Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 55 of 410
Found at i:14494016 original size:31 final size:30
Alignment explanation
Indices: 14493981--14494038 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
14493971 TCCCTTTTCT
*
14493981 TTTTCTTTCCCT-TTCTTTCTTTCCTATTCCG
1 TTTTCATTCCCTGTTCTTT-TTT-CTATTCCG
*
14494012 TTTTCATTCTCTGTTCTTTTTTCTATT
1 TTTTCATTCCCTGTTCTTTTTTCTATT
14494039 TTGTTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 13 0.54
32 6 0.25
ACGTcount: A:0.05, C:0.26, G:0.03, T:0.66
Consensus pattern (30 bp):
TTTTCATTCCCTGTTCTTTTTTCTATTCCG
Found at i:14500895 original size:23 final size:23
Alignment explanation
Indices: 14500868--14500914 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
14500858 TAAAGTATAA
14500868 TGGTCTAATTACCATTTAAAGAC
1 TGGTCTAATTACCATTTAAAGAC
*
14500891 TGGTCTAATTACCATTTAAGGAC
1 TGGTCTAATTACCATTTAAAGAC
14500914 T
1 T
14500915 TTCAATTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (23 bp):
TGGTCTAATTACCATTTAAAGAC
Found at i:14507243 original size:16 final size:17
Alignment explanation
Indices: 14507213--14507246 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
14507203 TAAACAAACC
14507213 TTAAAATACATATAACA
1 TTAAAATACATATAACA
14507230 TTAAAATA-ATATAACA
1 TTAAAATACATATAACA
14507246 T
1 T
14507247 GATTAAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (17 bp):
TTAAAATACATATAACA
Found at i:14524298 original size:40 final size:40
Alignment explanation
Indices: 14524239--14524380 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
14524229 AAATTGAATG
* * *
14524239 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
14524279 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
14524319 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
14524359 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
14524381 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:14524381 original size:40 final size:39
Alignment explanation
Indices: 14524278--14524406 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
14524268 TGCTGGAAAT
* * *
14524278 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
14524318 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
14524358 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
14524398 TATATCCGG
1 TATATCCGG
14524407 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:14532321 original size:40 final size:40
Alignment explanation
Indices: 14532262--14532403 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
14532252 AAATTGAATG
* * *
14532262 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
14532302 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
14532342 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
14532382 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
14532404 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:14532404 original size:40 final size:39
Alignment explanation
Indices: 14532301--14532429 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
14532291 TGCTGGAAAT
* * *
14532301 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
14532341 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
14532381 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
14532421 TATATCCGG
1 TATATCCGG
14532430 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:14533439 original size:23 final size:23
Alignment explanation
Indices: 14533409--14533455 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
14533399 TACCTTATAT
14533409 TACAGATTCCATTTTGAGTCTAG
1 TACAGATTCCATTTTGAGTCTAG
14533432 TACAGATTCCATTTTGAGTCTAG
1 TACAGATTCCATTTTGAGTCTAG
14533455 T
1 T
14533456 TTCATTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (23 bp):
TACAGATTCCATTTTGAGTCTAG
Found at i:14535279 original size:19 final size:19
Alignment explanation
Indices: 14535234--14535270 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
14535224 TCCAAATTCC
14535234 CACTATTTTACATACTTAA
1 CACTATTTTACATACTTAA
14535253 CATCTATTTTACA-ACTTA
1 CA-CTATTTTACATACTTA
14535271 TGCACTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (19 bp):
CACTATTTTACATACTTAA
Found at i:14542220 original size:45 final size:45
Alignment explanation
Indices: 14542162--14542278 Score: 121
Period size: 46 Copynumber: 2.6 Consensus size: 45
14542152 GTGCCGATTC
* * * *
14542162 CATGTCCCGGACATGGTCTTATACTGAC-ACATCTTGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTACATCTCG-AGGCCGAAG
* * *
14542207 CATGTCCCAGACATGTATTACACTGGCTTACGTCTCGAGGCCGAAG
1 CATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAGGCCGAAG
14542253 CATGTCCCAGACATAGTCTTACACTG
1 CATGTCCCAGACAT-GTCTTACACTG
14542279 GCTCTCATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.17
45 14 0.23
46 26 0.43
47 10 0.17
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTACATCTCGAGGCCGAAG
Found at i:14542303 original size:47 final size:46
Alignment explanation
Indices: 14542196--14542328 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
14542186 TGACACATCT
* * *
14542196 TGTAGCCGATGCATGTCCCAGACATGTATTACACTGGCT-TACGTC
1 TGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATA
*
14542241 TCG-AGGCCGAAGCATGTCCCAGACATAGTCTTACACTGGCTCT-CATAA
1 T-GTA-GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTCTACAT-A
* ** *
14542289 TGTAGTCGATGCATGTTTCAGACATGTCTTACACTAGCTC
1 TGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
14542329 ACACAAGTGA
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
45 2 0.03
46 35 0.48
47 33 0.45
48 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (46 bp):
TGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATA
Found at i:14543366 original size:40 final size:40
Alignment explanation
Indices: 14543306--14543384 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
14543296 TTTAAAGACC
14543306 CCCAATCTTTATTCTATAGCTATTTGACACTTTTAGCTAA
1 CCCAATCTTTATTCTATAGCTATTTGACACTTTTAGCTAA
*
14543346 CCCAATCTTTATTCTCTAGCTATTTGACACTTTTAGCTA
1 CCCAATCTTTATTCTATAGCTATTTGACACTTTTAGCTA
14543385 TCAATTTAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.25, C:0.24, G:0.08, T:0.43
Consensus pattern (40 bp):
CCCAATCTTTATTCTATAGCTATTTGACACTTTTAGCTAA
Found at i:14544307 original size:13 final size:13
Alignment explanation
Indices: 14544289--14544326 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
14544279 GAAGCACGAT
14544289 TCACACGGGCGTG
1 TCACACGGGCGTG
*
14544302 TCACACGAGCGTG
1 TCACACGGGCGTG
14544315 TCACACGGGCGT
1 TCACACGGGCGT
14544327 ATCCCTGCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:14559225 original size:46 final size:47
Alignment explanation
Indices: 14559119--14559331 Score: 213
Period size: 46 Copynumber: 4.5 Consensus size: 47
14559109 TTTGTATGCT
* * * * *
14559119 AGTGTAAGACCATGTCTGGGACACGGCATTGGCATTGAGAT-TAGTGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGGCATCGAGATGTA-AGCC
* *
14559167 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTAAACC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCATCGAGATGTAAGCC
* * *
14559213 AGTGAAAGA-CATGTCTGGGACATGCATCGG-TTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCAT-CGAGATGTAAGCC
* *
14559257 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGAGATTGGAGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATCGAGA-TGTA-AGCC
*
14559307 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
14559332 GCGTCAGCCT
Statistics
Matches: 139, Mismatches: 17, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
44 9 0.06
45 15 0.11
46 62 0.45
47 18 0.13
48 9 0.06
49 1 0.01
50 25 0.18
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCATCGAGATGTAAGCC
Found at i:14559320 original size:50 final size:50
Alignment explanation
Indices: 14559256--14559387 Score: 151
Period size: 50 Copynumber: 2.7 Consensus size: 50
14559246 CGAGATGTGT
* **
14559256 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGAGATTGGAGAG-C
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-ATTCAAGAGTC
* * * * * *
14559306 CAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCTCGATTTCAATAGTC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAATTCAAGAGTC
*
