Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 53 of 410
Found at i:13879677 original size:51 final size:51
Alignment explanation
Indices: 13879617--13879736 Score: 195
Period size: 51 Copynumber: 2.4 Consensus size: 51
13879607 AACCAAGTTA
* *
13879617 TCCGGATGAAATATTAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
* *
13879668 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
*
13879719 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
13879737 TAAGTTTAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
Found at i:13881888 original size:23 final size:23
Alignment explanation
Indices: 13881870--13881919 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
13881860 TCAATATTTT
13881870 TATAATTAAATTATTAATAAATA
1 TATAATTAAATTATTAATAAATA
*
13881893 TCTAATTAAATTATATTAATAAA-A
1 TATAATTAAA-T-TATTAATAAATA
13881917 TAT
1 TAT
13881920 TTTATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 9 0.39
24 4 0.17
25 10 0.43
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TATAATTAAATTATTAATAAATA
Found at i:13887764 original size:46 final size:46
Alignment explanation
Indices: 13887697--13887866 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
13887687 TGTAACCTGC
*
13887697 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTTGCAT
* * *
13887743 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--A-GGC-ATTTGCAT
* * * *
13887793 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTTGCAT
13887836 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
13887867 TTCGGATGCC
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 2 0.02
45 1 0.01
46 57 0.55
47 25 0.24
48 1 0.01
49 2 0.02
50 7 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTTGCAT
Found at i:13887811 original size:93 final size:93
Alignment explanation
Indices: 13887705--13887876 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
13887695 GCCCATAAGT
* * *
13887705 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13887770 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
13887798 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
13887863 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
13887877 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:13887891 original size:46 final size:46
Alignment explanation
Indices: 13887702--13887891 Score: 140
Period size: 46 Copynumber: 4.1 Consensus size: 46
13887692 CCTGCCCATA
* * *** *
13887702 AGTGAACTCGGACTCAACTCAACGAGCTC--AGGCGTTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC-T
* *
13887747 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
13887797 --CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCATACATCCT
*
13887841 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
13887887 AGTGA
1 AGTGA
13887892 CATGTCACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
44 8 0.07
45 1 0.01
46 60 0.53
47 29 0.25
48 5 0.04
49 4 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:13890351 original size:7 final size:7
Alignment explanation
Indices: 13890339--13890368 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
13890329 TATTGCTAGT
13890339 GTCTGAG
1 GTCTGAG
13890346 GTCTGAG
1 GTCTGAG
*
13890353 GTCTGAA
1 GTCTGAG
13890360 GTCTGAG
1 GTCTGAG
13890367 GT
1 GT
13890369 TCGAATCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.40, T:0.30
Consensus pattern (7 bp):
GTCTGAG
Found at i:13897082 original size:18 final size:19
Alignment explanation
Indices: 13897038--13897096 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
13897028 AGTTTAAAAT
*
13897038 ATTTTTAAAAACTAATTAAA
1 ATTTTTAAAAA-TAATTTAA
*
13897058 TATTTTTATAAA-AATTTAA
1 -ATTTTTAAAAATAATTTAA
13897077 ATTTTTAAAAATAATTTAA
1 ATTTTTAAAAATAATTTAA
13897096 A
1 A
13897097 ATTGTTTAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 10 0.29
19 14 0.41
21 10 0.29
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTTTTAAAAATAATTTAA
Found at i:13897082 original size:19 final size:20
Alignment explanation
Indices: 13897038--13897104 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 20
13897028 AGTTTAAAAT
13897038 ATTTTTAAAAACTAA-TTAAA
1 ATTTTTAAAAA-TAATTTAAA
*
13897058 TATTTTTATAAA-AATTT-AA
1 -ATTTTTAAAAATAATTTAAA
13897077 ATTTTTAAAAATAATTTAAA
1 ATTTTTAAAAATAATTTAAA
13897097 ATTGTTTA
1 ATT-TTTA
13897105 GAATTTATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 10 0.25
19 9 0.22
20 7 0.17
21 14 0.35
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (20 bp):
ATTTTTAAAAATAATTTAAA
Found at i:13898479 original size:54 final size:54
Alignment explanation
Indices: 13898346--13898479 Score: 148
Period size: 54 Copynumber: 2.5 Consensus size: 54
13898336 CAAAGTTGGG
* * *
13898346 ACACACGGCCGTGTC-CTAGCCCGTGTCTCAAATCATGTAACTCACTGACTTAAT
1 ACACACGGCCGTGTCTC-AGACCGTGTCTCAAACCATATAACTCACTGACTTAAT
* * * * *
13898400 ACACATGGCCGTGT-TATAGATCGTGTGC-CAAACCATATGACTCACTGACTTGAT
1 ACACACGGCCGTGTCT-CAGACCGTGT-CTCAAACCATATAACTCACTGACTTAAT
13898454 ACACACGGCCGTGTCTCAGACCGTGT
1 ACACACGGCCGTGTCTCAGACCGTGT
13898480 ATGGTACATG
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
54 63 0.97
55 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (54 bp):
ACACACGGCCGTGTCTCAGACCGTGTCTCAAACCATATAACTCACTGACTTAAT
Found at i:13901788 original size:15 final size:16
Alignment explanation
Indices: 13901765--13901798 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
13901755 TTTTTGAAAG
*
13901765 AAAATTATTTTATA-A
1 AAAAATATTTTATATA
13901780 AAAAATATTTTATATA
1 AAAAATATTTTATATA
13901796 AAA
1 AAA
13901799 TAAATGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAAATATTTTATATA
Found at i:13902303 original size:28 final size:28
Alignment explanation
Indices: 13902272--13902325 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
13902262 ATTGTTGTGA
13902272 ATCTTATGTTTGAAA-ATTGATATATTGC
1 ATCTTATGTTT-AAATATTGATATATTGC
* *
13902300 ATCTTGTGTTTAAATTTTGATATATT
1 ATCTTATGTTTAAATATTGATATATT
13902326 ACATTCTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.52
Consensus pattern (28 bp):
ATCTTATGTTTAAATATTGATATATTGC
Found at i:13904265 original size:30 final size:30
Alignment explanation
Indices: 13904229--13904359 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
13904219 GACAAGATTG
* * * * *
13904229 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
13904259 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
13904287 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
13904317 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
13904346 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
13904360 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:13904320 original size:58 final size:58
Alignment explanation
Indices: 13904229--13904359 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
13904219 GACAAGATTG
* * * * * *
13904229 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
13904287 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
13904346 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
13904360 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:13912224 original size:30 final size:30
Alignment explanation
Indices: 13912188--13912318 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
13912178 GACAAGATTG
* * * * *
13912188 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
13912218 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
13912246 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
13912276 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
13912305 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
13912319 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:13912279 original size:58 final size:58
Alignment explanation
Indices: 13912188--13912318 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
13912178 GACAAGATTG
* * * * * *
13912188 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
13912246 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
13912305 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
13912319 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:13921622 original size:19 final size:18
Alignment explanation
Indices: 13921594--13921635 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
13921584 CAGAAAATAA
13921594 TTTTTAGAAAATGATTTAT
1 TTTTTAG-AAATGATTTAT
*
13921613 TTTTTGGAAATGATTTAT
1 TTTTTAGAAATGATTTAT
13921631 TTTTT
1 TTTTT
13921636 TGGTGTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.60
Consensus pattern (18 bp):
TTTTTAGAAATGATTTAT
Found at i:13939761 original size:41 final size:42
Alignment explanation
Indices: 13939707--13939788 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 42
13939697 CCTTCCTTTT
*
13939707 ATATTTAAT-AA-A-TAATAAAATAATAAAATATCTTATTAAA
1 ATATTTAATAAATATTAATAAAATAAT-AAATATCTAATTAAA
* *
13939747 ATATCTTATTAAATATTAATAAAATAATATATATCTAATTAA
1 ATAT-TTAATAAATATTAATAAAATAATAAATATCTAATTAA
13939789 TAATTATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
40 4 0.11
41 4 0.11
42 2 0.06
43 13 0.37
44 12 0.34
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (42 bp):
ATATTTAATAAATATTAATAAAATAATAAATATCTAATTAAA
Found at i:13939762 original size:12 final size:13
Alignment explanation
Indices: 13939730--13939759 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13939720 AATAAAATAA
13939730 TAAAATATCTTAT
1 TAAAATATCTTAT
13939743 TAAAATATCTTAT
1 TAAAATATCTTAT
13939756 TAAA
1 TAAA
13939760 TATTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATATCTTAT
Found at i:13940713 original size:40 final size:40
Alignment explanation
Indices: 13940669--13940749 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
13940659 TGTTATCTGG
13940669 TTAGATTTGATGCTTAGATATGAAAAATGACTAGTTTGTA
1 TTAGATTTGATGCTTAGATATGAAAAATGACTAGTTTGTA
