09
178 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (174 bp):
ATCTATAGTCTTCTTTTTCCATATATTCTCAGGAACCAAACAGTAGATAAACGATCAATTAAACT
GAGAACGGATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAATCA
TCAATCTATGATGTTATATAATAAAACAAGAATCTGAAATTTTC
Found at i:123329303 original size:30 final size:30
Alignment explanation
Indices: 123329268--123329329 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
123329258 TTAAAAAAAA
*
123329268 AAGCATGGATTTGATCCAGAAAAAATGATT
1 AAGCATGGATTTGATCCAAAAAAAATGATT
123329298 AAGCATGGATTTGATCCAAAAAAAATGATT
1 AAGCATGGATTTGATCCAAAAAAAATGATT
123329328 AA
1 AA
123329330 CTTTCTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.47, C:0.10, G:0.18, T:0.26
Consensus pattern (30 bp):
AAGCATGGATTTGATCCAAAAAAAATGATT
Found at i:123331169 original size:20 final size:20
Alignment explanation
Indices: 123331122--123331171 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
123331112 GAAATACTTG
* *
123331122 TAAATAAATATTATTAATTT
1 TAAATAAATATAATTAATTA
**
123331142 TATTTAAATATAATTAATTA
1 TAAATAAATATAATTAATTA
123331162 TAAATAAATA
1 TAAATAAATA
123331172 CTACATGAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TAAATAAATATAATTAATTA
Found at i:123334549 original size:26 final size:26
Alignment explanation
Indices: 123334518--123334651 Score: 214
Period size: 26 Copynumber: 5.2 Consensus size: 26
123334508 CGAAATGCCC
* *
123334518 ATCATGGAATATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
123334544 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
123334570 ATCATGGAATATTTACTTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
123334596 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
123334622 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
123334648 ATCA
1 ATCA
123334652 ATTTGTACCA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:123334813 original size:10 final size:10
Alignment explanation
Indices: 123334798--123334825 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
123334788 TAGCCTATAG
123334798 CATTTTCAAA
1 CATTTTCAAA
123334808 CATTTTCAAA
1 CATTTTCAAA
123334818 CATTTTCA
1 CATTTTCA
123334826 CATAGGTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (10 bp):
CATTTTCAAA
Found at i:123337900 original size:63 final size:62
Alignment explanation
Indices: 123337829--123337957 Score: 240
Period size: 63 Copynumber: 2.1 Consensus size: 62
123337819 TTTTACTTGT
*
123337829 TATTTAGTGGCATGGTTAATAGTTTAGTGGAGTTGTTAATATACAAAAACATAAGTTTAAGTG
1 TATTTAGTGGCATGGTTAATAGTTTAGTGGAGTTGTTAATATAC-AAAACACAAGTTTAAGTG
123337892 TATTTAGTGGCATGGTTAATAGTTTAGTGGAGTTGTTAATATACAAAACACAAGTTTAAGTG
1 TATTTAGTGGCATGGTTAATAGTTTAGTGGAGTTGTTAATATACAAAACACAAGTTTAAGTG
123337954 TATT
1 TATT
123337958 AAAAATATAT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 21 0.32
63 44 0.68
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (62 bp):
TATTTAGTGGCATGGTTAATAGTTTAGTGGAGTTGTTAATATACAAAACACAAGTTTAAGTG
Found at i:123343450 original size:16 final size:16
Alignment explanation
Indices: 123343431--123343461 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
123343421 GTAAAAAATA
123343431 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
123343447 ATATAACATTTATAA
1 ATATAAAATTTATAA
123343462 ATAATGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:123365759 original size:34 final size:34
Alignment explanation
Indices: 123365721--123365789 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
123365711 GAAAGAAGAA
* *
123365721 AAGATTGAGGAACGATTGTGCACGAAAGGTTGAG
1 AAGATTGAGGAACGATCGTGCACAAAAGGTTGAG
*
123365755 AAGATTGAGGAACGATCGTGTACAAAAGGTTGAG
1 AAGATTGAGGAACGATCGTGCACAAAAGGTTGAG
123365789 A
1 A
123365790 CTAAGGATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.33, T:0.20
Consensus pattern (34 bp):
AAGATTGAGGAACGATCGTGCACAAAAGGTTGAG