14559356 TA-TGTAAGACCATGTCTGGGACATGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
14559388 TATTATACCC
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
49 32 0.47
50 36 0.53
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAATTCAAGAGTC
Found at i:14562747 original size:27 final size:26
Alignment explanation
Indices: 14562699--14562758 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
14562689 GCGAGGCTGC
*
14562699 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
14562726 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
14562752 CAGATAT
1 CAGATAT
14562759 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:14570753 original size:29 final size:28
Alignment explanation
Indices: 14570721--14570823 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
14570711 GTGACGAGAT
* *
14570721 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
14570750 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
14570779 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
14570808 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14570824 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:14578518 original size:29 final size:28
Alignment explanation
Indices: 14578486--14578588 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
14578476 GTGACGAGAT
* *
14578486 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
14578515 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
14578544 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
14578573 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14578589 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:14582731 original size:40 final size:40
Alignment explanation
Indices: 14582676--14582897 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
14582666 TATTCGGATG
14582676 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
14582716 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
14582758 ATA-CCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
14582797 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
14582837 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
14582877 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
14582898 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
39 37 0.23
40 89 0.55
41 10 0.06
42 25 0.16
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:14586136 original size:71 final size:71
Alignment explanation
Indices: 14586052--14586215 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
14586042 CGATTTGTCT
14586052 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
14586117 CTTTCA
66 CTTTCA
14586123 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
14586188 CTTTCA
66 CTTTCA
14586194 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
14586216 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:14586253 original size:71 final size:70
Alignment explanation
Indices: 14586052--14586246 Score: 252
Period size: 71 Copynumber: 2.8 Consensus size: 70
14586042 CGATTTGTCT
* * * *
14586052 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
14586117 CTTTCA
65 CTTTCA
* * * *
14586123 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
14586188 CTTTCA
65 CTTTCA
* *
14586194 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGC
14586247 GACTACAGGG
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 19 0.16
69 1 0.01
70 1 0.01
71 96 0.82
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:14589517 original size:29 final size:29
Alignment explanation
Indices: 14589484--14589557 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
14589474 CCTTCGAGCT
14589484 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
14589513 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
14589542 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
14589558 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:14589518 original size:58 final size:58
Alignment explanation
Indices: 14589425--14589557 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
14589415 ATACTCGATT
* * * * *
14589425 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
14589483 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
14589541 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
14589558 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:14599658 original size:17 final size:18
Alignment explanation
Indices: 14599638--14599684 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
14599628 TACAACATGA
*
14599638 GTTCTCACATGGT-ATGG
1 GTTCACACATGGTAATGG
* *
14599655 GTTCGCACAT-ATAATGG
1 GTTCACACATGGTAATGG
14599672 GTTCACACATGGT
1 GTTCACACATGGT
14599685 TATAACATGG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 1 0.04
17 22 0.92
18 1 0.04
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (18 bp):
GTTCACACATGGTAATGG
Found at i:14599756 original size:16 final size:16
Alignment explanation
Indices: 14599731--14599764 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14599721 ATATAACCCA
14599731 GGTTCACATACAACAT
1 GGTTCACATACAACAT
* *
14599747 GGTTCGCATATAACAT
1 GGTTCACATACAACAT
14599763 GG
1 GG
14599765 GTTTGCACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (16 bp):
GGTTCACATACAACAT
Found at i:14601891 original size:15 final size:14
Alignment explanation
Indices: 14601871--14601908 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
14601861 AACATTTTAA
14601871 GGTTTATGGATTAT
1 GGTTTATGGATTAT
14601885 GGGTTTA-GAGATTAT
1 -GGTTTATG-GATTAT
14601900 GGTTTATGG
1 GGTTTATGG
14601909 TTTAAGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:14603906 original size:29 final size:29
Alignment explanation
Indices: 14603866--14603968 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
14603856 GTTGAGAGAT
*
14603866 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
14603895 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
14603924 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
14603953 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14603969 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:14611988 original size:29 final size:29
Alignment explanation
Indices: 14611948--14612050 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
14611938 GTTGAGAGAT
*
14611948 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
14611977 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
14612006 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
14612035 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14612051 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:14614210 original size:16 final size:16
Alignment explanation
Indices: 14614190--14614225 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
14614180 ATTTAAAATC
*
14614190 TAAAAATA-AAAAATT
1 TAAAAATAGAAAAACT
14614205 TAAAAATAGAAAAACT
1 TAAAAATAGAAAAACT
14614221 TAAAA
1 TAAAA
14614226 TTTAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (16 bp):
TAAAAATAGAAAAACT
Found at i:14614217 original size:22 final size:22
Alignment explanation
Indices: 14614175--14614218 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
14614165 AAAATCTTCA
*
14614175 AAAAAATTTAAAATCTAAAAAT
1 AAAAAATTTAAAATATAAAAAT
*
14614197 AAAAAATTTAAAAATAGAAAAA
1 AAAAAATTT-AAAATATAAAAA
14614219 CTTAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAAAATTTAAAATATAAAAAT
Found at i:14616719 original size:27 final size:27
Alignment explanation
Indices: 14616689--14616831 Score: 205
Period size: 27 Copynumber: 5.3 Consensus size: 27
14616679 ACTGAAATGT
* * * *
14616689 CCTCGATTTGTAGAATTATCATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
14616716 CCTCGATTTATAAAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
14616743 CCTCGATTTATAGAATTACCGTTTTAT
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
14616770 CCTCGATTTAAAAAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
*
14616797 CCTCAATTTATAAAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
14616824 CCTCGATT
1 CCTCGATT
14616832 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAAAATTACCGTTTTAC
Found at i:14617001 original size:27 final size:27
Alignment explanation