13940709 TTAGATTTGATGCTTAGATATGAAAAATGACTAGTTTGTA
1 TTAGATTTGATGCTTAGATATGAAAAATGACTAGTTTGTA
13940749 T
1 T
13940750 AATGAAAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.41
Consensus pattern (40 bp):
TTAGATTTGATGCTTAGATATGAAAAATGACTAGTTTGTA
Found at i:13945510 original size:16 final size:16
Alignment explanation
Indices: 13945489--13945527 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
13945479 ATAGTGAAAT
13945489 ATTATT-TTATTATTAA
1 ATTATTATTA-TATTAA
*
13945505 ATTATTATTATATTAC
1 ATTATTATTATATTAA
13945521 ATTATTA
1 ATTATTA
13945528 AAATAAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTATTATTATATTAA
Found at i:13948868 original size:40 final size:39
Alignment explanation
Indices: 13948773--13948898 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
13948763 CTGGAAATTA
* * **
13948773 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTTATTC
13948811 TATTCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTATTC
1 TA-TCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTTATTC
* * *
13948852 TATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATTA
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTATTC
13948892 TATCCGG
1 TATCCGG
13948899 TTATATTCCG
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 5 0.07
39 26 0.34
40 40 0.53
41 5 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTTATTC
Found at i:13952021 original size:48 final size:48
Alignment explanation
Indices: 13951963--13952067 Score: 165
Period size: 48 Copynumber: 2.2 Consensus size: 48
13951953 CACATAGTAG
* * * *
13951963 GATGCCAATGCCATATCCCGGATATTGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACATC
*
13952011 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACATC
13952059 GATGCCAAT
1 GATGCCAAT
13952068 AGTCCAGCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACATC
Found at i:13952082 original size:43 final size:46
Alignment explanation
Indices: 13951989--13952087 Score: 134
Period size: 48 Copynumber: 2.2 Consensus size: 46
13951979 CCCGGATATT
*
13951989 GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATG
1 GTCTTACATGGGATCACACATCGATGCCAAT--CATGTCCCAGACATG
13952037 GTCTTACATGGGATCACACATCGATGCCAAT-A-GT-CCAG-CTATG
1 GTCTTACATGGGATCACACATCGATGCCAATCATGTCCCAGAC-ATG
13952080 GTCTTACA
1 GTCTTACA
13952088 CTATATTACA
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
42 1 0.02
43 15 0.31
44 2 0.04
45 1 0.02
48 30 0.61
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (46 bp):
GTCTTACATGGGATCACACATCGATGCCAATCATGTCCCAGACATG
Found at i:13956183 original size:48 final size:48
Alignment explanation
Indices: 13956102--13956196 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
13956092 CATGATTGAT
* *
13956102 GAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGATAC
1 GAGATCCCGTGTAAGACCATATCAGGGACATGGCATCAGCATCGATAC
* * * * *
13956150 GAGATCTCGTGTAATACCATATCAGGGATATGGCTTCGGCATCGATA
1 GAGATCCCGTGTAAGACCATATCAGGGACATGGCATCAGCATCGATA
13956197 AGTGATTTCG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (48 bp):
GAGATCCCGTGTAAGACCATATCAGGGACATGGCATCAGCATCGATAC
Found at i:13957691 original size:21 final size:21
Alignment explanation
Indices: 13957660--13957720 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
13957650 CCTTTGAAAC
13957660 AGGGC-ACACGCTCGTGTGGA
1 AGGGCAACACGCTCGTGTGGA
*
13957680 AGGGCAACACGCTCATGTGGA
1 AGGGCAACACGCTCGTGTGGA
13957701 AGGGCAACACGC-CTGTGTGG
1 AGGGCAACACGCTC-GTGTGG
13957721 TTATTATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 6 0.16
21 31 0.84
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCTCGTGTGGA
Found at i:13958979 original size:46 final size:48
Alignment explanation
Indices: 13958730--13959095 Score: 249
Period size: 46 Copynumber: 7.7 Consensus size: 48
13958720 AGGGTATAAT
* *
13958730 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCA--TC-AA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTCGAG
* * * ** ** *
13958777 GTCGATGCCATGTCCC-GAGCATGGTCTTACACTGACTATTGAAATCAAG
1 GCCGATG-CATGTCCCAGA-CATGGTCTTACACTGGCTCTACATCTCGAG
* * * * * * *
13958826 GCCGACTCCATGTCCCTGACATAGTCTTACACTAGCTCTCACATATCCAT
1 GCCGA-TGCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCTCGAG
* *
13958876 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTTGTA-
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCG-AG
* *
13958922 GCCAATGCATGTCCCAGACAT-GTCTTAGACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAG
* ** * * *
13958968 GCTGATGCATGTCCCAGACAT-GTCTTACACTACCTCT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAG
* * * *
13959014 GCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGA-TGCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGAG
*
13959062 GCTGATGCATGTCCCAGACAT-GTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGC
13959096 ACACAAATAA
Statistics
Matches: 253, Mismatches: 49, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
44 9 0.04
45 16 0.06
46 74 0.29
47 64 0.25
48 22 0.09
49 32 0.13
50 36 0.14
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAG
Found at i:13959065 original size:94 final size:97
Alignment explanation
Indices: 13958723--13959093 Score: 302
Period size: 94 Copynumber: 3.9 Consensus size: 97
13958713 CAAACATAGG
* * *
13958723 GTAT-AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA--GT-C-GAT
1 GTATCAATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTC-TACAT-AATCGTGCTGAT
*
13958783 GCCATGTCCC-GAGCATGGTCTTACACTGA-CTATT
64 GCCATGTCCCAGA-CATGGTCTTACACTGACCT-CT
* * * * * * * * *
13958817 GAAATCAAGGCCGACTCCATGTCCCTGACATAGTCTTACACTAGCTCTCACAT-ATCCATGCCGA
1 G-TATCAATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATAAT-CGTGCTGA
13958881 TGCCATGTCCCAGACATGGTCTTACACTGACACATCT
63 TGCCATGTCCCAGACATGGTCTTACACTGAC-C-TCT
* * * * *
13958918 -TGT--A-GCCAA-TGCATGTCCCAGACAT-GTCTTAGACTGGCT-TACAT-CTCGAGGCTGATG
1 GTATCAATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAATCG-TGCTGATG
13958975 -CATGTCCCAGACAT-GTCTTACACT-ACCTCT
65 CCATGTCCCAGACATGGTCTTACACTGACCTCT
*
13959005 CGTCTCAATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGAT
1 -GTATCAATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAATCGT-GCTGAT
13959068 G-CATGTCCCAGACAT-GTCTTACACTG
64 GCCATGTCCCAGACATGGTCTTACACTG
13959094 GCACACAAAT
Statistics
Matches: 227, Mismatches: 26, Indels: 47
0.76 0.09 0.16
Matches are distributed among these distances:
87 3 0.01
88 1 0.00
89 4 0.02
90 10 0.04
91 16 0.07
92 16 0.07
93 16 0.07
94 62 0.27
95 19 0.08
96 42 0.19
97 2 0.01
98 1 0.00
99 30 0.13
100 2 0.01
101 2 0.01
102 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (97 bp):
GTATCAATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAATCGTGCTGATGC
CATGTCCCAGACATGGTCTTACACTGACCTCT
Found at i:13959087 original size:140 final size:144
Alignment explanation
Indices: 13958727--13959103 Score: 402
Period size: 140 Copynumber: 2.6 Consensus size: 144
13958717 CATAGGGTAT
13958727 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-GT-CGATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CAT-AATGTGCGATG-CATGT
* ** *
13958790 CCC-GAGCATGGTCTTACACTGACTATTGAAATCAAGGCCGACTCCATGTCCCTGACATAGTCTT
63 CCCAGA-CAT-GTCTTACACTGGCTATACAAATCAAGGCCGACTCCATGTCCCAGACATAGTCTT
13958854 ACACTAGCTCTCACATATC
126 ACACTAGCTCTCACATATC
* * * *
13958873 CATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-T--TGTAGCCAATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAATGT-G-CGATGCATGTC
* ** * * *
13958935 CCAGACATGTCTTAGACTGGCT-TACATCTCGAGGCTGA-TGCATGTCCCAGACAT-GTCTTACA
64 CCAGACATGTCTTACACTGGCTATACAAATCAAGGCCGACTCCATGTCCCAGACATAGTCTTACA
* * *
13958997 CTA-C-CTCTCGTCTC
129 CTAGCTCTCACATATC
* *
13959011 AATGCCAATTCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCTGATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAATGT-GC-GATGCATGTC
*
13959075 CCAGACATGTCTTACACTGGC-ACACAAAT
64 CCAGACATGTCTTACACTGGCTATACAAAT
13959104 AACCCGAATG
Statistics
Matches: 193, Mismatches: 28, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
137 2 0.01
138 44 0.23
139 2 0.01
140 48 0.25
141 14 0.07
142 12 0.06
143 12 0.06
144 12 0.06
145 7 0.04
146 40 0.21
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (144 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAATGTGCGATGCATGTCCC
AGACATGTCTTACACTGGCTATACAAATCAAGGCCGACTCCATGTCCCAGACATAGTCTTACACT
AGCTCTCACATATC
Found at i:13970035 original size:29 final size:29
Alignment explanation
Indices: 13969871--13970034 Score: 274
Period size: 29 Copynumber: 5.7 Consensus size: 29
13969861 GCTTGGAAGG
13969871 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
13969900 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
13969929 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
13969958 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
13969987 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
13970016 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
13970035 GATCGTTTAT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:13978079 original size:29 final size:29
Alignment explanation
Indices: 13977915--13978078 Score: 274
Period size: 29 Copynumber: 5.7 Consensus size: 29
13977905 GCTTGGAAGG
13977915 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
13977944 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
13977973 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
13978002 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
13978031 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
13978060 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
13978079 GATCGTTTAT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:13984299 original size:24 final size:24
Alignment explanation