Found at i:123367957 original size:18 final size:21
Alignment explanation
Indices: 123367930--123367972 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
123367920 TTTGTTAAGA
*
123367930 TTTAATAATG-TAA-CACAAT
1 TTTAATAATGCTAATCAAAAT
123367949 TTTAA-AATGCTAATCAAAAT
1 TTTAATAATGCTAATCAAAAT
123367969 TTTA
1 TTTA
123367973 CATTTTTCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 8 0.38
20 9 0.43
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (21 bp):
TTTAATAATGCTAATCAAAAT
Found at i:123370617 original size:21 final size:21
Alignment explanation
Indices: 123370566--123370615 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
123370556 TTTTTTAAAC
123370566 TTTTCTTTCTCTTTTCCCTTT
1 TTTTCTTTCTCTTTTCCCTTT
* * *
123370587 TCTTCTTTCTCTTTTTCTTATT
1 TTTTCTTTCTCTTTTCCCT-TT
123370609 TTTTCTT
1 TTTTCTT
123370616 CTTCTTCCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTCTTTCTCTTTTCCCTTT
Found at i:123372741 original size:20 final size:20
Alignment explanation
Indices: 123372716--123372755 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
123372706 GTTACGGTGT
123372716 CAAACTTATGAAATGATTAA
1 CAAACTTATGAAATGATTAA
123372736 CAAACTTATGAAATGATTAA
1 CAAACTTATGAAATGATTAA
123372756 AGCATTGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (20 bp):
CAAACTTATGAAATGATTAA
Found at i:123373148 original size:14 final size:14
Alignment explanation
Indices: 123373129--123373159 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
123373119 AAATAAGCAA
123373129 ATTAGTCCCAATAC
1 ATTAGTCCCAATAC
*
123373143 ATTAGTCCCAATCC
1 ATTAGTCCCAATAC
123373157 ATT
1 ATT
123373160 TCTACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (14 bp):
ATTAGTCCCAATAC
Found at i:123376267 original size:42 final size:42
Alignment explanation
Indices: 123376206--123376296 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
123376196 TATGGTCATA
* * *
123376206 ATTGTATGAATTTATTGATTATAATTGTAATTTCATTTATGC
1 ATTGTACGAATGTAGTGATTATAATTGTAATTTCATTTATGC
*
123376248 ATTGTACGAATGTAGTGATTATAATTGTAATTTTATTTATGC
1 ATTGTACGAATGTAGTGATTATAATTGTAATTTCATTTATGC
123376290 ATTGTAC
1 ATTGTAC
123376297 TAGTTTAGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.49
Consensus pattern (42 bp):
ATTGTACGAATGTAGTGATTATAATTGTAATTTCATTTATGC
Found at i:123378847 original size:32 final size:32
Alignment explanation
Indices: 123378787--123378849 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
123378777 AAGATTAGAT
**
123378787 TTAATAATATATATTAAATAAAATTATATAAA
1 TTAATAATATATAAAAAATAAAATTATATAAA
*
123378819 TTAATAATATA-AAAAAATTAAATATATATAA
1 TTAATAATATATAAAAAATAAAAT-TATATAA
123378850 TGAGAAGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (32 bp):
TTAATAATATATAAAAAATAAAATTATATAAA
Found at i:123379428 original size:27 final size:27
Alignment explanation
Indices: 123379398--123379456 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
123379388 TTATAATTTT
123379398 TAATAGTTAAATAACTAAAAAAAT-TAC
1 TAATAGTTAAATAA-TAAAAAAATATAC
* *
123379425 TAATAGTTGAATGATAAAAAAATATAC
1 TAATAGTTAAATAATAAAAAAATATAC
123379452 TAATA
1 TAATA
123379457 ATATTACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.31
Consensus pattern (27 bp):
TAATAGTTAAATAATAAAAAAATATAC
Found at i:123384265 original size:30 final size:30
Alignment explanation
Indices: 123384209--123384267 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
123384199 ATACAGAGAA
* *
123384209 ATTTTTACGAGAGTGAAATTGGAATTTTAT
1 ATTTTTACGAGAGTGAAAATAGAATTTTAT
* *
123384239 ATTTTTACGAGAGTTAAAATATAATTTTA
1 ATTTTTACGAGAGTGAAAATAGAATTTTA
123384268 CCATCATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.44
Consensus pattern (30 bp):
ATTTTTACGAGAGTGAAAATAGAATTTTAT
Found at i:123386114 original size:36 final size:36
Alignment explanation