Indices: 14616830--14616988 Score: 171
Period size: 27 Copynumber: 5.9 Consensus size: 27
14616820 TTACCCTCGA
* *
14616830 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
14616856 AGGATAGAATTACCAAAAT-CCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
14616883 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
14616910 TTGTAAAATTACCAAAATACCATTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * * *
14616937 TTGTGAAATTACCGAAATA-CTCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
14616964 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
14616989 ATTTACAAAA
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
26 22 0.20
27 83 0.77
28 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:14617072 original size:27 final size:27
Alignment explanation
Indices: 14616863--14617098 Score: 136
Period size: 27 Copynumber: 8.7 Consensus size: 27
14616853 TGTAGGATAG
* * *
14616863 AATTACCAAAAT-CCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
14616889 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
14616916 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *** *
14616943 AATTACCGAAATACTCTCAATTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* ** *
14616970 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
14616997 AATTA-TAGAAATACACTTGAGTTTTTAAA
1 AATTACCA-AAATACCCTTG-GTTTAT-AA
* * *
14617026 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGGTTTATAA
* * *
14617053 AATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
14617080 ATTTACGAAAACACCCTTG
1 AATTACCAAAATACCCTTG
14617099 TAGGATGAAA
Statistics
Matches: 170, Mismatches: 35, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
26 13 0.08
27 129 0.76
28 9 0.05
29 19 0.11
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:14617193 original size:27 final size:27
Alignment explanation
Indices: 14617129--14617193 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
14617119 ACCTCTAATA
*
14617129 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
14617156 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
14617183 GGTAAAATGAC
1 GGTAAAATGAC
14617194 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:14617998 original size:25 final size:25
Alignment explanation
Indices: 14617931--14618000 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
14617921 AGGAAGTGCT
* * *
14617931 AAAAGGGCTCTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
14617956 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
14617981 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
14618001 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:14618013 original size:24 final size:24
Alignment explanation
Indices: 14617956--14618027 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
14617946 CAATTTACCG
14617956 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
14617980 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
14618004 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
14618028 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:14618207 original size:42 final size:42
Alignment explanation
Indices: 14618148--14618239 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
14618138 TAGCCTCCCC
* *
14618148 AAATGGGCTTGCATACATTCATTGACATTACATGTGATGTTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
14618190 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
14618232 AAATGGGC
1 AAATGGGC
14618240 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:14618335 original size:31 final size:31
Alignment explanation
Indices: 14618263--14618346 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
14618253 CATTTACAGT
*
14618263 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
14618294 AAAGGCTTCGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14618325 AAAGGCTTCGGGCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
14618347 TCAAGACTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:14619666 original size:26 final size:26
Alignment explanation
Indices: 14619630--14619681 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14619620 GCTCAGCAGG
*
14619630 GACACGCCCGTGTGACACGCCCGTGT
1 GACACGCCCGTGTGACACGCACGTGT
*
14619656 GACACGCCCGTGTGACATGCACGTGT
1 GACACGCCCGTGTGACACGCACGTGT
14619682 ACGATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.17
Consensus pattern (26 bp):
GACACGCCCGTGTGACACGCACGTGT
Found at i:14619681 original size:13 final size:13
Alignment explanation
Indices: 14619630--14619672 Score: 86
Period size: 13 Copynumber: 3.3 Consensus size: 13
14619620 GCTCAGCAGG
14619630 GACACGCCCGTGT
1 GACACGCCCGTGT
14619643 GACACGCCCGTGT
1 GACACGCCCGTGT
14619656 GACACGCCCGTGT
1 GACACGCCCGTGT
14619669 GACA
1 GACA
14619673 TGCACGTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.19, C:0.37, G:0.30, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:14622508 original size:19 final size:19
Alignment explanation
Indices: 14622448--14622518 Score: 83
Period size: 19 Copynumber: 3.7 Consensus size: 19
14622438 TACATAATAA
14622448 ATAATTAATAATAAAATGAT
1 ATAA-TAATAATAAAATGAT
* *
14622468 ATAGTAA-AATAAAATAAT
1 ATAATAATAATAAAATGAT
14622486 ATAATGAATAATAAAA-GAT
1 ATAAT-AATAATAAAATGAT
14622505 ATAATATATAATAA
1 ATAATA-ATAATAA
14622519 TTTTTACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
18 15 0.34
19 19 0.43
20 10 0.23
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (19 bp):
ATAATAATAATAAAATGAT
Found at i:14628447 original size:3 final size:3
Alignment explanation
Indices: 14628434--14628473 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
14628424 AAAAGTAAAT
14628434 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14628474 ATTAAATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14633041 original size:19 final size:20
Alignment explanation
Indices: 14633018--14633061 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
14633008 ATTTAATCTA
*
14633018 ATTTTT-ATTATTTA-TTTT
1 ATTTTTGATTATATATTTTT
*
14633036 ATTTTTGATTCTATATTTTT
1 ATTTTTGATTATATATTTTT
14633056 ATTTTT
1 ATTTTT
14633062 ATTTTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 6 0.27
20 10 0.45
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (20 bp):
ATTTTTGATTATATATTTTT
Found at i:14633058 original size:6 final size:6
Alignment explanation
Indices: 14632990--14633066 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
14632980 ACTTGCTGTA
* * * * * *
14632990 TTTTAT TTATAT CTTTAT ATTTAA TCTAAT TTTTAT TATTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT TTTTAT
*
14633038 TTTTGAT TCTATAT TTTTAT TTTTAT TTT
1 TTTT-AT T-TTTAT TTTTAT TTTTAT TTT
14633067 AATATTTAAG
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
5 4 0.07
6 38 0.70
7 10 0.19
8 2 0.04
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:14633294 original size:20 final size:18
Alignment explanation
Indices: 14633269--14633317 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
14633259 AATAAAACAT
14633269 AATAAAATATTTAACATAGA
1 AATAAAATATTTAA-ATA-A
*
14633289 AATAAATATTATTTAATTAA
1 AATAAA-A-TATTTAAATAA
14633309 AATAAAATA
1 AATAAAATA
14633318 ATTTTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 2 0.08
19 1 0.04
20 13 0.50
21 3 0.12
22 7 0.27
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAAAATATTTAAATAA
Found at i:14633386 original size:43 final size:41
Alignment explanation
Indices: 14633325--14633415 Score: 137
Period size: 43 Copynumber: 2.2 Consensus size: 41
14633315 ATAATTTTTT
*
14633325 TAAAGGCCATGATTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGCCATGATCTTTAG-GGCGTTTGTGGG-AAAGCGCCGC
* *
14633368 TAAAGGTCATGATCTTTAGGGCGTTTTTGGGAAAGCGCCGC
1 TAAAGGCCATGATCTTTAGGGCGTTTGTGGGAAAGCGCCGC
14633409 TAAAGGC
1 TAAAGGC
14633416 ACGTTTTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 16 0.36
42 11 0.25
43 17 0.39
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (41 bp):
TAAAGGCCATGATCTTTAGGGCGTTTGTGGGAAAGCGCCGC
Found at i:14634385 original size:20 final size:21
Alignment explanation
Indices: 14634348--14634393 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
14634338 ACTTTACTAA
*
14634348 ATAATAAATGCTATTTTTA-T