Indices: 13984272--13984321 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
13984262 CTCAATGTAT
13984272 GATTATTTTGAGATATTATCGATA
1 GATTATTTTGAGATATTATCGATA
13984296 GATTATTTTGAGATATTATCGATA
1 GATTATTTTGAGATATTATCGATA
13984320 GA
1 GA
13984322 AATTATAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.44
Consensus pattern (24 bp):
GATTATTTTGAGATATTATCGATA
Found at i:13987249 original size:49 final size:47
Alignment explanation
Indices: 13987130--13987300 Score: 147
Period size: 49 Copynumber: 3.7 Consensus size: 47
13987120 AGGGTATAAT
* * * *
13987130 GCCGATGCCAGGTCCCAAACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
* * * * *
13987177 GTCAATGCCATGTCCTAGGCATGGTCTTACACTGACT-ATCAAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AA
* *
13987226 GCCGATGCCATGTCCCAGACATGGTCTTACGCTGACACATC--TCGTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATC--AA
*
13987273 -CCGATG-CATGTCCCAAACAT-GTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
13987301 GTGGCTTACA
Statistics
Matches: 100, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
44 7 0.07
45 13 0.13
46 11 0.11
47 31 0.31
48 3 0.03
49 32 0.32
50 3 0.03
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
Found at i:13990269 original size:26 final size:26
Alignment explanation
Indices: 13990232--13990367 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
13990222 TGATACAAAT
* *
13990232 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13990258 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
13990284 TGGTAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13990310 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13990336 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13990362 TGATAA
1 TGATAA
13990368 GAATATCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:13992395 original size:136 final size:137
Alignment explanation
Indices: 13992149--13992434 Score: 504
Period size: 136 Copynumber: 2.1 Consensus size: 137
13992139 GAGTAGTCTC
13992149 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
13992214 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
13992279 A-TAGTTA
131 ACT-GTTA
*
13992286 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
13992350 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
13992415 ACTGTTA
131 ACTGTTA
**
13992422 CCTGAATGGGCTT
1 CCCAAATGGGCTT
13992435 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
136 122 0.85
137 21 0.15
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:13998640 original size:22 final size:22
Alignment explanation
Indices: 13998612--13998674 Score: 90
Period size: 22 Copynumber: 2.8 Consensus size: 22
13998602 TTAAGTAAAA
13998612 GTTTGTTATGTGAAATGGAATT
1 GTTTGTTATGTGAAATGGAATT
*
13998634 GTTTGTTATGTAAAATGGAATT
1 GTTTGTTATGTGAAATGGAATT
*
13998656 GTTATGTTCATTTGAAATG
1 GTT-TGTT-ATGTGAAATG
13998675 AAAAGGATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 24 0.67
23 4 0.11
24 8 0.22
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.46
Consensus pattern (22 bp):
GTTTGTTATGTGAAATGGAATT
Found at i:14007720 original size:34 final size:35
Alignment explanation
Indices: 14007647--14007733 Score: 90
Period size: 34 Copynumber: 2.5 Consensus size: 35
14007637 AGGTAAGTAT
14007647 ATGT-AAGCTTATATTGAACTTGATTATTCGATTAC
1 ATGTGAAG-TTATATTGAACTTGATTATTCGATTAC
* * **
14007682 ATGTGAA-TTATATTGAACTT-ATATATTTGGTTTT
1 ATGTGAAGTTATATTGAACTTGAT-TATTCGATTAC
*
14007716 ATGTGAAGTTATTTTGAA
1 ATGTGAAGTTATATTGAA
14007734 TGTGCATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.05
34 27 0.61
35 13 0.30
36 2 0.05
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTGATTATTCGATTAC
Found at i:14009396 original size:18 final size:18
Alignment explanation
Indices: 14009350--14009401 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
14009340 TCAAGATTCA
*
14009350 CATA-TCATTTCATCATTT
1 CATATTCATTTC-TCATCT
14009368 CATATTTCATTTCTCATCT
1 CATA-TTCATTTCTCATCT
14009387 CATATTCATTTCTCA
1 CATATTCATTTCTCA
14009402 ACTTTTCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 15 0.48
19 9 0.29
20 7 0.23
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (18 bp):
CATATTCATTTCTCATCT
Found at i:14011937 original size:22 final size:22
Alignment explanation
Indices: 14011898--14011941 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14011888 AAGACCCTAA
14011898 ATTTTTCTTTTCCTTTTCTTTC
1 ATTTTTCTTTTCCTTTTCTTTC
*
14011920 ATTTTT-TTTTCTTCTTTCTTTC
1 ATTTTTCTTTTCCT-TTTCTTTC
14011942 CCTACTATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (22 bp):
ATTTTTCTTTTCCTTTTCTTTC
Found at i:14012016 original size:21 final size:20
Alignment explanation
Indices: 14011992--14012039 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
14011982 TTTATTTCTT
14011992 TTATTTATTAAAACTATTAT-A
1 TTATTTATTAAAA--ATTATAA
*
14012013 TTATTATATTTAAAATTATAA
1 TTATT-TATTAAAAATTATAA
14012034 TTATTT
1 TTATTT
14012040 TTCTTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 6 0.25
21 11 0.46
22 7 0.29
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTATTTATTAAAAATTATAA
Found at i:14012559 original size:19 final size:19
Alignment explanation
Indices: 14012524--14012560 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14012514 TACACAACTC
*
14012524 AATTTTACATTAAATTTCA
1 AATTTTACACTAAATTTCA
*
14012543 AATTTTACACTATATTTC
1 AATTTTACACTAAATTTC
14012561 TTAAACTGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTTACACTAAATTTCA
Found at i:14013030 original size:3 final size:3
Alignment explanation
Indices: 14013022--14013199 Score: 254
Period size: 3 Copynumber: 60.3 Consensus size: 3
14013012 TCAACTTTCC
* * *
14013022 TAT TAT TAT TAT TAG TAT TAG TAT TAT TA- TAT TAT TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
14013069 TAT TAC TAT TAT TAC TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
14013116 TAT TAT TAT TAT TAT TAG TAT TAG TAT TAT TAT TAG TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
14013163 TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14013200 GTAACGCCTC
Statistics
Matches: 154, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
2 6 0.04
3 148 0.96
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:14013550 original size:26 final size:26
Alignment explanation
Indices: 14013521--14013624 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
14013511 TGGTACAAAT
14013521 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14013547 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14013573 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14013599 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14013625 AGATGGGAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14014584 original size:3 final size:3
Alignment explanation
Indices: 14014576--14014617 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
14014566 ATTATGTGGT
14014576 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14014618 CTGACCCAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14018643 original size:10 final size:11
Alignment explanation
Indices: 14018616--14018649 Score: 54
Period size: 10 Copynumber: 3.3 Consensus size: 11
14018606 TATTTTAGAT
14018616 TTTAAAAATTA
1 TTTAAAAATTA
14018627 TTT-AAAA-TA
1 TTTAAAAATTA
14018636 TTTAAAAATTA
1 TTTAAAAATTA
14018647 TTT
1 TTT
14018650 TGATTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 5 0.24
10 8 0.38
11 8 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTAAAAATTA
Found at i:14018907 original size:13 final size:13
Alignment explanation
Indices: 14018889--14018915 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14018879 TGCCTAAATT
14018889 TTTTTATTTTTCA
1 TTTTTATTTTTCA
14018902 TTTTTATTTTTCA
1 TTTTTATTTTTCA
14018915 T
1 T
14018916 ATATCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTATTTTTCA
Found at i:14019279 original size:20 final size:18
Alignment explanation
Indices: 14019238--14019280 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
14019228 ATATATTTTT
* *
14019238 ATTTTTAATAAATATTAT
1 ATTTTTAATAAATATCAA
14019256 ATTTTTATATAAAATATCAA
1 ATTTTTA-AT-AAATATCAA
14019276 ATTTT
1 ATTTT
14019281 ATGTATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 2 0.10
20 12 0.57
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTTAATAAATATCAA
Found at i:14019331 original size:23 final size:26
Alignment explanation
Indices: 14019289--14019365 Score: 76
Period size: 25 Copynumber: 3.1 Consensus size: 26
14019279 TTATGTATTT
*
14019289 TAAATTTAATAATGTTATAAAATTA-
1 TAAATTTAAAAATGTTATAAAATTAC
14019314 TAAA-TTAAAAAT-TTATAAAATTAC
1 TAAATTTAAAAATGTTATAAAATTAC
*
14019338 TAAA---AGAACATGTTTATAAAATTAC
1 TAAATTTA-AAAATG-TTATAAAATTAC
14019363 TAA
1 TAA
14019366 TAGATTTGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
22 1 0.02
23 15 0.33
24 11 0.24
25 19 0.41
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (26 bp):
TAAATTTAAAAATGTTATAAAATTAC
Found at i:14022050 original size:16 final size:17
Alignment explanation
Indices: 14022011--14022052 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
14022001 TTAAGTTGCA
14022011 TTCTTTGGCTCATTTTCG
1 TTCTTT-GCTCATTTTCG
*
14022029 TT-TTTGCTC-TTTTCT
1 TTCTTTGCTCATTTTCG
14022044 TTCTTTGCT
1 TTCTTTGCT
14022053 TAAGCATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 10 0.45
17 3 0.14
18 2 0.09
ACGTcount: A:0.02, C:0.21, G:0.12, T:0.64
Consensus pattern (17 bp):
TTCTTTGCTCATTTTCG
Found at i:14024580 original size:21 final size:21
Alignment explanation
Indices: 14024556--14024599 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14024546 ACTTTGAACA
* *
14024556 GATTGTTTTGTTGATTGACTC
1 GATTCTTTTGTTGATTGAATC
*
14024577 GATTCTTTTGTTGTTTGAATC
1 GATTCTTTTGTTGATTGAATC
14024598 GA
1 GA