Indices: 123386067--123386139 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
123386057 AGTGTTTAAT
123386067 TAATTTGTTTTATAAATAAGGACAAAATGTTGGTGC
1 TAATTTGTTTTATAAATAAGGACAAAATGTTGGTGC
*
123386103 TAATTTGTTTTATAAATAAGGACAAAATGTTTGTGC
1 TAATTTGTTTTATAAATAAGGACAAAATGTTGGTGC
123386139 T
1 T
123386140 TTCCACAGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (36 bp):
TAATTTGTTTTATAAATAAGGACAAAATGTTGGTGC
Found at i:123393287 original size:22 final size:22
Alignment explanation
Indices: 123393241--123393285 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
123393231 GACTTCAATA
*
123393241 TTCAATTTGGTACCTGAGTTTT
1 TTCAATTTGATACCTGAGTTTT
*
123393263 TTCAATTTGATA-TTGAGTTTT
1 TTCAATTTGATACCTGAGTTTT
123393284 TT
1 TT
123393286 TCCAATTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.56
Consensus pattern (22 bp):
TTCAATTTGATACCTGAGTTTT
Found at i:123395736 original size:35 final size:33
Alignment explanation
Indices: 123395665--123395744 Score: 83
Period size: 35 Copynumber: 2.4 Consensus size: 33
123395655 GGTCCGGCTC
* *
123395665 AAATTTAACTTA-AATGATTTTTATTATGTATCT
1 AAATTTAA-TTATAAAGATTTTTAATATGTATCT
123395698 AAATTTAATTATAAAGATATTTTAATATTGATAT-T
1 AAATTTAATTATAAAGAT-TTTTAATA-TG-TATCT
*
123395733 AAATTTTATTAT
1 AAATTTAATTAT
123395745 TATTATTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 3 0.08
33 13 0.32
34 7 0.17
35 14 0.35
36 3 0.08
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (33 bp):
AAATTTAATTATAAAGATTTTTAATATGTATCT
Found at i:123398967 original size:6 final size:6
Alignment explanation
Indices: 123398956--123398988 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
123398946 AATTATATGT
123398956 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
123398989 ATTAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:123398998 original size:18 final size:18
Alignment explanation
Indices: 123398959--123399016 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
123398949 TATATGTTTT
**
123398959 TTATTTTTATTTTTATTT
1 TTATTTTTATTTTTATAA
123398977 TTATTTTTATTTATTA-AA
1 TTATTTTTATTT-TTATAA
* *
123398995 TTATTTGTAATTTTTATGA
1 TTATTT-TTATTTTTATAA
123399014 TTA
1 TTA
123399017 GGTTGGGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 21 0.64
19 12 0.36
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTATTTTTATTTTTATAA
Found at i:123399016 original size:24 final size:24
Alignment explanation
Indices: 123398971--123399016 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
123398961 ATTTTTATTT
* *
123398971 TTATTTTTATTTTTATTTATTAAA
1 TTATTTTAATTTTTATTGATTAAA
123398995 TTATTTGTAATTTTTA-TGATTA
1 TTATTT-TAATTTTTATTGATTA
123399017 GGTTGGGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (24 bp):
TTATTTTAATTTTTATTGATTAAA
Found at i:123400475 original size:14 final size:14
Alignment explanation
Indices: 123400456--123400484 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
123400446 TTTTTTCAAG
123400456 TTAGGAATAGTATT
1 TTAGGAATAGTATT
123400470 TTAGGAATAGTATT
1 TTAGGAATAGTATT
123400484 T
1 T
123400485 GGGTAAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (14 bp):
TTAGGAATAGTATT
Found at i:123402193 original size:29 final size:29
Alignment explanation
Indices: 123402152--123402254 Score: 118
Period size: 29 Copynumber: 3.5 Consensus size: 29
123402142 TTACCTCAAA
123402152 TTACATTTTAGTCATTTATGTTTGAAATG
1 TTACATTTTAGTCATTTATGTTTGAAATG
* * ***
123402181 TTATATTTTAGTCACTTTTAT-TATCGCGTTG
1 TTACATTTTAGTCA--TTTATGT-TTGAAATG
*
123402212 TAACATTTTAGTCATTTATGTTTGAAATG
1 TTACATTTTAGTCATTTATGTTTGAAATG
123402241 TTACATTTTAGTCA
1 TTACATTTTAGTCA
123402255 CTTTTATTAT
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
29 35 0.60
30 2 0.03
31 21 0.36
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.51
Consensus pattern (29 bp):
TTACATTTTAGTCATTTATGTTTGAAATG