1 ATAATAAATGCTAATTTTATT
14634368 ATAATAAAT-CTTAATTTTATT
1 ATAATAAATGC-TAATTTTATT
14634389 ATAAT
1 ATAAT
14634394 TTAAACGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 16 0.70
21 6 0.26
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.50
Consensus pattern (21 bp):
ATAATAAATGCTAATTTTATT
Found at i:14648631 original size:19 final size:19
Alignment explanation
Indices: 14648607--14648645 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14648597 TATTATTAAT
*
14648607 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
14648626 ATATTTATTATTAAAATAA
1 ATATTTATAATTAAAATAA
14648645 A
1 A
14648646 AATGAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:14648690 original size:22 final size:22
Alignment explanation
Indices: 14648650--14648705 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
14648640 AATAAAAATG
*
14648650 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
14648670 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
14648692 TATTAATAATTTAT
1 AAATAATAAATTAT
14648706 TGTATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:14650669 original size:11 final size:11
Alignment explanation
Indices: 14650655--14650694 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14650645 TGTTTTCTCC
14650655 CTATTTTGCTA
1 CTATTTTGCTA
*
14650666 CTATTTTACTA
1 CTATTTTGCTA
* *
14650677 TTATGTTGCTA
1 CTATTTTGCTA
14650688 CTATTTT
1 CTATTTT
14650695 ATTGCTATTG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.57
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:14650785 original size:30 final size:31
Alignment explanation
Indices: 14650732--14650795 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
14650722 ACTTATTTTA
*
14650732 TTGTTAATTATTATTATTCTTTTA-AAGACAT
1 TTGTTAATTATTATTATTATTTTAGAA-ACAT
*
14650763 TTGTTAATT-TTGTTATTATTTTAGAAACAT
1 TTGTTAATTATTATTATTATTTTAGAAACAT
14650793 TTG
1 TTG
14650796 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (31 bp):
TTGTTAATTATTATTATTATTTTAGAAACAT
Found at i:14650939 original size:12 final size:12
Alignment explanation
Indices: 14650918--14650951 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14650908 TATATATTTT
*
14650918 AAAATTATATAA
1 AAAATAATATAA
14650930 AAAATAATATAA
1 AAAATAATATAA
*
14650942 AAATTAATAT
1 AAAATAATAT
14650952 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:14651479 original size:29 final size:30
Alignment explanation
Indices: 14651433--14651491 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
14651423 TTATGATACG
14651433 TGTACTTTCAAAAAATGTCCAATGTGGTACT
1 TGTACTTT-AAAAAATGTCCAATGTGGTACT
14651464 TGTACTTT-AAAAATGTCCAATGTGGTAC
1 TGTACTTTAAAAAATGTCCAATGTGGTAC
14651492 ATGAACTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 20 0.71
31 8 0.29
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (30 bp):
TGTACTTTAAAAAATGTCCAATGTGGTACT
Found at i:14651499 original size:29 final size:29
Alignment explanation
Indices: 14651443--14651499 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
14651433 TGTACTTTCA
* *
14651443 AAAAATGTCCAATGTGGTACTTGTACTTT
1 AAAAATGTCCAATGTGGTACATGAACTTT
14651472 AAAAATGTCCAATGTGGTACATGAACTT
1 AAAAATGTCCAATGTGGTACATGAACTT
14651500 CAATATGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (29 bp):
AAAAATGTCCAATGTGGTACATGAACTTT
Found at i:14666017 original size:24 final size:24
Alignment explanation
Indices: 14665990--14666038 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
14665980 GTTAGTTTAT
*
14665990 AAATTATTATTATGAGTATAATGA
1 AAATTATTATTACGAGTATAATGA
14666014 AAATTATTATTACGAGTATAATGA
1 AAATTATTATTACGAGTATAATGA
14666038 A
1 A
14666039 TTGTCTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (24 bp):
AAATTATTATTACGAGTATAATGA
Found at i:14669245 original size:91 final size:91
Alignment explanation
Indices: 14669116--14669284 Score: 284
Period size: 91 Copynumber: 1.9 Consensus size: 91
14669106 GCCCATAAGT
* * *
14669116 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14669181 CGAGCTCGGATGCCTAGTTACATCTC
66 CGAGCTCGGATGCCTAGTTACATCTC
* *
14669207 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14669272 CGAGTTCGGATGC
66 CGAGCTCGGATGC
14669285 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTC
Found at i:14669281 original size:46 final size:46
Alignment explanation
Indices: 14669108--14669281 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
14669098 TGTAACCCGC
* * * *
14669108 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
14669154 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
14669204 -C-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
14669245 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14669282 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
41 6 0.06
42 2 0.02
43 1 0.01
45 28 0.26
46 64 0.59
48 1 0.01
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:14669300 original size:46 final size:45
Alignment explanation
Indices: 14669113--14669300 Score: 129
Period size: 46 Copynumber: 4.1 Consensus size: 45
14669103 CCCGCCCATA
* * * * * *
14669113 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCTCAACCATCT
14669159 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCT
* * * * *
14669206 --CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCT-CAACCATCT
*
14669250 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCAT-CT
14669296 AGTGA
1 AGTGA
14669301 CATGTCACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 33 0.29
46 64 0.57
47 3 0.03
48 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCT
Found at i:14671710 original size:30 final size:30
Alignment explanation
Indices: 14671666--14671754 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
14671656 CAAAGATAAC
14671666 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
14671695 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
14671725 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
14671755 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:14671714 original size:15 final size:15
Alignment explanation
Indices: 14671666--14671745 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
14671656 CAAAGATAAC
*
14671666 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
14671680 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
14671695 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
14671710 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
14671725 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
14671740 AAGAAA
1 AAGAAA
14671746 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:14671754 original size:15 final size:15
Alignment explanation
Indices: 14671677--14671754 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
14671667 AGAAAACCGA
14671677 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
14671692 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
14671706 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
14671721 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
14671737 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
14671752 ATA
1 ATA
14671755 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:14674788 original size:93 final size:93
Alignment explanation
Indices: 14674676--14674846 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14674666 GCCCATAAGT
* *
14674676 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14674741 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
14674769 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14674834 CGAGTTCGGATGC
66 CGAGCTCGGATGC
14674847 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:14674843 original size:46 final size:46
Alignment explanation
Indices: 14674668--14674843 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
14674658 TGTAACCCGC
* * *
14674668 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
14674714 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
14674764 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
14674807 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14674844 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:14676400 original size:22 final size:21