14024600 CATTATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.09, G:0.23, T:0.52
Consensus pattern (21 bp):
GATTCTTTTGTTGATTGAATC
Found at i:14026109 original size:2 final size:2
Alignment explanation
Indices: 14026092--14026128 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
14026082 CAAATTTACG
* *
14026092 TA TA TG TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14026129 GTAATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:14028832 original size:12 final size:12
Alignment explanation
Indices: 14028815--14028839 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14028805 AGAGACCCAA
14028815 GGAATGAGAAGT
1 GGAATGAGAAGT
14028827 GGAATGAGAAGT
1 GGAATGAGAAGT
14028839 G
1 G
14028840 ACAGCTTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.16
Consensus pattern (12 bp):
GGAATGAGAAGT
Found at i:14030446 original size:3 final size:3
Alignment explanation
Indices: 14030379--14030428 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
14030369 CGACTGTTGT
* * * * *
14030379 TGC TGC TGC TGC TGC TGC TGC TGC TGT TGT TGT TGT TGC TGC TGC AGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
14030427 TG
1 TG
14030429 GGAAAGCTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.02, C:0.24, G:0.34, T:0.40
Consensus pattern (3 bp):
TGC
Found at i:14032054 original size:7 final size:7
Alignment explanation
Indices: 14032029--14032061 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
14032019 GCAAGGCATT
14032029 AAAAAGA
1 AAAAAGA
14032036 ATAAAA-A
1 A-AAAAGA
14032043 AAAAAGA
1 AAAAAGA
14032050 AAAAAGA
1 AAAAAGA
14032057 AAAAA
1 AAAAA
14032062 AAAGGAAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (7 bp):
AAAAAGA
Found at i:14037228 original size:2 final size:2
Alignment explanation
Indices: 14037221--14037247 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14037211 CTCAATGATG
14037221 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14037248 AACTACTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14043218 original size:12 final size:12
Alignment explanation
Indices: 14043201--14043249 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
14043191 ACAGTACGTA
14043201 AACAGTAATCA-T
1 AACAGTAAT-AGT
*
14043213 AACAGTAGTAGT
1 AACAGTAATAGT
14043225 AACAGTAATAGT
1 AACAGTAATAGT
*
14043237 AACAGTAACAGT
1 AACAGTAATAGT
14043249 A
1 A
14043250 TTCAACATAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
11 1 0.03
12 32 0.97
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.22
Consensus pattern (12 bp):
AACAGTAATAGT
Found at i:14043231 original size:6 final size:6
Alignment explanation
Indices: 14043201--14043249 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
14043191 ACAGTACGTA
** *
14043201 AACAGT AATCA-T AACAGT AGTAGT AACAGT AATAGT AACAGT AACAGT
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT
14043249 A
1 A
14043250 TTCAACATAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 2 0.06
6 31 0.89
7 2 0.06
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.22
Consensus pattern (6 bp):
AACAGT
Found at i:14043282 original size:51 final size:51
Alignment explanation
Indices: 14043223--14043340 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
14043213 AACAGTAGTA
* *
14043223 GTAACAGTAATAGTAACAGTAACAGTATTCAACATACAAAGTGCTGAATCT-
1 GTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAT-TG
* * * *
14043274 GTAACAGTAACAGTAATAGTAACAGTATTCGACACACAAAGTGTTGGATTG
1 GTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATTG
14043325 GTAACAGTAACAGTAA
1 GTAACAGTAACAGTAA
14043341 GTAGTCGGCA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.02
51 59 0.98
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.25
Consensus pattern (51 bp):
GTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATTG
Found at i:14043589 original size:40 final size:40
Alignment explanation
Indices: 14043543--14043629 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
14043533 AATTCATTAC
* *
14043543 TTCAGTAA-TTTCACAGTTCAATGCAGTACGCATAACAATA
1 TTCAGTAACTTT-ACAATTCAATGCAGTACGCAAAACAATA
* *
14043583 TTCAGTAACTTTACAATTCAATTCAGTACTCAAAACAATA
1 TTCAGTAACTTTACAATTCAATGCAGTACGCAAAACAATA
14043623 TTCAGTA
1 TTCAGTA
14043630 TTCCATAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 39 0.93
41 3 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (40 bp):
TTCAGTAACTTTACAATTCAATGCAGTACGCAAAACAATA
Found at i:14043978 original size:17 final size:17
Alignment explanation
Indices: 14043956--14043990 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14043946 CTTTTAGCTT
*
14043956 TGTTTTCTTTTGTTTTA
1 TGTTTTCTTTTCTTTTA
14043973 TGTTTTCTTTTCTTTTA
1 TGTTTTCTTTTCTTTTA
14043990 T
1 T
14043991 TTCATTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.09, G:0.09, T:0.77
Consensus pattern (17 bp):
TGTTTTCTTTTCTTTTA
Found at i:14044043 original size:20 final size:20
Alignment explanation
Indices: 14044018--14044066 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
14044008 ATATTTAAGT
14044018 TAATTAATAATTATAAAATA
1 TAATTAATAATTATAAAATA
*
14044038 TAATTAATAATTATAAAGTA
1 TAATTAATAATTATAAAATA
14044058 TAATTAATA
1 TAATTAATA
14044067 CATTTGTACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
TAATTAATAATTATAAAATA
Found at i:14044313 original size:25 final size:23
Alignment explanation
Indices: 14044269--14044329 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
14044259 ATTTTGATTT
*
14044269 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
14044293 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
14044317 ATATAAATTATAT
1 AT-TTAATTATAT
14044330 TTAAATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:14044332 original size:35 final size:35
Alignment explanation
Indices: 14044277--14044356 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
14044267 TTATTTAATA
* *
14044277 ATATAATAT-CATTATAATTTAATTATCATAAATT
1 ATATAATATAAATTATAATTTAAATATCATAAATT
*
14044311 CATATAATATAAATTAT-ATTTAAATATCATTAATT
1 -ATATAATATAAATTATAATTTAAATATCATAAATT
14044346 ATATAAT-TAAA
1 ATATAATATAAA
14044357 ACAAATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 25 0.61
36 5 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (35 bp):
ATATAATATAAATTATAATTTAAATATCATAAATT
Found at i:14045391 original size:48 final size:48
Alignment explanation
Indices: 14045311--14045482 Score: 178
Period size: 48 Copynumber: 3.7 Consensus size: 48
14045301 CATGATTAAT
*
14045311 GAGATCCCGTGTAAGACCATGTCTAGGG-TATGGCATCAGCATCGATAC
1 GAGATCCCGTGTAAGACCATGTC-AGGGATATGGCATCAGCATCGATAA
* *
14045359 GAGATCCCGTGTAAGACCATATCAGGGATATGGCTTCAGCATCGATAA
1 GAGATCCCGTGTAAGACCATGTCAGGGATATGGCATCAGCATCGATAA
* ** * *
14045407 GTGATTTCGTATAAGACCATGTCTGGGATATGGCATC-G-AT--AT--
1 GAGATCCCGTGTAAGACCATGTCAGGGATATGGCATCAGCATCGATAA
* * * *
14045449 GAGGTCCCGTATAAGACCATGTCCGGGACATGGC
1 GAGATCCCGTGTAAGACCATGTCAGGGATATGGC
14045483 GTTGGCATCG
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 28 0.26
44 2 0.02
46 2 0.02
47 5 0.05
48 70 0.65
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
GAGATCCCGTGTAAGACCATGTCAGGGATATGGCATCAGCATCGATAA
Found at i:14045482 original size:90 final size:89
Alignment explanation
Indices: 14045349--14045574 Score: 227
Period size: 90 Copynumber: 2.5 Consensus size: 89
14045339 TATGGCATCA
* * * * *
14045349 GCATCGATACGAGATCCCGTGTAAGACCATATCAGGGATATGGCTTCAGCATCGATAAGTGATTT
1 GCATCGATATGAGGTCCCGTGTAAGACCATATCAGGGACATGGCTT-AGCATCGATAAGAGACTT
* * *
14045414 CGTATAAGACCATGTCTGGGATATG
65 CGTATAAAACCATATCTAGGATATG
* * * * **
14045439 GCATCGATATGAGGTCCCGTATAAGACCATGTCCGGGACATGGCGTTGGCATCGATTCGAGACTT
1 GCATCGATATGAGGTCCCGTGTAAGACCATATCAGGGACATGGC-TTAGCATCGATAAGAGACTT
*
14045504 CGTATAAAACCATATTTAGGATATG
65 CGTATAAAACCATATCTAGGATATG
* * ** * * * *
14045529 GCATCAATGTGTCGTTCCATGTAAGACCATCTCTGGGACATGGCTT
1 GCATCGATATGAGGTCCCGTGTAAGACCATATCAGGGACATGGCTT
14045575 TGGCACCCTA
Statistics
Matches: 111, Mismatches: 24, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
89 2 0.02
90 107 0.96
91 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (89 bp):
GCATCGATATGAGGTCCCGTGTAAGACCATATCAGGGACATGGCTTAGCATCGATAAGAGACTTC
GTATAAAACCATATCTAGGATATG
Found at i:14050976 original size:33 final size:33
Alignment explanation
Indices: 14050939--14051006 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
14050929 CTAGATGATA
*
14050939 TTGAAATAAATGATTCATTCCTTGAAGAACAAT
1 TTGAAATAAATGATTCATTCCCTGAAGAACAAT
14050972 TTGAAATAAATGATTCATTCCCTGAAGAACAAT
1 TTGAAATAAATGATTCATTCCCTGAAGAACAAT
14051005 TT
1 TT
14051007 TTTGCTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
TTGAAATAAATGATTCATTCCCTGAAGAACAAT
Found at i:14053315 original size:16 final size:16
Alignment explanation
Indices: 14053290--14053328 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
14053280 TATCTTTCTT
14053290 TGTACATTGAGGGCAA
1 TGTACATTGAGGGCAA
*
14053306 TGTACCTTGAGGGCAA
1 TGTACATTGAGGGCAA
14053322 TGTACAT
1 TGTACAT
14053329 CTTAAGTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (16 bp):
TGTACATTGAGGGCAA
Found at i:14057070 original size:28 final size:29
Alignment explanation
Indices: 14057028--14057141 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
14057018 TACCTGTATC
* * *
14057028 TGGCCTATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
14057056 TGGCCCATTAGGCCCAAACCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
14057085 TGGCCCATTGGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
14057114 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
14057142 CTCATGCTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 25 0.35
29 45 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:14057377 original size:16 final size:16
Alignment explanation