Found at i:123402220 original size:31 final size:31
Alignment explanation
Indices: 123402185--123402287 Score: 131
Period size: 31 Copynumber: 3.4 Consensus size: 31
123402175 GAAATGTTAT
*
123402185 ATTTTAGTCACTTTTATTATCGCGTTGTAAC
1 ATTTTAGTCACTTTTATTATTGCGTTGTAAC
*** *
123402216 ATTTTAGTCA--TTTATGT-TTGAAATGTTAC
1 ATTTTAGTCACTTTTAT-TATTGCGTTGTAAC
123402245 ATTTTAGTCACTTTTATTATTGCGTTGTAAC
1 ATTTTAGTCACTTTTATTATTGCGTTGTAAC
123402276 ATTTTAGTCACT
1 ATTTTAGTCACT
123402288 GAGCATTAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
29 22 0.37
30 2 0.03
31 35 0.59
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTTTAGTCACTTTTATTATTGCGTTGTAAC
Found at i:123402226 original size:60 final size:60
Alignment explanation
Indices: 123402154--123402285 Score: 246
Period size: 60 Copynumber: 2.2 Consensus size: 60
123402144 ACCTCAAATT
*
123402154 ACATTTTAGTCATTTATGTTTGAAATGTTATATTTTAGTCACTTTTATTATCGCGTTGTA
1 ACATTTTAGTCATTTATGTTTGAAATGTTACATTTTAGTCACTTTTATTATCGCGTTGTA
*
123402214 ACATTTTAGTCATTTATGTTTGAAATGTTACATTTTAGTCACTTTTATTATTGCGTTGTA
1 ACATTTTAGTCATTTATGTTTGAAATGTTACATTTTAGTCACTTTTATTATCGCGTTGTA
123402274 ACATTTTAGTCA
1 ACATTTTAGTCA
123402286 CTGAGCATTA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 70 1.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.51
Consensus pattern (60 bp):
ACATTTTAGTCATTTATGTTTGAAATGTTACATTTTAGTCACTTTTATTATCGCGTTGTA
Found at i:123405200 original size:37 final size:38
Alignment explanation
Indices: 123405128--123405207 Score: 101
Period size: 37 Copynumber: 2.1 Consensus size: 38
123405118 ACCAATTCTT
* * * *
123405128 TAATTTATACTTTTATAATTTCTTAAAGGATTAAAACA
1 TAATTTATACATTTATAAATTCTTAAAGCACTAAAACA
123405166 TAATTTATA-ATTTATAAATT-TTACAAGCACTAAAACA
1 TAATTTATACATTTATAAATTCTTA-AAGCACTAAAACA
123405203 TAATT
1 TAATT
123405208 GTCCCATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 3 0.08
37 25 0.68
38 9 0.24
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (38 bp):
TAATTTATACATTTATAAATTCTTAAAGCACTAAAACA
Found at i:123405888 original size:26 final size:26
Alignment explanation
Indices: 123405836--123405895 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
123405826 TGATTAATTC
*
123405836 AAAATA-ATTTTTAAAAAATTATAAA
1 AAAATATATTTTTAAAAAATAATAAA
* *
123405861 AAATTATATTTTTAAAAAA-AATCTAA
1 AAAATATATTTTTAAAAAATAAT-AAA
123405887 AAAATATAT
1 AAAATATAT
123405896 AAAAAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (26 bp):
AAAATATATTTTTAAAAAATAATAAA
Found at i:123405901 original size:21 final size:21
Alignment explanation
Indices: 123405875--123405917 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
123405865 TATATTTTTA
123405875 AAAAAAATCTAAAAAATATAT
1 AAAAAAATCTAAAAAATATAT
* *
123405896 AAAAAATTTTAAAAAATATAT
1 AAAAAAATCTAAAAAATATAT
123405917 A
1 A
123405918 GAATATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAAAATCTAAAAAATATAT
Found at i:123405902 original size:11 final size:11
Alignment explanation
Indices: 123405873--123405917 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
123405863 ATTATATTTT
* *
123405873 TAAAAAAAATC
1 TAAAAAATATA
123405884 TAAAAAATATA
1 TAAAAAATATA
*
123405895 TAAAAAAT-TT
1 TAAAAAATATA
123405905 TAAAAAATATA
1 TAAAAAATATA
123405916 TA
1 TA
123405918 GAATATTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAAATATA
Found at i:123405926 original size:19 final size:20
Alignment explanation
Indices: 123405884--123405926 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
123405874 AAAAAAAATC
*
123405884 TAAAAAATATATAAAAAATTT
1 TAAAAAATATAT-AAAAATAT
*
123405905 TAAAAAATATAT-AGAATAT
1 TAAAAAATATATAAAAATAT
123405924 TAA
1 TAA
123405927 TTTTGGGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.40
21 12 0.60
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAAAATATATAAAAATAT
Done.