Alignment explanation
Indices: 14676353--14676406 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
14676343 CGGCCTCTAG
**
14676353 CACGGGCGTGTCCTAGGGTCA
1 CACGGGCGTGTCCTAGGACCA
*
14676374 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGT-CCTAGGACCA
*
14676396 CACGGGTGTGT
1 CACGGGCGTGT
14676407 GAGCCTTGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (21 bp):
CACGGGCGTGTCCTAGGACCA
Found at i:14676690 original size:13 final size:13
Alignment explanation
Indices: 14676668--14676703 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14676658 CTCATGAATT
14676668 TATA-TGTGAAAA
1 TATATTGTGAAAA
14676680 TATATTGTGAAAA
1 TATATTGTGAAAA
*
14676693 TATGTTGTGAA
1 TATATTGTGAA
14676704 TTTGTGGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (13 bp):
TATATTGTGAAAA
Found at i:14678419 original size:14 final size:15
Alignment explanation
Indices: 14678395--14678423 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14678385 ATAAGAATAA
14678395 GTATATAGTAGATAT
1 GTATATAGTAGATAT
14678410 GTATAT-GTAGATAT
1 GTATATAGTAGATAT
14678424 ACATGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (15 bp):
GTATATAGTAGATAT
Found at i:14678765 original size:20 final size:20
Alignment explanation
Indices: 14678717--14678756 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14678707 TATAAATAGT
14678717 GGATATGCATACATATAAAG
1 GGATATGCATACATATAAAG
14678737 GGATATGCATACATATAAAG
1 GGATATGCATACATATAAAG
14678757 TTATATGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (20 bp):
GGATATGCATACATATAAAG
Found at i:14681832 original size:20 final size:20
Alignment explanation
Indices: 14681787--14681836 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
14681777 CAAAAAATAA
*
14681787 TTAAAAAAAATCAATAAATG
1 TTAATAAAAATCAATAAATG
* * *
14681807 TT-ATAAAAATTATTAAATT
1 TTAATAAAAATCAATAAATG
14681826 TTAATAAAAAT
1 TTAATAAAAAT
14681837 ATAAAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TTAATAAAAATCAATAAATG
Found at i:14681840 original size:8 final size:8
Alignment explanation
Indices: 14681829--14681889 Score: 68
Period size: 8 Copynumber: 7.0 Consensus size: 8
14681819 TTAAATTTTA
14681829 ATAAAAAT
1 ATAAAAAT
14681837 ATAAAAAT
1 ATAAAAAT
14681845 ATAAAAAATT
1 AT-AAAAA-T
*
14681855 AGAAAAAT
1 ATAAAAAT
14681863 ATAAAAAT
1 ATAAAAAT
14681871 CATAAAATAAT
1 -AT-AAA-AAT
14681882 ATAAAAAT
1 ATAAAAAT
14681890 GGTAAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
8 21 0.46
9 15 0.33
10 7 0.15
11 3 0.07
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (8 bp):
ATAAAAAT
Found at i:14681882 original size:19 final size:18
Alignment explanation
Indices: 14681829--14681937 Score: 75
Period size: 19 Copynumber: 6.0 Consensus size: 18
14681819 TTAAATTTTA
14681829 ATAAAAAT-AT-AAAAAT
1 ATAAAAATCATAAAAAAT
14681845 ATAAAAA--ATTAGAAAAAT
1 ATAAAAATCA-TA-AAAAAT
14681863 ATAAAAATCATAAAATAAT
1 ATAAAAATCATAAAA-AAT
** **
14681882 ATAAAAATGGTAAAATTTT
1 ATAAAAATCATAAAA-AAT
*
14681901 ATAAAAGTCATAAAAAA-
1 ATAAAAATCATAAAAAAT
*
14681918 ATGTAAAATGCATAAAAAAT
1 AT-AAAAAT-CATAAAAAAT
14681938 GCCCTTTAAC
Statistics
Matches: 73, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
15 1 0.01
16 8 0.11
17 2 0.03
18 20 0.27
19 41 0.56
20 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26
Consensus pattern (18 bp):
ATAAAAATCATAAAAAAT
Found at i:14681887 original size:26 final size:24
Alignment explanation
Indices: 14681827--14681887 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 24
14681817 TATTAAATTT
14681827 TAATAAAAATATAAAAATATAAAA
1 TAATAAAAATATAAAAATATAAAA
14681851 -AATTAGAAAAATATAAAAATCATAAAA
1 TAA-T--AAAAATATAAAAAT-ATAAAA
14681878 TAATATAAAA
1 TAATA-AAAA
14681888 ATGGTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
23 2 0.06
24 1 0.03
25 1 0.03
26 18 0.58
27 7 0.23
28 2 0.06
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (24 bp):
TAATAAAAATATAAAAATATAAAA
Found at i:14681934 original size:38 final size:38
Alignment explanation
Indices: 14681808--14681934 Score: 111
Period size: 38 Copynumber: 3.4 Consensus size: 38
14681798 CAATAAATGT
* * *
14681808 TATAAAAATTATTAAATTTTAATAAAAAT-ATAAAAATA
1 TATAAAAATGATAAAATTTT-ATAAAAATCATAAAAAAA
* * * *
14681846 TA-AAAAATTAGAAAA--ATATAAAAATCATAAAATAA
1 TATAAAAATGATAAAATTTTATAAAAATCATAAAAAAA
* *
14681881 TATAAAAATGGTAAAATTTTATAAAAGTCATAAAAAAA
1 TATAAAAATGATAAAATTTTATAAAAATCATAAAAAAA
*
14681919 TGT-AAAATGCATAAAA
1 TATAAAAATG-ATAAAA
14681935 AATGCCCTTT
Statistics
Matches: 71, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
34 8 0.11
35 10 0.14
36 10 0.14
37 17 0.24
38 26 0.37
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (38 bp):
TATAAAAATGATAAAATTTTATAAAAATCATAAAAAAA
Found at i:14682120 original size:15 final size:16
Alignment explanation
Indices: 14682091--14682124 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14682081 TTTTTATAAT
14682091 TTTTTTTACGAATTTTA
1 TTTTTTTAC-AATTTTA
*
14682108 TTTTTTTACATTTTTA
1 TTTTTTTACAATTTTA
14682124 T
1 T
14682125 AATATTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTTTTACAATTTTA
Found at i:14682151 original size:37 final size:37
Alignment explanation
Indices: 14682080--14682151 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
14682070 TTGTATGATA
* * **
14682080 ATTTTTATAATTTTTTTTACGAATTTTATTTTTTTAC
1 ATTTTTATAATTATTCTTACGAATTTTAAATTTTTAC
14682117 ATTTTTATAA-TATTCTTACGAATTTATAAATTTTT
1 ATTTTTATAATTATTCTTACGAATTT-TAAATTTTT
14682152 GTAATTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 13 0.43
37 17 0.57
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (37 bp):
ATTTTTATAATTATTCTTACGAATTTTAAATTTTTAC
Found at i:14682780 original size:10 final size:10
Alignment explanation
Indices: 14682767--14682800 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
14682757 TGACTTCCAG
14682767 ATTTTAATTA
1 ATTTTAATTA
14682777 ATTTTAATTA
1 ATTTTAATTA
14682787 ATTAATTAATTA
1 ATT--TTAATTA
14682799 AT
1 AT
14682801 ATTGGTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
12 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATTTTAATTA
Found at i:14687106 original size:2 final size:2
Alignment explanation
Indices: 14687101--14687129 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14687091 TCTCTCTCTC
14687101 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14687130 GTCTAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14697711 original size:40 final size:40
Alignment explanation
Indices: 14697653--14697840 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
14697643 TGAATGATAC
* *
14697653 CCGGGCTAAG-CCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCC-GAAGGCATTTGTGCGAGTTG-TTATAT
14697693 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
14697733 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
14697773 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
14697813 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
14697841 TTATGGATTA
Statistics
Matches: 140, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
40 135 0.96
41 5 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:14697870 original size:80 final size:80
Alignment explanation
Indices: 14697649--14697861 Score: 299
Period size: 80 Copynumber: 2.7 Consensus size: 80
14697639 TATTTGAATG
*
14697649 ATACCCGGGCTAAG-CCCTGAAGGCATTTATGCTA-GTGATTATATCCGGGCTAAGACCCGAAGG
1 ATACCCGGGCTAAGACCC-GAAGGCATTTGTGCTATG-GATTATATCCGGGCTAAGACCCGAAGG
*
14697712 CATTTGTGCGAGTTGTT
64 CATTTGTGCGAGTTGCT
* * *
14697729 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTA-TGGATTATATCCGGGCTAAGACCCGAAGGC
14697793 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
14697809 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTATGGATTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGC-TATGGATTATATCCGGGCTAA
14697862 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
80 105 0.89
81 13 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTATGGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:14702964 original size:26 final size:26
Alignment explanation
Indices: 14702935--14702992 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