Indices: 14057353--14057396 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
14057343 GTAGCCAAAC
* *
14057353 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
14057369 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
14057385 TTTCGGCATTTC
1 TTTCGGCTTTTC
14057397 AGCTTTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.23, G:0.20, T:0.48
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:14057382 original size:8 final size:8
Alignment explanation
Indices: 14057365--14057396 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
14057355 TCAGCTTTTT
14057365 GGCATTTC
1 GGCATTTC
*
14057373 GGCTTTTC
1 GGCATTTC
14057381 GGCATTTC
1 GGCATTTC
14057389 GGCATTTC
1 GGCATTTC
14057397 AGCTTTTGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.09, C:0.25, G:0.25, T:0.41
Consensus pattern (8 bp):
GGCATTTC
Found at i:14059742 original size:25 final size:25
Alignment explanation
Indices: 14059714--14059792 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
14059704 ACTCGGCCCT
14059714 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
14059739 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
*
14059761 ATCACACATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
14059786 ATCACAT
1 ATCACAT
14059793 CGGCCATTAG
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 6 0.17
23 8 0.23
24 8 0.23
25 13 0.37
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:14059840 original size:49 final size:49
Alignment explanation
Indices: 14059664--14059935 Score: 376
Period size: 49 Copynumber: 5.7 Consensus size: 49
14059654 CCCTTCGGGA
* * * * *
14059664 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14059711 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14059758 CTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14059805 CTTATCACATATATATACACTTTCACCTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14059854 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14059903 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
14059936 GCGTAGAATC
Statistics
Matches: 204, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 91 0.45
49 112 0.55
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14066835 original size:37 final size:37
Alignment explanation
Indices: 14066776--14066958 Score: 321
Period size: 37 Copynumber: 4.9 Consensus size: 37
14066766 AGCTCAGACG
* *
14066776 TAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
14066813 AAATCTCAACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
14066850 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
14066887 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14066924 TAATCTCCACACGTAGTCATCGGGCCTTACCCGGA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
14066959 ATATATTTCC
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:14067162 original size:50 final size:50
Alignment explanation
Indices: 14067108--14067293 Score: 354
Period size: 50 Copynumber: 3.7 Consensus size: 50
14067098 CATCGCCTAC
* *
14067108 ATATTTCACACTAGCCATTCGGCTCTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
14067158 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
14067208 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
14067258 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
14067294 TGCATGTTCA
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 134 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:14067339 original size:47 final size:47
Alignment explanation
Indices: 14067263--14067362 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
14067253 TATATATATT
* * *
14067263 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACAATCA
1 TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
* * * *
14067310 TCACATTGGCCATTCGGCCTTATCTCATATATACACGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
14067357 TCACAT
1 TCACAT
14067363 AAAATCCTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTACCACATATATACACGTTCACAATCA
Found at i:14077819 original size:27 final size:27
Alignment explanation
Indices: 14077788--14077842 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
14077778 GTACATGAAT
*
14077788 TCATTTCAATATT-CATATCCCATTTCA
1 TCATTTC-ATATTCCATATCCCATATCA
*
14077815 TCATTTCATATTCCATTTCCCATATCA
1 TCATTTCATATTCCATATCCCATATCA
14077842 T
1 T
14077843 ATTCGTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (27 bp):
TCATTTCATATTCCATATCCCATATCA
Found at i:14078995 original size:13 final size:12
Alignment explanation
Indices: 14078970--14079003 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
14078960 TTGTGCGTTC
14078970 TTTCTGTTCTTCT
1 TTTCT-TTCTTCT
14078983 TTTCTTTCTTTCT
1 TTTCTTTC-TTCT
14078996 TTTCTTTC
1 TTTCTTTC
14079004 AATTTTGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.15
13 17 0.85
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTCTTTCTTCT
Found at i:14079100 original size:35 final size:35
Alignment explanation
Indices: 14079061--14079129 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
14079051 ATTTATTTGT
* *
14079061 TTTCATTTTAATTCA-TTATTATATAATATATATAA
1 TTTCATTTT-ATTCATTTATTATAAAAAATATATAA
*
14079096 TTTCATTTTATTTATTTATTATAAAAAATATATA
1 TTTCATTTTATTCATTTATTATAAAAAATATATA
14079130 TATTAATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (35 bp):
TTTCATTTTATTCATTTATTATAAAAAATATATAA
Found at i:14080566 original size:43 final size:43
Alignment explanation
Indices: 14080505--14080592 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
14080495 ATCCATCGTT
14080505 ATGCGTTCCCATTTCCACTCAGGAATTGAAATAGGCTGAAGTA
1 ATGCGTTCCCATTTCCACTCAGGAATTGAAATAGGCTGAAGTA
14080548 ATGCGTTCCCATTTCCACTCAGGAATTGAAATAGGCTGAAGTA
1 ATGCGTTCCCATTTCCACTCAGGAATTGAAATAGGCTGAAGTA
14080591 AT
1 AT
14080593 CCTGTGGAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
ATGCGTTCCCATTTCCACTCAGGAATTGAAATAGGCTGAAGTA
Found at i:14088767 original size:22 final size:21
Alignment explanation
Indices: 14088737--14088802 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
14088727 TACAAATTAA
14088737 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14088759 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
14088780 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14088799 ATCT
1 ATCT
14088803 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14088789 original size:19 final size:19
Alignment explanation
Indices: 14088754--14088815 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
14088744 AGATTACAAG
14088754 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
14088775 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14088794 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14088813 ATC
1 ATC
14088816 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14090053 original size:18 final size:18
Alignment explanation
Indices: 14090032--14090071 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14090022 TTTTGATCTT
*
14090032 TTTTTTTGTTTCTTTTCA
1 TTTTCTTGTTTCTTTTCA
*
14090050 TTTTCTTGTTTCTTTTGA
1 TTTTCTTGTTTCTTTTCA
14090068 TTTT
1 TTTT
14090072 ATTATTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.10, G:0.07, T:0.78
Consensus pattern (18 bp):
TTTTCTTGTTTCTTTTCA
Found at i:14090986 original size:3 final size:3
Alignment explanation
Indices: 14090978--14091058 Score: 94
Period size: 3 Copynumber: 26.3 Consensus size: 3
14090968 ATGTTATACT
14090978 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA TTA TTTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA -TTA
* *
14091026 TTTA TTA TTA TTA TTG TTA -TA CT- TTA TTA TTA T
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14091059 ACTCTCATTT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
2 3 0.04
3 54 0.76
4 14 0.20
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14091017 original size:34 final size:36
Alignment explanation
Indices: 14090979--14091058 Score: 107
Period size: 34 Copynumber: 2.3 Consensus size: 36
14090969 TGTTATACTT
14090979 TATTATTATTATTA-TTATTATTATTATTATTATA-
1 TATTATTATTATTATTTATTATTATTATTATTATAC
*
14091013 TATTA-T-TTATTTATTTATTATTATTATTGTTATAC
1 TATTATTATTA-TTATTTATTATTATTATTATTATAC
14091048 T-TTATTATTAT
1 TATTATTATTAT
14091059 ACTCTCATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
32 3 0.08
33 4 0.10
34 27 0.68
35 3 0.08
36 3 0.08
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (36 bp):
TATTATTATTATTATTTATTATTATTATTATTATAC
Found at i:14096076 original size:27 final size:27
Alignment explanation
Indices: 14096038--14096095 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
14096028 AATAATAAAT
*
14096038 AAAAAGGAAAAA-GAAAGAAGAAGAAGA
1 AAAAAGGAAAAAGGAAA-AAGAAAAAGA
* *
14096065 AAAAAGGGAAAAGGGAAAAGAAAAAGA
1 AAAAAGGAAAAAGGAAAAAGAAAAAGA
14096092 AAAA
1 AAAA
14096096 GGAGAGGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (27 bp):
AAAAAGGAAAAAGGAAAAAGAAAAAGA
Found at i:14097109 original size:96 final size:93
Alignment explanation
Indices: 14096987--14097481 Score: 414
Period size: 96 Copynumber: 5.4 Consensus size: 93
14096977 CATGGCGAAC
* * * * * *
14096987 CTTATCTCCCTAAAGTTGTAGTGGAGCAAACTGAAGATAGTGGATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T--TAGATCTTATCTCCCTGAAGTTGCA
* *
14097052 ATGGAACAGATTAAAGCTACAAATTACAAAT
63 GTGGAGCAGATTAAAGCTACAAATTACAAAT
* *
14097083 CTTATCTCCCTGAAGTTGCATTGGAGCAGATTGAAGTTAGATCTTATCTCCCTAAAGTTGCAGTG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCCCTGAAGTTGCAGTG
* * * * *
14097148 GAGTAGA-T-CAG--AGATAGT--AAAT
66 GAGCAGATTAAAGCTACAAATTACAAAT
* * * * * * *
14097170 CCTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-TAGATCTTATCTCCCTGAAGTTGCAG
* * * *
14097235 TGGAGCAGGTTAAAG-T---TATAACAAGT
64 TGGAGCAGATTAAAGCTACAAATTACAAAT
* * * * * *