14702925 TCTGTTATAT
14702935 GGCTCTTCGTGAGCTTCCCAATTAAA
1 GGCTCTTCGTGAGCTTCCCAATTAAA
* * ** *
14702961 GGCTCTTTGTGATCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCAATTAAA
14702987 GGCTCT
1 GGCTCT
14702993 CAGGAGTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCAATTAAA
Found at i:14707912 original size:26 final size:25
Alignment explanation
Indices: 14707895--14707945 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
14707885 ATTTTTTTTA
*
14707895 AACTAGATCATAGCTTATCATGCTT
1 AACTAGATCATAGCTTATTATGCTT
*
14707920 AACTAGATCATAGCTTATTGTGCTT
1 AACTAGATCATAGCTTATTATGCTT
14707945 A
1 A
14707946 GGTTTTGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (25 bp):
AACTAGATCATAGCTTATTATGCTT
Found at i:14709600 original size:46 final size:45
Alignment explanation
Indices: 14709499--14709672 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
14709489 CATTATGGGA
*
14709499 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACGA-GT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CT-ACGA-GATGT
* * * *
14709547 GCTAGTGTGAGACGTGTCTGGAACATGCATCGGCCT-CGAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT
* *
14709591 AAGCCAGTGTAAGACATATCTGGGACATGCATCGG-TTACGAGATGT
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT
*
14709637 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
14709673 ATGGACATGT
Statistics
Matches: 105, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
43 2 0.02
44 15 0.14
45 15 0.14
46 51 0.49
47 12 0.11
48 10 0.10
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAGATGT
Found at i:14709671 original size:92 final size:93
Alignment explanation
Indices: 14709498--14709716 Score: 223
Period size: 94 Copynumber: 2.3 Consensus size: 93
14709488 ACATTATGGG
* * * * *
14709498 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTGAGACGTG
1 AGCCAGTGTAAGACCATATCTGGGACATGGCATCGG-ATTGAGACGAGTGCCAATGTAAGACATG
14709563 TCTGGAACATGCATCGGCCTCGAGATGTA
65 TCTGGAACATGCATCGGCCTCGAGATGTA
14709592 AGCCAGTGTAAGA-CATATCTGGGACAT-GCATCGG-TT-ACGA-GATGTGCCAATGTAAGACCA
1 AGCCAGTGTAAGACCATATCTGGGACATGGCATCGGATTGA-GACGA-GTGCCAATGTAAGA-CA
* * * *
14709652 TGTCTGGGACATGGCATCGGCATGGACATGTGA
63 TGTCTGGAACAT-GCATCGGCCTCGAGATGT-A
** * *
14709685 GAGCTGGTGTAAGACCATGTCTAGGACATGGC
1 -AGCCAGTGTAAGACCATATCTGGGACATGGC
14709717 GTTAGCCTTG
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
89 3 0.03
90 15 0.14
91 12 0.12
92 22 0.21
93 14 0.13
94 24 0.23
95 12 0.12
96 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATATCTGGGACATGGCATCGGATTGAGACGAGTGCCAATGTAAGACATGT
CTGGAACATGCATCGGCCTCGAGATGTA
Found at i:14709703 original size:50 final size:49
Alignment explanation
Indices: 14709642--14709769 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
14709632 GATGTGCCAA
*
14709642 TGTAAGACCATGTCTGGGACATGGCATCGGCATGGACATGTGAGAG-CTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATGGA-ATGTGAGAGTC-AG
* * ** * * * * *
14709692 TGTAAGACCATGTCTAGGACATGGCGTTAGCCTTGATTTTGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATGGAATGTGAGAGTCAG
14709741 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
14709770 ACATTATACA
Statistics
Matches: 63, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
49 32 0.51
50 31 0.49
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATGGAATGTGAGAGTCAG
Found at i:14711461 original size:11 final size:11
Alignment explanation
Indices: 14711445--14711479 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
14711435 TTATGCTTAC
14711445 TCCCTTTCCTT
1 TCCCTTTCCTT
14711456 TCCCTTTCCTT
1 TCCCTTTCCTT
*
14711467 TCCCTTTTCTT
1 TCCCTTTCCTT
14711478 TC
1 TC
14711480 AGTGCCGCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (11 bp):
TCCCTTTCCTT
Found at i:14718104 original size:46 final size:46
Alignment explanation
Indices: 14717960--14718173 Score: 193
Period size: 46 Copynumber: 4.6 Consensus size: 46
14717950 TGTGTGAGCT
* ** *
14717960 AGTGTAAGACATGTCTGGGACAT-GCATCGACCACATTATGGGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCAAGAT-GAAGCC
* ** * * *
14718006 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACCTCAAGATGA-AGCC
14718054 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCAAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCAAGATG-AAGCC
* ** * *
14718100 AGTGTAAGACATGTTTGGGACATGGCATCGAGTTGATGGATG-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACCTCA-AGATGAAGCC
* *
14718146 AGTGTAAGACCCT-TCTAGGACATGGCAT
1 AGTGTAAGA-CATGTCTGGGACATGGCAT
14718174 TGGCATTATA
Statistics
Matches: 137, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
46 72 0.53
47 41 0.30
48 24 0.18
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACCTCAAGATGAAGCC
Found at i:14719707 original size:40 final size:40
Alignment explanation
Indices: 14719662--14719823 Score: 182
Period size: 40 Copynumber: 4.0 Consensus size: 40
14719652 CGGAATTTAG
* ** *
14719662 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *** * *
14719702 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *
14719742 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *
14719782 CCGGATATAATC-ACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
14719822 CC
1 CC
14719824 AGGTATCATT
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:14727738 original size:40 final size:39
Alignment explanation
Indices: 14727674--14727841 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
14727664 TCTTCAGAAT
* **
14727674 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
14727713 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
14727753 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
14727793 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
14727833 TTAGCCCGG
1 TTAGCCCGG
14727842 GTATCATTCA
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 101 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:14727822 original size:80 final size:80
Alignment explanation
Indices: 14727674--14727841 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 80
14727664 TCTTCAGAAT
* * ** *
14727674 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
*
14727738 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGAC
** * *
14727753 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCA
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCA
*
14727817 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
14727833 TTAGCCCGG
1 TTAGCCCGG
14727842 GTATCATTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 4 0.05
80 70 0.92
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
AAATGCCTTCGGGAC
Found at i:14733264 original size:22 final size:23
Alignment explanation
Indices: 14733221--14733269 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
14733211 CCATAAAACT
14733221 TTTCTTTTTATTAAACCAGGAC-
1 TTTCTTTTTATTAAACCAGGACA
** *
14733243 TTTCTTTTTATTCGACCGGGACA
1 TTTCTTTTTATTAAACCAGGACA
14733266 TTTC
1 TTTC
14733270 ATCATAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.47
Consensus pattern (23 bp):
TTTCTTTTTATTAAACCAGGACA
Found at i:14738451 original size:46 final size:46
Alignment explanation
Indices: 14738367--14738486 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
14738357 TCTCGTACCC
* *
14738367 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCGAGGCT
** *
14738413 GATGCATGTCCTGGACATGTCTTACACTAGCACT-CGTCTCGATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCGAGGCT
*
14738459 AATGCCATGTCCCAGACATGGTCTTACA
1 GATG-CATGTCCCAGACAT-GTCTTACA
14738487 TAGGCTCTCA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 42 0.67
47 13 0.21
48 8 0.13
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCGAGGCT
Found at i:14743818 original size:48 final size:48
Alignment explanation
Indices: 14743763--14743931 Score: 200
Period size: 48 Copynumber: 3.6 Consensus size: 48
14743753 TGATATGTGT
*
14743763 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
* * * * ** *
14743811 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
* *
14743857 GCTAGTGTAAGACATTTCTGGGACATGCAT-GAGGCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CCTCGAGATATACAA
* *
14743905 GCTAGTGTAAGACCTGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
14743932 GCGTCTGCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
45 1 0.01
46 34 0.35
47 2 0.02
48 61 0.62
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
Found at i:14744009 original size:49 final size:49
Alignment explanation
Indices: 14743766--14744081 Score: 148
Period size: 48 Copynumber: 6.7 Consensus size: 49
14743756 TATGTGTGCT
* * *
14743766 AGTGTAAGACATGTCTGGGACATG-CATCGACCTC-A-AGATATACAAGCC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGAT-GA-AAGTC
* * * * * *
14743814 AGTGTAAGACATGTCTGGGACATG-CATCGGCATTG--AGACGAGAG-C
1 AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAAGTC
* * * * *
14743859 TAGTGTAAGACATTTCTGGGACATG-CAT-GAGGCTCGAGATAT-ACAAG-C
1 -AGTGTAAGACCTGTCTGGGACATGACATCGA-CCTCGATAGATGA-AAGTC
* * * * * *
14743907 TAGTGTAAGACCTGTTTGGGACATGGCGTCTG--CTTG-TTG-TG--TGTC
1 -AGTGTAAGACCTGTCTGGGACATGACATC-GACCTCGATAGATGAAAGTC
*
14743952 AGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAGATGAGAG-C
1 AGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAGATGAAAGTC
* ** * * * *
14744000 TAGTGTAAGACCTATCTGGGACACAAAATCGGCCTCTATATATGAAAGTC
1 -AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAAGTC
* *
14744050 AGTGTAAGACCTGTCTAGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACATGACATCGAC
14744082 TTTGATATGC
Statistics
Matches: 203, Mismatches: 44, Indels: 41
0.70 0.15 0.14
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 4 0.02
46 34 0.17
47 4 0.02
48 66 0.33
49 65 0.32
50 1 0.00
51 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAAGTC
Found at i:14752793 original size:27 final size:27
Alignment explanation
Indices: 14752763--14752847 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
14752753 GCATGTGGCT
14752763 TGGCCGTGTGACCCCTGCACTTACACA
1 TGGCCGTGTGACCCCTGCACTTACACA
*** * *
14752790 TGGCC-TAGT-ACAAGGTGCA-TGT-GACT
1 TGGCCGT-GTGAC-CCCTGCACT-TACACA
14752816 TGGCCGTGTGACCCCTGCACTTACACA
1 TGGCCGTGTGACCCCTGCACTTACACA
14752843 TGGCC
1 TGGCC
14752848 TAGTACACGG
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
26 18 0.44
27 23 0.56
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.24
Consensus pattern (27 bp):
TGGCCGTGTGACCCCTGCACTTACACA
Found at i:14752818 original size:53 final size:53
Alignment explanation
Indices: 14752753--14752880 Score: 238
Period size: 53 Copynumber: 2.4 Consensus size: 53
14752743 TGACACACGG
*
14752753 GCATGTGGCTTGGCCGTGTGACCCCTGCACTTACACATGGCCTAGTACAAGGT
1 GCATGTGACTTGGCCGTGTGACCCCTGCACTTACACATGGCCTAGTACAAGGT
*
14752806 GCATGTGACTTGGCCGTGTGACCCCTGCACTTACACATGGCCTAGTACACGGT
1 GCATGTGACTTGGCCGTGTGACCCCTGCACTTACACATGGCCTAGTACAAGGT
14752859 GCATGTGACTTGGCCGTGTGAC
1 GCATGTGACTTGGCCGTGTGAC
14752881 TCAAGTCAGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 73 1.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (53 bp):
GCATGTGACTTGGCCGTGTGACCCCTGCACTTACACATGGCCTAGTACAAGGT
Found at i:14752861 original size:27 final size:27
Alignment explanation
Indices: 14752778--14752861 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
14752768 GTGTGACCCC
*
14752778 TGCACTTACACATGGCCTAGTACAAGG
1 TGCACTTACACATGGCCTAGTACACGG
* * **
14752805 TGCA-TGT-GACTTGGCCGT-GTGAC-CCC
1 TGCACT-TACACATGGCC-TAGT-ACACGG
14752831 TGCACTTACACATGGCCTAGTACACGG
1 TGCACTTACACATGGCCTAGTACACGG
14752858 TGCA
1 TGCA
14752862 TGTGACTTGG
Statistics
Matches: 41, Mismatches: 9, Indels: 14
0.64 0.14 0.22
Matches are distributed among these distances:
26 18 0.44
27 23 0.56
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (27 bp):
TGCACTTACACATGGCCTAGTACACGG
Found at i:14757988 original size:19 final size:19
Alignment explanation
Indices: 14757953--14757990 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14757943 TTGCAACTTA
*
14757953 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
14757972 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
14757991 TCTGATAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:14780428 original size:40 final size:40
Alignment explanation
Indices: 14780383--14780549 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
14780373 CGGAATATAA
14780383 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
14780423 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
14780463 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14780503 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14780542 CCGGATAT
1 CCGGATAT
14780550 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14780533 original size:80 final size:79
Alignment explanation
Indices: 14780383--14780549 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
14780373 CGGAATATAA
* *
14780383 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
14780448 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
14780463 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
14780525 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
14780542 CCGGATAT
1 CCGGATAT
14780550 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:14781397 original size:17 final size:19
Alignment explanation
Indices: 14781374--14781419 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
14781364 AAGAAGCATG
14781374 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
14781392 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
14781410 AATCATGCTC
1 AATCATGCTC
14781420 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:14784203 original size:124 final size:122
Alignment explanation
Indices: 14783983--14784204 Score: 284
Period size: 124 Copynumber: 1.8 Consensus size: 122
14783973 GAATTATGTG
* * * *
14783983 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * * **
14784048 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTACGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
14784105 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
14784169 GGCTAAGCCCCGAAGACAATTACGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTACGCTAGAAATTATA
14784205 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
122 16 0.19
124 64 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTACGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:14784248 original size:40 final size:40
Alignment explanation
Indices: 14784163--14784313 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
14784153 AATTGAATGA
* * ** *
14784163 TATCCGGGCTAAGCCCCGAAGACAATTACGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
14784203 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
* *
14784244 -ATCCGGGCTAAGACTCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
14784283 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
14784314 ACGTGGTTAT
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.06
40 77 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:14784327 original size:40 final size:40
Alignment explanation
Indices: 14784200--14784329 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
14784190 ACGCTGGAAA
* * *
14784200 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * * ***
14784240 CTACATCCGGGCTAAGACTCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
14784280 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
14784320 TTATATCCGG
1 TTATATCCGG
14784330 TTATATTCAG
Statistics
Matches: 70, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:14791909 original size:40 final size:40
Alignment explanation
Indices: 14791825--14791974 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
14791815 AATTGAATGA
* * * *
14791825 TATCCGGGCTAAG-CCCCAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
14791864 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
14791905 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
14791944 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
14791975 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 17 0.19
40 67 0.74
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:14791988 original size:40 final size:40
Alignment explanation
Indices: 14791861--14791990 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
14791851 ATGCTGGAAA
* * *
14791861 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
14791901 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
14791941 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
14791981 TTATATCCGG
1 TTATATCCGG
14791991 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:14805562 original size:93 final size:93
Alignment explanation
Indices: 14805403--14805575 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
14805393 CGCCCATAAG
* * *
14805403 CGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14805468 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
14805496 CGAACTCGGACTCAGCTCGACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14805561 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
14805576 CAAACATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:14805571 original size:46 final size:46
Alignment explanation
Indices: 14805396--14805571 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
14805386 TGTAACCCGC
* * * *
14805396 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
14805442 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
14805492 -C-TCA-CGAACTCGGACTCAGCTCGACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
14805535 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
14805572 TGCCCAAACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:14806266 original size:19 final size:19
Alignment explanation
Indices: 14806242--14806284 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
14806232 ACATAATTTA
14806242 AAACCTCATATTCTATCAT
1 AAACCTCATATTCTATCAT
14806261 AAACCTCATATTCTATCAT
1 AAACCTCATATTCTATCAT
14806280 AAACC
1 AAACC
14806285 CTAGTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.33
Consensus pattern (19 bp):
AAACCTCATATTCTATCAT
Found at i:14813002 original size:2 final size:2
Alignment explanation
Indices: 14812995--14813028 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14812985 CATCAGCTAG
14812995 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14813029 ATAGGCTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14819988 original size:79 final size:80
Alignment explanation
Indices: 14819845--14820052 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
14819835 ACCTTCGGAG
* * ** * * * *
14819845 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
14819909 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
14819924 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
14819986 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
14820003 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
14820053 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:14819997 original size:40 final size:40
Alignment explanation
Indices: 14819945--14820052 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
14819935 TATCACGATT
** *
14819945 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
14819985 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
14820025 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
14820053 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:14827228 original size:18 final size:18
Alignment explanation
Indices: 14827205--14827239 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14827195 AATCCTCCTA
*
14827205 TCTTTTTATTTTTATTTT
1 TCTTTTTATTTTCATTTT
*
14827223 TCTTTTTCTTTTCATTT
1 TCTTTTTATTTTCATTT
14827240 CAATTTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTATTTTCATTTT
Found at i:14839346 original size:93 final size:93
Alignment explanation
Indices: 14839234--14839404 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
14839224 GCCCATAAGT
* *
14839234 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14839299 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
*
14839327 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14839392 CGAGTTCGGATGC
66 CGAGCTCGGATGC
14839405 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:14839401 original size:46 final size:46
Alignment explanation
Indices: 14839226--14839401 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
14839216 TGTAACCCGC
* *
14839226 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
14839272 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-T
* ** *
14839317 -TATATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
14839365 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14839402 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 6 0.05
45 1 0.01
46 66 0.59
47 28 0.25
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:14844521 original size:33 final size:33
Alignment explanation
Indices: 14844479--14844544 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
14844469 GGCTCGAAAC
14844479 TCAGATTGGACAGCTTGCCAAGTTGATTTCTGA
1 TCAGATTGGACAGCTTGCCAAGTTGATTTCTGA
14844512 TCAGATTGGACAGCTTGCCAAGTTGATTTCTGA
1 TCAGATTGGACAGCTTGCCAAGTTGATTTCTGA
14844545 ATGACCACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (33 bp):
TCAGATTGGACAGCTTGCCAAGTTGATTTCTGA
Found at i:14848857 original size:14 final size:14
Alignment explanation
Indices: 14848838--14848864 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14848828 ATATTTGGCT
14848838 TGTTCTTAATTATG
1 TGTTCTTAATTATG
14848852 TGTTCTTAATTAT
1 TGTTCTTAATTAT
14848865 TGTCTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:14853243 original size:24 final size:24
Alignment explanation
Indices: 14853201--14853246 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
14853191 ATGAATCGGC
*
14853201 AAAAGCCGAAATGTCGAAATGCTG
1 AAAAGCCGAAAAGTCGAAATGCTG
14853225 AAAAGCCGAAAAGAT-GAAATGC
1 AAAAGCCGAAAAG-TCGAAATGC
14853247 CAAAAAGTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.48, C:0.15, G:0.24, T:0.13
Consensus pattern (24 bp):
AAAAGCCGAAAAGTCGAAATGCTG
Found at i:14853252 original size:24 final size:24
Alignment explanation
Indices: 14853201--14853259 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
14853191 ATGAATCGGC
* **
14853201 AAAAGCCGAAATGTCGAAATGCTG
1 AAAAGCCGAAAAGTCGAAATGCCA
14853225 AAAAGCCGAAAAGAT-GAAATGCCA
1 AAAAGCCGAAAAG-TCGAAATGCCA
*
14853249 AAAAGTCGAAA
1 AAAAGCCGAAA
14853260 GTTAGGCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 29 0.97
25 1 0.03
ACGTcount: A:0.51, C:0.15, G:0.22, T:0.12
Consensus pattern (24 bp):
AAAAGCCGAAAAGTCGAAATGCCA
Found at i:14853517 original size:29 final size:29
Alignment explanation
Indices: 14853484--14853595 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 29
14853474 TGATATGATC
14853484 TGGGCCTAATGGGCCATATGAATGTAAAT
1 TGGGCCTAATGGGCCATATGAATGTAAAT
* * * * * * *
14853513 TGGGCTTAGTGGGTCATAAGAATATGAAC
1 TGGGCCTAATGGGCCATATGAATGTAAAT
* * *
14853542 TGAGCC-AGATGGGCCATATAAATG-AGAT
1 TGGGCCTA-ATGGGCCATATGAATGTAAAT
* * *
14853570 TGGGCCCAGTGGGCCATATGCATGTA
1 TGGGCCTAATGGGCCATATGAATGTA
14853596 TGTAGGGATA
Statistics
Matches: 59, Mismatches: 21, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
28 20 0.34
29 39 0.66
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.25
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATGAATGTAAAT
Found at i:14856617 original size:40 final size:40
Alignment explanation
Indices: 14856558--14856726 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
14856548 CGGGACTTTA
* * *
14856558 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
14856598 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
14856638 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
14856678 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
14856718 CCCGGATAT
1 CCCGGATAT
14856727 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:14864702 original size:39 final size:40
Alignment explanation
Indices: 14864644--14864772 Score: 154
Period size: 39 Copynumber: 3.3 Consensus size: 40
14864634 CGGGACTTTA
* * *
14864644 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
14864684 -CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
14864723 CCCGGATATAGCTACTAGCA-AATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
14864762 CCCGGATATAA
1 CCCGGATATAA
14864773 TTTTCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
39 60 0.80
40 15 0.20
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Done.