14097261 CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGACGAATCTTATTTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTA-G-ATCTTATCTCCCTGAAGTTGCA
*
14097326 GTGGAACAGATTAAAGCTACAAATTACAAAT
63 GTGGAGCAGATTAAAGCTACAAATTACAAAT
* *
14097357 CTTATCTCCCTGACA-TTTCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTGAAGTTGCAGT
1 CTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCCCTGAAGTTGCAGT
* * *
14097421 AGAGCAAATTAAAGCT----A-T--AAAC
65 GGAGCAGATTAAAGCTACAAATTACAAAT
* * *
14097443 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
14097482 CAACAAGTCT
Statistics
Matches: 322, Mismatches: 62, Indels: 40
0.76 0.15 0.09
Matches are distributed among these distances:
85 1 0.00
86 36 0.11
87 35 0.11
88 2 0.01
89 38 0.12
90 2 0.01
91 37 0.11
92 33 0.10
93 64 0.20
94 1 0.00
95 3 0.01
96 69 0.21
97 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (93 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCCCTGAAGTTGCAGTG
GAGCAGATTAAAGCTACAAATTACAAAT
Found at i:14097113 original size:51 final size:49
Alignment explanation
Indices: 14097030--14097830 Score: 268
Period size: 44 Copynumber: 17.6 Consensus size: 49
14097020 AAGATAGTGG
* * *
14097030 ATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAATTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TA-AAATTACAA
* * *
14097081 ATCTTATCTCCCTGAAGTTGCATTGGAGCAGATT---G--AAGTT--AG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * * * * *
14097123 ATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATCAGAG--ATAGT--AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * *
14097168 ATCCTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCT---A-T--AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TAAAATTACAA
* * * * *
14097212 ACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGT--TATAACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * * * * * *
14097259 GTCTTATCTCCCTGAAGTTACAGTGGAGTAGACT---G-AAGATGACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * *
14097304 ATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAATTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TA-AAATTACAA
* * *
14097355 ATCTTATCTCCCTGACA-TTTCAGTGGAGCAGATT---G--AAGTT--AG
1 ATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * *
14097397 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCT---A-T--AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TAAAATTACAA
* * * * * * *
14097441 ACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTTACA--ACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* ** * * ** ** *
14097488 GTCTTATCTCCAAGAATTTGTAGTGGAGCAGATT---G-AAGGTGGCGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * * *
14097533 ATCTTATTTCCTTGAAGTTGCAGTGGAACTGATTAAAGCTACAAATTACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TA-AAATTACAA
* * * *
14097584 ATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATT---G--AAGTT--AG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * * * * *
14097626 ATCTTATCTCTCTTAAGTTGCAATAGAGCAGATTAAAG-----CTGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* * * *
14097670 ATCTTATCTCCATGAAGTTGTAGTGAAGCAGATTAAAG-----TT--AG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* *
14097712 ATCTTAT-TCCTCTAAAGTTGCAGTAGAGCAGATTAAAGCT---A-T--AA
1 ATCTTATCTCC-CTGAAGTTGCAGTGGAGCAGATTAAAG-TAAAATTACAA
* ** * * * *
14097756 ACCTTATCTCTTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACA--ACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
* *
14097803 GTCTTATCTTCCTGAAGTTGCAGTGGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAG
14097831 TAGACTGAAG
Statistics
Matches: 567, Mismatches: 131, Indels: 108
0.70 0.16 0.13
Matches are distributed among these distances:
41 4 0.01
42 121 0.21
43 4 0.01
44 145 0.26
45 102 0.18
46 2 0.00
47 83 0.15
48 5 0.01
50 2 0.00
51 98 0.17
52 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (49 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAAAATTACAA
Found at i:14097188 original size:87 final size:89
Alignment explanation
Indices: 14097079--14097239 Score: 245
Period size: 87 Copynumber: 1.8 Consensus size: 89
14097069 TACAAATTAC
* * * * * *
14097079 AAATCTTATCTCCCTGAAGTTGCATTGGAGCAGATTGAAG-T-TAGATCTTATCTCCCTAAAGTT
1 AAATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTT
14097142 GCAGTGGAGTAGATCAGAGATAGT
66 GCAGTGGAGTAGATCAGAGATAGT
*
14097166 AAATCCTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTT
1 AAATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTT
14097231 GCAGTGGAG
66 GCAGTGGAG
14097240 CAGGTTAAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 35 0.54
88 1 0.02
89 29 0.45
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (89 bp):
AAATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTT
GCAGTGGAGTAGATCAGAGATAGT
Found at i:14097419 original size:229 final size:229
Alignment explanation
Indices: 14097123--14097710 Score: 820
Period size: 229 Copynumber: 2.6 Consensus size: 229
14097113 TTGAAGTTAG
* * * *
14097123 ATCTTATCTCCCTAAAGTTGCAGTGGAGTAGA-TCAGAGATAGTAAATCCTATCTCTCTGAAGTT
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA-AG-T--TAGATCTTATCTCTCTGAAGTT
* *
14097187 GCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGTT
62 GCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTT
* ** *
14097252 ATAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGACGAATCTTATTTCCCT
127 ACAACAAGTCTTATCTCCAAGAAGTTACAGTGGAGCAGACTGAAGATGACGAATCTTATTTCCCT
14097317 GAAGTTACAGTGGAACAGATTAAAGCTACAAATTACAA
192 GAAGTTACAGTGGAACAGATTAAAGCTACAAATTACAA
* *
14097355 ATCTTATCTCCCTGACA-TTTCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTGAAGTTGCA
1 ATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTGAAGTTGCA
* * *
14097419 GTAGAGCAAATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTTACA
65 GTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTTACA
* ** * * * *
14097484 ACAAGTCTTATCTCCAAGAATTTGTAGTGGAGCAGATTGAAGGTGGCGAATCTTATTTCCTTGAA
130 ACAAGTCTTATCTCCAAGAAGTTACAGTGGAGCAGACTGAAGATGACGAATCTTATTTCCCTGAA
* *
14097549 GTTGCAGTGGAACTGATTAAAGCTACAAATTACAA
195 GTTACAGTGGAACAGATTAAAGCTACAAATTACAA
* * *
14097584 ATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGTTAGATCTTATCTCTCTTAAGTTGCAA
1 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTGAAGTTGCAG
** * * * *
14097649 TAGAGCAGATTAAAGCTGCAAATCTTATCTCCATGAAGTTGTAGTGAAGCAGATTAAAGTTA
66 TAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTTA
14097711 GATCTTATTC
Statistics
Matches: 315, Mismatches: 38, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
228 2 0.01
229 280 0.89
231 1 0.00
232 28 0.09
233 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (229 bp):
ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTGAAGTTGCAG
TAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGTTACAA
CAAGTCTTATCTCCAAGAAGTTACAGTGGAGCAGACTGAAGATGACGAATCTTATTTCCCTGAAG
TTACAGTGGAACAGATTAAAGCTACAAATTACAA
Found at i:14097551 original size:274 final size:273
Alignment explanation
Indices: 14096987--14097854 Score: 700
Period size: 274 Copynumber: 3.2 Consensus size: 273
14096977 CATGGCGAAC
* ** * * * * *
14096987 CTTATCTCCCTAAAGTTGTAGTGGAGCAAACTGAAGAT-AGTGGATCTTATTTCCCTGAAGTTGC
1 CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGA-CGAATCTTATTTCCCTGAAGTTAC
*
14097051 AATGGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCATTGGAGCAGATTG
65 AATGGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG
* * * * *
14097116 AAGTTAGATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATCAGAGATAGTAAATCCTATCTCTCT
130 AAGTTAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAAATCAAAGATAGTAAATCCTATCTCCCT
* * *
14097181 GAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTT
195 GAAGTTGCAGTAGAGCAGATTAAAGCTAAAAACCTTATCTCCCAAAAGTTGCAGTGGAGCAGATT
14097246 AAAGTTATAACAAGT
260 AAAG-TATAACAAGT
14097261 CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGACGAATCTTATTTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGACGAATCTTATTTCCCTGAAGTTACA
* *
14097326 GTGGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTGACA-TTTCAGTGGAGCAGATTG
66 ATGGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTG
* * * *
14097390 AAGTTAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTA-TAAA-CCTTATCTCCC
130 AAGTTAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAAATCAAAGATAGTAAATCC-TATCTCCC
* * * * * * * * *
14097453 TGAAGTTGTAGTGGAGTAGGTTGAAGTTACAACAAGTCTTATCT-CCAAGAATTTGTAGTGGAGC
194 TGAAGTTGCAGTAGAGCAGATTAAAGCTA-AA-AA-CCTTATCTCCCAA-AAGTTGCAGTGGAGC
* * **
14097517 AGATTGAAG-GTGGCGAA-T
255 AGATTAAAGTATAAC-AAGT
* * * * * * * * *
14097535 CTTATTTCCTTGAAGTTGCAGTGGAACTGATTAAAGCT-ACAAATTACAAATCTTATCTCCCTAA
1 CTTATCTCCCTGAAGTTACAGTGG-A--G--TAGA-CTGA-AGATGACGAATCTTATTTCCCTGA
* * ** * * * * * *
14097599 AGTTGCAGTGGAGTAGATT---G----AAGTT--AGATCTTATCTCTCTTAAGTTGCAATAGAGC
59 AGTTACAATGGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * * * * * * *
14097655 AGATTAAAGCTGCAAATCTTATCTCCATGAAGTTGTAGT-GAAGCAGATTAAAG-T--TAGATCT
124 AGATTGAAG-T-TAGATCTTATCTCCCTAAAGTTGCAGTAG-AGCAAATCAAAGATAGTAAATCC
* * ****
14097716 TAT-TCCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCTTTGAAGTTGCAGT
186 TATCTCC-CTGAAGTTGCAGTAGAGCAGATTAAAGCTAAAAACCTTATCTCCCAAAAGTTGCAGT
* * *
14097780 GGAGCAGGTTGAAGTTACAACAAGT
250 GGAGCAGATTAAAG-TATAACAAGT
* * *
14097805 CTTATCTTCCTGAAGTTGCAGTGGAGTAGACTGAAGATGGCGAATCTTAT
1 CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGACGAATCTTAT
14097855 CTCTTTAAAG
Statistics
Matches: 476, Mismatches: 92, Indels: 62
0.76 0.15 0.10
Matches are distributed among these distances:
264 14 0.03
265 4 0.01
267 1 0.00
268 28 0.06
269 5 0.01
270 28 0.06
271 60 0.13
272 6 0.01
273 71 0.15
274 179 0.38
275 10 0.02
276 27 0.06
277 2 0.00
279 4 0.01
280 37 0.08
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (273 bp):
CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATGACGAATCTTATTTCCCTGAAGTTACA
ATGGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA
AGTTAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAAATCAAAGATAGTAAATCCTATCTCCCTG
AAGTTGCAGTAGAGCAGATTAAAGCTAAAAACCTTATCTCCCAAAAGTTGCAGTGGAGCAGATTA
AAGTATAACAAGT
Found at i:14097730 original size:86 final size:86
Alignment explanation
Indices: 14097579--14097796 Score: 294
Period size: 86 Copynumber: 2.5 Consensus size: 86
14097569 AGCTACAAAT
* * * *
14097579 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGTTAGATCTTATCTCTCTTAAGT
1 TACAAATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTAAAGT
14097644 TGCAATAGAGCAGATTAAAGC
66 TGCAATAGAGCAGATTAAAGC
* * * *
14097665 TGCAAATCTTATCTCCATGAAGTTGTAGTGAAGCAGATTAAAGTTAGATCTTAT-TCCTCTAAAG
1 TACAAATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCT-CTCTAAAG
*
14097729 TTGCAGTAGAGCAGATTAAAGC
65 TTGCAATAGAGCAGATTAAAGC
* * ** *
14097751 TATAAACCTTATCTCTTTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
1 TACAAATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGTTA
14097797 CAACAAGTCT
Statistics
Matches: 113, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
85 1 0.01
86 112 0.99
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (86 bp):
TACAAATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTATCTCTCTAAAGT
TGCAATAGAGCAGATTAAAGC
Found at i:14099464 original size:3 final size:3
Alignment explanation
Indices: 14099456--14099516 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
14099446 ATGTTATACT
14099456 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14099504 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
14099517 ACTTTATTAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14101243 original size:40 final size:40
Alignment explanation
Indices: 14101199--14101391 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
14101189 TTATAGCAAT
* *
14101199 TCGCACAAATGCCTTCGGAAATTAACCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* *
14101239 TCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
*
14101279 TCGCACAAATGCCTTCGGGACTTAACCCGCATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* *
14101319 TTGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
14101359 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGAT
14101392 ACCATTCGAA
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 110 0.79
41 29 0.21
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
Found at i:14101291 original size:80 final size:80
Alignment explanation
Indices: 14101132--14101391 Score: 283
Period size: 80 Copynumber: 3.3 Consensus size: 80
14101122 AAATCACGTA
* * ** ** * * *
14101132 CCTTCGGAATTTAA-CCGGATATAGCGACTCGTTCGATTGTCTTCGGGAC-AAGCCCGG-TTATA
1 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATT-TA
* *
14101194 GCAATTCGCACAAATG
65 GTAACTCGCACAAATG
*
14101210 CCTTCGGAAATTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAG
1 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAG
14101275 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * * * *
14101290 CCTTCGGGACTTAACCCGCATTTAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
1 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAG
* * *
14101355 TCACTTAGCACAAAAG
66 TAAC-TCGCACAAATG
* *
14101371 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGAACTTAACCCGGAT
14101392 ACCATTCGAA
Statistics
Matches: 156, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
78 13 0.08
79 28 0.18
80 85 0.54
81 30 0.19
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATTTAG
TAACTCGCACAAATG
Found at i:14109300 original size:40 final size:40
Alignment explanation
Indices: 14109256--14109460 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
14109246 GCTCGATTGT
* * *
14109256 CTTCGGGACATAGCCCGG-TTATAGCAATTCGCACAAATGC
1 CTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGC
*
14109296 CTTC-GGAAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCCGGATTTAGTAACTCGCACAAATGC
* *
14109336 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
* *
14109376 CTTCGGGACTTAACCCGCATTTAGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
* * * * *
14109416 CTTCGGGACTTAACCCGAATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAACCCGGATTTAGTAAC-TCGCACAAATGC
14109457 CTTC
1 CTTC
14109461 AGGAATTAGC
Statistics
Matches: 148, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 4 0.03
40 125 0.84
41 19 0.13
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:14109350 original size:80 final size:79
Alignment explanation
Indices: 14109216--14109476 Score: 283
Period size: 80 Copynumber: 3.3 Consensus size: 79
14109206 GAATCACGTA
* * ** * * * * *
14109216 CCTTCGGAATTTAA-CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGAAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAG
14109280 CAATTCGCACAAATG
65 CAATTCGCACAAATG
14109295 CCTTCGGAAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
1 CCTTCGGAAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAG
* *
14109360 TAACTCGCACAAATG
65 CAATTCGCACAAATG
* * * * *
14109375 CCTTCGGGACTTAACCCGCATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAG
1 CCTTCGGAAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAG
* * *
14109440 TCACTTAGCACAAAAG
65 -CAATTCGCACAAATG
*
14109456 CCTTCAGG-AATTAGCCCGGAT
1 CCTTC-GGAAATTAACCCGGAT
14109477 ACCATTCGAA
Statistics
Matches: 153, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
79 13 0.08
80 111 0.73
81 27 0.18
82 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
CCTTCGGAAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGC
AATTCGCACAAATG
Found at i:14116515 original size:21 final size:21
Alignment explanation
Indices: 14116489--14116584 Score: 165
Period size: 21 Copynumber: 4.5 Consensus size: 21
14116479 CCTGATCAGT
14116489 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
14116510 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
*
14116531 ATACGACACACGAGGTGCCTA
1 ATACGACACACGAGGTGCCTG
14116552 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
14116573 AAATACGACACA
1 --ATACGACACA
14116585 TAAAGTGCCT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
21 61 0.86
23 10 0.14
ACGTcount: A:0.33, C:0.28, G:0.25, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:14116828 original size:25 final size:25
Alignment explanation
Indices: 14116795--14116845 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
14116785 ATTCAATTCA
14116795 ATTCTCATTCAACTCAAATATCAAT
1 ATTCTCATTCAACTCAAATATCAAT
14116820 ATTCTCATTCAACTCAAATATCAAT
1 ATTCTCATTCAACTCAAATATCAAT
14116845 A
1 A
14116846 CTTACCTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (25 bp):
ATTCTCATTCAACTCAAATATCAAT
Found at i:14118069 original size:16 final size:17
Alignment explanation
Indices: 14118034--14118069 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
14118024 CCTAATTCTC
14118034 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
14118050 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
14118065 CCTTC
1 CCTTC
14118070 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:14133579 original size:40 final size:40
Alignment explanation
Indices: 14133505--14133650 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
14133495 CCGCACCAAG
* * * * * *
14133505 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
14133545 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
14133585 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
14133625 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
14133651 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:14133665 original size:40 final size:40
Alignment explanation
Indices: 14133537--14133688 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
14133527 ATCACGATTT
* * * * *
14133537 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
14133577 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
14133617 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
14133657 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
14133689 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:14141675 original size:40 final size:40
Alignment explanation
Indices: 14141601--14141746 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
14141591 CCGCACCAAG
* * * * * *
14141601 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
14141641 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
14141681 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
14141721 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
14141747 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:14141761 original size:40 final size:40
Alignment explanation
Indices: 14141633--14141784 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
14141623 ATCACGATTT
* * * * *
14141633 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
14141673 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
14141713 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
14141753 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
14141785 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:14143786 original size:35 final size:35
Alignment explanation
Indices: 14143727--14143798 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
14143717 GTCTAGGATC
*
14143727 GCATATCTTTAAAGATCCCCTTCCATA-TTTGCCAA
1 GCATATCTTTAAAGATCACCTTCCATAGTTT-CCAA
* * *
14143762 GCATATCTTTGAAGATTACTTTCCATAGTTTCCAA
1 GCATATCTTTAAAGATCACCTTCCATAGTTTCCAA
14143797 GC
1 GC
14143799 TCCGGAGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 29 0.91
36 3 0.09
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (35 bp):
GCATATCTTTAAAGATCACCTTCCATAGTTTCCAA
Found at i:14148096 original size:25 final size:25
Alignment explanation
Indices: 14148087--14148161 Score: 109
Period size: 25 Copynumber: 3.0 Consensus size: 25
14148077 GAATTGGTAT
14148087 GCTCTCACGAGCTGAGAATCAGTAA
1 GCTCTCACGAGCTGAGAATCAGTAA
14148112 GCTCTCACGAGCTGTA-AATCAGTAA
1 GCTCTCACGAGCTG-AGAATCAGTAA
*
14148137 GCTCAT-ACGAGCTGAGAATCGGTAA
1 GCTC-TCACGAGCTGAGAATCAGTAA
14148162 CCCTAATGAC
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
24 1 0.02
25 43 0.93
26 2 0.04
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (25 bp):
GCTCTCACGAGCTGAGAATCAGTAA
Found at i:14148584 original size:19 final size:20
Alignment explanation
Indices: 14148554--14148591 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
14148544 TAAAATTGGA
14148554 AATTTACACAATTTCACCAC
1 AATTTACACAATTTCACCAC
14148574 AATTT-CACAATTTCACCA
1 AATTTACACAATTTCACCA
14148592 TGTAATATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (20 bp):
AATTTACACAATTTCACCAC
Found at i:14156918 original size:29 final size:31
Alignment explanation
Indices: 14156870--14156927 Score: 102
Period size: 29 Copynumber: 1.9 Consensus size: 31
14156860 AGATTACAAA
14156870 ATCATATCTTCAAGATTGCATATCATATCAT
1 ATCATATCTTCAAGATTGCATATCATATCAT
14156901 ATCATATC-T-AAGATTGCATATCATATC
1 ATCATATCTTCAAGATTGCATATCATATC
14156928 TAAGACTGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 18 0.67
30 1 0.04
31 8 0.30
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (31 bp):
ATCATATCTTCAAGATTGCATATCATATCAT
Found at i:14156922 original size:19 final size:19
Alignment explanation
Indices: 14156898--14156941 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
14156888 CATATCATAT
*
14156898 CATATCATATCTAAGATTG
1 CATATCATATCTAAGACTG
14156917 CATATCATATCTAAGACTG
1 CATATCATATCTAAGACTG
14156936 CATATC
1 CATATC
14156942 CTTAAAGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (19 bp):
CATATCATATCTAAGACTG
Found at i:14161818 original size:6 final size:6
Alignment explanation
Indices: 14161807--14161835 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14161797 CATAGTAAAA
14161807 TATATT TATATT TATATT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATAT
14161836 AAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TATATT
Found at i:14161841 original size:18 final size:18
Alignment explanation
Indices: 14161807--14161841 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14161797 CATAGTAAAA
**
14161807 TATATTTATATTTATATT
1 TATATTTATATAAATATT
14161825 TATATTTATATAAATAT
1 TATATTTATATAAATAT
14161842 CATAATCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTTATATAAATATT
Found at i:14162069 original size:36 final size:36
Alignment explanation
Indices: 14162022--14162093 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
14162012 TTAATATAGA
14162022 GACTGATTACATATTTACTTTTATTGATATTATTCT
1 GACTGATTACATATTTACTTTTATTGATATTATTCT
14162058 GACTGATTACATATTTACTTTTATTGATATTATTCT
1 GACTGATTACATATTTACTTTTATTGATATTATTCT
14162094 TTAAATATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (36 bp):
GACTGATTACATATTTACTTTTATTGATATTATTCT
Found at i:14162435 original size:9 final size:9
Alignment explanation
Indices: 14162421--14162579 Score: 228
Period size: 9 Copynumber: 17.7 Consensus size: 9
14162411 TAAAACCTAA
14162421 ACATAACTT
1 ACATAACTT
14162430 ACATAACTT
1 ACATAACTT
14162439 ACATAACTT
1 ACATAACTT
* *
14162448 TCATAGCTT
1 ACATAACTT
*
14162457 ATATAACTT
1 ACATAACTT
*
14162466 ATATAACTT
1 ACATAACTT
*
14162475 ACATAAATT
1 ACATAACTT
*
14162484 ACATAGCTT
1 ACATAACTT
14162493 ACATAACTT
1 ACATAACTT
14162502 ACATAACTT
1 ACATAACTT
* *
14162511 ATAGAACTT
1 ACATAACTT
14162520 ACATAACTT
1 ACATAACTT
*
14162529 ACATAGCTT
1 ACATAACTT
14162538 ACATAACTT
1 ACATAACTT
14162547 ACATAACTT
1 ACATAACTT
*
14162556 ACATAGCTT
1 ACATAACTT
14162565 ACATAACTT
1 ACATAACTT
14162574 ACATAA
1 ACATAA
14162580 ATATATATCA
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 132 1.00
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (9 bp):
ACATAACTT
Found at i:14162462 original size:27 final size:27
Alignment explanation
Indices: 14162421--14162606 Score: 228
Period size: 27 Copynumber: 6.7 Consensus size: 27
14162411 TAAAACCTAA
14162421 ACATAACTTACATAACTTACATAACTT
1 ACATAACTTACATAACTTACATAACTT
* * * *
14162448 TCATAGCTTATATAACTTATATAACTT
1 ACATAACTTACATAACTTACATAACTT
* *
14162475 ACATAAATTACATAGCTTACATAACTT
1 ACATAACTTACATAACTTACATAACTT
* *
14162502 ACATAACTTATAGAACTTACATAACTT
1 ACATAACTTACATAACTTACATAACTT
*
14162529 ACATAGCTTACATAACTTACATAACTT
1 ACATAACTTACATAACTTACATAACTT
* *
14162556 ACATAGCTTACATAACTTACATAAATATAT
1 ACATAACTTACATAACTTACAT-AA-CT-T
*
14162586 ATCATAACTTATATAACTTAC
1 A-CATAACTTACATAACTTAC
14162607 GTAATACATA
Statistics
Matches: 135, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
27 113 0.84
28 2 0.01
29 1 0.01
30 2 0.01
31 17 0.13
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (27 bp):
ACATAACTTACATAACTTACATAACTT
Found at i:14165956 original size:14 final size:14
Alignment explanation
Indices: 14165930--14165972 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
14165920 TTTTAAATAT
14165930 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
14165943 TTATAATGGTTTAA
1 TTATAATGGTTTAA
*
14165957 TTATATTGGTTTAA
1 TTATAATGGTTTAA
14165971 TT
1 TT
14165973 CGTCGTTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 7 0.25
14 21 0.75
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.56
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:14166895 original size:43 final size:42
Alignment explanation
Indices: 14166776--14166959 Score: 147
Period size: 43 Copynumber: 4.3 Consensus size: 42
14166766 GAACATGACT
* *** *
14166776 TTTAGTGGCGTTTTTGT-AAAAGCATTGCTAAAGCTCATGTTC
1 TTTAGCGGCG-TTTTGTCAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
14166818 TTTAACAGCGTTTTTGTTAAAAGCGTCGCTAAAGGTCATGTTC
1 TTTAGCGGCG-TTTTGTCAAAAGCGCCGCTAAAGGTCATGTTC
* * **
14166861 TTTAGCGGAGTTTGTGTGAAAAGCGCCGCTAAAGGTCACATTC
1 TTTAGCGGCGTTT-TGTCAAAAGCGCCGCTAAAGGTCATGTTC
* ** * *
14166904 TTTAGTGGCGCTTTT-TCAAAAAAGCCGCTAAAAGTCGTGTTC
1 TTTAGCGGCG-TTTTGTCAAAAGCGCCGCTAAAGGTCATGTTC
*
14166946 TTTAGCGGCATTTT
1 TTTAGCGGCGTTTT
14166960 TTTACATAAA
Statistics
Matches: 115, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
41 4 0.03
42 45 0.39
43 63 0.55
44 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (42 bp):
TTTAGCGGCGTTTTGTCAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:14169444 original size:22 final size:22
Alignment explanation
Indices: 14169418--14169465 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
14169408 AAAAAACTAC
*
14169418 TTTTTCTACTATTTTCTTGTTT
1 TTTTTCTACTATTTTCTTGTTA
*
14169440 TTTTTTTACTATTTTCTTGTTA
1 TTTTTCTACTATTTTCTTGTTA
14169462 TTTT
1 TTTT
14169466 CTTATTGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.10, C:0.10, G:0.04, T:0.75
Consensus pattern (22 bp):
TTTTTCTACTATTTTCTTGTTA
Found at i:14174119 original size:20 final size:20
Alignment explanation
Indices: 14174096--14174136 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
14174086 ACATAAATAT
14174096 TTTTAAAATATAATA-AAAAA
1 TTTTAAAA-ATAATATAAAAA
*
14174116 TTTTAAAAATCATATAAAAA
1 TTTTAAAAATAATATAAAAA
14174136 T
1 T
14174137 AAAAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TTTTAAAAATAATATAAAAA
Found at i:14174124 original size:21 final size:21
Alignment explanation
Indices: 14174094--14174135 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14174084 ATACATAAAT
*
14174094 ATTTTTAAAAT-ATAATAAAAA
1 ATTTTAAAAATCAT-ATAAAAA
14174115 ATTTTAAAAATCATATAAAAA
1 ATTTTAAAAATCATATAAAAA
14174136 TAAAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
ATTTTAAAAATCATATAAAAA
Found at i:14174204 original size:52 final size:50
Alignment explanation
Indices: 14174060--14174206 Score: 165
Period size: 52 Copynumber: 2.9 Consensus size: 50
14174050 ATCCTAAACC
** *
14174060 TAAAAAATTCAAAAAATATATAAAATACATAAATATTTTT-AAAATATAA
1 TAAAAAATTTTAAAAATATATAAAATACATAAATATTTTTAAAAAAATAA
* *
14174109 TAAAAAATTTTAAAAATCATATAAAAATA-AAAAATATTATTAAAAAAATAAA
1 TAAAAAATTTTAAAAAT-ATAT-AAAATACATAAATATTTTTAAAAAAAT-AA
* *
14174161 TTATAAACTTTT-AAAATATATAAAACTACATAAATATTTTTAAAAA
1 -TAAAAAATTTTAAAAATATATAAAA-TACATAAATATTTTTAAAAA
14174207 TATTATAATA
Statistics
Matches: 82, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
49 15 0.18
50 18 0.22
51 18 0.22
52 22 0.27
53 9 0.11
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (50 bp):
TAAAAAATTTTAAAAATATATAAAATACATAAATATTTTTAAAAAAATAA
Found at i:14174535 original size:67 final size:67
Alignment explanation
Indices: 14174425--14174561 Score: 231
Period size: 67 Copynumber: 2.0 Consensus size: 67
14174415 TTGACCATTG
*
14174425 TTATGACACCATTTATTTTGTCTACACTTCTGTTGATGATTCC-TTCCCCCATCCCATTCTCTTA
1 TTATGACACCATTTATTTTGTCTACACTTCTGTTGATGATTCCTTTCCCCCATCCC-CTCTCTTA
14174489 GGA
65 GGA
* *
14174492 TTATGACACCATTTATTTTGTCTACACTTCTGTTGATGGTTCCTTTCCCCCTTCCCCTCTCTTAG
1 TTATGACACCATTTATTTTGTCTACACTTCTGTTGATGATTCCTTTCCCCCATCCCCTCTCTTAG
14174557 GA
66 GA
14174559 TTA
1 TTA
14174562 CTCGTATTTG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 55 0.83
68 11 0.17
ACGTcount: A:0.18, C:0.28, G:0.11, T:0.43
Consensus pattern (67 bp):
TTATGACACCATTTATTTTGTCTACACTTCTGTTGATGATTCCTTTCCCCCATCCCCTCTCTTAG
GA
Found at i:14175446 original size:24 final size:24
Alignment explanation
Indices: 14175414--14175461 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14175404 TCTGAGGGTT
14175414 TTGCATCTTTAAAATTGAAATCAA
1 TTGCATCTTTAAAATTGAAATCAA
14175438 TTGCATCTTTAAAATTGAAATCAA
1 TTGCATCTTTAAAATTGAAATCAA
14175462 CTTCATGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
TTGCATCTTTAAAATTGAAATCAA
Done.